Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87434.t1 | RZC04659.1 | 66.8 | 662 | 215 | 3 | 47 | 704 | 221 | 881 | 8.80E-265 | 922.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87434.t1 | P08770 | 34.7 | 669 | 388 | 13 | 63 | 704 | 141 | 787 | 4.6e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87434.t1 | A0A445K1Q5 | 66.8 | 662 | 215 | 3 | 47 | 704 | 221 | 881 | 6.3e-265 | 922.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057102 | MS.gene87434 | 0.810519 | 1.11E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87434.t1 | MTR_4g036325 | 60.204 | 98 | 38 | 1 | 152 | 248 | 2 | 99 | 1.61e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87434.t1 | AT3G42170 | 32.519 | 655 | 401 | 14 | 33 | 661 | 13 | 652 | 9.44e-111 | 350 |
| MS.gene87434.t1 | AT3G42170 | 32.519 | 655 | 401 | 14 | 33 | 661 | 35 | 674 | 1.39e-110 | 350 |
| MS.gene87434.t1 | AT1G18560 | 22.901 | 524 | 371 | 11 | 152 | 661 | 145 | 649 | 1.12e-28 | 122 |
Find 124 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACGAAGCTTAAAGTTAA+TGG | 0.121499 | 8.3:+26489231 | MS.gene87434:CDS |
| TTCAGCTTCACTCTTCAAAA+TGG | 0.170935 | 8.3:-26491406 | None:intergenic |
| CATTTCTTTAATCAAATTAT+TGG | 0.241200 | 8.3:-26490506 | None:intergenic |
| AACGGAGTTGGATCATTATC+TGG | 0.259746 | 8.3:+26490846 | MS.gene87434:CDS |
| CAAGAAGTTTCTTGCAATAA+TGG | 0.264840 | 8.3:-26489272 | None:intergenic |
| CATTATTGCAAGAAACTTCT+TGG | 0.265382 | 8.3:+26489273 | MS.gene87434:CDS |
| TTCCTAATTCTTTCTTTCCT+TGG | 0.277019 | 8.3:-26489410 | None:intergenic |
| TGCAGAAATTTGATAAATAT+TGG | 0.280085 | 8.3:+26490542 | MS.gene87434:CDS |
| CCACATCAGAATATCAAAAT+TGG | 0.289304 | 8.3:-26490893 | None:intergenic |
| CGAGATTTGTAAGATCAAAT+TGG | 0.290931 | 8.3:+26490459 | MS.gene87434:CDS |
| TTTGGATCCAAGATACAAAA+TGG | 0.298966 | 8.3:+26490600 | MS.gene87434:CDS |
| TCTTTCTTTCCTTGGCCCTT+TGG | 0.310853 | 8.3:-26489402 | None:intergenic |
| TATTTAAATGTTTACTTGAA+TGG | 0.313417 | 8.3:+26489909 | MS.gene87434:CDS |
| GATGGGAGTTGCTACTGTTT+TGG | 0.320873 | 8.3:+26490582 | MS.gene87434:CDS |
| TCAGAAGCTACTGAAGTAAT+AGG | 0.323940 | 8.3:-26490979 | None:intergenic |
| AAAACACTTGCTTCATCATA+TGG | 0.325245 | 8.3:+26489317 | MS.gene87434:CDS |
| CACATTATATTGATGGATCT+TGG | 0.325892 | 8.3:+26489724 | MS.gene87434:CDS |
| ACTGGACTGCAACTCCTAAA+AGG | 0.326823 | 8.3:+26490149 | MS.gene87434:CDS |
| ATTTGTACTACAATTATCTA+AGG | 0.330397 | 8.3:-26489960 | None:intergenic |
| CAATAATTTGATTAAAGAAA+TGG | 0.336226 | 8.3:+26490507 | MS.gene87434:CDS |
| TTCGAGATAGTGTAGCTTAC+TGG | 0.339966 | 8.3:+26490131 | MS.gene87434:CDS |
| ATATCAAAATTGGCACTTCT+AGG | 0.340733 | 8.3:-26490883 | None:intergenic |
| TGCTATGATTGACAAAATTA+AGG | 0.352231 | 8.3:+26489985 | MS.gene87434:CDS |
| GGCCAAGGAAAGAAAGAATT+AGG | 0.356074 | 8.3:+26489408 | MS.gene87434:CDS |
| GTTTAGACTGTCCAACTAGA+TGG | 0.363378 | 8.3:+26490230 | MS.gene87434:CDS |
| GTTACTGCACATTATATTGA+TGG | 0.379284 | 8.3:+26489717 | MS.gene87434:CDS |
| CAATTTGATCTTACAAATCT+CGG | 0.381654 | 8.3:-26490458 | None:intergenic |
