AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87550.t1 MTR_4g022960 94.005 367 20 1 231 595 546 912 0.0 689
MS.gene87550.t1 MTR_4g022960 90.909 132 12 0 1 132 1 132 1.07e-58 212
MS.gene87550.t1 MTR_4g022960 75.229 109 17 3 133 233 326 432 1.06e-36 147
MS.gene87550.t1 MTR_4g022540 70.213 423 90 3 213 602 551 970 0.0 556
MS.gene87550.t1 MTR_4g022540 91.603 131 11 0 1 131 1 131 1.42e-58 212
MS.gene87550.t1 MTR_4g022540 66.917 133 12 2 133 233 326 458 3.54e-35 142
MS.gene87550.t1 MTR_4g022460 67.048 437 107 4 199 602 542 974 0.0 547
MS.gene87550.t1 MTR_4g022460 93.893 131 8 0 1 131 1 131 3.92e-57 208
MS.gene87550.t1 MTR_4g022460 61.940 134 18 2 133 233 326 459 3.33e-38 151
MS.gene87550.t1 MTR_4g021690 63.387 437 121 5 199 602 543 973 4.02e-178 531
MS.gene87550.t1 MTR_4g021690 92.424 132 10 0 1 132 1 132 7.97e-57 207
MS.gene87550.t1 MTR_4g021690 47.679 237 84 6 35 233 225 459 1.08e-43 168
MS.gene87550.t1 MTR_4g022480 65.826 436 112 4 203 602 539 973 4.55e-178 531
MS.gene87550.t1 MTR_4g022480 93.893 131 8 0 1 131 1 131 4.59e-58 211
MS.gene87550.t1 MTR_4g022480 66.667 132 13 1 133 233 326 457 6.96e-36 144
MS.gene87550.t1 MTR_4g022560 68.889 405 93 1 231 602 572 976 1.05e-174 523
MS.gene87550.t1 MTR_4g022560 86.364 132 18 0 1 132 1 132 1.66e-55 203
MS.gene87550.t1 MTR_4g022560 63.910 133 16 2 133 233 326 458 1.75e-39 155
MS.gene87550.t1 MTR_4g022950 70.350 371 94 3 236 593 1 368 1.63e-165 478
MS.gene87550.t1 MTR_5g028340 29.224 438 233 13 223 602 567 985 1.66e-34 140
MS.gene87550.t1 MTR_5g028420 30.543 442 235 14 223 602 561 992 6.28e-34 138
MS.gene87550.t1 MTR_5g028290 29.596 446 233 13 223 602 594 1024 9.12e-33 135
MS.gene87550.t1 MTR_2g078070 30.854 363 199 10 231 549 572 926 5.13e-32 132
MS.gene87550.t1 MTR_4g022490 57.534 146 19 2 1 146 1 103 2.44e-30 115
MS.gene87550.t1 MTR_5g028070 28.224 411 213 12 231 570 714 1113 4.89e-30 126
MS.gene87550.t1 MTR_8g043600 36.630 273 71 7 127 298 280 551 5.92e-30 124
MS.gene87550.t1 MTR_8g043600 57.282 103 29 2 31 132 13 101 4.06e-24 107
MS.gene87550.t1 MTR_5g028750 28.472 432 240 11 231 602 557 979 6.92e-30 126
MS.gene87550.t1 MTR_5g028610 29.604 429 229 12 228 599 566 978 1.29e-26 115
MS.gene87550.t1 MTR_6g016430 26.923 364 210 11 231 544 567 924 1.62e-26 115
MS.gene87550.t1 MTR_3g015280 35.556 225 107 5 229 420 558 777 1.44e-25 112
MS.gene87550.t1 MTR_3g015280 34.074 135 56 2 132 233 322 456 7.87e-19 91.3
MS.gene87550.t1 MTR_3g015280 45.631 103 54 1 25 127 24 124 6.65e-13 72.4
MS.gene87550.t1 MTR_3g015550 32.342 269 123 7 229 442 595 859 8.30e-25 110
MS.gene87550.t1 MTR_3g015550 37.778 135 51 2 132 233 359 493 1.15e-20 97.1
MS.gene87550.t1 MTR_3g015550 47.573 103 52 1 25 127 61 161 5.35e-15 79.0
