AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049907


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049907.t1 MTR_5g067170 98.444 257 4 0 1 257 1 257 0.0 530
MS.gene049907.t1 MTR_2g034990 75.385 260 60 2 1 257 1 259 4.48e-144 414
MS.gene049907.t1 MTR_5g029800 78.210 257 54 2 1 257 1 255 1.23e-140 405
MS.gene049907.t1 MTR_2g035020 71.154 260 71 2 1 257 1 259 3.99e-131 381
MS.gene049907.t1 MTR_7g012120 68.561 264 76 4 1 261 6 265 2.45e-120 353
MS.gene049907.t1 MTR_4g117960 61.679 274 97 4 1 269 1 271 5.25e-115 340
MS.gene049907.t1 MTR_4g117980 61.154 260 97 2 1 257 1 259 6.19e-109 324
MS.gene049907.t1 MTR_6g035185 60.000 265 102 2 1 262 1 264 3.94e-106 317
MS.gene049907.t1 MTR_6g035265 61.479 257 92 3 1 257 1 250 8.41e-104 311
MS.gene049907.t1 MTR_8g032950 58.301 259 101 3 2 257 3 257 1.86e-91 279
MS.gene049907.t1 MTR_4g117890 53.307 257 110 3 7 262 9 256 1.03e-88 272
MS.gene049907.t1 MTR_0536s0020 53.571 252 107 3 7 257 14 256 1.95e-88 271
MS.gene049907.t1 MTR_4g118000 54.183 251 102 3 7 256 8 246 1.86e-86 266
MS.gene049907.t1 MTR_0536s0010 52.381 252 110 3 6 257 16 257 2.96e-85 263
MS.gene049907.t1 MTR_4g117950 51.984 252 112 4 6 257 1 243 3.20e-82 255
MS.gene049907.t1 MTR_4g117970 59.341 182 65 3 78 257 56 230 1.66e-68 218
MS.gene049907.t1 MTR_2g035040 65.517 145 49 1 115 259 23 166 6.35e-66 211
MS.gene049907.t1 MTR_4g031800 38.554 249 141 5 8 251 6 247 4.84e-51 174
MS.gene049907.t1 MTR_0536s0030 42.466 219 112 5 36 251 5 212 1.14e-47 162
MS.gene049907.t1 MTR_2g035050 70.435 115 31 1 1 112 1 115 1.73e-46 152
MS.gene049907.t1 MTR_4g485630 33.852 257 155 6 10 257 8 258 1.69e-39 144
MS.gene049907.t1 MTR_5g039900 32.184 261 161 7 10 258 12 268 4.84e-37 137
MS.gene049907.t1 MTR_6g035295 33.205 259 159 8 10 256 11 267 1.34e-35 133
MS.gene049907.t1 MTR_5g016660 32.184 261 161 7 10 258 9 265 3.39e-35 132
MS.gene049907.t1 MTR_7g055710 31.734 271 161 7 1 255 1 263 7.48e-34 128
MS.gene049907.t1 MTR_7g070800 33.205 259 136 7 6 242 1 244 1.64e-33 127
MS.gene049907.t1 MTR_5g045960 30.534 262 162 8 12 257 8 265 2.74e-33 127
MS.gene049907.t1 MTR_7g117405 32.422 256 156 6 13 255 12 263 5.37e-33 126
MS.gene049907.t1 MTR_7g102450 33.463 257 141 9 13 256 11 250 4.20e-32 123
MS.gene049907.t1 MTR_7g070860 32.296 257 137 7 8 242 4 245 6.03e-32 123
MS.gene049907.t1 MTR_4g485590 32.046 259 133 7 12 257 10 238 1.42e-31 121
MS.gene049907.t1 MTR_7g070930 31.679 262 147 8 14 255 17 266 2.22e-31 122
MS.gene049907.t1 MTR_5g045970 30.385 260 161 7 15 259 20 274 3.56e-31 121
MS.gene049907.t1 MTR_7g071040 30.418 263 157 7 11 255 15 269 7.95e-31 120
MS.gene049907.t1 MTR_7g070910 32.197 264 151 9 11 255 9 263 2.82e-30 119
MS.gene049907.t1 MTR_7g070740 31.579 266 150 8 11 255 9 263 3.55e-30 118
MS.gene049907.t1 MTR_7g070780 32.184 261 146 6 1 242 1 249 6.26e-30 117
MS.gene049907.t1 MTR_7g070660 30.545 275 158 7 1 256 1 261 1.59e-29 116
MS.gene049907.t1 MTR_7g102560 29.924 264 167 9 11 261 7 265 4.69e-29 115
MS.gene049907.t1 MTR_5g040030 28.352 261 176 5 8 258 11 270 5.56e-29 115
MS.gene049907.t1 MTR_7g070810 32.946 258 148 6 8 249 6 254 9.25e-29 114
