AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87062.t1 MTR_7g072560 98.347 242 4 0 1 242 1 242 7.43e-177 485
MS.gene87062.t1 MTR_4g029040 49.107 224 102 2 1 224 1 212 3.08e-79 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87062.t1 AT3G51730 45.500 200 102 2 20 219 20 212 3.44e-59 186
MS.gene87062.t1 AT5G01800 42.857 161 91 1 46 205 38 198 4.38e-48 158

Find 36 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACTGTTTCATCACTAT+TGG 0.283182 7.4:-32035189 MS.gene87062:CDS
TGCACTTCATTGGACAAGTT+TGG 0.286480 7.4:-32034794 MS.gene87062:CDS
AGGAAATATTAGCAATGTTC+TGG 0.310964 7.4:+32035246 None:intergenic
GCTGCAAACTCCGCCTCTTC+TGG 0.328052 7.4:-32038360 MS.gene87062:intron
GCACTTCATTGGACAAGTTT+GGG 0.367364 7.4:-32034793 MS.gene87062:CDS
GACTTTATTGCAGAAATCTC+CGG 0.393620 7.4:+32035277 None:intergenic
GCTGAAAGTGTGCACTTCAT+TGG 0.394899 7.4:-32034804 MS.gene87062:CDS
GGAACCATGGAAGGGAGAAT+TGG 0.412534 7.4:-32038459 None:intergenic
TGAAAATGCAGAGAAATTCC+TGG 0.440898 7.4:-32034492 MS.gene87062:CDS
ACTTAAGAGGTCAGAAAGAA+AGG 0.447038 7.4:+32034406 None:intergenic
AAGAAGATTGTTCTAGAGTA+TGG 0.452684 7.4:-32034527 MS.gene87062:CDS
TTCCATAAAAGATACTTAAG+AGG 0.466000 7.4:+32034393 None:intergenic
TCACAAAGTGCACACACATC+TGG 0.483184 7.4:+32035641 None:intergenic
TGCATATATCTGTCTTCTCC+AGG 0.494087 7.4:+32034474 None:intergenic
ATTGGACAAGTTTGGGAGCA+AGG 0.495192 7.4:-32034786 MS.gene87062:intron
CAAGAGGACTTGCAAACCCT+TGG 0.501291 7.4:-32038392 MS.gene87062:CDS
AGATAACTAACCTCTGTGTC+AGG 0.508453 7.4:+32035152 None:intergenic
TCTTCTCAAAAGTGTGAAGC+TGG 0.512735 7.4:+32035534 None:intergenic
TGTTCTAGAGTATGGTCCCT+TGG 0.519354 7.4:-32034519 MS.gene87062:CDS
CACTGCATTACATGCTTGCA+AGG 0.531010 7.4:-32034453 MS.gene87062:CDS
AAGTCCAATTCTCCCTTCCA+TGG 0.537066 7.4:+32038455 None:intergenic
ACTTTATTGCAGAAATCTCC+GGG 0.544680 7.4:+32035278 None:intergenic
GTCATTTCTGAGAAGAAAAG+TGG 0.549629 7.4:+32035311 None:intergenic
TTGCAGCAATGATGCTCCAA+GGG 0.555078 7.4:+32038376 None:intergenic
AGTTTCTTCGCAAAACTCGC+AGG 0.561939 7.4:+32035205 None:intergenic
TGTACAGTGCATCAACTTGG+TGG 0.565409 7.4:-32035345 MS.gene87062:intron
GTAAAGAATGTTACCAGAAG+AGG 0.576190 7.4:+32038347 None:intergenic
GCTCTGGCTTGTGATGCAAG+AGG 0.590110 7.4:-32038408 MS.gene87062:CDS
TTTGCAGCAATGATGCTCCA+AGG 0.601227 7.4:+32038375 None:intergenic
GAAATCTCCGGGCTGAACTG+AGG 0.609204 7.4:+32035289 None:intergenic
AAGAATGTTACCAGAAGAGG+CGG 0.611969 7.4:+32038350 None:intergenic
AATTGTACAGTGCATCAACT+TGG 0.621333 7.4:-32035348 MS.gene87062:intron
GAAATGACCTCAGTTCAGCC+CGG 0.624944 7.4:-32035296 MS.gene87062:CDS
TTGTGAGGAATATACTAGCA+AGG 0.649113 7.4:-32035624 MS.gene87062:CDS
AGATGTGTGTGCACTTTGTG+AGG 0.671377 7.4:-32035639 MS.gene87062:CDS
GATAAAAGATCCTGACACAG+AGG 0.715437 7.4:-32035162 MS.gene87062:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATTGTTTATATTGA+AGG - chr7.4:32035778-32035797 MS.gene87062:intron 10.0%
!! TTCTATTTATTAATGAATAT+TGG - chr7.4:32034510-32034529 MS.gene87062:CDS 10.0%
!!! GAAATTTTAAAATGAAAAAA+AGG + chr7.4:32037950-32037969 None:intergenic 10.0%
!!! TTTTTTCCTATAAAATTTTT+CGG - chr7.4:32036853-32036872 MS.gene87062:intron 10.0%
!! AAAGTAGATTTCTTAATAAT+TGG + chr7.4:32036136-32036155 None:intergenic 15.0%
!! AATTATCTTCATATACTATA+AGG - chr7.4:32038116-32038135 MS.gene87062:intron 15.0%