MS.gene87550.t1 MTR_3g015550 32.342 269 123 7 229 442 558 822 9.29e-25 110
MS.gene87550.t1 MTR_3g015550 37.778 135 51 2 132 233 322 456 1.14e-20 97.1
MS.gene87550.t1 MTR_3g015550 47.573 103 52 1 25 127 24 124 4.59e-15 79.3
MS.gene87550.t1 MTR_4g050790 33.468 248 119 5 229 434 558 801 1.32e-24 109
MS.gene87550.t1 MTR_4g050790 45.631 103 54 1 25 127 24 124 7.65e-21 97.4
MS.gene87550.t1 MTR_4g050790 37.778 135 51 2 132 233 322 456 9.35e-21 97.4
MS.gene87550.t1 MTR_3g015560 31.321 265 128 5 229 442 557 818 1.75e-24 108
MS.gene87550.t1 MTR_3g015560 37.037 135 52 2 132 233 322 456 7.06e-20 94.7
MS.gene87550.t1 MTR_3g015560 48.544 103 51 1 25 127 24 124 3.20e-15 79.7
MS.gene87550.t1 MTR_4g126000 25.799 438 233 13 133 484 272 703 2.92e-24 108
MS.gene87550.t1 MTR_6g046620 29.323 399 233 15 197 576 501 869 5.16e-24 107
MS.gene87550.t1 MTR_6g046480 28.831 385 236 13 234 602 576 938 1.35e-23 106
MS.gene87550.t1 MTR_6g016420 27.901 362 207 8 231 544 545 900 5.73e-23 104
MS.gene87550.t1 MTR_6g052455 31.395 258 150 9 233 472 468 716 3.77e-22 102
MS.gene87550.t1 MTR_3g015500 41.935 124 70 1 4 127 41 162 8.05e-22 100
MS.gene87550.t1 MTR_3g015500 32.068 237 117 3 229 434 596 819 5.07e-21 98.2
MS.gene87550.t1 MTR_3g015500 36.296 135 53 2 132 233 360 494 7.35e-20 94.7
MS.gene87550.t1 MTR_7g071940 28.788 396 230 17 233 593 573 951 1.22e-21 100
MS.gene87550.t1 MTR_7g071940 33.333 129 52 4 133 230 325 450 9.14e-12 68.9
MS.gene87550.t1 MTR_5g072340 28.191 376 231 15 233 593 583 934 2.22e-21 99.4
MS.gene87550.t1 MTR_5g070490 25.066 379 239 13 233 593 578 929 8.58e-21 97.8
MS.gene87550.t1 MTR_4g119195 39.583 144 78 4 1 139 1 140 1.88e-20 96.3
MS.gene87550.t1 MTR_6g016420 27.451 357 207 9 231 546 545 890 1.90e-20 96.7
MS.gene87550.t1 MTR_4g119195 39.583 144 78 4 1 139 1 140 2.07e-20 96.3
MS.gene87550.t1 MTR_5g076840 40.278 144 77 4 1 139 1 140 3.46e-20 95.5
MS.gene87550.t1 MTR_6g052760 29.885 261 150 9 233 472 578 826 6.03e-20 95.1
MS.gene87550.t1 MTR_0144s0060 28.158 380 210 14 233 593 572 907 1.05e-19 94.4
MS.gene87550.t1 MTR_8g446950 27.491 291 178 10 233 504 626 902 1.51e-19 94.0
MS.gene87550.t1 MTR_5g070960 26.972 393 241 14 233 593 583 961 2.85e-19 92.8
MS.gene87550.t1 MTR_3g027250 29.582 311 165 14 227 510 582 865 3.22e-19 92.8
MS.gene87550.t1 MTR_6g037690 37.226 137 80 3 1 132 1 136 7.81e-19 88.2
MS.gene87550.t1 MTR_5g071470 26.842 380 231 15 233 593 581 932 7.84e-19 91.3
MS.gene87550.t1 MTR_5g071470 32.558 129 53 4 133 230 330 455 4.61e-11 66.6
MS.gene87550.t1 MTR_8g038590 26.400 375 207 15 185 514 552 902 1.24e-18 90.9
MS.gene87550.t1 MTR_4g019360 27.687 307 176 12 235 504 503 800 1.36e-18 90.9