MS.gene049907.t1 MTR_8g066610 27.799 259 166 4 9 251 7 260 1.16e-28 114
MS.gene049907.t1 MTR_7g070610 30.827 266 152 8 11 255 11 265 1.30e-28 114
MS.gene049907.t1 MTR_1g062380 29.070 258 163 5 15 257 20 272 7.02e-27 109
MS.gene049907.t1 MTR_4g108250 30.108 279 156 8 1 258 1 261 1.40e-26 108
MS.gene049907.t1 MTR_1g040310 31.343 268 164 7 4 258 8 268 2.10e-26 108
MS.gene049907.t1 MTR_7g070940 31.295 278 159 8 8 268 6 268 5.66e-26 106
MS.gene049907.t1 MTR_7g102460 29.389 262 165 9 11 256 7 264 2.42e-25 105
MS.gene049907.t1 MTR_7g102490 28.571 266 163 9 11 256 7 265 5.06e-25 104
MS.gene049907.t1 MTR_7g071050 34.659 176 102 3 10 180 12 179 5.36e-25 103
MS.gene049907.t1 MTR_4g485620 26.210 248 155 5 23 246 1 244 2.16e-24 102
MS.gene049907.t1 MTR_4g024020 29.924 264 163 9 11 256 7 266 8.43e-24 100
MS.gene049907.t1 MTR_7g070870 31.765 255 152 6 8 249 16 261 2.31e-23 99.4
MS.gene049907.t1 MTR_8g044140 30.172 232 143 7 40 258 6 231 1.11e-22 97.4
MS.gene049907.t1 MTR_7g102550 28.409 264 166 9 13 259 9 266 1.39e-22 97.1
MS.gene049907.t1 MTR_4g485640 28.455 246 155 6 19 257 217 448 1.75e-22 97.4
MS.gene049907.t1 MTR_7g039570 27.586 232 157 4 10 232 13 242 3.05e-21 90.5
MS.gene049907.t1 MTR_7g102520 29.008 262 158 10 14 257 15 266 6.08e-21 92.4
MS.gene049907.t1 MTR_7g470590 36.290 124 73 2 1 118 1 124 5.65e-18 78.6
MS.gene049907.t1 MTR_7g070570 36.290 124 73 2 1 118 1 124 5.65e-18 78.6
MS.gene049907.t1 MTR_0009s0240 25.869 259 180 6 12 262 8 262 5.46e-17 80.9
MS.gene049907.t1 MTR_8g466240 26.613 248 164 9 16 256 13 249 1.57e-13 70.5
MS.gene049907.t1 MTR_8g068330 29.412 136 94 2 7 141 4 138 1.23e-11 65.1
MS.gene049907.t1 MTR_7g067330 29.452 146 95 4 9 149 5 147 7.07e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049907.t1 AT2G36790 32.210 267 159 9 8 257 8 269 1.10e-34 130
MS.gene049907.t1 AT4G34131 30.112 269 164 6 8 257 7 270 1.38e-34 130
MS.gene049907.t1 AT2G36770 33.712 264 151 8 12 257 13 270 2.76e-34 130
MS.gene049907.t1 AT2G36780 32.184 261 159 7 12 257 13 270 1.38e-31 122
MS.gene049907.t1 AT2G36750 33.083 266 161 7 5 257 4 265 2.35e-31 122
MS.gene049907.t1 AT2G36760 32.453 265 153 10 12 257 13 270 4.18e-31 121
MS.gene049907.t1 AT2G15490 29.740 269 153 7 14 257 10 267 6.07e-31 120
MS.gene049907.t1 AT2G36800 32.319 263 157 9 12 257 11 269 6.44e-31 120
MS.gene049907.t1 AT2G15490 29.740 269 153 7 14 257 10 267 6.70e-31 120
MS.gene049907.t1 AT2G15480 26.909 275 171 6 5 257 4 270 9.04e-31 120
MS.gene049907.t1 AT2G15480 26.909 275 171 6 5 257 4 270 1.09e-30 120
MS.gene049907.t1 AT4G34135 27.881 269 170 7 8 257 8 271 1.15e-30 117
MS.gene049907.t1 AT4G34135 28.253 269 169 7 8 257 8 271 1.24e-29 117
MS.gene049907.t1 AT4G34138 28.148 270 163 9 11 257 9 270 8.85e-29 114
MS.gene049907.t1 AT3G53160 31.439 264 161 8 9 257 6 264 3.32e-27 110
MS.gene049907.t1 AT3G53150 27.407 270 170 8 6 256 15 277 1.16e-26 108
MS.gene049907.t1 AT2G15490 31.771 192 106 5 14 188 10 193 9.93e-24 97.4
MS.gene049907.t1 AT5G03490 29.801 151 102 3 5 152 13 162 7.76e-14 71.6
MS.gene049907.t1 AT1G51210 33.553 152 83 7 10 152 17 159 1.13e-13 70.9
MS.gene049907.t1 AT1G73880 25.564 266 147 12 5 240 6 250 2.37e-12 67.0