!! ATAAACAATATAATAAACCA+AGG + chr7.4:32035773-32035792 None:intergenic 15.0%
!! CTTAGATTTGATTAAAATTA+AGG - chr7.4:32034627-32034646 MS.gene87062:intron 15.0%
!! TAAACAATATAATAAACCAA+GGG + chr7.4:32035772-32035791 None:intergenic 15.0%
!! TACCTATAATATATTCAAAA+TGG + chr7.4:32034786-32034805 None:intergenic 15.0%
!!! AAACAATATTTTTATGAGAA+TGG - chr7.4:32038424-32038443 MS.gene87062:CDS 15.0%
!!! ATCCATTTTGAATATATTAT+AGG - chr7.4:32034781-32034800 MS.gene87062:intron 15.0%
!!! TAAAAACATGATATTTTTGT+AGG - chr7.4:32035381-32035400 MS.gene87062:intron 15.0%
!!! TACATTTGTTGAAAAAATAA+AGG - chr7.4:32036369-32036388 MS.gene87062:intron 15.0%
!!! TATATGTACAATATTTTAGT+AGG - chr7.4:32037771-32037790 MS.gene87062:intron 15.0%
!!! TATCAAAATTTCTTTTCATT+AGG + chr7.4:32037733-32037752 None:intergenic 15.0%
!!! TATTTTATTGACAAATTGTT+TGG + chr7.4:32036971-32036990 None:intergenic 15.0%
!!! TTAATAAGTTGAACTTATTT+AGG - chr7.4:32036017-32036036 MS.gene87062:intron 15.0%
!!! TTTATTGATTATGATATACT+AGG - chr7.4:32036215-32036234 MS.gene87062:intron 15.0%
!!! TTTTTTCTCATAAATTTTTG+TGG - chr7.4:32035070-32035089 MS.gene87062:intron 15.0%
!! AAAAACACATGATTTCATAA+AGG + chr7.4:32037425-32037444 None:intergenic 20.0%
!! AAACAATATAATAAACCAAG+GGG + chr7.4:32035771-32035790 None:intergenic 20.0%
!! AGTTCAACTTATTAATACTT+AGG + chr7.4:32036012-32036031 None:intergenic 20.0%
!! ATGATGATATAGGAAATTTA+TGG - chr7.4:32035617-32035636 MS.gene87062:CDS 20.0%
!! CAATAATGATGAAAGTAATT+AGG - chr7.4:32034923-32034942 MS.gene87062:intron 20.0%
!! GATACATTAATAAGTGATAT+AGG - chr7.4:32035403-32035422 MS.gene87062:intron 20.0%
!! TAAAATAAAACCGATATGAA+AGG - chr7.4:32036984-32037003 MS.gene87062:intron 20.0%
!! TAATGCTTAGTATATATTGA+GGG - chr7.4:32036252-32036271 MS.gene87062:intron 20.0%
!! TGATGATATAGGAAATTTAT+GGG - chr7.4:32035618-32035637 MS.gene87062:CDS 20.0%
!! TTAATGCTTAGTATATATTG+AGG - chr7.4:32036251-32036270 MS.gene87062:intron 20.0%
!! TTATTAATGAATATTGGTGA+AGG - chr7.4:32034516-32034535 MS.gene87062:CDS 20.0%
!!! AATTTTGGAAACAGAATAAT+TGG - chr7.4:32036612-32036631 MS.gene87062:intron 20.0%
!!! GATTTTTTCTTTCAATCATA+CGG - chr7.4:32034964-32034983 MS.gene87062:intron 20.0%
!!! TAAATGAGAAGTATTTTGTT+GGG - chr7.4:32036676-32036695 MS.gene87062:intron 20.0%
!!! TAATAAGTGATATAGGTTTT+AGG - chr7.4:32035410-32035429 MS.gene87062:intron 20.0%
!!! TATACGGTTATAATATGTTT+TGG + chr7.4:32036703-32036722 None:intergenic 20.0%
!!! TATATGTCATACATTGATTT+TGG - chr7.4:32037827-32037846 MS.gene87062:intron 20.0%
!!! TTAAATGAGAAGTATTTTGT+TGG - chr7.4:32036675-32036694 MS.gene87062:intron 20.0%
!!! TTTCATTTTAAAATTTCAGC+TGG - chr7.4:32037953-32037972 MS.gene87062:intron 20.0%
!!! TTTGATCCGAAAAATTTTAT+AGG + chr7.4:32036862-32036881 None:intergenic 20.0%
! AAATCAGTAGATGAGAAAAA+AGG + chr7.4:32038212-32038231 None:intergenic 25.0%
! AACAATATAATAAACCAAGG+GGG + chr7.4:32035770-32035789 None:intergenic 25.0%
! ACAAAAATACCGAAAACAAA+CGG + chr7.4:32036552-32036571 None:intergenic 25.0%
! ATACTATAAGGAATGATTTC+CGG - chr7.4:32038128-32038147 MS.gene87062:intron 25.0%
! ATAGAATTATCGGAAAATTG+TGG + chr7.4:32038057-32038076 None:intergenic 25.0%
! CAAAATAAAGCCTTTCATAT+CGG + chr7.4:32036997-32037016 None:intergenic 25.0%
! CAGATATATCATGAATACAA+GGG - chr7.4:32035730-32035749 MS.gene87062:intron 25.0%
