AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87088.t1 MTR_0121s0080 86.864 236 31 0 1 236 1 236 4.96e-151 420
MS.gene87088.t1 MTR_7g062350 83.333 222 36 1 16 236 27 248 3.95e-134 377
MS.gene87088.t1 MTR_8g043650 72.152 237 65 1 1 236 1 237 1.14e-121 345
MS.gene87088.t1 MTR_1g105920 73.973 219 57 0 1 219 1 219 1.82e-115 330
MS.gene87088.t1 MTR_1g105910 72.000 225 63 0 1 225 1 225 7.06e-115 328
MS.gene87088.t1 MTR_2g030740 73.059 219 59 0 1 219 1 219 1.58e-113 325
MS.gene87088.t1 MTR_1g012570 72.146 219 61 0 1 219 1 219 2.13e-113 325
MS.gene87088.t1 MTR_1g108510 68.936 235 55 3 1 225 1 227 5.56e-111 318
MS.gene87088.t1 MTR_3g030770 68.936 235 55 3 1 225 1 227 1.19e-109 315
MS.gene87088.t1 MTR_2g093190 69.362 235 54 3 1 225 1 227 2.99e-109 313
MS.gene87088.t1 MTR_3g052920 69.406 219 67 0 1 219 1 219 7.80e-108 310
MS.gene87088.t1 MTR_1g108580 68.220 236 55 3 1 225 1 227 1.06e-106 307
MS.gene87088.t1 MTR_1g105905 65.909 220 74 1 18 236 1 220 2.80e-101 293
MS.gene87088.t1 MTR_1g075600 63.111 225 83 0 1 225 1 225 1.11e-100 292
MS.gene87088.t1 MTR_2g085280 61.441 236 90 1 1 235 1 236 2.31e-100 291
MS.gene87088.t1 MTR_2g085250 61.441 236 90 1 1 235 1 236 9.79e-100 290
MS.gene87088.t1 MTR_1g077360 61.778 225 86 0 1 225 1 225 1.88e-98 286
MS.gene87088.t1 MTR_5g053390 64.000 225 81 0 1 225 1 225 3.04e-98 286
MS.gene87088.t1 MTR_5g055100 59.072 237 96 1 1 236 1 237 8.81e-97 282
MS.gene87088.t1 MTR_5g045560 61.333 225 87 0 1 225 1 225 1.20e-95 280
MS.gene87088.t1 MTR_3g052870 63.927 219 60 1 1 219 1 200 1.66e-92 271
MS.gene87088.t1 MTR_1g106070 72.376 181 50 0 1 181 1 181 3.36e-92 269
MS.gene87088.t1 MTR_3g030780 82.576 132 23 0 1 132 1 132 6.02e-74 221
MS.gene87088.t1 MTR_0121s0100 74.242 132 34 0 1 132 1 132 2.82e-64 196
MS.gene87088.t1 MTR_1g075570 55.056 178 66 1 18 195 1 164 1.29e-53 170
MS.gene87088.t1 MTR_3g080940 52.632 152 72 0 9 160 9 160 1.03e-52 169
MS.gene87088.t1 MTR_3g067910 61.765 102 38 1 21 121 2 103 3.32e-38 129
MS.gene87088.t1 MTR_1g108500 71.134 97 7 1 22 118 110 185 4.91e-36 130
MS.gene87088.t1 MTR_2g105290 38.650 163 96 1 5 167 8 166 1.38e-34 122
MS.gene87088.t1 MTR_8g086290 38.462 182 96 3 5 183 8 176 2.54e-34 121
MS.gene87088.t1 MTR_7g028448 44.203 138 65 3 22 159 25 150 1.26e-27 103
MS.gene87088.t1 MTR_4g036915 44.203 138 65 3 22 159 25 150 1.26e-27 103
MS.gene87088.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 6.92e-26 96.3
MS.gene87088.t1 MTR_1g054265 45.455 110 58 1 9 118 2 109 1.78e-23 93.2
MS.gene87088.t1 MTR_4g127140 32.927 164 96 3 22 175 25 184 2.89e-23 93.2
MS.gene87088.t1 MTR_1g047550 44.860 107 57 1 9 115 2 106 4.97e-23 92.4
MS.gene87088.t1 MTR_4g131030 39.200 125 61 2 9 118 2 126 2.47e-22 91.3
MS.gene87088.t1 MTR_8g079502 43.636 110 60 1 9 118 2 109 2.94e-22 90.5
MS.gene87088.t1 MTR_3g067915 62.687 67 25 0 60 126 30 96 7.21e-22 86.7
MS.gene87088.t1 MTR_1g063160 44.554 101 54 1 9 109 2 100 4.70e-21 87.0
MS.gene87088.t1 MTR_3g067870 63.492 63 23 0 16 78 83 145 3.62e-20 84.3
MS.gene87088.t1 MTR_8g051580 55.072 69 31 0 9 77 2 70 5.04e-20 84.3
MS.gene87088.t1 MTR_8g046350 53.623 69 32 0 9 77 2 70 4.87e-19 81.3