MS.gene049907.t1 AT1G10400 24.335 263 175 9 11 254 5 262 5.84e-11 62.8

Find 70 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTTGTTGAACTTGA+TGG 0.268372 5.3:-53429552 MS.gene049907:CDS
GTCATAGATTCAACGCCTTT+AGG 0.310762 5.3:+53429963 None:intergenic
TCATAGATTCAACGCCTTTA+GGG 0.333517 5.3:+53429964 None:intergenic
GATCCATTGAATGTTAAATT+CGG 0.334638 5.3:+53429783 None:intergenic
AGGGAGGTCGACTTGTTGAT+AGG 0.345335 5.3:+53429983 None:intergenic
TGCTCCTCAACGAAGCGGTT+GGG 0.351626 5.3:-53429893 MS.gene049907:CDS
ATATTATCATGATGAAGATT+TGG 0.351658 5.3:+53429663 None:intergenic
TTGCTGATTCCGCGTTCTCA+TGG 0.354036 5.3:-53429836 MS.gene049907:CDS
ATCCCGAATTTAACATTCAA+TGG 0.363700 5.3:-53429786 MS.gene049907:CDS
ATCCATTGAATGTTAAATTC+GGG 0.400611 5.3:+53429784 None:intergenic
ATGAACATGCTGAGAACCTT+TGG 0.425074 5.3:+53429621 None:intergenic
TTCATTCCGTATCCAGCATC+TGG 0.429905 5.3:-53430149 MS.gene049907:CDS
GGCGGCGGATGAGAGAGTTT+TGG 0.438085 5.3:+53430031 None:intergenic
GTTCTCATGGGCTAATGACT+TGG 0.447500 5.3:-53429823 MS.gene049907:CDS
ACCACTTGGAAGATTCATAA+TGG 0.450011 5.3:-53429921 MS.gene049907:CDS
GGTCACAAGGCTTGGCATCT+TGG 0.455150 5.3:-53429495 MS.gene049907:CDS
GGGAGGTCGACTTGTTGATA+GGG 0.457690 5.3:+53429984 None:intergenic
GGCATCATGTGTCCAGATGC+TGG 0.461672 5.3:+53430137 None:intergenic
CAAAGTTGCTATATCACAAA+GGG 0.462011 5.3:+53430115 None:intergenic
ATTCGGGATTTGAAGCTTGT+GGG 0.466780 5.3:+53429800 None:intergenic
AAGTAAATTATTTGTTCGAA+GGG 0.467021 5.3:+53429731 None:intergenic
TGCTGATTCCGCGTTCTCAT+GGG 0.468665 5.3:-53429835 MS.gene049907:CDS
GCTCCTCAACGAAGCGGTTG+GGG 0.470800 5.3:-53429892 MS.gene049907:CDS
GGTAAGGGATTGAGCATTGG+AGG 0.477314 5.3:+53430052 None:intergenic
ATGAATCTTCCAAGTGGTGA+TGG 0.479162 5.3:+53429926 None:intergenic
AAACCACGGGTCACAAGGCT+TGG 0.486946 5.3:-53429503 MS.gene049907:CDS
GAAGTAAATTATTTGTTCGA+AGG 0.489932 5.3:+53429730 None:intergenic
TTTGGTAAGGGATTGAGCAT+TGG 0.505959 5.3:+53430049 None:intergenic
TGTTCAAGAGAAAGCAGAGA+AGG 0.508469 5.3:-53429448 MS.gene049907:CDS
CGCCGCCGTCCGTCTTCACA+CGG 0.509225 5.3:-53430015 MS.gene049907:CDS
GGATTGAGCATTGGAGGGAG+TGG 0.511295 5.3:+53430058 None:intergenic
AATTCGGGATTTGAAGCTTG+TGG 0.512657 5.3:+53429799 None:intergenic
CTTTGGTGGTTTACTACACA+AGG 0.515061 5.3:+53429638 None:intergenic
ATGCTCCTCAACGAAGCGGT+TGG 0.521793 5.3:-53429894 MS.gene049907:CDS
CAACAAGTCGACCTCCCTAA+AGG 0.529003 5.3:-53429978 MS.gene049907:CDS
GGAATGAAGTGAAGTTTCAA+TGG 0.529260 5.3:+53430164 None:intergenic
AAGGTTCTCAGCATGTTCAT+AGG 0.529589 5.3:-53429618 MS.gene049907:CDS
ATGTGTCCAGATGCTGGATA+CGG 0.533156 5.3:+53430143 None:intergenic
CGAGAAAACCACGGGTCACA+AGG 0.547846 5.3:-53429508 MS.gene049907:CDS
ATAAGTTGATAAGAAATGAA+TGG 0.552177 5.3:-53430203 None:intergenic
GTAAGGGATTGAGCATTGGA+GGG 0.556034 5.3:+53430053 None:intergenic
CGACTGATCCCATCACCACT+TGG 0.558485 5.3:-53429935 MS.gene049907:CDS
ATGAAGATTTGGAACGACAT+AGG 0.564250 5.3:+53429674 None:intergenic
GTTCAAGAGAAAGCAGAGAA+GGG 0.567378 5.3:-53429447 MS.gene049907:CDS
GCAACTTTGTTTGCATCACG+TGG 0.570638 5.3:-53430101 MS.gene049907:CDS
TGAATCTTCCAAGTGGTGAT+GGG 0.573205 5.3:+53429927 None:intergenic