! CTTAAATCAAAGATAAGTGT+GGG - chr7.4:32035324-32035343 MS.gene87062:CDS 25.0%
! TATGATATACTAGGTATAGA+AGG - chr7.4:32036224-32036243 MS.gene87062:intron 25.0%
! TATGGAATACTAATAAGTCT+TGG - chr7.4:32034697-32034716 MS.gene87062:intron 25.0%
! TGCAGTTAGTATAGAATTAT+CGG + chr7.4:32038067-32038086 None:intergenic 25.0%
! TGTCATAGATTGCTAATTTA+AGG + chr7.4:32035441-32035460 None:intergenic 25.0%
! TTAAATTAGCAATCTATGAC+AGG - chr7.4:32035440-32035459 MS.gene87062:intron 25.0%
! TTCCATAAAAGATACTTAAG+AGG + chr7.4:32038406-32038425 None:intergenic 25.0%
! TTTGATAGACATGATGATAT+AGG - chr7.4:32035607-32035626 MS.gene87062:CDS 25.0%
!! GGTATTTTCTTGAACTTTTA+AGG + chr7.4:32037573-32037592 None:intergenic 25.0%
!! TATCAAAGATTTTCATGTGA+TGG + chr7.4:32037033-32037052 None:intergenic 25.0%
!! TTCAAACCATTTTCAAACAT+CGG - chr7.4:32035257-32035276 MS.gene87062:CDS 25.0%
!!! AATTGGACTTTTGTTTATTG+TGG - chr7.4:32034354-32034373 MS.gene87062:CDS 25.0%
!!! TATATAATGCCGTTTGTTTT+CGG - chr7.4:32036540-32036559 MS.gene87062:intron 25.0%
!!! TTTTTTCTCATCTACTGATT+TGG - chr7.4:32038211-32038230 MS.gene87062:intron 25.0%
AAATAAGAGAAACCGAACAT+AGG - chr7.4:32035022-32035041 MS.gene87062:intron 30.0%
AAATGGATCTAAATCTTCCA+TGG + chr7.4:32034769-32034788 None:intergenic 30.0%
ACAATATAATAAACCAAGGG+GGG + chr7.4:32035769-32035788 None:intergenic 30.0%
ACATATTTATCTGAGAAACC+TGG - chr7.4:32035821-32035840 MS.gene87062:intron 30.0%
ACCAAAACACAAGATACAAA+AGG + chr7.4:32037298-32037317 None:intergenic 30.0%
AGAAACTGTTTCATCACTAT+TGG - chr7.4:32037607-32037626 MS.gene87062:intron 30.0%
AGACATTTACTGCAAAGTAA+AGG - chr7.4:32036102-32036121 MS.gene87062:intron 30.0%
AGGAAATATTAGCAATGTTC+TGG + chr7.4:32037553-32037572 None:intergenic 30.0%
AGTAAATGTCTAAGGAAAGA+GGG + chr7.4:32036093-32036112 None:intergenic 30.0%
ATGGGTGCTTACAATTTATA+CGG + chr7.4:32036719-32036738 None:intergenic 30.0%
CAGATTATAATATCAAGACC+AGG + chr7.4:32035842-32035861 None:intergenic 30.0%
CAGCAATGTTAGATGAAAAT+GGG + chr7.4:32036737-32036756 None:intergenic 30.0%
CAGTAAAATATGTCACATGA+AGG - chr7.4:32036515-32036534 MS.gene87062:intron 30.0%
CCTATATCATTGATGTTGAT+CGG - chr7.4:32036281-32036300 MS.gene87062:intron 30.0%
CCTTAAATCAAAGATAAGTG+TGG - chr7.4:32035323-32035342 MS.gene87062:CDS 30.0%
CGGATCAAATTCTATAGTAT+AGG - chr7.4:32036873-32036892 MS.gene87062:intron 30.0%
GAATATGTATCAAGCGAAAA+AGG - chr7.4:32037799-32037818 MS.gene87062:intron 30.0%
GAGATAAATGCCAAAAGAAT+GGG - chr7.4:32034668-32034687 MS.gene87062:intron 30.0%
GCAGATATATCATGAATACA+AGG - chr7.4:32035729-32035748 MS.gene87062:intron 30.0%
GGATGCTATGAATTTATAGT+AGG - chr7.4:32036302-32036321 MS.gene87062:intron 30.0%
TACAGTTTGAATTGCAAATG+TGG - chr7.4:32037078-32037097 MS.gene87062:intron 30.0%
TACTTTGCAGTAAATGTCTA+AGG + chr7.4:32036101-32036120 None:intergenic 30.0%
TCACATGAAGGTTTAGATAA+TGG - chr7.4:32036476-32036495 MS.gene87062:intron 30.0%
TCAGCAATGTTAGATGAAAA+TGG + chr7.4:32036738-32036757 None:intergenic 30.0%
TTCAGTCAACAAAAAACAAG+TGG - chr7.4:32036575-32036594 MS.gene87062:intron 30.0%
TTGTTACTGAGAGAATTTGA+AGG + chr7.4:32034906-32034925 None:intergenic 30.0%
TTGTTGAAATTGTAGCTCAT+TGG + chr7.4:32036829-32036848 None:intergenic 30.0%
! ACAAGTAACCATAAGAGTAT+GGG - chr7.4:32035127-32035146 MS.gene87062:intron 30.0%
! ACCTTTTGTATCTTGTGTTT+TGG - chr7.4:32037294-32037313 MS.gene87062:intron 30.0%