MS.gene87088.t1 MTR_4g094632 39.091 110 65 1 9 118 2 109 3.74e-18 79.0
MS.gene87088.t1 MTR_4g094638 39.623 106 63 1 9 113 2 107 4.20e-18 79.3
MS.gene87088.t1 MTR_4g093970 32.843 204 101 7 11 186 30 225 3.67e-17 78.2
MS.gene87088.t1 MTR_3g005530 48.571 70 34 1 7 76 2 69 2.13e-16 75.9
MS.gene87088.t1 MTR_1g053070 39.806 103 59 2 7 108 2 102 6.10e-16 75.1
MS.gene87088.t1 MTR_8g022970 32.418 182 103 6 2 177 13 180 7.82e-16 73.2
MS.gene87088.t1 MTR_4g102530 49.231 65 33 0 12 76 5 69 9.65e-16 73.6
MS.gene87088.t1 MTR_3g452380 36.792 106 57 1 3 108 11 106 9.80e-16 74.3
MS.gene87088.t1 MTR_3g102570 42.157 102 56 3 9 109 2 101 2.31e-15 74.3
MS.gene87088.t1 MTR_8g033270 47.143 70 35 1 7 76 2 69 4.74e-15 72.4
MS.gene87088.t1 MTR_5g066180 46.970 66 35 0 11 76 4 69 7.57e-15 71.6
MS.gene87088.t1 MTR_8g087860 47.143 70 35 1 7 76 18 85 1.32e-14 71.2
MS.gene87088.t1 MTR_0003s0590 40.476 84 48 1 7 90 2 83 1.43e-14 71.2
MS.gene87088.t1 MTR_8g033220 42.683 82 46 1 12 92 5 86 1.89e-14 70.5
MS.gene87088.t1 MTR_8g033220 42.683 82 46 1 12 92 5 86 2.11e-14 70.5
MS.gene87088.t1 MTR_1g101970 47.143 70 35 1 7 76 2 69 2.24e-14 69.3
MS.gene87088.t1 MTR_2g017865 47.143 70 35 1 7 76 17 84 2.84e-14 70.5
MS.gene87088.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 3.75e-14 70.9
MS.gene87088.t1 MTR_4g109830 43.662 71 37 2 7 76 2 70 4.47e-14 69.3
MS.gene87088.t1 MTR_2g009890 44.286 70 37 1 7 76 2 69 4.51e-14 70.1
MS.gene87088.t1 MTR_5g032520 45.588 68 36 1 11 77 4 71 6.48e-14 68.9
MS.gene87088.t1 MTR_7g075870 46.154 65 35 0 12 76 5 69 6.60e-14 68.6
MS.gene87088.t1 MTR_6g464720 45.070 71 36 2 7 76 2 70 7.56e-14 69.3
MS.gene87088.t1 MTR_2g461710 51.724 58 26 1 7 64 2 57 8.17e-14 64.7
MS.gene87088.t1 MTR_5g032150 45.588 68 36 1 11 77 4 71 8.54e-14 68.6
MS.gene87088.t1 MTR_7g016630 34.746 118 64 5 7 114 2 116 1.29e-13 68.6
MS.gene87088.t1 MTR_3g109930 33.577 137 81 2 27 159 20 150 1.40e-13 67.0
MS.gene87088.t1 MTR_5g031000 44.286 70 37 1 7 76 2 69 2.28e-13 67.4
MS.gene87088.t1 MTR_5g031000 44.286 70 37 1 7 76 2 69 2.43e-13 67.4
MS.gene87088.t1 MTR_7g016600 45.070 71 36 2 7 76 2 70 3.00e-13 67.4
MS.gene87088.t1 MTR_6g015975 45.070 71 36 2 7 76 2 70 3.16e-13 67.4
MS.gene87088.t1 MTR_5g021270 47.222 72 34 2 7 76 2 71 3.97e-13 67.0
MS.gene87088.t1 MTR_5g021270 47.222 72 34 2 7 76 2 71 3.99e-13 67.0
MS.gene87088.t1 MTR_1g038300 44.444 72 36 2 7 76 2 71 4.75e-13 66.6
MS.gene87088.t1 MTR_4g109810 28.395 243 127 13 7 225 2 221 4.77e-13 66.6
MS.gene87088.t1 MTR_8g066260 42.254 71 38 2 7 76 2 70 5.41e-13 66.6
MS.gene87088.t1 MTR_8g097090 37.255 102 58 3 7 104 2 101 5.77e-13 66.6
MS.gene87088.t1 MTR_5g066960 45.763 59 30 1 7 65 2 58 7.66e-13 62.0
MS.gene87088.t1 MTR_7g075870 45.455 66 35 1 12 76 5 70 8.72e-13 65.5
MS.gene87088.t1 MTR_3g113030 46.667 60 32 0 12 71 5 64 1.01e-12 65.9
MS.gene87088.t1 MTR_3g084980 35.455 110 65 3 7 112 2 109 1.15e-12 65.9
MS.gene87088.t1 MTR_1g029670 45.588 68 34 2 7 74 2 66 1.55e-12 64.3
MS.gene87088.t1 MTR_5g046870 43.662 71 37 2 7 76 2 70 1.56e-12 62.8
MS.gene87088.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 2.11e-12 63.9