TTTCGTTGAGAAGAATCCAC+CGG 0.580184 5.3:-53429868 MS.gene049907:CDS
GACACAGTGCTTAAAAGTAC+AGG 0.584468 5.3:-53429585 MS.gene049907:CDS
GGAAGTCAACCGTGTGAAGA+CGG 0.588981 5.3:+53430006 None:intergenic
GAATCAGCAATGATACAATC+CGG 0.589174 5.3:+53429849 None:intergenic
AGTGGTGATGGGATCAGTCG+TGG 0.601980 5.3:+53429938 None:intergenic
AACATGCTGAGAACCTTTGG+TGG 0.602305 5.3:+53429624 None:intergenic
ATGCCAAGCCTTGTGACCCG+TGG 0.606140 5.3:+53429500 None:intergenic
GGAGGTCGACTTGTTGATAG+GGG 0.612917 5.3:+53429985 None:intergenic
ACAAAGTTGCTATATCACAA+AGG 0.614008 5.3:+53430114 None:intergenic
GTCAACCGTGTGAAGACGGA+CGG 0.616365 5.3:+53430010 None:intergenic
AATCCCCAACCGCTTCGTTG+AGG 0.618266 5.3:+53429889 None:intergenic
GTCATTAGCCCATGAGAACG+CGG 0.627749 5.3:+53429827 None:intergenic
CGTGTGAAGACGGACGGCGG+CGG 0.629035 5.3:+53430016 None:intergenic
TAGATTCAACGCCTTTAGGG+AGG 0.636738 5.3:+53429967 None:intergenic
CGCAATGCTCCTCAACGAAG+CGG 0.640494 5.3:-53429898 MS.gene049907:CDS
TGGTGATGATTGTGACATGT+TGG 0.640976 5.3:+53430078 None:intergenic
AAACACTACGAGAAAACCAC+GGG 0.641022 5.3:-53429516 MS.gene049907:CDS
CTTGTGTAGTAAACCACCAA+AGG 0.649958 5.3:-53429637 MS.gene049907:CDS
AACCGTGTGAAGACGGACGG+CGG 0.658524 5.3:+53430013 None:intergenic
GCCATTATGAATCTTCCAAG+TGG 0.663209 5.3:+53429920 None:intergenic
TCAGCAATGATACAATCCGG+TGG 0.697559 5.3:+53429852 None:intergenic
CAAACACTACGAGAAAACCA+CGG 0.710721 5.3:-53429517 MS.gene049907:CDS
GGTGATGGGATCAGTCGTGG+AGG 0.715828 5.3:+53429941 None:intergenic
AAAGTTGCTATATCACAAAG+GGG 0.716769 5.3:+53430116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAATTATTTGTTCGAA+GGG + chr5.3:53428997-53429016 None:intergenic 20.0%
!! AAGTATTAATGTTATGGATT+TGG - chr5.3:53430070-53430089 MS.gene049907:CDS 20.0%
!! ATATTATCATGATGAAGATT+TGG + chr5.3:53429065-53429084 None:intergenic 20.0%
! AGCTAACAAATTATTATGAG+AGG + chr5.3:53429939-53429958 None:intergenic 25.0%
! ATAGTTGTTTATCAGAGAAA+TGG + chr5.3:53429397-53429416 None:intergenic 25.0%
! ATCCATTGAATGTTAAATTC+GGG + chr5.3:53428944-53428963 None:intergenic 25.0%
! CGTGATTAATCAAATGAATA+TGG - chr5.3:53429998-53430017 MS.gene049907:CDS 25.0%
! GAAGTAAATTATTTGTTCGA+AGG + chr5.3:53428998-53429017 None:intergenic 25.0%
! GATCCATTGAATGTTAAATT+CGG + chr5.3:53428945-53428964 None:intergenic 25.0%
! TATTCATTTGATTAATCACG+TGG + chr5.3:53429998-53430017 None:intergenic 25.0%
!! TTGAACAGTTTTACGAATAA+AGG + chr5.3:53429264-53429283 None:intergenic 25.0%
!!! AAGCAGAAGTATTAATGTTA+TGG - chr5.3:53430064-53430083 MS.gene049907:CDS 25.0%
AAAGAAGGGTTTCATAATCA+GGG - chr5.3:53429553-53429572 MS.gene049907:CDS 30.0%
AAAGTTGCTATATCACAAAG+GGG + chr5.3:53428612-53428631 None:intergenic 30.0%
AACAACTTTGTTGAACTTGA+TGG - chr5.3:53429173-53429192 MS.gene049907:intron 30.0%
ACAAAGTTGCTATATCACAA+AGG + chr5.3:53428614-53428633 None:intergenic 30.0%
ATCCCGAATTTAACATTCAA+TGG - chr5.3:53428939-53428958 MS.gene049907:intron 30.0%
CAAAGTTGCTATATCACAAA+GGG + chr5.3:53428613-53428632 None:intergenic 30.0%
! GCATATTTCAATTTTCACTG+TGG - chr5.3:53430177-53430196 MS.gene049907:CDS 30.0%
! GTTTTACGAATAAAGGAAGT+TGG + chr5.3:53429257-53429276 None:intergenic 30.0%
