Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87320.t1 | XP_003629590.2 | 92.5 | 252 | 19 | 0 | 1 | 252 | 1 | 252 | 3.40E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87320.t1 | Q2KIJ5 | 28.2 | 188 | 119 | 4 | 9 | 188 | 32 | 211 | 9.0e-11 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87320.t1 | A0A396GMH5 | 92.5 | 252 | 19 | 0 | 1 | 252 | 1 | 252 | 2.4e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene87320 | 0.801695 | 7.97E-49 | -1.69E-46 |
| MS.gene049907 | MS.gene87320 | 0.809225 | 2.10E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene87320 | 0.814799 | 1.28E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene87320 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene059680 | MS.gene87320 | 0.829994 | 3.77E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene87320 | 0.806624 | 7.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87320.t1 | MTR_8g079810 | 98.394 | 249 | 4 | 0 | 4 | 252 | 1 | 249 | 0.0 | 506 |
| MS.gene87320.t1 | MTR_2g022600 | 25.967 | 181 | 123 | 3 | 14 | 191 | 40 | 212 | 2.07e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87320.t1 | AT3G50560 | 67.910 | 268 | 69 | 3 | 1 | 251 | 2 | 269 | 3.81e-125 | 356 |
Find 68 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGCTCTGCTTCTTTAAA+TGG | 0.216932 | 8.3:+24558629 | MS.gene87320:CDS |
| CAAGGGAAGTTTGGAAAGTT+TGG | 0.239457 | 8.3:-24558390 | None:intergenic |
| GCTTCTTTAAATGGCATTGC+AGG | 0.309696 | 8.3:+24558638 | MS.gene87320:CDS |
| TCCCTTGCCGTTTCATCCCT+CGG | 0.333713 | 8.3:+24558406 | MS.gene87320:CDS |
| ATGAACGAACATCCATTTCT+TGG | 0.333809 | 8.3:-24559721 | None:intergenic |
| ATTAGGACCGACGCCAACTA+TGG | 0.357925 | 8.3:-24557865 | None:intergenic |
| ATGAAACGGCAAGGGAAGTT+TGG | 0.367798 | 8.3:-24558399 | None:intergenic |
| TTTCCTCTTTCAACCATTCC+CGG | 0.371758 | 8.3:-24558587 | None:intergenic |
| TTTCTTGGGTCCATGCATTC+CGG | 0.377690 | 8.3:-24559706 | None:intergenic |
| TGCCTTCAACTGTGCTCAAC+AGG | 0.396784 | 8.3:+24558429 | MS.gene87320:CDS |
| ATGCATTGGCTCAAACATAT+TGG | 0.404371 | 8.3:+24559666 | MS.gene87320:CDS |
| ATGTTGAAAAGGAGTTGGTT+TGG | 0.421399 | 8.3:-24558359 | None:intergenic |
| TATGTTTGAGCCAATGCATC+CGG | 0.433151 | 8.3:-24559662 | None:intergenic |
| TGGATTGAGAGATGTTGAAA+AGG | 0.438146 | 8.3:-24558370 | None:intergenic |
| AGTGTAAAAGAAGCATTTGA+AGG | 0.449118 | 8.3:+24558271 | MS.gene87320:CDS |
| GCCATCCTCGCCCGTGACTT+AGG | 0.454853 | 8.3:+24557936 | MS.gene87320:CDS |
| TGAACGAACATCCATTTCTT+GGG | 0.457910 | 8.3:-24559720 | None:intergenic |
| GGTAATATTGCAGCCATAGT+TGG | 0.459882 | 8.3:+24557852 | MS.gene87320:CDS |
| GAATGCATGGACCCAAGAAA+TGG | 0.461502 | 8.3:+24559709 | MS.gene87320:CDS |
| AAAGGAACAATTCTATTCAC+TGG | 0.475162 | 8.3:+24558608 | MS.gene87320:CDS |