MS.gene87550.t1 MTR_1g045960 27.419 310 180 12 231 504 547 847 2.13e-18 90.1
MS.gene87550.t1 MTR_7g021000 31.390 223 127 7 231 442 597 804 2.17e-18 89.7
MS.gene87550.t1 MTR_7g491180 35.036 137 83 3 1 132 1 136 2.70e-18 89.7
MS.gene87550.t1 MTR_7g091190 35.036 137 83 3 1 132 1 136 2.70e-18 89.7
MS.gene87550.t1 MTR_5g071670 25.995 377 242 13 233 595 574 927 2.76e-18 89.7
MS.gene87550.t1 MTR_7g021000 31.390 223 127 7 231 442 597 804 3.07e-18 89.7
MS.gene87550.t1 MTR_3g018980 30.233 301 158 15 231 510 602 871 4.04e-18 89.0
MS.gene87550.t1 MTR_3g014080 29.242 277 151 9 233 498 610 852 5.22e-18 89.0
MS.gene87550.t1 MTR_5g071310 26.954 371 232 15 233 584 548 898 5.30e-18 89.0
MS.gene87550.t1 MTR_3g018980 30.233 301 158 15 231 510 602 871 5.96e-18 88.6
MS.gene87550.t1 MTR_5g072140 25.255 392 246 13 233 593 541 916 6.25e-18 88.6
MS.gene87550.t1 MTR_3g014080 29.242 277 151 9 233 498 610 852 6.50e-18 88.6
MS.gene87550.t1 MTR_3g011620 26.630 368 228 15 239 577 613 967 7.18e-18 88.6
MS.gene87550.t1 MTR_3g027420 28.389 391 222 19 231 583 590 960 7.59e-18 88.2
MS.gene87550.t1 MTR_0511s0020 31.646 237 139 8 252 472 579 808 8.62e-18 88.2
MS.gene87550.t1 MTR_6g046930 26.667 405 239 14 233 602 571 952 8.65e-18 88.2
MS.gene87550.t1 MTR_0230s0010 28.906 256 159 8 233 472 519 767 9.43e-18 87.8
MS.gene87550.t1 MTR_4g022940 72.549 51 14 0 1 51 1 51 1.06e-17 78.6
MS.gene87550.t1 MTR_6g081940 25.945 397 199 16 62 410 9 358 1.15e-17 85.5
MS.gene87550.t1 MTR_0137s0070 29.242 277 151 9 233 498 28 270 1.35e-17 87.0
MS.gene87550.t1 MTR_6g046130 28.205 351 207 12 233 562 572 898 1.45e-17 87.4
MS.gene87550.t1 MTR_5g037590 29.864 221 114 8 231 417 537 750 1.71e-17 87.4
MS.gene87550.t1 MTR_0137s0070 29.242 277 151 9 233 498 28 270 1.71e-17 86.7
MS.gene87550.t1 MTR_0603s0010 28.296 311 178 14 231 504 637 939 2.05e-17 87.0
MS.gene87550.t1 MTR_5g035530 29.936 314 162 15 232 508 451 743 2.32e-17 86.7
MS.gene87550.t1 MTR_1g022380 26.480 321 209 10 233 540 576 882 4.23e-17 85.9
MS.gene87550.t1 MTR_1g037610 30.568 229 113 9 231 417 579 803 4.89e-17 85.9
MS.gene87550.t1 MTR_5g071570 24.515 412 267 16 167 564 533 914 5.09e-17 85.9
MS.gene87550.t1 MTR_5g071800 28.669 293 174 11 233 508 581 855 6.37e-17 85.5
MS.gene87550.t1 MTR_5g071800 32.558 129 53 4 133 230 330 455 6.68e-11 65.9
MS.gene87550.t1 MTR_3g014360 30.964 197 115 7 233 417 589 776 7.11e-17 85.5
MS.gene87550.t1 MTR_5g037460 27.688 372 213 17 229 578 449 786 7.66e-17 84.7
MS.gene87550.t1 MTR_3g035940 26.608 342 190 13 207 504 555 879 8.79e-17 85.1
MS.gene87550.t1 MTR_7g078300 37.405 131 76 3 1 126 1 130 9.07e-17 84.7
MS.gene87550.t1 MTR_0002s0110 26.608 342 190 13 207 504 555 879 9.18e-17 85.1