! TCAGTTGTGTACATATGTTT+TGG - chr5.3:53429362-53429381 MS.gene049907:intron 30.0%
!!! AAAAATGCTTTGCTGTTTTC+AGG - chr5.3:53430121-53430140 MS.gene049907:CDS 30.0%
AAGAAGGGTTTCATAATCAG+GGG - chr5.3:53429554-53429573 MS.gene049907:CDS 35.0%
AATGGTGTACAAATGGTAAC+GGG - chr5.3:53429771-53429790 MS.gene049907:CDS 35.0%
ACCACTTGGAAGATTCATAA+TGG - chr5.3:53428804-53428823 MS.gene049907:intron 35.0%
ATAACAACAGTCCGAAGAAT+TGG - chr5.3:53429728-53429747 MS.gene049907:CDS 35.0%
ATAACATAGAGAAGGCTATG+AGG - chr5.3:53429819-53429838 MS.gene049907:CDS 35.0%
GAAAGAAGGGTTTCATAATC+AGG - chr5.3:53429552-53429571 MS.gene049907:CDS 35.0%
GAATCAGCAATGATACAATC+CGG + chr5.3:53428879-53428898 None:intergenic 35.0%
GAATGGTGTACAAATGGTAA+CGG - chr5.3:53429770-53429789 MS.gene049907:CDS 35.0%
GAGAGAAACATTGGAAAGAA+GGG - chr5.3:53429539-53429558 MS.gene049907:CDS 35.0%
GGAATGAAGTGAAGTTTCAA+TGG + chr5.3:53428564-53428583 None:intergenic 35.0%
TCATAGATTCAACGCCTTTA+GGG + chr5.3:53428764-53428783 None:intergenic 35.0%
TCGAAGAAGAGAAAGAAAAG+TGG - chr5.3:53429498-53429517 MS.gene049907:CDS 35.0%
TGCTCAATATCAGAACTTGT+GGG + chr5.3:53429586-53429605 None:intergenic 35.0%
TTGCTCAATATCAGAACTTG+TGG + chr5.3:53429587-53429606 None:intergenic 35.0%
! ATGAAGATTTGGAACGACAT+AGG + chr5.3:53429054-53429073 None:intergenic 35.0%
!!! CTTTGCTGTTTTCAGGATTT+CGG - chr5.3:53430128-53430147 MS.gene049907:CDS 35.0%
AAACACTACGAGAAAACCAC+GGG - chr5.3:53429209-53429228 MS.gene049907:intron 40.0%
AACTCAATTGTAGAGGCTGT+TGG - chr5.3:53429644-53429663 MS.gene049907:CDS 40.0%
AAGGTTCTCAGCATGTTCAT+AGG - chr5.3:53429107-53429126 MS.gene049907:intron 40.0%
ACACGAGCTATTAAAGAAGG+TGG - chr5.3:53429911-53429930 MS.gene049907:CDS 40.0%
ATCAGGTCACCCATTCATAT+GGG - chr5.3:53429442-53429461 MS.gene049907:CDS 40.0%
ATGAACATGCTGAGAACCTT+TGG + chr5.3:53429107-53429126 None:intergenic 40.0%
ATGAATCTTCCAAGTGGTGA+TGG + chr5.3:53428802-53428821 None:intergenic 40.0%
CAAACACTACGAGAAAACCA+CGG - chr5.3:53429208-53429227 MS.gene049907:intron 40.0%
CAGGAACAACCCATATGAAT+GGG + chr5.3:53429454-53429473 None:intergenic 40.0%
CTACTTCCACTCCAATTCTT+CGG + chr5.3:53429742-53429761 None:intergenic 40.0%
CTTGTGTAGTAAACCACCAA+AGG - chr5.3:53429088-53429107 MS.gene049907:intron 40.0%
GACGAGACAACGATGTTATT+AGG + chr5.3:53430044-53430063 None:intergenic 40.0%
GAGCAGAGATAACATAGAGA+AGG - chr5.3:53429811-53429830 MS.gene049907:CDS 40.0%
GCCATTATGAATCTTCCAAG+TGG + chr5.3:53428808-53428827 None:intergenic 40.0%
GCTACACGAGCTATTAAAGA+AGG - chr5.3:53429908-53429927 MS.gene049907:CDS 40.0%
GCTCAATATCAGAACTTGTG+GGG + chr5.3:53429585-53429604 None:intergenic 40.0%
GGAGAGAAACATTGGAAAGA+AGG - chr5.3:53429538-53429557 MS.gene049907:CDS 40.0%
GGATTTGAGGAGAGAAACAT+TGG - chr5.3:53429530-53429549 MS.gene049907:CDS 40.0%
GTCATAGATTCAACGCCTTT+AGG + chr5.3:53428765-53428784 None:intergenic 40.0%
GTTCAAGAGAAAGCAGAGAA+GGG - chr5.3:53429278-53429297 MS.gene049907:intron 40.0%
TAACGGGGAGAGAAAAAAGT+TGG - chr5.3:53429787-53429806 MS.gene049907:CDS 40.0%
TCAGGAACAACCCATATGAA+TGG + chr5.3:53429455-53429474 None:intergenic 40.0%
TCTTCTTTCCCTTTCTTCTC+AGG + chr5.3:53429473-53429492 None:intergenic 40.0%