| TTTGCAATTTCTTGCAATGT+TGG | 0.382104 | 8.3:-26490940 | None:intergenic |
| TAGTAGAAATACCATCAAAA+AGG | 0.384314 | 8.3:+26489569 | MS.gene87434:CDS |
| GAACTTGAAACAATGGTTGC+AGG | 0.386030 | 8.3:-26489545 | None:intergenic |
| AACTTCCATTGTTGACTAGT+TGG | 0.391211 | 8.3:-26490343 | None:intergenic |
| AAAAGATGTTTGTGAAAGAT+TGG | 0.407988 | 8.3:+26490369 | MS.gene87434:CDS |
| TTATCATCTGTGATATCAAT+AGG | 0.408739 | 8.3:-26489150 | None:intergenic |
| CTTATAATCCTGAAAATTCA+AGG | 0.408763 | 8.3:+26489439 | MS.gene87434:CDS |
| GGTGCTTCTAGTATTTCATT+TGG | 0.412807 | 8.3:-26489129 | None:intergenic |
| CTTGGTGGAAAATCAACTAA+TGG | 0.416784 | 8.3:+26489291 | MS.gene87434:CDS |
| AAGATCTTACATTCATCATC+AGG | 0.417940 | 8.3:-26491277 | None:intergenic |
| AGTATCACTGAACTCATATC+TGG | 0.426833 | 8.3:+26490403 | MS.gene87434:CDS |
| ACAGAGGCATTGGCAGAAAC+AGG | 0.429765 | 8.3:+26489174 | MS.gene87434:CDS |
| TCAGCTTCACTCTTCAAAAT+GGG | 0.432393 | 8.3:-26491405 | None:intergenic |
| TACGTGGAGTTCCATCTAGT+TGG | 0.446126 | 8.3:-26490241 | None:intergenic |
| GAGTGAGACCAGTAGTAGTT+TGG | 0.451269 | 8.3:-26489086 | None:intergenic |
| CCATCCCTCAACAAAGTACT+TGG | 0.453316 | 8.3:-26490019 | None:intergenic |
| TAGCAACTCCCATCATATCC+TGG | 0.454437 | 8.3:-26490573 | None:intergenic |
| CATGAGAACAAGACAACTAA+AGG | 0.458724 | 8.3:+26489363 | MS.gene87434:CDS |
| GCTTCTAGTATTTCATTTGG+TGG | 0.459250 | 8.3:-26489126 | None:intergenic |
| GCTAATTCTGTGGCTAATGA+TGG | 0.459373 | 8.3:+26490763 | MS.gene87434:CDS |
| TAACAGCAGGCGTCGGAGTA+AGG | 0.460436 | 8.3:+26489197 | MS.gene87434:CDS |
| TATATTAAATTTGATAGTAA+AGG | 0.462368 | 8.3:+26490072 | MS.gene87434:CDS |
| ACTTCATTGGACAACCTTGA+AGG | 0.462670 | 8.3:+26491050 | MS.gene87434:CDS |
| TGTTTGATAGTCTTCAATCA+AGG | 0.463299 | 8.3:+26489637 | MS.gene87434:CDS |
| CTATGGAGCAAGGAGAATAA+TGG | 0.470206 | 8.3:+26491096 | MS.gene87434:CDS |
| TCAAATTGGCAATATCTGAT+TGG | 0.473321 | 8.3:+26490473 | MS.gene87434:CDS |
| TAAAAGGAAGGAAAGATTTG+AGG | 0.473646 | 8.3:+26490165 | MS.gene87434:CDS |
| ACTCTGTTGAGCAAGTTAAG+AGG | 0.474739 | 8.3:+26490662 | MS.gene87434:CDS |
| GAGTGTCACCCAGGATATGA+TGG | 0.476745 | 8.3:+26490564 | MS.gene87434:CDS |
| GGATAATGTTGGTAATTCTC+AGG | 0.478704 | 8.3:+26489035 | MS.gene87434:CDS |
| AGCACACATCAAAGCCTTCA+AGG | 0.479174 | 8.3:-26491064 | None:intergenic |
| CTCATCGTAGTCGACTTCAT+TGG | 0.485204 | 8.3:+26491037 | MS.gene87434:CDS |
| AATTTGATCTTACAAATCTC+GGG | 0.487617 | 8.3:-26490457 | None:intergenic |
| GCAGGCGTCGGAGTAAGGTA+TGG | 0.491355 | 8.3:+26489202 | MS.gene87434:CDS |
| TAAAGTTAATGGAGAAGATA+AGG | 0.493123 | 8.3:+26489242 | MS.gene87434:CDS |
| TGGTTTAGAAGTAGTGAAGG+AGG | 0.493562 | 8.3:+26490096 | MS.gene87434:CDS |
| GTTTAGAAGTAGTGAAGGAG+GGG | 0.493841 | 8.3:+26490098 | MS.gene87434:CDS |
| TAGAACATCATTATATAAAA+CGG | 0.495038 | 8.3:+26490828 | MS.gene87434:CDS |
| ATCATTATATAAAACGGAGT+TGG | 0.499119 | 8.3:+26490834 | MS.gene87434:CDS |
| TGAGCCAAGTACTTTGTTGA+GGG | 0.500136 | 8.3:+26490015 | MS.gene87434:CDS |
| TTCTTTAATCAAATTATTGG+AGG | 0.501683 | 8.3:-26490503 | None:intergenic |