MS.gene87550.t1 MTR_5g037450 28.053 303 164 11 231 508 594 867 9.21e-17 84.7
MS.gene87550.t1 MTR_0267s0070 30.357 224 116 8 231 417 584 804 1.11e-16 84.7
MS.gene87550.t1 MTR_5g035480 27.005 374 216 15 231 590 572 902 1.26e-16 84.3
MS.gene87550.t1 MTR_5g035480 26.877 253 123 9 132 327 338 585 1.85e-11 67.8
MS.gene87550.t1 MTR_7g078640 37.405 131 76 3 1 126 1 130 1.26e-16 84.3
MS.gene87550.t1 MTR_3g035480 26.608 342 190 13 207 504 555 879 1.39e-16 84.3
MS.gene87550.t1 MTR_3g022790 25.556 360 225 14 231 571 596 931 1.56e-16 84.3
MS.gene87550.t1 MTR_3g014320 31.472 197 114 7 233 417 604 791 1.80e-16 84.0
MS.gene87550.t1 MTR_3g032200 30.180 222 113 8 231 417 579 793 1.86e-16 84.0
MS.gene87550.t1 MTR_3g020620 26.619 278 184 9 239 504 757 1026 2.12e-16 83.6
MS.gene87550.t1 MTR_3g026660 26.235 324 212 10 231 540 628 938 2.14e-16 83.6
MS.gene87550.t1 MTR_0002s0120 26.608 342 190 13 207 504 338 662 2.16e-16 83.6
MS.gene87550.t1 MTR_3g023030 28.387 310 163 13 231 510 568 848 2.24e-16 83.6
MS.gene87550.t1 MTR_0256s0050 25.956 366 233 10 233 571 543 897 2.34e-16 83.6
MS.gene87550.t1 MTR_3g023030 28.387 310 163 13 231 510 602 882 2.54e-16 83.6
MS.gene87550.t1 MTR_7g091570 32.847 137 86 3 1 132 1 136 2.62e-16 80.1
MS.gene87550.t1 MTR_3g026660 26.398 322 210 10 231 538 571 879 2.71e-16 83.2
MS.gene87550.t1 MTR_8g036195 29.630 297 163 11 200 472 532 806 2.85e-16 83.2
MS.gene87550.t1 MTR_6g047450 25.946 370 229 11 233 571 574 929 4.08e-16 82.8
MS.gene87550.t1 MTR_6g047450 26.118 425 202 16 248 570 566 980 8.18e-13 72.0
MS.gene87550.t1 MTR_7g091110 32.847 137 86 3 1 132 1 136 4.32e-16 82.8
MS.gene87550.t1 MTR_3g023320 28.276 290 176 11 200 472 550 824 5.69e-16 82.4
MS.gene87550.t1 MTR_3g024460 31.373 204 120 7 227 418 201 396 6.66e-16 81.6
MS.gene87550.t1 MTR_7g091550 32.117 137 87 3 1 132 3 138 7.03e-16 82.0
MS.gene87550.t1 MTR_4g055630 25.758 396 243 14 233 593 584 963 7.55e-16 82.0
MS.gene87550.t1 MTR_4g055630 34.884 129 51 4 133 230 330 456 1.14e-11 68.6
MS.gene87550.t1 MTR_7g091140 33.577 137 85 3 1 132 1 136 8.06e-16 82.0
MS.gene87550.t1 MTR_7g091140 30.890 191 90 6 139 299 1050 1228 2.86e-15 80.1
MS.gene87550.t1 MTR_6g046570 26.632 383 230 14 233 596 580 930 9.17e-16 81.6
MS.gene87550.t1 MTR_3g032800 29.730 222 114 8 231 417 576 790 9.88e-16 81.6
MS.gene87550.t1 MTR_0137s0010 30.964 197 117 8 233 417 149 338 1.14e-15 80.9
MS.gene87550.t1 MTR_3g014040 30.964 197 117 8 233 417 595 784 1.53e-15 80.9
MS.gene87550.t1 MTR_1g078490 38.060 134 74 4 1 126 1 133 1.61e-15 80.9
MS.gene87550.t1 MTR_3g036050 30.317 221 113 8 231 417 188 401 1.67e-15 80.9
MS.gene87550.t1 MTR_8g010440 24.744 489 275 16 147 549 348 829 1.84e-15 80.5