MS.gene87088.t1 MTR_5g046790 34.021 97 46 2 9 90 2 95 2.82e-12 64.3
MS.gene87088.t1 MTR_3g088615 45.588 68 34 2 7 74 2 66 3.21e-12 63.5
MS.gene87088.t1 MTR_7g075850 41.667 72 38 2 7 76 2 71 1.08e-11 63.2
MS.gene87088.t1 MTR_4g051538 26.601 203 130 6 5 204 5 191 3.50e-11 61.6
MS.gene87088.t1 MTR_1g041615 42.857 77 43 1 20 95 17 93 4.02e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87088.t1 AT5G60440 53.293 167 75 2 5 168 3 169 7.74e-52 170
MS.gene87088.t1 AT1G01530 43.902 164 89 2 4 166 2 163 1.40e-36 129
MS.gene87088.t1 AT2G24840 44.444 162 83 3 9 166 63 221 1.51e-36 129
MS.gene87088.t1 AT1G65360 36.073 219 116 7 5 205 3 215 2.73e-35 125
MS.gene87088.t1 AT4G36590 37.912 182 105 3 5 179 3 183 1.00e-30 114
MS.gene87088.t1 AT3G04100 32.335 167 99 4 2 159 7 168 3.81e-23 93.6
MS.gene87088.t1 AT2G34440 39.823 113 67 1 9 121 2 113 6.14e-22 89.4
MS.gene87088.t1 AT3G66656 37.815 119 70 1 9 123 2 120 9.25e-20 83.6
MS.gene87088.t1 AT1G72350 52.055 73 33 1 9 81 43 113 1.54e-18 81.6
MS.gene87088.t1 AT1G28460 31.111 180 110 4 5 177 4 176 1.78e-18 80.5
MS.gene87088.t1 AT4G09960 38.462 104 52 2 5 108 26 117 1.10e-17 79.7
MS.gene87088.t1 AT4G09960 38.235 102 51 2 7 108 2 91 1.23e-17 79.0
MS.gene87088.t1 AT4G09960 38.235 102 51 2 7 108 2 91 1.62e-17 79.0
MS.gene87088.t1 AT4G09960 38.235 102 51 2 7 108 3 92 1.74e-17 79.0
MS.gene87088.t1 AT4G09960 38.462 104 52 2 5 108 95 186 2.24e-17 80.1
MS.gene87088.t1 AT4G09960 38.235 102 51 2 7 108 12 101 2.35e-17 78.6
MS.gene87088.t1 AT2G45660 33.083 133 64 2 12 119 5 137 4.94e-17 75.9
MS.gene87088.t1 AT2G45660 33.083 133 64 2 12 119 5 137 1.64e-16 75.9
MS.gene87088.t1 AT4G22950 45.946 74 40 0 12 85 5 78 1.92e-16 74.7
MS.gene87088.t1 AT4G18960 38.462 104 52 2 5 108 16 107 2.21e-16 76.3
MS.gene87088.t1 AT2G45650 48.571 70 34 1 7 76 2 69 3.49e-16 75.9
MS.gene87088.t1 AT1G22130 38.710 93 56 1 9 100 2 94 6.03e-16 76.3
MS.gene87088.t1 AT4G22950 45.333 75 41 0 12 86 5 79 1.04e-15 73.9
MS.gene87088.t1 AT4G22950 45.333 75 41 0 12 86 5 79 1.04e-15 73.9
MS.gene87088.t1 AT1G77980 40.000 90 53 1 9 97 2 91 2.11e-15 74.7
MS.gene87088.t1 AT5G51870 50.769 65 32 0 12 76 5 69 2.19e-15 72.0
MS.gene87088.t1 AT5G51870 50.769 65 32 0 12 76 5 69 2.42e-15 72.4
MS.gene87088.t1 AT3G58780 38.318 107 54 2 2 108 12 106 2.69e-15 73.2
MS.gene87088.t1 AT3G58780 38.318 107 54 2 2 108 18 112 2.97e-15 73.2
MS.gene87088.t1 AT5G51870 50.769 65 32 0 12 76 5 69 3.17e-15 72.4
MS.gene87088.t1 AT1G29962 29.348 184 111 6 5 177 4 179 3.38e-15 71.6
MS.gene87088.t1 AT2G42830 37.383 107 55 2 2 108 12 106 3.44e-15 72.8
MS.gene87088.t1 AT2G42830 37.383 107 55 2 2 108 12 106 3.57e-15 72.8
MS.gene87088.t1 AT5G51870 50.769 65 32 0 12 76 15 79 3.83e-15 72.4
MS.gene87088.t1 AT3G58780 38.318 107 54 2 2 108 12 106 4.57e-15 73.2
MS.gene87088.t1 AT5G51870 50.769 65 32 0 12 76 28 92 5.00e-15 71.6
MS.gene87088.t1 AT3G54340 35.714 126 65 5 7 125 2 118 5.31e-15 72.0
MS.gene87088.t1 AT3G57230 42.857 70 38 1 7 76 2 69 5.66e-15 70.1
MS.gene87088.t1 AT4G24540 46.970 66 35 0 11 76 4 69 9.84e-15 71.2