| TAAAGAAATGGCTAAGAAGA+TGG | 0.502305 | 8.3:+26490519 | MS.gene87434:CDS |
| CTATCACTTGAATGAGGAGC+AGG | 0.508504 | 8.3:-26489872 | None:intergenic |
| ATGAGAACAAGACAACTAAA+GGG | 0.511905 | 8.3:+26489364 | MS.gene87434:CDS |
| GGATGGTTTAGAAGTAGTGA+AGG | 0.519064 | 8.3:+26490093 | MS.gene87434:CDS |
| TCTAGTATTTCATTTGGTGG+TGG | 0.521386 | 8.3:-26489123 | None:intergenic |
| CCAAGTACTTTGTTGAGGGA+TGG | 0.521479 | 8.3:+26490019 | MS.gene87434:CDS |
| ACATCAGACATGTGGACCTC+AGG | 0.522328 | 8.3:+26489669 | MS.gene87434:CDS |
| TTAAATTTGATAGTAAAGGA+TGG | 0.523395 | 8.3:+26490076 | MS.gene87434:CDS |
| ACATGATCAACGATGGAAAG+TGG | 0.524047 | 8.3:-26489498 | None:intergenic |
| GCAAACACTTCTTGTGCCAA+AGG | 0.528005 | 8.3:+26489386 | MS.gene87434:CDS |
| AGTGCACACCAAACTACTAC+TGG | 0.530092 | 8.3:+26489078 | MS.gene87434:CDS |
| TATTGCAAGAAACTTCTTGG+TGG | 0.530813 | 8.3:+26489276 | MS.gene87434:CDS |
| CTTTGATGTGTGCTAGAAGT+TGG | 0.533931 | 8.3:+26491073 | MS.gene87434:CDS |
| GAATCAGCATTCAGTACAAG+TGG | 0.537506 | 8.3:+26491000 | MS.gene87434:CDS |
| AGATGATAATACAGAGGCAT+TGG | 0.538621 | 8.3:+26489164 | MS.gene87434:CDS |
| CTACTAGGAACTTGAAACAA+TGG | 0.539368 | 8.3:-26489552 | None:intergenic |
| GTTTGATAGTCTTCAATCAA+GGG | 0.547183 | 8.3:+26489638 | MS.gene87434:CDS |
| AGCAACTCCCATCATATCCT+GGG | 0.551068 | 8.3:-26490572 | None:intergenic |
| TAGTGAAGGAGGGGATTGAG+CGG | 0.551350 | 8.3:+26490107 | MS.gene87434:CDS |
| TTGAGCCAAGTACTTTGTTG+AGG | 0.552495 | 8.3:+26490014 | MS.gene87434:CDS |
| AACTTGAAACAATGGTTGCA+GGG | 0.554226 | 8.3:-26489544 | None:intergenic |
| GGTTTAGAAGTAGTGAAGGA+GGG | 0.559256 | 8.3:+26490097 | MS.gene87434:CDS |
| TGGTGGTGGTTGAGATGATG+AGG | 0.562079 | 8.3:-26489109 | None:intergenic |
| TAAATATTGGAGTGTCACCC+AGG | 0.565226 | 8.3:+26490555 | MS.gene87434:CDS |
| GGTCCACATGTCTGATGTAA+TGG | 0.568531 | 8.3:-26489664 | None:intergenic |
| TGGCAGAAACAGGTAACAGC+AGG | 0.569494 | 8.3:+26489184 | MS.gene87434:CDS |
| CAAACACTTCTTGTGCCAAA+GGG | 0.569527 | 8.3:+26489387 | MS.gene87434:CDS |
| ACGGAGTTGGATCATTATCT+GGG | 0.571432 | 8.3:+26490847 | MS.gene87434:CDS |
| TTCATGCATAATTATTGCAG+AGG | 0.572651 | 8.3:-26489472 | None:intergenic |
| CTGATGTGGTGGAAGTTGAA+TGG | 0.578791 | 8.3:+26490907 | MS.gene87434:CDS |
| ATTTACAGAGTCGCATCTTG+AGG | 0.580131 | 8.3:+26489748 | MS.gene87434:CDS |
| CAGGCGTCGGAGTAAGGTAT+GGG | 0.580766 | 8.3:+26489203 | MS.gene87434:CDS |
| ATTATGATGCATATGTCAAG+AGG | 0.590157 | 8.3:+26490794 | MS.gene87434:CDS |
| AAGTTCAATCAAGACACTTG+TGG | 0.595420 | 8.3:+26490727 | MS.gene87434:CDS |
| TAGAAGTTGGCTATGGAGCA+AGG | 0.597997 | 8.3:+26491086 | MS.gene87434:CDS |
| GACTGCAACTCCTAAAAGGA+AGG | 0.598534 | 8.3:+26490153 | MS.gene87434:CDS |
| AAAATAAACATGATCAACGA+TGG | 0.599389 | 8.3:-26489505 | None:intergenic |
| CAAAGTCTATCACTTGAATG+AGG | 0.607514 | 8.3:-26489878 | None:intergenic |
| AGACACTTGTGGTGAATCGT+CGG | 0.609844 | 8.3:+26490738 | MS.gene87434:CDS |
| GGTGGTGGTTGAGATGATGA+GGG | 0.613545 | 8.3:-26489108 | None:intergenic |
| CTTCTTGTGCCAAAGGGCCA+AGG | 0.617416 | 8.3:+26489393 | MS.gene87434:CDS |