MS.gene87550.t1 MTR_7g491190 30.657 137 89 3 1 132 1 136 2.42e-15 80.1
MS.gene87550.t1 MTR_7g091200 30.657 137 89 3 1 132 1 136 2.66e-15 80.1
MS.gene87550.t1 MTR_3g014510 30.102 196 120 6 233 417 605 794 2.67e-15 80.1
MS.gene87550.t1 MTR_0425s0020 26.027 365 217 15 231 571 612 947 3.17e-15 80.1
MS.gene87550.t1 MTR_3g033080 26.374 364 194 15 207 508 557 908 3.24e-15 79.7
MS.gene87550.t1 MTR_2g039090 28.322 286 180 11 233 504 593 867 3.38e-15 79.7
MS.gene87550.t1 MTR_0133s0020 27.715 267 149 11 233 472 581 830 4.65e-15 79.3
MS.gene87550.t1 MTR_0002s0090 25.984 381 213 14 231 553 577 946 5.04e-15 79.3
MS.gene87550.t1 MTR_3g035500 25.984 381 213 14 231 553 577 946 5.04e-15 79.3
MS.gene87550.t1 MTR_0133s0030 25.405 370 228 11 233 571 573 925 6.06e-15 79.0
MS.gene87550.t1 MTR_8g011850 24.182 550 314 21 54 508 1297 1838 6.27e-15 79.3
MS.gene87550.t1 MTR_4g119140 35.714 140 72 4 1 139 1 123 7.49e-15 78.6
MS.gene87550.t1 MTR_0005s0200 30.000 220 114 8 231 417 593 805 8.75e-15 78.6
MS.gene87550.t1 MTR_3g030980 30.317 221 114 9 231 417 576 790 1.04e-14 78.2
MS.gene87550.t1 MTR_8g038570 26.332 319 205 12 200 504 588 890 1.19e-14 78.2
MS.gene87550.t1 MTR_3g030960 29.730 222 114 9 231 417 576 790 1.38e-14 77.8
MS.gene87550.t1 MTR_8g027540 36.719 128 73 3 1 122 1 126 1.52e-14 77.8
MS.gene87550.t1 MTR_8g027540 23.454 469 267 17 147 531 350 810 2.38e-12 70.5
MS.gene87550.t1 MTR_3g086070 26.948 308 187 10 185 472 532 821 1.65e-14 77.8
MS.gene87550.t1 MTR_3g071130 24.204 471 220 16 231 575 561 1020 1.66e-14 77.8
MS.gene87550.t1 MTR_4g094540 36.364 132 77 3 2 129 5 133 1.78e-14 77.4
MS.gene87550.t1 MTR_3g014390 24.189 339 219 11 233 549 602 924 1.88e-14 77.4
MS.gene87550.t1 MTR_3g032500 29.279 222 115 8 231 417 580 794 2.08e-14 77.4
MS.gene87550.t1 MTR_5g039570 29.129 333 167 17 133 455 305 578 2.13e-14 76.6
MS.gene87550.t1 MTR_8g011170 31.606 193 107 7 1 174 1 187 3.69e-14 76.3
MS.gene87550.t1 MTR_3g070590 25.000 444 208 15 231 575 561 978 3.98e-14 76.3
MS.gene87550.t1 MTR_3g435720 26.126 333 191 14 231 519 576 897 4.41e-14 76.3
MS.gene87550.t1 MTR_3g034460 26.852 324 178 14 232 510 561 870 4.70e-14 76.3
MS.gene87550.t1 MTR_3g071070 29.412 221 114 7 231 417 356 568 6.42e-14 75.5
MS.gene87550.t1 MTR_3g032760 27.431 288 157 11 231 474 576 855 9.73e-14 75.1
MS.gene87550.t1 MTR_3g033380 28.959 221 117 8 231 417 580 794 1.04e-13 75.1
MS.gene87550.t1 MTR_5g072250 28.374 289 181 10 233 508 579 854 1.08e-13 74.7
MS.gene87550.t1 MTR_1g047800 27.517 298 193 9 226 506 586 877 1.25e-13 74.7
MS.gene87550.t1 MTR_2g014840 25.236 424 224 14 231 571 572 985 1.64e-13 74.3
MS.gene87550.t1 MTR_2g063777 30.180 222 113 9 231 417 573 787 1.66e-13 74.3