MS.gene87088.t1 AT2G22540 46.970 66 35 0 11 76 4 69 1.01e-14 71.6
MS.gene87088.t1 AT2G22540 46.970 66 35 0 11 76 4 69 1.01e-14 71.6
MS.gene87088.t1 AT5G13790 48.571 70 34 1 7 76 2 69 1.04e-14 72.0
MS.gene87088.t1 AT5G13790 48.571 70 34 1 7 76 2 69 1.21e-14 71.6
MS.gene87088.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.46e-14 71.2
MS.gene87088.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.46e-14 71.2
MS.gene87088.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.46e-14 71.2
MS.gene87088.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.46e-14 71.2
MS.gene87088.t1 AT4G37940 44.286 70 37 1 7 76 2 69 2.23e-14 70.5
MS.gene87088.t1 AT4G37940 44.286 70 37 1 7 76 2 69 2.26e-14 69.3
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 2.41e-14 67.4
MS.gene87088.t1 AT4G37940 44.286 70 37 1 7 76 2 69 2.57e-14 70.1
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 3.18e-14 68.6
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 3.18e-14 68.6
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 3.18e-14 68.6
MS.gene87088.t1 AT3G57390 45.714 70 36 1 7 76 2 69 3.64e-14 69.7
MS.gene87088.t1 AT1G28450 29.609 179 106 6 5 168 4 177 3.71e-14 68.9
MS.gene87088.t1 AT3G57230 42.857 70 38 1 7 76 2 69 4.72e-14 69.7
MS.gene87088.t1 AT3G57230 42.857 70 38 1 7 76 2 69 4.72e-14 69.7
MS.gene87088.t1 AT5G51860 47.692 65 34 0 12 76 5 69 4.85e-14 68.9
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 5.88e-14 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 5.88e-14 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 5.88e-14 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 5.88e-14 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 5.88e-14 67.8
MS.gene87088.t1 AT5G51860 47.692 65 34 0 12 76 5 69 6.15e-14 68.9
MS.gene87088.t1 AT5G10140 46.377 69 36 1 9 76 2 70 6.93e-14 67.8
MS.gene87088.t1 AT1G17310 33.929 168 70 4 8 170 47 178 7.54e-14 68.6
MS.gene87088.t1 AT3G57390 45.714 70 36 1 7 76 2 69 7.85e-14 69.3
MS.gene87088.t1 AT1G17310 33.929 168 70 4 8 170 58 189 9.69e-14 68.6
MS.gene87088.t1 AT5G10140 46.377 69 36 1 9 76 2 70 1.01e-13 67.8
MS.gene87088.t1 AT5G10140 46.377 69 36 1 9 76 2 70 1.05e-13 67.8
MS.gene87088.t1 AT5G10140 46.377 69 36 1 9 76 2 70 1.26e-13 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 1.41e-13 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 1.41e-13 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 1.41e-13 67.8
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 1.44e-13 67.4
MS.gene87088.t1 AT5G62165 44.615 65 36 0 12 76 5 69 1.44e-13 67.4
MS.gene87088.t1 AT3G61120 45.714 70 36 1 7 76 2 69 1.88e-13 68.2
MS.gene87088.t1 AT3G30260 42.254 71 38 2 7 76 2 70 2.38e-13 67.8
MS.gene87088.t1 AT2G22630 42.857 70 38 1 7 76 2 69 2.48e-13 67.4
MS.gene87088.t1 AT2G22630 42.857 70 38 1 7 76 2 69 2.48e-13 67.4
MS.gene87088.t1 AT1G69120 43.662 71 37 2 7 76 2 70 2.64e-13 67.4
MS.gene87088.t1 AT2G22540 53.704 54 25 0 11 64 4 57 3.20e-13 67.4
MS.gene87088.t1 AT5G60910 43.662 71 37 2 7 76 2 70 3.39e-13 67.4
MS.gene87088.t1 AT1G26310 43.662 71 37 2 7 76 2 70 3.51e-13 67.4
MS.gene87088.t1 AT5G20240 45.455 77 36 3 7 79 2 76 4.19e-13 66.6