| GAAATGGACATGGATAATGT+TGG | 0.622790 | 8.3:+26489024 | None:intergenic |
| AACTCAACAGGAAATGGACA+TGG | 0.624712 | 8.3:+26489014 | None:intergenic |
| AGTGTCACCCAGGATATGAT+GGG | 0.628166 | 8.3:+26490565 | MS.gene87434:CDS |
| TAAAAGTGTATGAGTTTGAG+CGG | 0.628481 | 8.3:+26489598 | MS.gene87434:CDS |
| TGTGTGCTAGAAGTTGGCTA+TGG | 0.638996 | 8.3:+26491079 | MS.gene87434:CDS |
| ATAGGTGAAATATTGACTAG+TGG | 0.646439 | 8.3:+26491374 | MS.gene87434:intron |
| AAACAGGTAACAGCAGGCGT+CGG | 0.649330 | 8.3:+26489190 | MS.gene87434:CDS |
| CCTCGTACAAAATAGCTATG+TGG | 0.651628 | 8.3:-26490273 | None:intergenic |
| TGATAGTCTTCAATCAAGGG+TGG | 0.654543 | 8.3:+26489641 | MS.gene87434:CDS |
| GTGCTCCAACTAGTCAACAA+TGG | 0.671858 | 8.3:+26490338 | MS.gene87434:CDS |
| TGGCCATTACATCAGACATG+TGG | 0.677334 | 8.3:+26489661 | MS.gene87434:CDS |
| ATCGTCGGAAGCTAATTCTG+TGG | 0.696219 | 8.3:+26490753 | MS.gene87434:CDS |
| CAATGAAGTCGACTACGATG+AGG | 0.702001 | 8.3:-26491036 | None:intergenic |
| TATCACAGATGATAATACAG+AGG | 0.709484 | 8.3:+26489158 | MS.gene87434:CDS |
| TATGTGGAGCATCTTATACG+TGG | 0.757438 | 8.3:-26490257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTATTTTTTATTATAT+AGG | + | chr8.3:26491356-26491375 | MS.gene87434:intron | 10.0% |
| !!! | TATATTAAATTTGATAGTAA+AGG | + | chr8.3:26490072-26490091 | MS.gene87434:CDS | 10.0% |
| !! | AAACATTAAAGTTAGTAAAT+TGG | - | chr8.3:26491328-26491347 | None:intergenic | 15.0% |
| !! | CAATAATTTGATTAAAGAAA+TGG | + | chr8.3:26490507-26490526 | MS.gene87434:CDS | 15.0% |
| !! | CATTTCTTTAATCAAATTAT+TGG | - | chr8.3:26490509-26490528 | None:intergenic | 15.0% |
| !! | TAGAACATCATTATATAAAA+CGG | + | chr8.3:26490828-26490847 | MS.gene87434:CDS | 15.0% |
| !! | TATTTAAATGTTTACTTGAA+TGG | + | chr8.3:26489909-26489928 | MS.gene87434:CDS | 15.0% |
| !!! | TACTATTTTGAAAAATTGTA+TGG | + | chr8.3:26490634-26490653 | MS.gene87434:CDS | 15.0% |
| !!! | TTTTAATATATCCTTTTTGA+TGG | - | chr8.3:26489583-26489602 | None:intergenic | 15.0% |
| !! | ATTAAAGTTAGTAAATTGGA+AGG | - | chr8.3:26491324-26491343 | None:intergenic | 20.0% |
| !! | ATTTGTACTACAATTATCTA+AGG | - | chr8.3:26489963-26489982 | None:intergenic | 20.0% |
| !! | CTTTCAATTTACATATCTTA+AGG | + | chr8.3:26491136-26491155 | MS.gene87434:intron | 20.0% |
| !! | TATGAATGTTATTACTTGTT+AGG | + | chr8.3:26489837-26489856 | MS.gene87434:intron | 20.0% |
| !! | TGCAGAAATTTGATAAATAT+TGG | + | chr8.3:26490542-26490561 | MS.gene87434:CDS | 20.0% |
| !! | TTCTTTAATCAAATTATTGG+AGG | - | chr8.3:26490506-26490525 | None:intergenic | 20.0% |
| !!! | TTAAATTTGATAGTAAAGGA+TGG | + | chr8.3:26490076-26490095 | MS.gene87434:CDS | 20.0% |
| ! | AAAAGATGTTTGTGAAAGAT+TGG | + | chr8.3:26490369-26490388 | MS.gene87434:CDS | 25.0% |
| ! | AAAATAAACATGATCAACGA+TGG | - | chr8.3:26489508-26489527 | None:intergenic | 25.0% |
| ! | AATTTGATCTTACAAATCTC+GGG | - | chr8.3:26490460-26490479 | None:intergenic | 25.0% |
| ! | ATCATTATATAAAACGGAGT+TGG | + | chr8.3:26490834-26490853 | MS.gene87434:CDS | 25.0% |