| TCGTCGCGTGGAGGAGGAAG+TGG | 0.477711 | 8.3:+24559620 | MS.gene87320:CDS |
| TGAAATAGCAAGGGAAGAAA+AGG | 0.479373 | 8.3:+24558207 | MS.gene87320:CDS |
| TACCTGTTGAGCACAGTTGA+AGG | 0.480690 | 8.3:-24558431 | None:intergenic |
| GCTCGCAAGTTTGCTCATGA+AGG | 0.481049 | 8.3:+24557903 | MS.gene87320:CDS |
| GCGATGGAGAGGCCGAGATT+AGG | 0.485603 | 8.3:-24557882 | None:intergenic |
| GAGAGATGTTGAAAAGGAGT+TGG | 0.485715 | 8.3:-24558364 | None:intergenic |
| AAGTGGTGGTGAGAGTGTTA+TGG | 0.486623 | 8.3:+24559637 | MS.gene87320:CDS |
| ATTTATGAATTAGGTGCTGC+CGG | 0.492617 | 8.3:+24558568 | MS.gene87320:intron |
| ACCTAAGTCACGGGCGAGGA+TGG | 0.502538 | 8.3:-24557937 | None:intergenic |
| TTTGAAGGTGTACTTTCACT+TGG | 0.508660 | 8.3:+24558286 | MS.gene87320:CDS |
| TGTTATGGACCCGGATGCAT+TGG | 0.516123 | 8.3:+24559652 | MS.gene87320:CDS |
| GTAGCTCATATTATTATCGA+TGG | 0.524070 | 8.3:+24558856 | MS.gene87320:CDS |
| CAAACGAAACGCACCTTGGT+GGG | 0.529770 | 8.3:-24558888 | None:intergenic |
| ACAAACGAAACGCACCTTGG+TGG | 0.530352 | 8.3:-24558889 | None:intergenic |
| ATGACGTCGTCGCGTGGAGG+AGG | 0.530537 | 8.3:+24559614 | MS.gene87320:CDS |
| ATGAGCAAACTTGCGAGCGA+TGG | 0.536721 | 8.3:-24557898 | None:intergenic |
| GGCATATACACGTTCAAGAC+CGG | 0.538407 | 8.3:+24559687 | MS.gene87320:CDS |
| TACATTCATACCTAAGTCAC+GGG | 0.542393 | 8.3:-24557946 | None:intergenic |
| GAATTAGGTGCTGCCGGGAA+TGG | 0.547598 | 8.3:+24558574 | MS.gene87320:intron |
| GGAATGGTTGAAAGAGGAAA+AGG | 0.550184 | 8.3:+24558590 | MS.gene87320:CDS |
| GAAGGCACCGAGGGATGAAA+CGG | 0.554656 | 8.3:-24558413 | None:intergenic |
| GCTAGAGAATTTCAGCCTCA+AGG | 0.567416 | 8.3:+24558826 | MS.gene87320:CDS |
| ACGTTCAAGACCGGAATGCA+TGG | 0.567516 | 8.3:+24559696 | MS.gene87320:CDS |
| TTTATGAATTAGGTGCTGCC+GGG | 0.568009 | 8.3:+24558569 | MS.gene87320:intron |
| GGAGTTGGTTTGGATTGAAG+AGG | 0.572556 | 8.3:-24558349 | None:intergenic |
| TATGGGGTGCAGAGGATCAT+CGG | 0.575217 | 8.3:+24559586 | MS.gene87320:intron |
| GTTGGCGTCGGTCCTAATCT+CGG | 0.576317 | 8.3:+24557870 | MS.gene87320:CDS |
| ACCGAGGGATGAAACGGCAA+GGG | 0.577987 | 8.3:-24558407 | None:intergenic |
| GCAACAATGACGTCGTCGCG+TGG | 0.583990 | 8.3:+24559608 | MS.gene87320:CDS |
| CACCGAGGGATGAAACGGCA+AGG | 0.591062 | 8.3:-24558408 | None:intergenic |
| ATGTTTGAGCCAATGCATCC+GGG | 0.591141 | 8.3:-24559661 | None:intergenic |
| CAAACTTGCGAGCGATGGAG+AGG | 0.595122 | 8.3:-24557893 | None:intergenic |
| ATACATTCATACCTAAGTCA+CGG | 0.596054 | 8.3:-24557947 | None:intergenic |
| CTGCCGGGAATGGTTGAAAG+AGG | 0.597430 | 8.3:+24558584 | MS.gene87320:CDS |
| GTCACGGGCGAGGATGGCAA+CGG | 0.598987 | 8.3:-24557931 | None:intergenic |
| TCGCGTGGAGGAGGAAGTGG+TGG | 0.606812 | 8.3:+24559623 | MS.gene87320:CDS |