! ATGCATTCTTTAAGGACTTA+TGG - chr7.4:32035546-32035565 MS.gene87062:CDS 30.0%
! CCACACTTATCTTTGATTTA+AGG + chr7.4:32035326-32035345 None:intergenic 30.0%
! GACCTCTTAAGTATCTTTTA+TGG - chr7.4:32038401-32038420 MS.gene87062:CDS 30.0%
! GATGAGAAAAAAGGTTGATT+AGG + chr7.4:32038203-32038222 None:intergenic 30.0%
! TCTGCATTTTCAAATACCAA+GGG + chr7.4:32038296-32038315 None:intergenic 30.0%
! TGCATTCTTTAAGGACTTAT+GGG - chr7.4:32035547-32035566 MS.gene87062:CDS 30.0%
! TTGATTTAAGGTGATGTCTA+AGG + chr7.4:32035314-32035333 None:intergenic 30.0%
!! AAGAAGATTGTTCTAGAGTA+TGG - chr7.4:32038269-32038288 MS.gene87062:intron 30.0%
!! CAATTGACAACCATTTTTCA+AGG + chr7.4:32038155-32038174 None:intergenic 30.0%
!! CTTTTGTTTATTGTGGTACT+AGG - chr7.4:32034361-32034380 MS.gene87062:CDS 30.0%
!!! TGTATCTTGTGTTTTGGTTT+CGG - chr7.4:32037300-32037319 MS.gene87062:intron 30.0%
AATCTATGACAGGACAAACA+GGG - chr7.4:32035450-32035469 MS.gene87062:intron 35.0%
AATTGTACAGTGCATCAACT+TGG - chr7.4:32037448-32037467 MS.gene87062:intron 35.0%
ACTGCTTGATGCATTCTTTA+AGG - chr7.4:32035538-32035557 MS.gene87062:CDS 35.0%
ACTTAAGAGGTCAGAAAGAA+AGG + chr7.4:32038393-32038412 None:intergenic 35.0%
ACTTTATTGCAGAAATCTCC+GGG + chr7.4:32037521-32037540 None:intergenic 35.0%
AGTTCAAATTGTGGCTTATG+TGG - chr7.4:32035906-32035925 MS.gene87062:intron 35.0%
CAAAAGAATGGGATGGAATA+TGG - chr7.4:32034679-32034698 MS.gene87062:intron 35.0%
CAGTAAATGTCTAAGGAAAG+AGG + chr7.4:32036094-32036113 None:intergenic 35.0%
CCGATCAACATCAATGATAT+AGG + chr7.4:32036284-32036303 None:intergenic 35.0%
CGAGATAAATGCCAAAAGAA+TGG - chr7.4:32034667-32034686 MS.gene87062:intron 35.0%
CTCAAAACTTGACCTATGTT+CGG + chr7.4:32035037-32035056 None:intergenic 35.0%
GAAATTGTAGCTCATTGGTA+AGG + chr7.4:32036824-32036843 None:intergenic 35.0%
GAATGATACAGTGACACAAT+TGG + chr7.4:32035175-32035194 None:intergenic 35.0%
GACAAGTAACCATAAGAGTA+TGG - chr7.4:32035126-32035145 MS.gene87062:intron 35.0%
GACTTATGGGAAGTAAGATA+TGG - chr7.4:32035560-32035579 MS.gene87062:CDS 35.0%
GACTTTATTGCAGAAATCTC+CGG + chr7.4:32037522-32037541 None:intergenic 35.0%
GATTCGATCAAGTAGAAGTA+GGG + chr7.4:32037897-32037916 None:intergenic 35.0%
GTAAAGAATGTTACCAGAAG+AGG + chr7.4:32034452-32034471 None:intergenic 35.0%
GTTTCCTAGAGTTCAAATTG+TGG - chr7.4:32035897-32035916 MS.gene87062:intron 35.0%
TAAATCACACTAACATCGCA+AGG + chr7.4:32036199-32036218 None:intergenic 35.0%
TAAATGCCAAAAGAATGGGA+TGG - chr7.4:32034672-32034691 MS.gene87062:intron 35.0%
TAAGCCACAATTTGAACTCT+AGG + chr7.4:32035904-32035923 None:intergenic 35.0%
TCATACAAAGTCCTCAATCT+TGG + chr7.4:32036775-32036794 None:intergenic 35.0%
TCTTACCTTGCATTTGCAAA+AGG - chr7.4:32034807-32034826 MS.gene87062:CDS 35.0%
TGAAAATGCAGAGAAATTCC+TGG - chr7.4:32038304-32038323 MS.gene87062:intron 35.0%
TGCAAAAAGATAGAGCAAGA+CGG - chr7.4:32036411-32036430 MS.gene87062:intron 35.0%
TTACTGAGAGAATTTGAAGG+AGG + chr7.4:32034903-32034922 None:intergenic 35.0%
TTGTGAGGAATATACTAGCA+AGG - chr7.4:32037172-32037191 MS.gene87062:intron 35.0%
TTTCTTCATACTGCAGAACT+AGG - chr7.4:32037125-32037144 MS.gene87062:intron 35.0%
! ACTCTGTTGTTGTTCTGATA+TGG - chr7.4:32036332-32036351 MS.gene87062:intron 35.0%
! AGAATGCATCAAGCAGTTTT+AGG + chr7.4:32035535-32035554 None:intergenic 35.0%
! ATTTAAGGTGATGTCTAAGG+TGG + chr7.4:32035311-32035330 None:intergenic 35.0%