MS.gene87550.t1 MTR_3g035960 29.730 222 114 9 231 417 575 789 2.01e-13 74.3
MS.gene87550.t1 MTR_5g071220 29.452 292 168 13 233 504 581 854 2.43e-13 73.9
MS.gene87550.t1 MTR_5g071220 34.375 128 51 4 133 229 330 455 3.64e-11 67.0
MS.gene87550.t1 MTR_5g070470 27.368 285 182 8 233 504 582 854 3.23e-13 73.6
MS.gene87550.t1 MTR_5g070470 35.659 129 50 5 133 230 330 456 5.73e-11 66.2
MS.gene87550.t1 MTR_5g071220 29.452 292 168 13 233 504 581 854 3.41e-13 73.6
MS.gene87550.t1 MTR_5g071220 34.375 128 51 4 133 229 330 455 3.50e-11 67.0
MS.gene87550.t1 MTR_8g106550 27.303 304 158 13 209 474 492 770 3.46e-13 73.6
MS.gene87550.t1 MTR_3g022600 26.846 298 183 12 231 510 612 892 4.09e-13 73.2
MS.gene87550.t1 MTR_8g445980 36.800 125 74 2 11 131 13 136 4.53e-13 72.8
MS.gene87550.t1 MTR_3g031940 28.829 222 116 8 231 417 579 793 4.99e-13 72.8
MS.gene87550.t1 MTR_3g022920 27.797 295 184 10 231 510 579 859 5.07e-13 72.8
MS.gene87550.t1 MTR_3g018930 27.879 330 177 16 231 522 604 910 5.42e-13 72.8
MS.gene87550.t1 MTR_3g435220 25.161 310 189 12 231 504 535 837 6.91e-13 72.4
MS.gene87550.t1 MTR_6g046440 26.648 349 206 12 256 571 540 871 7.28e-13 72.4
MS.gene87550.t1 MTR_4g050410 28.959 221 115 9 231 416 574 787 8.43e-13 72.0
MS.gene87550.t1 MTR_3g032110 30.288 208 104 7 244 417 638 838 8.91e-13 72.0
MS.gene87550.t1 MTR_3g034380 28.829 222 116 9 231 417 575 789 9.23e-13 72.0
MS.gene87550.t1 MTR_3g033240 24.402 418 210 17 231 550 579 988 9.27e-13 72.0
MS.gene87550.t1 MTR_3g021170 27.554 323 202 11 231 536 589 896 9.78e-13 72.0
MS.gene87550.t1 MTR_3g032340 31.250 208 102 8 244 417 641 841 1.16e-12 71.6
MS.gene87550.t1 MTR_5g071823 25.796 314 194 11 246 540 593 886 1.28e-12 71.6
MS.gene87550.t1 MTR_5g071850 25.796 314 194 11 246 540 593 886 1.28e-12 71.6
MS.gene87550.t1 MTR_3g435740 25.874 286 162 10 231 474 620 897 1.31e-12 71.6
MS.gene87550.t1 MTR_1g047910 29.197 137 91 3 1 132 1 136 1.39e-12 71.2
MS.gene87550.t1 MTR_3g022230 27.397 292 178 12 231 510 602 871 1.51e-12 71.6
MS.gene87550.t1 MTR_8g011550 32.857 140 84 5 1 133 1 137 1.53e-12 71.2
MS.gene87550.t1 MTR_6g452490 32.374 139 85 4 1 133 1 136 2.05e-12 70.9
MS.gene87550.t1 MTR_3g033110 29.500 200 121 8 232 417 576 769 2.41e-12 70.9
MS.gene87550.t1 MTR_3g035810 26.979 341 208 12 231 553 570 887 2.77e-12 70.5
MS.gene87550.t1 MTR_3g015260 26.727 333 199 15 231 544 603 909 2.79e-12 70.5
MS.gene87550.t1 MTR_3g015260 26.727 333 199 15 231 544 603 909 3.18e-12 70.1
MS.gene87550.t1 MTR_2g038760 28.041 296 182 12 226 504 612 893 3.44e-12 70.1
MS.gene87550.t1 MTR_2g038900 28.041 296 182 12 226 504 601 882 4.40e-12 69.7
MS.gene87550.t1 MTR_3g021380 26.205 332 213 11 231 544 576 893 4.58e-12 69.7