| AGCACAGTTGAAGGCACCGA+GGG | 0.609788 | 8.3:-24558422 | None:intergenic |
| AGAAACATGGCAAGCTCACG+AGG | 0.620180 | 8.3:+24557831 | MS.gene87320:CDS |
| TGGTGAGAGTGTTATGGACC+CGG | 0.622308 | 8.3:+24559643 | MS.gene87320:CDS |
| GATTTGCAGATGAAATAGCA+AGG | 0.631251 | 8.3:+24558197 | MS.gene87320:CDS |
| ATTTGCAGATGAAATAGCAA+GGG | 0.637104 | 8.3:+24558198 | MS.gene87320:CDS |
| TCATACCTAAGTCACGGGCG+AGG | 0.643162 | 8.3:-24557941 | None:intergenic |
| TGAGCTACATGCACTCCTTG+AGG | 0.648657 | 8.3:-24558841 | None:intergenic |
| ATTGCAGCCATAGTTGGCGT+CGG | 0.656355 | 8.3:+24557858 | MS.gene87320:CDS |
| ACAATGACGTCGTCGCGTGG+AGG | 0.660348 | 8.3:+24559611 | MS.gene87320:CDS |
| GAGGTGCACGATGAGAAACA+TGG | 0.687039 | 8.3:+24557818 | None:intergenic |
| GTGTGCATGAGACAGGCTGT+GGG | 0.704247 | 8.3:+24558770 | MS.gene87320:intron |
| GAGCACAGTTGAAGGCACCG+AGG | 0.729192 | 8.3:-24558423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAA+TGG | - | chr8.3:24559009-24559028 | None:intergenic | 0.0% |
| !! | TGAATAATGATTTATGAATT+AGG | + | chr8.3:24558559-24558578 | MS.gene87320:intron | 15.0% |
| !! | ACATAGATGTATATTAGTTA+TGG | - | chr8.3:24559103-24559122 | None:intergenic | 20.0% |
| !! | TTATGTTTGATTGAATTGAA+GGG | + | chr8.3:24558115-24558134 | MS.gene87320:intron | 20.0% |
| !! | TTTATGTTTGATTGAATTGA+AGG | + | chr8.3:24558114-24558133 | MS.gene87320:intron | 20.0% |
| !!! | ATTATTATCGATGGTTTTAT+TGG | + | chr8.3:24558865-24558884 | MS.gene87320:CDS | 20.0% |
| !!! | TAAATGACTTGTTATGTTAT+GGG | + | chr8.3:24559569-24559588 | MS.gene87320:intron | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | + | chr8.3:24559200-24559219 | MS.gene87320:intron | 20.0% |
| !!! | TTCATCTATAACATACTTTT+TGG | + | chr8.3:24557986-24558005 | MS.gene87320:intron | 20.0% |
| ! | ATTATAAATTGAACTGATGC+AGG | + | chr8.3:24558163-24558182 | MS.gene87320:intron | 25.0% |
| ! | TAACAAGTCATTTACACAAT+AGG | - | chr8.3:24559563-24559582 | None:intergenic | 25.0% |
| ! | TAGATGTATATTAGTTATGG+TGG | - | chr8.3:24559100-24559119 | None:intergenic | 25.0% |
| ! | TTATAAATTGAACTGATGCA+GGG | + | chr8.3:24558164-24558183 | MS.gene87320:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr8.3:24559175-24559194 | None:intergenic | 25.0% |
| !! | AGATAAAACGTTCAATTTTC+AGG | + | chr8.3:24559375-24559394 | MS.gene87320:intron | 25.0% |
| !! | TCTATCCCAAATTTCTAAAA+TGG | + | chr8.3:24559430-24559449 | MS.gene87320:intron | 25.0% |
| !!! | AAATGACTTGTTATGTTATG+GGG | + | chr8.3:24559570-24559589 | MS.gene87320:intron | 25.0% |
| !!! | CCAAATTTCTAAAATGGTAT+CGG | + | chr8.3:24559436-24559455 | MS.gene87320:intron | 25.0% |
| !!! | CGATACCATTTTAGAAATTT+GGG | - | chr8.3:24559438-24559457 | None:intergenic | 25.0% |