MS.gene87088.t1 AT5G20240 45.455 77 36 3 7 79 2 76 4.21e-13 65.1
MS.gene87088.t1 AT3G58780 49.231 65 31 1 2 66 12 74 4.34e-13 67.0
MS.gene87088.t1 AT1G47760 36.634 101 50 2 9 109 2 88 5.18e-13 65.9
MS.gene87088.t1 AT4G11880 44.286 70 38 1 12 80 5 74 5.57e-13 65.5
MS.gene87088.t1 AT4G11880 44.286 70 38 1 12 80 5 74 5.57e-13 65.5
MS.gene87088.t1 AT1G69120 43.662 71 37 2 7 76 2 70 5.81e-13 67.0
MS.gene87088.t1 AT3G58780 49.231 65 31 1 2 66 12 74 6.43e-13 67.0
MS.gene87088.t1 AT4G11880 44.286 70 38 1 12 80 5 74 8.63e-13 65.9
MS.gene87088.t1 AT4G11880 44.286 70 38 1 12 80 5 74 8.63e-13 65.9
MS.gene87088.t1 AT5G15800 45.070 71 36 2 7 76 2 70 9.02e-13 66.2
MS.gene87088.t1 AT2G14210 42.254 71 38 2 7 76 2 70 9.09e-13 65.9
MS.gene87088.t1 AT2G14210 42.254 71 38 2 7 76 2 70 1.15e-12 65.9
MS.gene87088.t1 AT5G15800 45.070 71 36 2 7 76 2 70 1.33e-12 65.9
MS.gene87088.t1 AT5G23260 47.945 73 34 2 7 77 18 88 1.33e-12 65.9
MS.gene87088.t1 AT5G23260 47.945 73 34 2 7 77 18 88 1.41e-12 65.9
MS.gene87088.t1 AT5G23260 47.945 73 34 2 7 77 2 72 1.42e-12 65.9
MS.gene87088.t1 AT5G23260 47.945 73 34 2 7 77 2 72 1.54e-12 65.5
MS.gene87088.t1 AT2G03710 50.000 58 27 1 7 64 2 57 2.27e-12 63.9
MS.gene87088.t1 AT5G65050 43.478 69 38 1 9 76 2 70 2.86e-12 63.5
MS.gene87088.t1 AT5G65050 43.478 69 38 1 9 76 2 70 3.22e-12 63.5
MS.gene87088.t1 AT5G65050 43.478 69 38 1 9 76 2 70 4.13e-12 63.5
MS.gene87088.t1 AT5G65050 43.478 69 38 1 9 76 2 70 4.54e-12 63.2
MS.gene87088.t1 AT1G24260 50.000 58 27 1 7 64 2 57 4.56e-12 63.9
MS.gene87088.t1 AT3G02310 43.662 71 37 2 7 76 2 70 4.62e-12 63.5
MS.gene87088.t1 AT1G24260 50.000 58 27 1 7 64 2 57 4.87e-12 64.3
MS.gene87088.t1 AT1G24260 50.000 58 27 1 7 64 2 57 5.06e-12 63.9
MS.gene87088.t1 AT5G65060 43.478 69 38 1 9 76 2 70 5.72e-12 62.8
MS.gene87088.t1 AT2G03710 50.000 58 27 1 7 64 2 57 5.87e-12 63.9
MS.gene87088.t1 AT2G03710 50.000 58 27 1 7 64 2 57 5.99e-12 63.9
MS.gene87088.t1 AT5G49420 35.106 94 54 2 5 91 3 96 6.55e-12 64.7
MS.gene87088.t1 AT5G65060 43.478 69 38 1 9 76 2 70 7.63e-12 62.8
MS.gene87088.t1 AT5G65060 43.478 69 38 1 9 76 2 70 8.17e-12 62.8
MS.gene87088.t1 AT3G02310 50.000 58 27 1 7 64 2 57 1.10e-11 63.2
MS.gene87088.t1 AT1G71692 41.791 67 38 1 12 77 5 71 1.61e-11 62.0
MS.gene87088.t1 AT5G65070 41.667 60 35 0 9 68 2 61 4.13e-11 59.7
MS.gene87088.t1 AT1G18750 26.178 191 123 8 9 184 2 189 5.95e-11 62.0
MS.gene87088.t1 AT5G65070 29.252 147 97 4 9 152 2 144 6.50e-11 60.1
MS.gene87088.t1 AT1G18750 34.091 88 55 2 9 93 2 89 7.01e-11 61.6
MS.gene87088.t1 AT1G18750 26.289 194 125 8 9 187 2 192 7.05e-11 61.6
MS.gene87088.t1 AT5G49490 34.831 89 51 2 5 86 41 129 8.99e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATTCAAGAAGATTT+TGG 0.235888 7.4:-31536522 MS.gene87088:CDS
GCATTGAGCTCACGCACTTT+GGG 0.253420 7.4:+31536677 None:intergenic
ATCTCAGTTTGTTGAGGATT+TGG 0.255732 7.4:+31536377 None:intergenic
ATGTTGCAACCTCATTTAAT+TGG 0.256996 7.4:-31536326 MS.gene87088:CDS
TGTTGATAGGAGTGCAATTC+AGG 0.259070 7.4:-31536471 MS.gene87088:CDS
TTTAATTGGCTTCAACAATA+TGG 0.267629 7.4:-31536312 MS.gene87088:CDS