TGAATCTTCCAAGTGGTGAT+GGG + chr5.3:53428801-53428820 None:intergenic 40.0%
TGTTCAAGAGAAAGCAGAGA+AGG - chr5.3:53429277-53429296 MS.gene049907:intron 40.0%
TTTCGTTGAGAAGAATCCAC+CGG - chr5.3:53428857-53428876 MS.gene049907:intron 40.0%
TTTCTCTCCTCAAATCCCTT+CGG + chr5.3:53429527-53429546 None:intergenic 40.0%
TTTGGTAAGGGATTGAGCAT+TGG + chr5.3:53428679-53428698 None:intergenic 40.0%
! AATTCGGGATTTGAAGCTTG+TGG + chr5.3:53428929-53428948 None:intergenic 40.0%
! ATGGTGTACAAATGGTAACG+GGG - chr5.3:53429772-53429791 MS.gene049907:CDS 40.0%
! ATTCGGGATTTGAAGCTTGT+GGG + chr5.3:53428928-53428947 None:intergenic 40.0%
! CTTTGGTGGTTTACTACACA+AGG + chr5.3:53429090-53429109 None:intergenic 40.0%
! GACACAGTGCTTAAAAGTAC+AGG - chr5.3:53429140-53429159 MS.gene049907:intron 40.0%
! GTAACGGAATGGTGTACAAA+TGG - chr5.3:53429764-53429783 MS.gene049907:CDS 40.0%
! TGGTGATGATTGTGACATGT+TGG + chr5.3:53428650-53428669 None:intergenic 40.0%
!! GGATGAGAGAGTTTTGGTAA+GGG + chr5.3:53428691-53428710 None:intergenic 40.0%
AAAGAAAAGTGGCTGCCGAA+GGG - chr5.3:53429509-53429528 MS.gene049907:CDS 45.0%
AACAGTCCGAAGAATTGGAG+TGG - chr5.3:53429733-53429752 MS.gene049907:CDS 45.0%
AACATGCTGAGAACCTTTGG+TGG + chr5.3:53429104-53429123 None:intergenic 45.0%
AATTGTAGAGGCTGTTGGTG+CGG - chr5.3:53429649-53429668 MS.gene049907:CDS 45.0%
AGGGTTTCATAATCAGGGGT+TGG - chr5.3:53429558-53429577 MS.gene049907:CDS 45.0%
ATGTGTCCAGATGCTGGATA+CGG + chr5.3:53428585-53428604 None:intergenic 45.0%
CAGAAGTGATCTGCATGACA+AGG + chr5.3:53429695-53429714 None:intergenic 45.0%
CATCAGGTCACCCATTCATA+TGG - chr5.3:53429441-53429460 MS.gene049907:CDS 45.0%
CGAAGAATTGGAGTGGAAGT+AGG - chr5.3:53429740-53429759 MS.gene049907:CDS 45.0%
GAAGGCTATGAGGAGATTGA+TGG - chr5.3:53429829-53429848 MS.gene049907:CDS 45.0%
GCTATGAGGAGATTGATGGA+CGG - chr5.3:53429833-53429852 MS.gene049907:CDS 45.0%
GGGTTGTTCCTGAGAAGAAA+GGG - chr5.3:53429462-53429481 MS.gene049907:CDS 45.0%
GGGTTTCATAATCAGGGGTT+GGG - chr5.3:53429559-53429578 MS.gene049907:CDS 45.0%
TCAGCAATGATACAATCCGG+TGG + chr5.3:53428876-53428895 None:intergenic 45.0%
TCTGATATTGAGCAACCCTG+CGG - chr5.3:53429592-53429611 MS.gene049907:CDS 45.0%
TGACAAGGCCACGTTATCAT+TGG + chr5.3:53429680-53429699 None:intergenic 45.0%
TGGAGTGGAAGTAGGTGTAA+CGG - chr5.3:53429748-53429767 MS.gene049907:CDS 45.0%
TGGGTTGTTCCTGAGAAGAA+AGG - chr5.3:53429461-53429480 MS.gene049907:CDS 45.0%
TTCATTCCGTATCCAGCATC+TGG - chr5.3:53428576-53428595 MS.gene049907:CDS 45.0%
! GCAACTTTGTTTGCATCACG+TGG - chr5.3:53428624-53428643 MS.gene049907:intron 45.0%
! GTTCTCATGGGCTAATGACT+TGG - chr5.3:53428902-53428921 MS.gene049907:intron 45.0%
! TAGATTCAACGCCTTTAGGG+AGG + chr5.3:53428761-53428780 None:intergenic 45.0%
! TGGAAGTAGGTGTAACGGAA+TGG - chr5.3:53429753-53429772 MS.gene049907:CDS 45.0%
!! CGGATGAGAGAGTTTTGGTA+AGG + chr5.3:53428692-53428711 None:intergenic 45.0%
!! GTAAGGGATTGAGCATTGGA+GGG + chr5.3:53428675-53428694 None:intergenic 45.0%
AGACAACGTGCTCGAGAGTT+AGG - chr5.3:53429878-53429897 MS.gene049907:CDS 50.0%
ATATTGAGCAACCCTGCGGT+GGG - chr5.3:53429596-53429615 MS.gene049907:CDS 50.0%
ATTGTAGAGGCTGTTGGTGC+GGG - chr5.3:53429650-53429669 MS.gene049907:CDS 50.0%