| !!! | GTAAATGACTTGTTATGTTA+TGG | + | chr8.3:24559568-24559587 | MS.gene87320:intron | 25.0% |
| AAAGGAACAATTCTATTCAC+TGG | + | chr8.3:24558608-24558627 | MS.gene87320:CDS | 30.0% | |
| AGATCTATGAAGCACAAATA+CGG | - | chr8.3:24559272-24559291 | None:intergenic | 30.0% | |
| ATACATTCATACCTAAGTCA+CGG | - | chr8.3:24557950-24557969 | None:intergenic | 30.0% | |
| ATATTGTCAAGAGTTCTACA+TGG | + | chr8.3:24559348-24559367 | MS.gene87320:intron | 30.0% | |
| ATGAATGAGAGGAAAAGAAA+AGG | - | chr8.3:24558943-24558962 | None:intergenic | 30.0% | |
| ATTTGCAGATGAAATAGCAA+GGG | + | chr8.3:24558198-24558217 | MS.gene87320:CDS | 30.0% | |
| CTACATACACACAAGATTTA+AGG | + | chr8.3:24559290-24559309 | MS.gene87320:intron | 30.0% | |
| GACAGAAACATTTGATATGT+TGG | - | chr8.3:24558477-24558496 | None:intergenic | 30.0% | |
| GGAATGAAATATATGCAAGT+AGG | - | chr8.3:24558988-24559007 | None:intergenic | 30.0% | |
| GTAGCTCATATTATTATCGA+TGG | + | chr8.3:24558856-24558875 | MS.gene87320:CDS | 30.0% | |
| TCCTCTCATTCATATTCATT+GGG | + | chr8.3:24558950-24558969 | MS.gene87320:intron | 30.0% | |
| TGAATGAGAGGAAAAGAAAA+GGG | - | chr8.3:24558942-24558961 | None:intergenic | 30.0% | |
| TTCCTCTCATTCATATTCAT+TGG | + | chr8.3:24558949-24558968 | MS.gene87320:intron | 30.0% | |
| ! | AGTTATGGTGGAATTAGAAT+AGG | - | chr8.3:24559088-24559107 | None:intergenic | 30.0% |
| ! | TTTACATGTAGGTTTTGCAA+GGG | + | chr8.3:24559522-24559541 | MS.gene87320:intron | 30.0% |
| ! | TTTTACATGTAGGTTTTGCA+AGG | + | chr8.3:24559521-24559540 | MS.gene87320:intron | 30.0% |
| !! | AGTGTAAAAGAAGCATTTGA+AGG | + | chr8.3:24558271-24558290 | MS.gene87320:CDS | 30.0% |
| !! | CCGATACCATTTTAGAAATT+TGG | - | chr8.3:24559439-24559458 | None:intergenic | 30.0% |
| ACATCTATGTAGACATTCCT+CGG | + | chr8.3:24559113-24559132 | MS.gene87320:intron | 35.0% | |
| AGAAAAGGGAAAGAAGATCT+AGG | - | chr8.3:24558928-24558947 | None:intergenic | 35.0% | |
| ATGAACGAACATCCATTTCT+TGG | - | chr8.3:24559724-24559743 | None:intergenic | 35.0% | |
| ATGAAGCACAAATACGGATT+TGG | - | chr8.3:24559266-24559285 | None:intergenic | 35.0% | |
| GATTTGCAGATGAAATAGCA+AGG | + | chr8.3:24558197-24558216 | MS.gene87320:CDS | 35.0% | |
| TACATTCATACCTAAGTCAC+GGG | - | chr8.3:24557949-24557968 | None:intergenic | 35.0% | |
| TCCCAATGAATATGAATGAG+AGG | - | chr8.3:24558954-24558973 | None:intergenic | 35.0% | |
| TCTTAAATTATCAGCGGTGT+CGG | + | chr8.3:24559206-24559225 | MS.gene87320:intron | 35.0% | |
| TGAAATAGCAAGGGAAGAAA+AGG | + | chr8.3:24558207-24558226 | MS.gene87320:CDS | 35.0% | |
| TGAACGAACATCCATTTCTT+GGG | - | chr8.3:24559723-24559742 | None:intergenic | 35.0% | |
| TGGATTGAGAGATGTTGAAA+AGG | - | chr8.3:24558373-24558392 | None:intergenic | 35.0% | |
| ! | ATGTTGAAAAGGAGTTGGTT+TGG | - | chr8.3:24558362-24558381 | None:intergenic | 35.0% |