AAATCATTACCAAGAGAAAA+TGG 0.314064 7.4:+31536428 None:intergenic
AATATGGAAGGAGGAGGATA+TGG 0.330377 7.4:-31536296 MS.gene87088:CDS
AGGCGTTCAAGGCTCAATTT+TGG 0.334747 7.4:-31536583 MS.gene87088:CDS
GCCCTATTCATTCTATCAAT+TGG 0.337270 7.4:+31536551 None:intergenic
CTAGAAACTTCAATAGAATC+TGG 0.354578 7.4:+31536268 None:intergenic
CCTTGAACGCCTTGCACAAA+AGG 0.373825 7.4:+31536594 None:intergenic
GTCATAGATCACTATCTCTC+TGG 0.381436 7.4:-31536752 MS.gene87088:CDS
GTTGAGGATTTGGCTGATAA+TGG 0.382243 7.4:+31536387 None:intergenic
TCCAATTGATAGAATGAATA+GGG 0.395255 7.4:-31536552 MS.gene87088:CDS
AATGAGCTTTGCACCCTTTG+TGG 0.404337 7.4:-31536848 MS.gene87088:CDS
TTGTTGCTCAACATGTTGAT+AGG 0.407276 7.4:-31536484 MS.gene87088:CDS
AGCATTGAGCTCACGCACTT+TGG 0.416380 7.4:+31536676 None:intergenic
ATTAAATGAGGTTGCAACAT+AGG 0.428043 7.4:+31536329 None:intergenic
GTCCAATTGATAGAATGAAT+AGG 0.444780 7.4:-31536553 MS.gene87088:CDS
ATAATGGAGAGGGATGTTAG+AGG 0.448969 7.4:+31536403 None:intergenic
TCTATGACCGTATCAACATT+TGG 0.464142 7.4:+31536767 None:intergenic
TAGAAACTTCAATAGAATCT+GGG 0.468500 7.4:+31536269 None:intergenic
GCTCACGCACTTTGGGGCTA+CGG 0.489459 7.4:+31536684 None:intergenic
TTAAATGAGGTTGCAACATA+GGG 0.500698 7.4:+31536330 None:intergenic
AGCAACATCTACACCACAAA+GGG 0.507315 7.4:+31536835 None:intergenic
CGGTCATCCAAATGTTGATA+CGG 0.514501 7.4:-31536774 MS.gene87088:CDS
TGTATTCTCACCTAGTGAAA+AGG 0.518205 7.4:-31536807 MS.gene87088:CDS
ACCTTTCCTTCCGCTCGACA+TGG 0.533133 7.4:+31536967 None:intergenic
GTTGATAGGAGTGCAATTCA+GGG 0.537321 7.4:-31536470 MS.gene87088:CDS
ATTGGCTTCAACAATATGGA+AGG 0.538957 7.4:-31536308 MS.gene87088:CDS
ACCATGTCGAGCGGAAGGAA+AGG 0.542544 7.4:-31536968 MS.gene87088:CDS
GCTTTGAGAAAGTCACTTGG+AGG 0.544594 7.4:+31536897 None:intergenic
CATTGAGCTCACGCACTTTG+GGG 0.547715 7.4:+31536678 None:intergenic
TTGTTGAAGCCAATTAAATG+AGG 0.551491 7.4:+31536317 None:intergenic
TCATAGATCACTATCTCTCT+GGG 0.565362 7.4:-31536751 MS.gene87088:CDS
CTTCAACCATGTCGAGCGGA+AGG 0.578339 7.4:-31536973 None:intergenic
CTTTCTCAAAGCGTCGTAGT+GGG 0.584950 7.4:-31536886 MS.gene87088:CDS
AATCAACAACACACTGGACG+AGG 0.587728 7.4:-31536642 MS.gene87088:CDS
AGAAACTTCAATAGAATCTG+GGG 0.597200 7.4:+31536270 None:intergenic
TTCAACAATATGGAAGGAGG+AGG 0.598809 7.4:-31536302 MS.gene87088:CDS
ACTTTCTCAAAGCGTCGTAG+TGG 0.602122 7.4:-31536887 MS.gene87088:CDS
GTGAGCCTCAATGAATTCCA+TGG 0.607397 7.4:+31536706 None:intergenic
GACGCTTTGAGAAAGTCACT+TGG 0.608413 7.4:+31536894 None:intergenic
GAAACTTCAATAGAATCTGG+GGG 0.630503 7.4:+31536271 None:intergenic
GGATTTGGCTGATAATGGAG+AGG 0.633381 7.4:+31536392 None:intergenic
TCGAGCGGAAGGAAAGGTCG+TGG 0.637409 7.4:-31536962 MS.gene87088:CDS
GGCTTCAACAATATGGAAGG+AGG 0.642874 7.4:-31536305 MS.gene87088:CDS
GTTTCAAATCAACAACACAC+TGG 0.650841 7.4:-31536648 MS.gene87088:CDS
TAGCACCATGGAATTCATTG+AGG 0.666363 7.4:-31536711 MS.gene87088:CDS
GAGCAACATCTACACCACAA+AGG 0.666690 7.4:+31536834 None:intergenic
GATTTGGCTGATAATGGAGA+GGG 0.685158 7.4:+31536393 None:intergenic
TGTACTTCAACCATGTCGAG+CGG 0.700229 7.4:-31536977 None:intergenic
ACCGCAAAACAATAGCACCA+TGG 0.712731 7.4:-31536723 MS.gene87088:CDS