MS.gene87550.t1 MTR_3g021340 27.491 291 182 9 231 510 588 860 4.96e-12 69.7
MS.gene87550.t1 MTR_3g032150 28.829 222 116 8 231 417 574 788 5.09e-12 69.7
MS.gene87550.t1 MTR_5g071780 24.611 321 214 9 233 540 580 885 5.37e-12 69.3
MS.gene87550.t1 MTR_1g023600 27.132 258 174 7 272 527 626 871 5.56e-12 69.3
MS.gene87550.t1 MTR_3g025360 27.458 295 185 10 231 510 615 895 5.78e-12 69.3
MS.gene87550.t1 MTR_5g035230 30.256 195 91 7 78 230 248 439 6.50e-12 68.6
MS.gene87550.t1 MTR_3g027470 25.773 291 168 11 231 510 508 761 6.52e-12 69.3
MS.gene87550.t1 MTR_6g084550 29.798 198 121 7 232 418 586 776 6.61e-12 69.3
MS.gene87550.t1 MTR_3g032370 28.829 222 116 8 231 417 574 788 6.89e-12 69.3
MS.gene87550.t1 MTR_3g028040 25.159 314 189 11 232 508 601 905 7.38e-12 69.3
MS.gene87550.t1 MTR_3g022870 27.063 303 176 11 231 510 586 866 7.44e-12 68.9
MS.gene87550.t1 MTR_3g022940 28.438 320 173 14 231 510 563 866 7.76e-12 68.9
MS.gene87550.t1 MTR_5g037500 27.451 255 164 8 231 471 522 769 7.98e-12 68.9
MS.gene87550.t1 MTR_3g020890 25.954 262 150 9 194 417 527 782 9.54e-12 68.9
MS.gene87550.t1 MTR_5g040770 31.677 161 77 4 132 261 99 257 9.65e-12 68.6
MS.gene87550.t1 MTR_3g435210 25.510 196 113 5 233 417 408 581 1.01e-11 68.6
MS.gene87550.t1 MTR_3g034430 25.723 346 222 15 185 510 556 886 1.16e-11 68.6
MS.gene87550.t1 MTR_0065s0100 32.857 140 84 5 1 133 1 137 1.29e-11 68.2
MS.gene87550.t1 MTR_3g033860 26.829 287 158 12 232 474 577 855 1.37e-11 68.2
MS.gene87550.t1 MTR_3g022130 27.249 389 199 17 231 595 577 905 1.77e-11 67.8
MS.gene87550.t1 MTR_7g013560 34.586 133 77 5 1 126 1 130 1.92e-11 67.8
MS.gene87550.t1 MTR_3g021100 26.113 337 207 11 231 544 594 911 2.32e-11 67.4
MS.gene87550.t1 MTR_1g008240 25.549 364 208 14 231 547 561 908 2.36e-11 67.4
MS.gene87550.t1 MTR_1643s0010 30.986 142 87 4 285 424 1 133 2.76e-11 65.5
MS.gene87550.t1 MTR_3g022870 26.531 294 176 11 231 510 563 830 2.96e-11 67.0
MS.gene87550.t1 MTR_8g011300 30.935 139 87 4 1 133 1 136 3.55e-11 67.0
MS.gene87550.t1 MTR_8g011180 33.858 127 77 4 1 122 1 125 4.48e-11 66.6
MS.gene87550.t1 MTR_3g032960 28.378 222 117 9 231 417 576 790 5.96e-11 66.2
MS.gene87550.t1 MTR_3g018930 30.645 186 101 7 231 399 604 778 8.35e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87550.t1 AT3G14470 28.205 234 146 8 200 417 573 800 2.96e-14 77.0
MS.gene87550.t1 AT3G14470 28.205 234 146 8 200 417 573 800 2.96e-14 77.0

Find 105 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAAATTTGTATATAAAT+TGG 0.180338 4.1:-75403792 None:intergenic
GCTAAGCATATGAATTTAAT+AGG 0.195988 4.1:+75403605 MS.gene87550:CDS
AAACTCTCTTACCAACATTA+AGG 0.202818 4.1:-75401880 None:intergenic