! CATATTCCATCCCATTCTTT+TGG + chr7.4:32034681-32034700 None:intergenic 35.0%
! CTCTGCATTTTCAAATACCA+AGG + chr7.4:32038297-32038316 None:intergenic 35.0%
! CTTGGTAACATGTTATATGC+TGG - chr7.4:32034715-32034734 MS.gene87062:intron 35.0%
! GTCATTTCTGAGAAGAAAAG+TGG + chr7.4:32037488-32037507 None:intergenic 35.0%
! TAGTTCTGCAGTATGAAGAA+AGG + chr7.4:32037126-32037145 None:intergenic 35.0%
! TCTTGCACTGCAAACATTTT+GGG + chr7.4:32038253-32038272 None:intergenic 35.0%
! TTCTTGCACTGCAAACATTT+TGG + chr7.4:32038254-32038273 None:intergenic 35.0%
! TTTAAGGTGATGTCTAAGGT+GGG + chr7.4:32035310-32035329 None:intergenic 35.0%
!! GTAGTAGAATTTGTTGCTCT+AGG + chr7.4:32038093-32038112 None:intergenic 35.0%
!! TGATTTTAAGTGACAGCAGA+TGG - chr7.4:32035642-32035661 MS.gene87062:CDS 35.0%
!!! TCAAGCAGTTTTAGGTATGA+AGG + chr7.4:32035527-32035546 None:intergenic 35.0%
AAACGCTTTGACCAAGATTG+AGG - chr7.4:32036761-32036780 MS.gene87062:intron 40.0%
AAGAATGTTACCAGAAGAGG+CGG + chr7.4:32034449-32034468 None:intergenic 40.0%
AAGTTGGATTAAGCCAATGG+AGG + chr7.4:32037870-32037889 None:intergenic 40.0%
ACAAACAAACCTGTGCACTT+TGG - chr7.4:32035671-32035690 MS.gene87062:intron 40.0%
ACCTAGGAGGAAATCTTAGT+AGG - chr7.4:32036643-32036662 MS.gene87062:intron 40.0%
ACTGACACATGTCGGATATT+GGG + chr7.4:32037385-32037404 None:intergenic 40.0%
AGATAACTAACCTCTGTGTC+AGG + chr7.4:32037647-32037666 None:intergenic 40.0%
AGATAAGTGTGGGAAGTTTG+TGG - chr7.4:32035334-32035353 MS.gene87062:CDS 40.0%
AGTTGGATTAAGCCAATGGA+GGG + chr7.4:32037869-32037888 None:intergenic 40.0%
ATCTATGACAGGACAAACAG+GGG - chr7.4:32035451-32035470 MS.gene87062:intron 40.0%
CAACAAAAAACAAGTGGCAG+TGG - chr7.4:32036581-32036600 MS.gene87062:intron 40.0%
CAACTCAAACTATTGCGTCA+AGG - chr7.4:32034875-32034894 MS.gene87062:intron 40.0%
CAATCTATGACAGGACAAAC+AGG - chr7.4:32035449-32035468 MS.gene87062:intron 40.0%
CCTAGGAGGAAATCTTAGTA+GGG - chr7.4:32036644-32036663 MS.gene87062:intron 40.0%
CGATTCATTGTGTCACATGA+AGG - chr7.4:32036464-32036483 MS.gene87062:intron 40.0%
CGATTCGATCAAGTAGAAGT+AGG + chr7.4:32037898-32037917 None:intergenic 40.0%
CTAAGATTTCCTCCTAGGTT+CGG + chr7.4:32036642-32036661 None:intergenic 40.0%
GAAACAGCTCTGTCATAACA+TGG + chr7.4:32035882-32035901 None:intergenic 40.0%
GATAAAAGATCCTGACACAG+AGG - chr7.4:32037634-32037653 MS.gene87062:intron 40.0%
GATTTCCGGACCTTGAAAAA+TGG - chr7.4:32038142-32038161 MS.gene87062:intron 40.0%
GCACTTCATTGGACAAGTTT+GGG - chr7.4:32038003-32038022 MS.gene87062:intron 40.0%
GGCTAAGACAATGACTTGAT+CGG - chr7.4:32034985-32035004 MS.gene87062:intron 40.0%
GGTGAACCGATGTTTGAAAA+TGG + chr7.4:32035266-32035285 None:intergenic 40.0%
GTAGTATCTTGTACGGTTCA+CGG + chr7.4:32035287-32035306 None:intergenic 40.0%
TGCACTTCATTGGACAAGTT+TGG - chr7.4:32038002-32038021 MS.gene87062:intron 40.0%
TGGAAGTTGGATTAAGCCAA+TGG + chr7.4:32037873-32037892 None:intergenic 40.0%
TTGATATCGTGCGACTAGAA+AGG + chr7.4:32034858-32034877 None:intergenic 40.0%
! AACCATAAGAGTATGGGCTT+CGG - chr7.4:32035133-32035152 MS.gene87062:intron 40.0%
! GTGTCACTGTATCATTCATG+AGG - chr7.4:32035178-32035197 MS.gene87062:CDS 40.0%
! TATGAAGGAGGTGGATTTAC+AGG + chr7.4:32035512-32035531 None:intergenic 40.0%
! TCTTCTCAAAAGTGTGAAGC+TGG + chr7.4:32037265-32037284 None:intergenic 40.0%
! TTAAGGTGATGTCTAAGGTG+GGG + chr7.4:32035309-32035328 None:intergenic 40.0%