| ! | CAATTTGATCTTACAAATCT+CGG | - | chr8.3:26490461-26490480 | None:intergenic | 25.0% |
| ! | CTTATAATCCTGAAAATTCA+AGG | + | chr8.3:26489439-26489458 | MS.gene87434:CDS | 25.0% |
| ! | GGAAGGTAGTATTAAATAAA+TGG | - | chr8.3:26491307-26491326 | None:intergenic | 25.0% |
| ! | TAAAGTTAATGGAGAAGATA+AGG | + | chr8.3:26489242-26489261 | MS.gene87434:CDS | 25.0% |
| ! | TAGTAGAAATACCATCAAAA+AGG | + | chr8.3:26489569-26489588 | MS.gene87434:CDS | 25.0% |
| ! | TGCTATGATTGACAAAATTA+AGG | + | chr8.3:26489985-26490004 | MS.gene87434:CDS | 25.0% |
| ! | TTATCATCTGTGATATCAAT+AGG | - | chr8.3:26489153-26489172 | None:intergenic | 25.0% |
| !! | TAATCAAAAAAAGGGGTATA+TGG | + | chr8.3:26489692-26489711 | MS.gene87434:CDS | 25.0% |
| !!! | TCGTTGATCATGTTTATTTT+AGG | + | chr8.3:26489508-26489527 | MS.gene87434:CDS | 25.0% |
| !!! | TTTTTGATGGTATTTCTACT+AGG | - | chr8.3:26489570-26489589 | None:intergenic | 25.0% |
| AAAACACTTGCTTCATCATA+TGG | + | chr8.3:26489317-26489336 | MS.gene87434:CDS | 30.0% | |
| AAGATCTTACATTCATCATC+AGG | - | chr8.3:26491280-26491299 | None:intergenic | 30.0% | |
| AATCTCGGGAAAAAACATAT+TGG | - | chr8.3:26490446-26490465 | None:intergenic | 30.0% | |
| ACCTCAGGTAATCAAAAAAA+GGG | + | chr8.3:26489684-26489703 | MS.gene87434:CDS | 30.0% | |
| ACTGCATTTGCATTATTTAC+AGG | + | chr8.3:26491199-26491218 | MS.gene87434:intron | 30.0% | |
| ATATCAAAATTGGCACTTCT+AGG | - | chr8.3:26490886-26490905 | None:intergenic | 30.0% | |
| ATGAGAACAAGACAACTAAA+GGG | + | chr8.3:26489364-26489383 | MS.gene87434:CDS | 30.0% | |
| ATTATGATGCATATGTCAAG+AGG | + | chr8.3:26490794-26490813 | MS.gene87434:CDS | 30.0% | |
| CAAGAAGTTTCTTGCAATAA+TGG | - | chr8.3:26489275-26489294 | None:intergenic | 30.0% | |
| CATTATTGCAAGAAACTTCT+TGG | + | chr8.3:26489273-26489292 | MS.gene87434:CDS | 30.0% | |
| CCACATCAGAATATCAAAAT+TGG | - | chr8.3:26490896-26490915 | None:intergenic | 30.0% | |
| CGAGATTTGTAAGATCAAAT+TGG | + | chr8.3:26490459-26490478 | MS.gene87434:CDS | 30.0% | |
| GTTACTGCACATTATATTGA+TGG | + | chr8.3:26489717-26489736 | MS.gene87434:CDS | 30.0% | |
| TAAAAGGAAGGAAAGATTTG+AGG | + | chr8.3:26490165-26490184 | MS.gene87434:CDS | 30.0% | |
| TAAAGAAATGGCTAAGAAGA+TGG | + | chr8.3:26490519-26490538 | MS.gene87434:CDS | 30.0% | |
| TATCACAGATGATAATACAG+AGG | + | chr8.3:26489158-26489177 | MS.gene87434:CDS | 30.0% | |
| TCAAATTGGCAATATCTGAT+TGG | + | chr8.3:26490473-26490492 | MS.gene87434:CDS | 30.0% | |
| TTCACGAAGCTTAAAGTTAA+TGG | + | chr8.3:26489231-26489250 | MS.gene87434:CDS | 30.0% | |
| TTCATGCATAATTATTGCAG+AGG | - | chr8.3:26489475-26489494 | None:intergenic | 30.0% | |
| TTCCTAATTCTTTCTTTCCT+TGG | - | chr8.3:26489413-26489432 | None:intergenic | 30.0% | |
| TTTGCAATTTCTTGCAATGT+TGG | - | chr8.3:26490943-26490962 | None:intergenic | 30.0% | |
| TTTGGATCCAAGATACAAAA+TGG | + | chr8.3:26490600-26490619 | MS.gene87434:CDS | 30.0% | |
| ! | AGGATGTATTTTCTAGATTG+AGG | + | chr8.3:26490293-26490312 | MS.gene87434:CDS | 30.0% |
| ! | AGTTCTTTCCTTGAATTTTC+AGG | - | chr8.3:26489450-26489469 | None:intergenic | 30.0% |