| ! | ATTTATGAATTAGGTGCTGC+CGG | + | chr8.3:24558568-24558587 | MS.gene87320:intron | 35.0% |
| ! | GCAGTCATCATTTTACATGT+AGG | + | chr8.3:24559511-24559530 | MS.gene87320:intron | 35.0% |
| ! | TTTGAAGGTGTACTTTCACT+TGG | + | chr8.3:24558286-24558305 | MS.gene87320:CDS | 35.0% |
| !! | ATGCATTGGCTCAAACATAT+TGG | + | chr8.3:24559666-24559685 | MS.gene87320:CDS | 35.0% |
| AGAGAACATTGCATTGCATG+TGG | + | chr8.3:24558746-24558765 | MS.gene87320:intron | 40.0% | |
| CAAGGGAAGTTTGGAAAGTT+TGG | - | chr8.3:24558393-24558412 | None:intergenic | 40.0% | |
| CACAAATACGGATTTGGACA+CGG | - | chr8.3:24559260-24559279 | None:intergenic | 40.0% | |
| GAGAGATGTTGAAAAGGAGT+TGG | - | chr8.3:24558367-24558386 | None:intergenic | 40.0% | |
| GATTAGACGTGTCTTGATGT+CGG | + | chr8.3:24559135-24559154 | MS.gene87320:intron | 40.0% | |
| GCTTCTTTAAATGGCATTGC+AGG | + | chr8.3:24558638-24558657 | MS.gene87320:CDS | 40.0% | |
| GGAATGGTTGAAAGAGGAAA+AGG | + | chr8.3:24558590-24558609 | MS.gene87320:CDS | 40.0% | |
| GGTAATATTGCAGCCATAGT+TGG | + | chr8.3:24557852-24557871 | MS.gene87320:CDS | 40.0% | |
| GGTTGCTCTGCTTCTTTAAA+TGG | + | chr8.3:24558629-24558648 | MS.gene87320:CDS | 40.0% | |
| TAAACAAACGAAACGCACCT+TGG | - | chr8.3:24558895-24558914 | None:intergenic | 40.0% | |
| TAAATTGAACTGATGCAGGG+AGG | + | chr8.3:24558167-24558186 | MS.gene87320:intron | 40.0% | |
| TATGTTTGAGCCAATGCATC+CGG | - | chr8.3:24559665-24559684 | None:intergenic | 40.0% | |
| TTTCCTCTTTCAACCATTCC+CGG | - | chr8.3:24558590-24558609 | None:intergenic | 40.0% | |
| ! | AGGTTTTGCAAGGGAGAATT+AGG | + | chr8.3:24559531-24559550 | MS.gene87320:intron | 40.0% |
| ! | TATATGTGTCGGTATCGTGT+CGG | - | chr8.3:24559164-24559183 | None:intergenic | 40.0% |
| ! | TCTATGCGACTAGTTACGTA+GGG | + | chr8.3:24559489-24559508 | MS.gene87320:intron | 40.0% |
| ! | TTTATGAATTAGGTGCTGCC+GGG | + | chr8.3:24558569-24558588 | MS.gene87320:intron | 40.0% |
| ACGGATTTGGACACGGATAT+CGG | - | chr8.3:24559253-24559272 | None:intergenic | 45.0% | |
| ATCAAGACACGTCTAATCCG+AGG | - | chr8.3:24559133-24559152 | None:intergenic | 45.0% | |
| ATGAAACGGCAAGGGAAGTT+TGG | - | chr8.3:24558402-24558421 | None:intergenic | 45.0% | |
| ATGTTTGAGCCAATGCATCC+GGG | - | chr8.3:24559664-24559683 | None:intergenic | 45.0% | |
| CACGGATATCGGACAAGATA+TGG | - | chr8.3:24559242-24559261 | None:intergenic | 45.0% | |
| CTACGTAACTAGTCGCATAG+AGG | - | chr8.3:24559490-24559509 | None:intergenic | 45.0% | |
| GAATGCATGGACCCAAGAAA+TGG | + | chr8.3:24559709-24559728 | MS.gene87320:CDS | 45.0% | |
| GCTAGAGAATTTCAGCCTCA+AGG | + | chr8.3:24558826-24558845 | MS.gene87320:CDS | 45.0% | |
| GGCATATACACGTTCAAGAC+CGG | + | chr8.3:24559687-24559706 | MS.gene87320:CDS | 45.0% | |