CAACAAGTCGACCTCCCTAA+AGG - chr5.3:53428747-53428766 MS.gene049907:intron 50.0%
GAAAGAAAAGTGGCTGCCGA+AGG - chr5.3:53429508-53429527 MS.gene049907:CDS 50.0%
GATTTCTGACACATTGCGGG+GGG - chr5.3:53429621-53429640 MS.gene049907:CDS 50.0%
GCTGTGATTTGAGCCAGTTC+AGG + chr5.3:53429334-53429353 None:intergenic 50.0%
GGAAGTCAACCGTGTGAAGA+CGG + chr5.3:53428722-53428741 None:intergenic 50.0%
GGATTTCTGACACATTGCGG+GGG - chr5.3:53429620-53429639 MS.gene049907:CDS 50.0%
GGGATTTCTGACACATTGCG+GGG - chr5.3:53429619-53429638 MS.gene049907:CDS 50.0%
GGGGATTTCTGACACATTGC+GGG - chr5.3:53429618-53429637 MS.gene049907:CDS 50.0%
GGGGGATTTCTGACACATTG+CGG - chr5.3:53429617-53429636 MS.gene049907:CDS 50.0%
GTCATTAGCCCATGAGAACG+CGG + chr5.3:53428901-53428920 None:intergenic 50.0%
TGCTCGAGAGTTAGGAGAGA+AGG - chr5.3:53429886-53429905 MS.gene049907:CDS 50.0%
! ATGAGGAGATTGATGGACGG+TGG - chr5.3:53429836-53429855 MS.gene049907:CDS 50.0%
! CGGGAGTTCCAATGATAACG+TGG - chr5.3:53429669-53429688 MS.gene049907:CDS 50.0%
!! AGGGAGGTCGACTTGTTGAT+AGG + chr5.3:53428745-53428764 None:intergenic 50.0%
!! GCGTGTGCAATAGAAGCATC+AGG - chr5.3:53429425-53429444 MS.gene049907:intron 50.0%
!! GGAGGTCGACTTGTTGATAG+GGG + chr5.3:53428743-53428762 None:intergenic 50.0%
!! GGGAGGTCGACTTGTTGATA+GGG + chr5.3:53428744-53428763 None:intergenic 50.0%
!! GGTAAGGGATTGAGCATTGG+AGG + chr5.3:53428676-53428695 None:intergenic 50.0%
!! TGCTGATTCCGCGTTCTCAT+GGG - chr5.3:53428890-53428909 MS.gene049907:intron 50.0%
!! TTGCTGATTCCGCGTTCTCA+TGG - chr5.3:53428889-53428908 MS.gene049907:intron 50.0%
AAACCACGGGTCACAAGGCT+TGG - chr5.3:53429222-53429241 MS.gene049907:intron 55.0%
AATCCCCAACCGCTTCGTTG+AGG + chr5.3:53428839-53428858 None:intergenic 55.0%
ATGCTCCTCAACGAAGCGGT+TGG - chr5.3:53428831-53428850 MS.gene049907:intron 55.0%
CGACTGATCCCATCACCACT+TGG - chr5.3:53428790-53428809 MS.gene049907:intron 55.0%
CGAGAAAACCACGGGTCACA+AGG - chr5.3:53429217-53429236 MS.gene049907:intron 55.0%
CGCAATGCTCCTCAACGAAG+CGG - chr5.3:53428827-53428846 MS.gene049907:intron 55.0%
CGGGGGGAACTCAATTGTAG+AGG - chr5.3:53429637-53429656 MS.gene049907:CDS 55.0%
GATATTGAGCAACCCTGCGG+TGG - chr5.3:53429595-53429614 MS.gene049907:CDS 55.0%
GGCATCATGTGTCCAGATGC+TGG + chr5.3:53428591-53428610 None:intergenic 55.0%
GGTCACAAGGCTTGGCATCT+TGG - chr5.3:53429230-53429249 MS.gene049907:intron 55.0%
GTCAACCGTGTGAAGACGGA+CGG + chr5.3:53428718-53428737 None:intergenic 55.0%
TATTGAGCAACCCTGCGGTG+GGG - chr5.3:53429597-53429616 MS.gene049907:CDS 55.0%
TGCTCCTCAACGAAGCGGTT+GGG - chr5.3:53428832-53428851 MS.gene049907:intron 55.0%
!! AGTGGTGATGGGATCAGTCG+TGG + chr5.3:53428790-53428809 None:intergenic 55.0%
!! GGATTGAGCATTGGAGGGAG+TGG + chr5.3:53428670-53428689 None:intergenic 55.0%
AACCGTGTGAAGACGGACGG+CGG + chr5.3:53428715-53428734 None:intergenic 60.0%
ATTGAGCAACCCTGCGGTGG+GGG - chr5.3:53429598-53429617 MS.gene049907:CDS 60.0%
GCTCCTCAACGAAGCGGTTG+GGG - chr5.3:53428833-53428852 MS.gene049907:intron 60.0%
GTGGCTGCCGAAGGGATTTG+AGG - chr5.3:53429517-53429536 MS.gene049907:CDS 60.0%
TCAGAAATCCCCCCACCGCA+GGG + chr5.3:53429610-53429629 None:intergenic 60.0%