| ! | ATAGGTGAAATATTGACTAG+TGG | + | chr8.3:26491374-26491393 | MS.gene87434:intron | 30.0% |
| ! | CACATTATATTGATGGATCT+TGG | + | chr8.3:26489724-26489743 | MS.gene87434:CDS | 30.0% |
| ! | GTTTGATAGTCTTCAATCAA+GGG | + | chr8.3:26489638-26489657 | MS.gene87434:CDS | 30.0% |
| ! | TAAAAGTGTATGAGTTTGAG+CGG | + | chr8.3:26489598-26489617 | MS.gene87434:CDS | 30.0% |
| ! | TCAAATCTTTCCTTCCTTTT+AGG | - | chr8.3:26490166-26490185 | None:intergenic | 30.0% |
| ! | TGTTTGATAGTCTTCAATCA+AGG | + | chr8.3:26489637-26489656 | MS.gene87434:CDS | 30.0% |
| !! | ATTTTGATATTCTGATGTGG+TGG | + | chr8.3:26490896-26490915 | MS.gene87434:CDS | 30.0% |
| !! | CCAATTTTGATATTCTGATG+TGG | + | chr8.3:26490893-26490912 | MS.gene87434:CDS | 30.0% |
| AACTTGAAACAATGGTTGCA+GGG | - | chr8.3:26489547-26489566 | None:intergenic | 35.0% | |
| AAGTTCAATCAAGACACTTG+TGG | + | chr8.3:26490727-26490746 | MS.gene87434:CDS | 35.0% | |
| AGTATCACTGAACTCATATC+TGG | + | chr8.3:26490403-26490422 | MS.gene87434:CDS | 35.0% | |
| CAAAGTCTATCACTTGAATG+AGG | - | chr8.3:26489881-26489900 | None:intergenic | 35.0% | |
| CATGAGAACAAGACAACTAA+AGG | + | chr8.3:26489363-26489382 | MS.gene87434:CDS | 35.0% | |
| CCTCAGGTAATCAAAAAAAG+GGG | + | chr8.3:26489685-26489704 | MS.gene87434:CDS | 35.0% | |
| CTACTAGGAACTTGAAACAA+TGG | - | chr8.3:26489555-26489574 | None:intergenic | 35.0% | |
| CTTGGTGGAAAATCAACTAA+TGG | + | chr8.3:26489291-26489310 | MS.gene87434:CDS | 35.0% | |
| GACCTCAGGTAATCAAAAAA+AGG | + | chr8.3:26489683-26489702 | MS.gene87434:CDS | 35.0% | |
| GCTTCTAGTATTTCATTTGG+TGG | - | chr8.3:26489129-26489148 | None:intergenic | 35.0% | |
| GGAAAAAACATATTGGCAGT+AGG | - | chr8.3:26490439-26490458 | None:intergenic | 35.0% | |
| GGTGCTTCTAGTATTTCATT+TGG | - | chr8.3:26489132-26489151 | None:intergenic | 35.0% | |
| TATTGCAAGAAACTTCTTGG+TGG | + | chr8.3:26489276-26489295 | MS.gene87434:CDS | 35.0% | |
| TCAGAAGCTACTGAAGTAAT+AGG | - | chr8.3:26490982-26491001 | None:intergenic | 35.0% | |
| ! | AACTTCCATTGTTGACTAGT+TGG | - | chr8.3:26490346-26490365 | None:intergenic | 35.0% |
| ! | AGATGATAATACAGAGGCAT+TGG | + | chr8.3:26489164-26489183 | MS.gene87434:CDS | 35.0% |
| ! | AGCAACTCCATTTTGTATCT+TGG | - | chr8.3:26490610-26490629 | None:intergenic | 35.0% |
| ! | TCTAGTATTTCATTTGGTGG+TGG | - | chr8.3:26489126-26489145 | None:intergenic | 35.0% |
| !! | GGATAATGTTGGTAATTCTC+AGG | + | chr8.3:26489035-26489054 | MS.gene87434:CDS | 35.0% |
| AACGGAGTTGGATCATTATC+TGG | + | chr8.3:26490846-26490865 | MS.gene87434:CDS | 40.0% | |
| ACATGATCAACGATGGAAAG+TGG | - | chr8.3:26489501-26489520 | None:intergenic | 40.0% | |
| ACGGAGTTGGATCATTATCT+GGG | + | chr8.3:26490847-26490866 | MS.gene87434:CDS | 40.0% | |
| ACTCTGTTGAGCAAGTTAAG+AGG | + | chr8.3:26490662-26490681 | MS.gene87434:CDS | 40.0% | |
| ACTTCATTGGACAACCTTGA+AGG | + | chr8.3:26491050-26491069 | MS.gene87434:CDS | 40.0% | |
| ATTTACAGAGTCGCATCTTG+AGG | + | chr8.3:26489748-26489767 | MS.gene87434:CDS | 40.0% | |
| CAAACACTTCTTGTGCCAAA+GGG | + | chr8.3:26489387-26489406 | MS.gene87434:CDS | 40.0% | |