| TACCTGTTGAGCACAGTTGA+AGG | - | chr8.3:24558434-24558453 | None:intergenic | 45.0% | |
| TCGCATAGAGGTAAGCAGAT+GGG | - | chr8.3:24559478-24559497 | None:intergenic | 45.0% | |
| TGTTATGTTATGGGGTGCAG+AGG | + | chr8.3:24559578-24559597 | MS.gene87320:intron | 45.0% | |
| TTTCTTGGGTCCATGCATTC+CGG | - | chr8.3:24559709-24559728 | None:intergenic | 45.0% | |
| ! | CTCTATGCGACTAGTTACGT+AGG | + | chr8.3:24559488-24559507 | MS.gene87320:intron | 45.0% |
| !! | AAGTGGTGGTGAGAGTGTTA+TGG | + | chr8.3:24559637-24559656 | MS.gene87320:CDS | 45.0% |
| !! | GGAGTTGGTTTGGATTGAAG+AGG | - | chr8.3:24558352-24558371 | None:intergenic | 45.0% |
| !!! | ATGGTTTTATTGGCCCACCA+AGG | + | chr8.3:24558875-24558894 | MS.gene87320:CDS | 45.0% |
| ACAAACGAAACGCACCTTGG+TGG | - | chr8.3:24558892-24558911 | None:intergenic | 50.0% | |
| ACGTTCAAGACCGGAATGCA+TGG | + | chr8.3:24559696-24559715 | MS.gene87320:CDS | 50.0% | |
| AGAAACATGGCAAGCTCACG+AGG | + | chr8.3:24557831-24557850 | MS.gene87320:CDS | 50.0% | |
| ATGAGCAAACTTGCGAGCGA+TGG | - | chr8.3:24557901-24557920 | None:intergenic | 50.0% | |
| ATGTGGTGTGTGCATGAGAC+AGG | + | chr8.3:24558763-24558782 | MS.gene87320:intron | 50.0% | |
| ATTAGGACCGACGCCAACTA+TGG | - | chr8.3:24557868-24557887 | None:intergenic | 50.0% | |
| ATTGCAGCCATAGTTGGCGT+CGG | + | chr8.3:24557858-24557877 | MS.gene87320:CDS | 50.0% | |
| CAAACGAAACGCACCTTGGT+GGG | - | chr8.3:24558891-24558910 | None:intergenic | 50.0% | |
| CGCATAGAGGTAAGCAGATG+GGG | - | chr8.3:24559477-24559496 | None:intergenic | 50.0% | |
| GTCGCATAGAGGTAAGCAGA+TGG | - | chr8.3:24559479-24559498 | None:intergenic | 50.0% | |
| TATGGGGTGCAGAGGATCAT+CGG | + | chr8.3:24559586-24559605 | MS.gene87320:intron | 50.0% | |
| TGAGCTACATGCACTCCTTG+AGG | - | chr8.3:24558844-24558863 | None:intergenic | 50.0% | |
| TGCCTTCAACTGTGCTCAAC+AGG | + | chr8.3:24558429-24558448 | MS.gene87320:CDS | 50.0% | |
| TGTTATGGACCCGGATGCAT+TGG | + | chr8.3:24559652-24559671 | MS.gene87320:CDS | 50.0% | |
| ! | GCTCGCAAGTTTGCTCATGA+AGG | + | chr8.3:24557903-24557922 | MS.gene87320:CDS | 50.0% |
| !! | TGGTGAGAGTGTTATGGACC+CGG | + | chr8.3:24559643-24559662 | MS.gene87320:CDS | 50.0% |
| ACCGAGGGATGAAACGGCAA+GGG | - | chr8.3:24558410-24558429 | None:intergenic | 55.0% | |
| CAAACTTGCGAGCGATGGAG+AGG | - | chr8.3:24557896-24557915 | None:intergenic | 55.0% | |
| CTGCCGGGAATGGTTGAAAG+AGG | + | chr8.3:24558584-24558603 | MS.gene87320:CDS | 55.0% | |
| GTGTGCATGAGACAGGCTGT+GGG | + | chr8.3:24558770-24558789 | MS.gene87320:intron | 55.0% | |
| TCATACCTAAGTCACGGGCG+AGG | - | chr8.3:24557944-24557963 | None:intergenic | 55.0% | |
| TGTGTGCATGAGACAGGCTG+TGG | + | chr8.3:24558769-24558788 | MS.gene87320:intron | 55.0% | |