AAACTTCAATAGAATCTGGG+GGG 0.725890 7.4:+31536272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTATTCAAGAAGATTT+TGG - chr7.4:31536720-31536739 MS.gene87088:CDS 20.0%
! AAATCATTACCAAGAGAAAA+TGG + chr7.4:31536817-31536836 None:intergenic 25.0%
! TCCAATTGATAGAATGAATA+GGG - chr7.4:31536690-31536709 MS.gene87088:CDS 25.0%
!! AAAGAAAATACCTTTTCACT+AGG + chr7.4:31536448-31536467 None:intergenic 25.0%
!! ATTATTCAAGAAGATTTTGG+TGG - chr7.4:31536723-31536742 MS.gene87088:CDS 25.0%
!! TTTAATTGGCTTCAACAATA+TGG - chr7.4:31536930-31536949 MS.gene87088:CDS 25.0%
!!! AGTGAAAAGGTATTTTCTTT+CGG - chr7.4:31536448-31536467 MS.gene87088:CDS 25.0%
ATAGGGTTGTGAAAAATTTG+TGG + chr7.4:31536898-31536917 None:intergenic 30.0%
ATGTTGCAACCTCATTTAAT+TGG - chr7.4:31536916-31536935 MS.gene87088:CDS 30.0%
ATTAAATGAGGTTGCAACAT+AGG + chr7.4:31536916-31536935 None:intergenic 30.0%
GTCCAATTGATAGAATGAAT+AGG - chr7.4:31536689-31536708 MS.gene87088:CDS 30.0%
TTAAATGAGGTTGCAACATA+GGG + chr7.4:31536915-31536934 None:intergenic 30.0%
TTGTTGAAGCCAATTAAATG+AGG + chr7.4:31536928-31536947 None:intergenic 30.0%
!! AAAAACATCTCAGTTTGTTG+AGG + chr7.4:31536874-31536893 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr7.4:31536309-31536328 None:intergenic 30.0%
GCCCTATTCATTCTATCAAT+TGG + chr7.4:31536694-31536713 None:intergenic 35.0%
GTTTCAAATCAACAACACAC+TGG - chr7.4:31536594-31536613 MS.gene87088:CDS 35.0%
TCATAGATCACTATCTCTCT+GGG - chr7.4:31536491-31536510 MS.gene87088:CDS 35.0%
TCTATGACCGTATCAACATT+TGG + chr7.4:31536478-31536497 None:intergenic 35.0%
TGTATTCTCACCTAGTGAAA+AGG - chr7.4:31536435-31536454 MS.gene87088:CDS 35.0%
TTGTTGCTCAACATGTTGAT+AGG - chr7.4:31536758-31536777 MS.gene87088:CDS 35.0%
! ATTGGCTTCAACAATATGGA+AGG - chr7.4:31536934-31536953 MS.gene87088:CDS 35.0%
! CACACTTTTCCATTTTCTCT+TGG - chr7.4:31536805-31536824 MS.gene87088:CDS 35.0%
!! ATCTCAGTTTGTTGAGGATT+TGG + chr7.4:31536868-31536887 None:intergenic 35.0%
AATATGGAAGGAGGAGGATA+TGG - chr7.4:31536946-31536965 MS.gene87088:CDS 40.0%
AGCAACATCTACACCACAAA+GGG + chr7.4:31536410-31536429 None:intergenic 40.0%
CGGTCATCCAAATGTTGATA+CGG - chr7.4:31536468-31536487 MS.gene87088:CDS 40.0%
GTCATAGATCACTATCTCTC+TGG - chr7.4:31536490-31536509 MS.gene87088:CDS 40.0%
GTTGAGGATTTGGCTGATAA+TGG + chr7.4:31536858-31536877 None:intergenic 40.0%
TAGCACCATGGAATTCATTG+AGG - chr7.4:31536531-31536550 MS.gene87088:CDS 40.0%
TTCAACAATATGGAAGGAGG+AGG - chr7.4:31536940-31536959 MS.gene87088:CDS 40.0%
! ATAATGGAGAGGGATGTTAG+AGG + chr7.4:31536842-31536861 None:intergenic 40.0%
! GTTGATAGGAGTGCAATTCA+GGG - chr7.4:31536772-31536791 MS.gene87088:CDS 40.0%
! TGTTGATAGGAGTGCAATTC+AGG - chr7.4:31536771-31536790 MS.gene87088:CDS 40.0%
!! GATTTGGCTGATAATGGAGA+GGG + chr7.4:31536852-31536871 None:intergenic 40.0%
!! GTTCAAGGCTCAATTTTGGT+GGG - chr7.4:31536663-31536682 MS.gene87088:CDS 40.0%
!!! TCCATGGTGCTATTGTTTTG+CGG + chr7.4:31536523-31536542 None:intergenic 40.0%
AATCAACAACACACTGGACG+AGG - chr7.4:31536600-31536619 MS.gene87088:CDS 45.0%
AATGAGCTTTGCACCCTTTG+TGG - chr7.4:31536394-31536413 MS.gene87088:CDS 45.0%