| CCTCGTACAAAATAGCTATG+TGG | - | chr8.3:26490276-26490295 | None:intergenic | 40.0% | |
| CTATGGAGCAAGGAGAATAA+TGG | + | chr8.3:26491096-26491115 | MS.gene87434:CDS | 40.0% | |
| CTTTGATGTGTGCTAGAAGT+TGG | + | chr8.3:26491073-26491092 | MS.gene87434:CDS | 40.0% | |
| GAACTTGAAACAATGGTTGC+AGG | - | chr8.3:26489548-26489567 | None:intergenic | 40.0% | |
| GAATCAGCATTCAGTACAAG+TGG | + | chr8.3:26491000-26491019 | MS.gene87434:CDS | 40.0% | |
| GCTAATTCTGTGGCTAATGA+TGG | + | chr8.3:26490763-26490782 | MS.gene87434:CDS | 40.0% | |
| GGATGGTTTAGAAGTAGTGA+AGG | + | chr8.3:26490093-26490112 | MS.gene87434:CDS | 40.0% | |
| GGCCAAGGAAAGAAAGAATT+AGG | + | chr8.3:26489408-26489427 | MS.gene87434:CDS | 40.0% | |
| GGTTTAGAAGTAGTGAAGGA+GGG | + | chr8.3:26490097-26490116 | MS.gene87434:CDS | 40.0% | |
| GTTTAGAAGTAGTGAAGGAG+GGG | + | chr8.3:26490098-26490117 | MS.gene87434:CDS | 40.0% | |
| GTTTAGACTGTCCAACTAGA+TGG | + | chr8.3:26490230-26490249 | MS.gene87434:CDS | 40.0% | |
| TGAGCCAAGTACTTTGTTGA+GGG | + | chr8.3:26490015-26490034 | MS.gene87434:CDS | 40.0% | |
| TGATAGTCTTCAATCAAGGG+TGG | + | chr8.3:26489641-26489660 | MS.gene87434:CDS | 40.0% | |
| TGGTTTAGAAGTAGTGAAGG+AGG | + | chr8.3:26490096-26490115 | MS.gene87434:CDS | 40.0% | |
| TTCGAGATAGTGTAGCTTAC+TGG | + | chr8.3:26490131-26490150 | MS.gene87434:CDS | 40.0% | |
| TTGAGCCAAGTACTTTGTTG+AGG | + | chr8.3:26490014-26490033 | MS.gene87434:CDS | 40.0% | |
| ! | TAAATATTGGAGTGTCACCC+AGG | + | chr8.3:26490555-26490574 | MS.gene87434:CDS | 40.0% |
| ! | TATGTGGAGCATCTTATACG+TGG | - | chr8.3:26490260-26490279 | None:intergenic | 40.0% |
| !! | CCACATAGCTATTTTGTACG+AGG | + | chr8.3:26490273-26490292 | MS.gene87434:CDS | 40.0% |
| !!! | CCCCTTTTTTTGATTACCTG+AGG | - | chr8.3:26489688-26489707 | None:intergenic | 40.0% |
| ACTGGACTGCAACTCCTAAA+AGG | + | chr8.3:26490149-26490168 | MS.gene87434:CDS | 45.0% | |
| AGACACTTGTGGTGAATCGT+CGG | + | chr8.3:26490738-26490757 | MS.gene87434:CDS | 45.0% | |
| AGCAACTCCCATCATATCCT+GGG | - | chr8.3:26490575-26490594 | None:intergenic | 45.0% | |
| AGCACACATCAAAGCCTTCA+AGG | - | chr8.3:26491067-26491086 | None:intergenic | 45.0% | |
| AGTGCACACCAAACTACTAC+TGG | + | chr8.3:26489078-26489097 | MS.gene87434:CDS | 45.0% | |
| AGTGTCACCCAGGATATGAT+GGG | + | chr8.3:26490565-26490584 | MS.gene87434:CDS | 45.0% | |
| ATCGTCGGAAGCTAATTCTG+TGG | + | chr8.3:26490753-26490772 | MS.gene87434:CDS | 45.0% | |
| CAATGAAGTCGACTACGATG+AGG | - | chr8.3:26491039-26491058 | None:intergenic | 45.0% | |
| CCAAGTACTTTGTTGAGGGA+TGG | + | chr8.3:26490019-26490038 | MS.gene87434:CDS | 45.0% | |
| CTATCACTTGAATGAGGAGC+AGG | - | chr8.3:26489875-26489894 | None:intergenic | 45.0% | |
| GACTGCAACTCCTAAAAGGA+AGG | + | chr8.3:26490153-26490172 | MS.gene87434:CDS | 45.0% | |
| GAGTGAGACCAGTAGTAGTT+TGG | - | chr8.3:26489089-26489108 | None:intergenic | 45.0% | |
| GCAAACACTTCTTGTGCCAA+AGG | + | chr8.3:26489386-26489405 | MS.gene87434:CDS | 45.0% | |
| GGTCCACATGTCTGATGTAA+TGG | - | chr8.3:26489667-26489686 | None:intergenic | 45.0% | |