! TTCAGCCTTTTGCAAATGCA+AGG + chr7.4:32034815-32034834 None:intergenic 40.0%
! TTGAAGTGTCAGTGCTACAT+AGG + chr7.4:32037350-32037369 None:intergenic 40.0%
!! CACACTTTTGAGAAGAAGGT+TGG - chr7.4:32037269-32037288 MS.gene87062:intron 40.0%
!! GCTTCACACTTTTGAGAAGA+AGG - chr7.4:32037265-32037284 MS.gene87062:intron 40.0%
!! GTAGAATTTGTTGCTCTAGG+AGG + chr7.4:32038090-32038109 None:intergenic 40.0%
!!! AGCAGTTTTAGGTATGAAGG+AGG + chr7.4:32035524-32035543 None:intergenic 40.0%
!!! AGTTTTAGGTATGAAGGAGG+TGG + chr7.4:32035521-32035540 None:intergenic 40.0%
!!! GACAACCATTTTTCAAGGTC+CGG + chr7.4:32038150-32038169 None:intergenic 40.0%
AATAGACAGTATTCCCCCCT+TGG - chr7.4:32035753-32035772 MS.gene87062:intron 45.0%
ACAGCTCTGTCATAACATGG+TGG + chr7.4:32035879-32035898 None:intergenic 45.0%
AGATGTGTGTGCACTTTGTG+AGG - chr7.4:32037157-32037176 MS.gene87062:intron 45.0%
AGGTGGGGTAGTATCTTGTA+CGG + chr7.4:32035294-32035313 None:intergenic 45.0%
AGTTTCTTCGCAAAACTCGC+AGG + chr7.4:32037594-32037613 None:intergenic 45.0%
ATAATTGGCAGACCGAACCT+AGG - chr7.4:32036627-32036646 MS.gene87062:intron 45.0%
ATGAGATTCCTGCTATGGTG+AGG - chr7.4:32034742-32034761 MS.gene87062:intron 45.0%
ATTATGAGCTTCTGCGTACG+AGG - chr7.4:32035210-32035229 MS.gene87062:CDS 45.0%
ATTGGACAAGTTTGGGAGCA+AGG - chr7.4:32038010-32038029 MS.gene87062:intron 45.0%
CACCATAGCAGGAATCTCAT+GGG + chr7.4:32034742-32034761 None:intergenic 45.0%
CACTGACACATGTCGGATAT+TGG + chr7.4:32037386-32037405 None:intergenic 45.0%
CACTGCATTACATGCTTGCA+AGG - chr7.4:32038343-32038362 MS.gene87062:intron 45.0%
CCCTACTAAGATTTCCTCCT+AGG + chr7.4:32036647-32036666 None:intergenic 45.0%
CGATCAAGTAGAAGTAGGGT+TGG + chr7.4:32037893-32037912 None:intergenic 45.0%
GAGAGTGACTCAATCAGTGT+TGG + chr7.4:32035098-32035117 None:intergenic 45.0%
GTAGAAGTAGGGTTGGAAGT+TGG + chr7.4:32037886-32037905 None:intergenic 45.0%
GTTGGATTAAGCCAATGGAG+GGG + chr7.4:32037868-32037887 None:intergenic 45.0%
TATCCGACATGTGTCAGTGT+CGG - chr7.4:32037387-32037406 MS.gene87062:intron 45.0%
TCACAAAGTGCACACACATC+TGG + chr7.4:32037158-32037177 None:intergenic 45.0%
TCACCATAGCAGGAATCTCA+TGG + chr7.4:32034743-32034762 None:intergenic 45.0%
TGGAGGGGTCAAAACAAAGA+TGG + chr7.4:32037853-32037872 None:intergenic 45.0%
TGTACAGTGCATCAACTTGG+TGG - chr7.4:32037451-32037470 MS.gene87062:intron 45.0%
TTGCAGCAATGATGCTCCAA+GGG + chr7.4:32034423-32034442 None:intergenic 45.0%
TTTGCAGCAATGATGCTCCA+AGG + chr7.4:32034424-32034443 None:intergenic 45.0%
! GCAGTGGCAGAGATCAATTT+TGG - chr7.4:32036597-32036616 MS.gene87062:intron 45.0%
! GCTGAAAGTGTGCACTTCAT+TGG - chr7.4:32037992-32038011 MS.gene87062:intron 45.0%
! TGCACAGGTTTGTTTGTCGA+TGG + chr7.4:32035668-32035687 None:intergenic 45.0%
! TGTGGTACTAGGTTTTGCTC+TGG - chr7.4:32034372-32034391 MS.gene87062:CDS 45.0%
!! TCTGTCATAACATGGTGGAC+AGG + chr7.4:32035874-32035893 None:intergenic 45.0%
!! TGTTCTAGAGTATGGTCCCT+TGG - chr7.4:32038277-32038296 MS.gene87062:intron 45.0%
!!! CTTTGTTTTGACCCCTCCAT+TGG - chr7.4:32037854-32037873 MS.gene87062:intron 45.0%
CAAGAGGACTTGCAAACCCT+TGG - chr7.4:32034404-32034423 MS.gene87062:CDS 50.0%
CACTGTCCTCACACAGTGAT+GGG + chr7.4:32035700-32035719 None:intergenic 50.0%
GAAATGACCTCAGTTCAGCC+CGG - chr7.4:32037500-32037519 MS.gene87062:intron 50.0%