ACCGCAAAACAATAGCACCA+TGG - chr7.4:31536519-31536538 MS.gene87088:CDS 45.0%
GAGCAACATCTACACCACAA+AGG + chr7.4:31536411-31536430 None:intergenic 45.0%
GGCTTCAACAATATGGAAGG+AGG - chr7.4:31536937-31536956 MS.gene87088:CDS 45.0%
GTGAGCCTCAATGAATTCCA+TGG + chr7.4:31536539-31536558 None:intergenic 45.0%
! AGGCGTTCAAGGCTCAATTT+TGG - chr7.4:31536659-31536678 MS.gene87088:CDS 45.0%
! CGTTCAAGGCTCAATTTTGG+TGG - chr7.4:31536662-31536681 MS.gene87088:CDS 45.0%
!! ACTTTCTCAAAGCGTCGTAG+TGG - chr7.4:31536355-31536374 MS.gene87088:CDS 45.0%
!! CTTTCTCAAAGCGTCGTAGT+GGG - chr7.4:31536356-31536375 MS.gene87088:CDS 45.0%
!! GACGCTTTGAGAAAGTCACT+TGG + chr7.4:31536351-31536370 None:intergenic 45.0%
!! GCTTTGAGAAAGTCACTTGG+AGG + chr7.4:31536348-31536367 None:intergenic 45.0%
!! GGATTTGGCTGATAATGGAG+AGG + chr7.4:31536853-31536872 None:intergenic 45.0%
!! TGAGTTGAGCCTTTTGTGCA+AGG - chr7.4:31536639-31536658 MS.gene87088:CDS 45.0%
!!! ATGGTGCTATTGTTTTGCGG+TGG + chr7.4:31536520-31536539 None:intergenic 45.0%
!!! TGGTGCTATTGTTTTGCGGT+GGG + chr7.4:31536519-31536538 None:intergenic 45.0%
CATTGAGCTCACGCACTTTG+GGG + chr7.4:31536567-31536586 None:intergenic 50.0%
CCTTGAACGCCTTGCACAAA+AGG + chr7.4:31536651-31536670 None:intergenic 50.0%
CTGGACGAGGAGAAAAAGTG+TGG - chr7.4:31536613-31536632 MS.gene87088:CDS 50.0%
GCATTGAGCTCACGCACTTT+GGG + chr7.4:31536568-31536587 None:intergenic 50.0%
! AGCATTGAGCTCACGCACTT+TGG + chr7.4:31536569-31536588 None:intergenic 50.0%
!! CCTTTTGTGCAAGGCGTTCA+AGG - chr7.4:31536648-31536667 MS.gene87088:CDS 50.0%
TCGAGCGGAAGGAAAGGTCG+TGG - chr7.4:31536280-31536299 MS.gene87088:CDS 60.0%
!! GCTCACGCACTTTGGGGCTA+CGG + chr7.4:31536561-31536580 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 31536277 31536987 31536277 ID=MS.gene87088
chr7.4 mRNA 31536277 31536987 31536277 ID=MS.gene87088.t1;Parent=MS.gene87088
chr7.4 exon 31536277 31536987 31536277 ID=MS.gene87088.t1.exon1;Parent=MS.gene87088.t1
chr7.4 CDS 31536277 31536987 31536277 ID=cds.MS.gene87088.t1;Parent=MS.gene87088.t1
Gene Sequence

>MS.gene87088

ATGTCGAGCGGAAGGAAAGGTCGTGGTAGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTCCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAGAAAGTCAATGAGCTTTGCACCCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTCGGTCATCCAAATGTTGATACGGTCATAGATCACTATCTCTCTGGGATCCCACCGCAAAACAATAGCACCATGGAATTCATTGAGGCTCACCGTAGCCCCAAAGTGCGTGAGCTCAATGCTGAGTTGTTTCAAATCAACAACACACTGGACGAGGAGAAAAAGTGTGGTGATGAGTTGAGCCTTTTGTGCAAGGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTGATAGAATGAATAGGGCTCAGCTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCAACATGTTGATAGGAGTGCAATTCAGGGTGCTTCTGCTCACACTTTTCCATTTTCTCTTGGTAATGATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTTTGCCACAAATTTTTCACAACCCTATGTTGCAACCTCATTTAATTGGCTTCAACAATATGGAAGGAGGAGGATATGGACCCCCCAGATTCTATTGA
Protein sequence

>MS.gene87088.t1

MSSGRKGRGSQKIEMKKMSNESNLQVTFSKRRSGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDHYLSGIPPQNNSTMEFIEAHRSPKVRELNAELFQINNTLDEEKKCGDELSLLCKAFKAQFWWACPIDRMNRAQLELFKKILVELKKLVAQHVDRSAIQGASAHTFPFSLGNDLSSNIPLHYQPNPQQTEMFLPQIFHNPMLQPHLIGFNNMEGGGYGPPRFY