! ATGCCAAGCCTTGTGACCCG+TGG + chr5.3:53429228-53429247 None:intergenic 60.0%
! GGCGGCGGATGAGAGAGTTT+TGG + chr5.3:53428697-53428716 None:intergenic 60.0%
!! GGTGATGGGATCAGTCGTGG+AGG + chr5.3:53428787-53428806 None:intergenic 60.0%
GCGAGCACGAGTGCCTGAAC+TGG - chr5.3:53429318-53429337 MS.gene049907:intron 65.0%
GTCAGAAATCCCCCCACCGC+AGG + chr5.3:53429611-53429630 None:intergenic 65.0%
TTGAGCAACCCTGCGGTGGG+GGG - chr5.3:53429599-53429618 MS.gene049907:CDS 65.0%
CGCCGCCGTCCGTCTTCACA+CGG - chr5.3:53428710-53428729 MS.gene049907:intron 70.0%
CGTGTGAAGACGGACGGCGG+CGG + chr5.3:53428712-53428731 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 53428537 53430210 53428537 ID=MS.gene049907
chr5.3 mRNA 53428537 53430210 53428537 ID=MS.gene049907.t1;Parent=MS.gene049907
chr5.3 exon 53429439 53430210 53429439 ID=MS.gene049907.t1.exon1;Parent=MS.gene049907.t1
chr5.3 CDS 53429439 53430210 53429439 ID=cds.MS.gene049907.t1;Parent=MS.gene049907.t1
chr5.3 exon 53428537 53428604 53428537 ID=MS.gene049907.t1.exon2;Parent=MS.gene049907.t1
chr5.3 CDS 53428537 53428604 53428537 ID=cds.MS.gene049907.t1;Parent=MS.gene049907.t1
Gene Sequence

>MS.gene049907

ATGAATGGTGTTGAAGTTGAACGACCATTGAAACTTCACTTCATTCCGTATCCAGCATCTGGACACATGATGCCCCTTTGTGATATAGCAACTTTGTTTGCATCACGTGGCCAACATGTCACAATCATCACCACTCCCTCCAATGCTCAATCCCTTACCAAAACTCTCTCATCCGCCGCCGTCCGTCTTCACACGGTTGACTTCCCCTATCAACAAGTCGACCTCCCTAAAGGCGTTGAATCTATGACCTCCACGACTGATCCCATCACCACTTGGAAGATTCATAATGGCGCAATGCTCCTCAACGAAGCGGTTGGGGATTTCGTTGAGAAGAATCCACCGGATTGTATCATTGCTGATTCCGCGTTCTCATGGGCTAATGACTTGGCCCACAAGCTTCAAATCCCGAATTTAACATTCAATGGATCGTCTCTTTTTGCTGTCTCGATCTTTCATTCCCTTCGAACAAATAATTTACTTCATACAGATGCTGATGATGATTCAGATTCAAGTTCCTATGTCGTTCCAAATCTTCATCATGATAATATCACCTTGTGTAGTAAACCACCAAAGGTTCTCAGCATGTTCATAGGAATGATGCTTGACACAGTGCTTAAAAGTACAGGCTACATCATCAACAACTTTGTTGAACTTGATGGAGAAGAGTGTGTCAAACACTACGAGAAAACCACGGGTCACAAGGCTTGGCATCTTGGTCCAACTTCCTTTATTCGTAAAACTGTTCAAGAGAAAGCAGAGAAGGGAAATGAGAGTGATGTGAGCGAGCACGAGTGCCTGAACTGGCTCAAATCACAGCGACGAAACTCAGTTGTGTACATATGTTTTGGAAGCATAAACCATTTCTCTGATAAACAACTATATGAGATTGCGTGTGCAATAGAAGCATCAGGTCACCCATTCATATGGGTTGTTCCTGAGAAGAAAGGGAAAGAAGATGAGATCGAAGAAGAGAAAGAAAAGTGGCTGCCGAAGGGATTTGAGGAGAGAAACATTGGAAAGAAGGGTTTCATAATCAGGGGTTGGGCCCCACAAGTTCTGATATTGAGCAACCCTGCGGTGGGGGGATTTCTGACACATTGCGGGGGGAACTCAATTGTAGAGGCTGTTGGTGCGGGAGTTCCAATGATAACGTGGCCTTGTCATGCAGATCACTTCTGCAATGAGAAATTGATAACAACAGTCCGAAGAATTGGAGTGGAAGTAGGTGTAACGGAATGGTGTACAAATGGTAACGGGGAGAGAAAAAAGTTGGTGAGCAGAGATAACATAGAGAAGGCTATGAGGAGATTGATGGACGGTGGCGATGAAGCTGAAAATATGAGACAACGTGCTCGAGAGTTAGGAGAGAAGGCTACACGAGCTATTAAAGAAGGTGGTTCCTCTCATAATAATTTGTTAGCTTTGATCGACGAACTTAAAAGATTGAGAGACAGCAAGCCACGTGATTAATCAAATGAATATGGTATGAGTTTTTTGAACTTATCCTAATAACATCGTTGTCTCGTCAAGCAGAAGTATTAATGTTATGGATTTGGTCGATGAATTTCTATTGAATACTAGCATAAAAATGCTTTGCTGTTTTCAGGATTTCGGTCGATGATTTTGTTTTACTTATCATTGCATATTTCAATTTTCACTGTGGTACTACGTTGA

Protein sequence

>MS.gene049907.t1

MNGVEVERPLKLHFIPYPASGHMMPLCDIATLFASRGQHVTIITTPSNAQSLTKTLSSAAVRLHTVDFPYQQVDLPKGVESMTSTTDPITTWKIHNGAMLLNEAVGDFVEKNPPDCIIADSAFSWANDLAHKLQIPNLTFNGSSLFAVSIFHSLRTNNLLHTDADDDSDSSSYVVPNLHHDNITLCSKPPKVLSMFIGMMLDTVLKSTGYIINNFVELDGEECVKHYEKTTGHKAWHLGPTSFIRKTVQEKAEKGNERFRSMILFYLSLHISIFTVVLR