GTCCCATGAGATTCCTGCTA+TGG - chr7.4:32034737-32034756 MS.gene87062:intron 50.0%
TGCCGAAGCCCATACTCTTA+TGG + chr7.4:32035138-32035157 None:intergenic 50.0%
TGTCCGACACTGACACATGT+CGG + chr7.4:32037393-32037412 None:intergenic 50.0%
AGTATGGGCTTCGGCATACG+AGG - chr7.4:32035142-32035161 MS.gene87062:intron 55.0%
ATTGGCAGACCGAACCTAGG+AGG - chr7.4:32036630-32036649 MS.gene87062:intron 55.0%
CGTGCGACTAGAAAGGTCTG+AGG + chr7.4:32034851-32034870 None:intergenic 55.0%
GAAATCTCCGGGCTGAACTG+AGG + chr7.4:32037510-32037529 None:intergenic 55.0%
GCACTGTCCTCACACAGTGA+TGG + chr7.4:32035701-32035720 None:intergenic 55.0%
TCCATGGACCTCACCATAGC+AGG + chr7.4:32034753-32034772 None:intergenic 55.0%
TCCTGCTATGGTGAGGTCCA+TGG - chr7.4:32034749-32034768 MS.gene87062:intron 55.0%
! GCTCTGGCTTGTGATGCAAG+AGG - chr7.4:32034388-32034407 MS.gene87062:CDS 55.0%
! TGTCCTCACACAGTGATGGG+TGG + chr7.4:32035697-32035716 None:intergenic 55.0%
GATGGGTGGCCAAAGTGCAC+AGG + chr7.4:32035683-32035702 None:intergenic 60.0%
GCTGCAAACTCCGCCTCTTC+TGG - chr7.4:32034436-32034455 MS.gene87062:CDS 60.0%
TGGCCACCCATCACTGTGTG+AGG - chr7.4:32035691-32035710 MS.gene87062:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 32034343 32038475 32034343 ID=MS.gene87062
chr7.4 mRNA 32034343 32038475 32034343 ID=MS.gene87062.t1;Parent=MS.gene87062
chr7.4 exon 32038361 32038475 32038361 ID=MS.gene87062.t1.exon1;Parent=MS.gene87062.t1
chr7.4 CDS 32038361 32038475 32038361 ID=cds.MS.gene87062.t1;Parent=MS.gene87062.t1
chr7.4 exon 32035532 32035677 32035532 ID=MS.gene87062.t1.exon2;Parent=MS.gene87062.t1
chr7.4 CDS 32035532 32035677 32035532 ID=cds.MS.gene87062.t1;Parent=MS.gene87062.t1
chr7.4 exon 32035163 32035360 32035163 ID=MS.gene87062.t1.exon3;Parent=MS.gene87062.t1
chr7.4 CDS 32035163 32035360 32035163 ID=cds.MS.gene87062.t1;Parent=MS.gene87062.t1
chr7.4 exon 32034787 32034846 32034787 ID=MS.gene87062.t1.exon4;Parent=MS.gene87062.t1
chr7.4 CDS 32034787 32034846 32034787 ID=cds.MS.gene87062.t1;Parent=MS.gene87062.t1
chr7.4 exon 32034343 32034552 32034343 ID=MS.gene87062.t1.exon5;Parent=MS.gene87062.t1
chr7.4 CDS 32034343 32034552 32034343 ID=cds.MS.gene87062.t1;Parent=MS.gene87062.t1
Gene Sequence

>MS.gene87062

ATGGAAGGGAGAATTGGACTTTTGTTTATTGTGGTACTAGGTTTTGCTCTGGCTTGTGATGCAAGAGGACTTGCAAACCCTTGGAGCATCATTGCTGCAAACTCCGCCTCTTCTGGTAACATTCTTTACTGTTACTGATATCATTCTTGTTTGCAGTATTCTAAATCTTCTATTTATTAATGAATATTGGTGAAGGAGAAAAAGTTTAAGTAAATGCATTCTGTTATGCTCGAGCGCTTACTTGTTTATTAGTGAATATGAGTTGCAATCAATGATTAAGTAAGCTTAGATTTGATTAAAATTAAGGCATAACAGTTTCTAAAACGAGATAAATGCCAAAAGAATGGGATGGAATATGGAATACTAATAAGTCTTGGTAACATGTTATATGCTGGTCCCATGAGATTCCTGCTATGGTGAGGTCCATGGAAGATTTAGATCCATTTTGAATATATTATAGGTAGTCTTACCTTGCATTTGCAAAAGGCTGAATTTACGACTCAAACCTCAGACCTTTCTAGTCGCACGATATCAACTCAAACTATTGCGTCAAGGCTCCTCCTTCAAATTCTCTCAGTAACAATAATGATGAAAGTAATTAGGTACAAATGTATAATTGCTGATTTTTTCTTTCAATCATACGGCTAAGACAATGACTTGATCGGTGTTGATTCAACAAAAATAAGAGAAACCGAACATAGGTCAAGTTTTGAGACATTACTGTGTTTTTTTTCTCATAAATTTTTGTGGAACCAACACTGATTGAGTCACTCTCATTTGTGAGACAAGTAACCATAAGAGTATGGGCTTCGGCATACGAGGAGTAGCACCAATTGTGTCACTGTATCATTCATGAGGACGAGTAATATTATGAGCTTCTGCGTACGAGGAGCAACATCAATTGTTATTAGAGTTTCAAACCATTTTCAAACATCGGTTCACCGTGAACCGTACAAGATACTACCCCACCTTAGACATCACCTTAAATCAAAGATAAGTGTGGGAAGTTTGTGGTTTCTACTTTGTAGTTTAGAGTCATAAAAACATGATATTTTTGTAGGATACATTAATAAGTGATATAGGTTTTAGGCATGTCCTTAAATTAGCAATCTATGACAGGACAAACAGGGGTCTCAAAGTCTTCAATGAGTTAACTGACAATATGACCTGTAAATCCACCTCCTTCATACCTAAAACTGCTTGATGCATTCTTTAAGGACTTATGGGAAGTAAGATATGGATATTTCTTGTACTCTGTCTATGATTTGATAGACATGATGATATAGGAAATTTATGGGATGATTTTAAGTGACAGCAGATGGCCATCGACAAACAAACCTGTGCACTTTGGCCACCCATCACTGTGTGAGGACAGTGCGATGATATGCAGATATATCATGAATACAAGGGAATAGACAGTATTCCCCCCTTGGTTTATTATATTGTTTATATTGAAGGATTTCGTATGAATATTTGTTACATATTTATCTGAGAAACCTGGTCTTGATATTATAATCTGAACTCATGACCTGTCCACCATGTTATGACAGAGCTGTTTCCTAGAGTTCAAATTGTGGCTTATGTGGTTCTTGTTGTTAAGTTGATTATGAATATAAGAATGTGTAAATGAGTATGAATGAGATTATTATAGTTGACTACTATTAGTCCTAAGTATTAATAAGTTGAACTTATTTAGGCTTGATCACACGCACGCGCGTACACACACACACACACACATAAATATAGACCCTCTTTCCTTAGACATTTACTGCAAAGTAAAGGTCTACATACCAATTATTAAGAAATCTACTTTTGCATTTCATACATATCAATGCATAACAAAACTTGTGAAACCTTGCGATGTTAGTGTGATTTATTGATTATGATATACTAGGTATAGAAGGTACATTAATGCTTAGTATATATTGAGGGTAAACTCCTATATCATTGATGTTGATCGGATGCTATGAATTTATAGTAGGTGAGACAACTCTGTTGTTGTTCTGATATGGAAAATACTTTTATGTACATTTGTTGAAAAAATAAAGGATAATTTAATTGTGAATATTGCAAAAAGATAGAGCAAGACGGAACGCTAGTCAATCATGAGAACAACATAAGCGATTCATTGTGTCACATGAAGGTTTAGATAATGGTTCGTGCTTTTAAAAACAGTAAAATATGTCACATGAAGGTTTATATAATGCCGTTTGTTTTCGGTATTTTTGTCTGTTCAGTCAACAAAAAACAAGTGGCAGTGGCAGAGATCAATTTTGGAAACAGAATAATTGGCAGACCGAACCTAGGAGGAAATCTTAGTAGGGACTAAAACTTAAATGAGAAGTATTTTGTTGGGACCAAAACATATTATAACCGTATAAATTGTAAGCACCCATTTTCATCTAACATTGCTGATTGAAACGCTTTGACCAAGATTGAGGACTTTGTATGACATTATTATGAAATTTTTCTTCTAAACCTTACCAATGAGCTACAATTTCAACAATAGTTTTTTTCCTATAAAATTTTTCGGATCAAATTCTATAGTATAGGTGATTGATGCATAAAAATACAAGTCGAAAACAACTTATTGACATATCGTAAGTTATTTTTTATAAGTGTATTCCAAACAATTTGTCAATAAAATAAAACCGATATGAAAGGCTTTATTTTGTTATGTCATAAGACCATCACATGAAAATCTTTGATACTTGCAAGAATATTTCTCTGTTAAATACAGTTTGAATTGCAAATGTGGCATGCATAATTCATTTTGTTTACCTTTCTTCATACTGCAGAACTAGGCAGAATACCAGATGTGTGTGCACTTTGTGAGGAATATACTAGCAAGGCACTTGATTATATAAATGAAAACAAGACTCAGAGTGAGATCATCGATATTCTTCATAATACTTGTCACCAGCTTCACACTTTTGAGAAGAAGGTTGGTCACCTTTTGTATCTTGTGTTTTGGTTTCGGTATTGTTCTCAGTCGTTGTGATAACCTATGTAGCACTGACACTTCAAATTGAAATCGCGCCCAATATCCGACATGTGTCAGTGTCGGACACTTATAGAACCTTTATGAAATCATGTGTTTTTCTGAATTGTACAGTGCATCAACTTGGTGGACTATTATCTGCCACTTTTCTTCTCAGAAATGACCTCAGTTCAGCCCGGAGATTTCTGCAATAAAGTCAATCTCTGCCAGAACATTGCTAATATTTCCTTAAAAGTTCAAGAAAATACCTGCGAGTTTTGCGAAGAAACTGTTTCATCACTATTGGATAAGATAAAAGATCCTGACACAGAGGTTAGTTATCTCATCTTTGTGCTATCTAGTTTAAATTAGACTATCTTTTATCTAGTAAAGTCGATGTTTTGCTGCCTAATGAAAAGAAATTTTGATAATGATTAATATATCAAAGTATATGTACAATATTTTAGTAGGAATGAGAATATGTATCAAGCGAAAAAGGAAAGATATATGTCATACATTGATTTTGGCCATCTTTGTTTTGACCCCTCCATTGGCTTAATCCAACTTCCAACCCTACTTCTACTTGATCGAATCGAAATTACATTTTGTCGAATGAAATGCTTACCTTTTTTTCATTTTAAAATTTCAGCTGGAGATAATTGAGATACTGCTGAAAGTGTGCACTTCATTGGACAAGTTTGGGAGCAAGGTAAGAAAAATATGAGAATTTACCACAATTTTCCGATAATTCTATACTAACTGCACCTCCTAGAGCAACAAATTCTACTACTACAATTATCTTCATATACTATAAGGAATGATTTCCGGACCTTGAAAAATGGTTGTCAATTGTATAGACTCATAAAAATGTAATTTTCCTAATCAACCTTTTTTCTCATCTACTGATTTGGTTTTTTTCGTTACGCTCCCAAAATGTTTGCAGTGCAAGAAGATTGTTCTAGAGTATGGTCCCTTGGTATTTGAAAATGCAGAGAAATTCCTGGAGAAGACAGATATATGCACTGCATTACATGCTTGCAAGGAATCAACAGTAGTACTTGAAAAGTCCTTTCTTTCTGACCTCTTAAGTATCTTTTATGGAAACAATATTTTTATGAGAATGGTGCAATTGCTGAAGATTGCTCTATTTTGA
Protein sequence

>MS.gene87062.t1

MEGRIGLLFIVVLGFALACDARGLANPWSIIAANSASSELGRIPDVCALCEEYTSKALDYINENKTQSEIIDILHNTCHQLHTFEKKCINLVDYYLPLFFSEMTSVQPGDFCNKVNLCQNIANISLKVQENTCEFCEETVSSLLDKIKDPDTELEIIEILLKVCTSLDKFGSKCKKIVLEYGPLVFENAEKFLEKTDICTALHACKESTVVLEKSFLSDLLSIFYGNNIFMRMVQLLKIALF