| GTGCTCCAACTAGTCAACAA+TGG | + | chr8.3:26490338-26490357 | MS.gene87434:CDS | 45.0% | |
| TACGTGGAGTTCCATCTAGT+TGG | - | chr8.3:26490244-26490263 | None:intergenic | 45.0% | |
| TAGAAGTTGGCTATGGAGCA+AGG | + | chr8.3:26491086-26491105 | MS.gene87434:CDS | 45.0% | |
| TAGCAACTCCCATCATATCC+TGG | - | chr8.3:26490576-26490595 | None:intergenic | 45.0% | |
| TCTTTCTTTCCTTGGCCCTT+TGG | - | chr8.3:26489405-26489424 | None:intergenic | 45.0% | |
| TGGCCATTACATCAGACATG+TGG | + | chr8.3:26489661-26489680 | MS.gene87434:CDS | 45.0% | |
| TGTGTGCTAGAAGTTGGCTA+TGG | + | chr8.3:26491079-26491098 | MS.gene87434:CDS | 45.0% | |
| ! | CCATCCCTCAACAAAGTACT+TGG | - | chr8.3:26490022-26490041 | None:intergenic | 45.0% |
| ! | CTCATCGTAGTCGACTTCAT+TGG | + | chr8.3:26491037-26491056 | MS.gene87434:CDS | 45.0% |
| ! | CTGATGTGGTGGAAGTTGAA+TGG | + | chr8.3:26490907-26490926 | MS.gene87434:CDS | 45.0% |
| ! | GATGGGAGTTGCTACTGTTT+TGG | + | chr8.3:26490582-26490601 | MS.gene87434:CDS | 45.0% |
| AAACAGGTAACAGCAGGCGT+CGG | + | chr8.3:26489190-26489209 | MS.gene87434:CDS | 50.0% | |
| ACATCAGACATGTGGACCTC+AGG | + | chr8.3:26489669-26489688 | MS.gene87434:CDS | 50.0% | |
| GAGTGTCACCCAGGATATGA+TGG | + | chr8.3:26490564-26490583 | MS.gene87434:CDS | 50.0% | |
| TAGTGAAGGAGGGGATTGAG+CGG | + | chr8.3:26490107-26490126 | MS.gene87434:CDS | 50.0% | |
| TGGCAGAAACAGGTAACAGC+AGG | + | chr8.3:26489184-26489203 | MS.gene87434:CDS | 50.0% | |
| ! | GGTGGTGGTTGAGATGATGA+GGG | - | chr8.3:26489111-26489130 | None:intergenic | 50.0% |
| !! | ACAGAGGCATTGGCAGAAAC+AGG | + | chr8.3:26489174-26489193 | MS.gene87434:CDS | 50.0% |
| !! | TGGTGGTGGTTGAGATGATG+AGG | - | chr8.3:26489112-26489131 | None:intergenic | 50.0% |
| CTTCTTGTGCCAAAGGGCCA+AGG | + | chr8.3:26489393-26489412 | MS.gene87434:CDS | 55.0% | |
| !! | CAGGCGTCGGAGTAAGGTAT+GGG | + | chr8.3:26489203-26489222 | MS.gene87434:CDS | 55.0% |
| !! | TAACAGCAGGCGTCGGAGTA+AGG | + | chr8.3:26489197-26489216 | MS.gene87434:CDS | 55.0% |
| !! | GCAGGCGTCGGAGTAAGGTA+TGG | + | chr8.3:26489202-26489221 | MS.gene87434:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26489027 | 26491421 | 26489027 | ID=MS.gene87434 |
| chr8.3 | mRNA | 26489027 | 26491421 | 26489027 | ID=MS.gene87434.t1;Parent=MS.gene87434 |
| chr8.3 | exon | 26489027 | 26489769 | 26489027 | ID=MS.gene87434.t1.exon1;Parent=MS.gene87434.t1 |
| chr8.3 | CDS | 26489027 | 26489769 | 26489027 | ID=cds.MS.gene87434.t1;Parent=MS.gene87434.t1 |
| chr8.3 | exon | 26489859 | 26491117 | 26489859 | ID=MS.gene87434.t1.exon2;Parent=MS.gene87434.t1 |
| chr8.3 | CDS | 26489859 | 26491117 | 26489859 | ID=cds.MS.gene87434.t1;Parent=MS.gene87434.t1 |
| chr8.3 | exon | 26491221 | 26491289 | 26491221 | ID=MS.gene87434.t1.exon3;Parent=MS.gene87434.t1 |
| chr8.3 | CDS | 26491221 | 26491289 | 26491221 | ID=cds.MS.gene87434.t1;Parent=MS.gene87434.t1 |
| chr8.3 | exon | 26491378 | 26491421 | 26491378 | ID=MS.gene87434.t1.exon4;Parent=MS.gene87434.t1 |
| chr8.3 | CDS | 26491378 | 26491421 | 26491378 | ID=cds.MS.gene87434.t1;Parent=MS.gene87434.t1 |
| Gene Sequence |
| Protein sequence |