| ! | GAATTAGGTGCTGCCGGGAA+TGG | + | chr8.3:24558574-24558593 | MS.gene87320:intron | 55.0% |
| ! | TCCCTTGCCGTTTCATCCCT+CGG | + | chr8.3:24558406-24558425 | MS.gene87320:CDS | 55.0% |
| !! | AGCACAGTTGAAGGCACCGA+GGG | - | chr8.3:24558425-24558444 | None:intergenic | 55.0% |
| !! | GAAGGCACCGAGGGATGAAA+CGG | - | chr8.3:24558416-24558435 | None:intergenic | 55.0% |
| !! | GTTGGCGTCGGTCCTAATCT+CGG | + | chr8.3:24557870-24557889 | MS.gene87320:CDS | 55.0% |
| !! | TTATCAGCGGTGTCGGCTGT+CGG | + | chr8.3:24559213-24559232 | MS.gene87320:intron | 55.0% |
| ACAATGACGTCGTCGCGTGG+AGG | + | chr8.3:24559611-24559630 | MS.gene87320:CDS | 60.0% | |
| ACCTAAGTCACGGGCGAGGA+TGG | - | chr8.3:24557940-24557959 | None:intergenic | 60.0% | |
| CACCGAGGGATGAAACGGCA+AGG | - | chr8.3:24558411-24558430 | None:intergenic | 60.0% | |
| GCAACAATGACGTCGTCGCG+TGG | + | chr8.3:24559608-24559627 | MS.gene87320:CDS | 60.0% | |
| GCGATGGAGAGGCCGAGATT+AGG | - | chr8.3:24557885-24557904 | None:intergenic | 60.0% | |
| !! | GAGCACAGTTGAAGGCACCG+AGG | - | chr8.3:24558426-24558445 | None:intergenic | 60.0% |
| ATGACGTCGTCGCGTGGAGG+AGG | + | chr8.3:24559614-24559633 | MS.gene87320:CDS | 65.0% | |
| GCCATCCTCGCCCGTGACTT+AGG | + | chr8.3:24557936-24557955 | MS.gene87320:CDS | 65.0% | |
| GTCACGGGCGAGGATGGCAA+CGG | - | chr8.3:24557934-24557953 | None:intergenic | 65.0% | |
| TCGCGTGGAGGAGGAAGTGG+TGG | + | chr8.3:24559623-24559642 | MS.gene87320:CDS | 65.0% | |
| TCGTCGCGTGGAGGAGGAAG+TGG | + | chr8.3:24559620-24559639 | MS.gene87320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 24557828 | 24559754 | 24557828 | ID=MS.gene87320 |
| chr8.3 | mRNA | 24557828 | 24559754 | 24557828 | ID=MS.gene87320.t1;Parent=MS.gene87320 |
| chr8.3 | exon | 24557828 | 24557957 | 24557828 | ID=MS.gene87320.t1.exon1;Parent=MS.gene87320.t1 |
| chr8.3 | CDS | 24557828 | 24557957 | 24557828 | ID=cds.MS.gene87320.t1;Parent=MS.gene87320.t1 |
| chr8.3 | exon | 24558185 | 24558450 | 24558185 | ID=MS.gene87320.t1.exon2;Parent=MS.gene87320.t1 |
| chr8.3 | CDS | 24558185 | 24558450 | 24558185 | ID=cds.MS.gene87320.t1;Parent=MS.gene87320.t1 |
| chr8.3 | exon | 24558581 | 24558674 | 24558581 | ID=MS.gene87320.t1.exon3;Parent=MS.gene87320.t1 |
| chr8.3 | CDS | 24558581 | 24558674 | 24558581 | ID=cds.MS.gene87320.t1;Parent=MS.gene87320.t1 |
| chr8.3 | exon | 24558785 | 24558896 | 24558785 | ID=MS.gene87320.t1.exon4;Parent=MS.gene87320.t1 |
| chr8.3 | CDS | 24558785 | 24558896 | 24558785 | ID=cds.MS.gene87320.t1;Parent=MS.gene87320.t1 |
| chr8.3 | exon | 24559598 | 24559754 | 24559598 | ID=MS.gene87320.t1.exon5;Parent=MS.gene87320.t1 |
| chr8.3 | CDS | 24559598 | 24559754 | 24559598 | ID=cds.MS.gene87320.t1;Parent=MS.gene87320.t1 |
| Gene Sequence |
| Protein sequence |