GGCCAATTTATATACAAATT+TGG 0.221374 4.1:+75403790 MS.gene87550:CDS
TGACCTTTCTTGTTGTGATA+TGG 0.261109 4.1:+75403262 MS.gene87550:CDS
TGAGATCAAGGCTGTGGTTT+TGG 0.264090 4.1:+75401613 MS.gene87550:CDS
TACTTCTAAGGCCTTGATAT+TGG 0.271153 4.1:-75403735 None:intergenic
CAAAATGGTTCAGAAAATTA+AGG 0.272920 4.1:+75401835 MS.gene87550:CDS
GAGAGATTTCAAATTGAGTA+TGG 0.279594 4.1:-75404209 None:intergenic
ATATACAAATTTGGTTGAAT+TGG 0.282138 4.1:+75403799 MS.gene87550:CDS
CCAGCCAGAGTTGAACTTGA+TGG 0.301091 4.1:-75401664 None:intergenic
TTCCACAACACACATATATC+AGG 0.312066 4.1:+75404104 MS.gene87550:CDS
AGGGGACAACTCGAGATAAA+TGG 0.322086 4.1:+75403551 MS.gene87550:CDS
AATACATGTTTAGAAGATAT+TGG 0.326910 4.1:+75402801 MS.gene87550:CDS
ACTTCTATGCCAATTGGAAT+AGG 0.330467 4.1:+75403431 MS.gene87550:CDS
ACCGAATCCACTTACTTCTA+AGG 0.331841 4.1:-75403747 None:intergenic
AACTCTCTTACCAACATTAA+GGG 0.334032 4.1:-75401879 None:intergenic
TTCGTCGATTAACATTGAAT+TGG 0.343938 4.1:+75403639 MS.gene87550:CDS
TTCATATGCTTAGCTTCTGT+TGG 0.369235 4.1:-75403596 None:intergenic
TTCATCCTTCCAATACTAGA+TGG 0.376439 4.1:-75403224 None:intergenic
AATGTTGACCAATCCTTCTT+CGG 0.377853 4.1:-75402576 None:intergenic
TTCCTCATTCTCTAGTTCTC+TGG 0.387962 4.1:-75402466 None:intergenic
AAACAACATTGATTCGACTT+TGG 0.388310 4.1:+75402745 MS.gene87550:CDS
GACTTAACTTCTATGCCAAT+TGG 0.398500 4.1:+75403425 MS.gene87550:CDS
GTCATCTTTCCTATTCCAAT+TGG 0.402112 4.1:-75403440 None:intergenic
TGAGAAGCTGATCGGGAAGC+TGG 0.404413 4.1:+75401526 MS.gene87550:CDS
AGAACTAGAGAATGAGGAAT+TGG 0.407387 4.1:+75402470 MS.gene87550:CDS
TTTGGATGCAGAGGAGCAGC+AGG 0.416119 4.1:+75401631 MS.gene87550:CDS
CAAGCTTCCAATGCTTCTAA+TGG 0.421152 4.1:-75402541 None:intergenic
TTGGAAGGATGAAACATCTA+AGG 0.424468 4.1:+75403234 MS.gene87550:CDS
ATGGTTGTTACAGCATGAAA+TGG 0.439045 4.1:+75404314 MS.gene87550:CDS
CACCTGTCGCCTCAAGTCTT+CGG 0.441003 4.1:-75401741 None:intergenic
GAGTTGAACTTGATGGTTGT+TGG 0.441177 4.1:-75401657 None:intergenic
TAGGAGGATTAAATAATTTG+AGG 0.441704 4.1:+75403531 MS.gene87550:CDS
GCCTTAGAAGTAAGTGGATT+CGG 0.444153 4.1:+75403746 MS.gene87550:CDS
AATGAGGAATTGGTGTCAAT+TGG 0.449547 4.1:+75402480 MS.gene87550:CDS
TGTTGAATACCAATACTTTG+AGG 0.451911 4.1:-75404351 None:intergenic
AAATCTAAAACAAGTGAGAT+AGG 0.455836 4.1:+75403512 MS.gene87550:CDS
ACATGATTGAGAAGCTGATC+GGG 0.460820 4.1:+75401519 MS.gene87550:CDS
CTATCTCAAGAGACTCTAGT+TGG 0.479196 4.1:-75404183 None:intergenic
AGGAGGATTAAATAATTTGA+GGG 0.480334 4.1:+75403532 MS.gene87550:CDS
TGGTGTGACATTGTCTAGTT+CGG 0.483486 4.1:+75403769 MS.gene87550:CDS
ATATTGTAATCTTGTGCAAT+CGG 0.485342 4.1:-75403828 None:intergenic
CTAAGCATATGAATTTAATA+GGG 0.485872 4.1:+75403606 MS.gene87550:CDS
TTCTTGTTGTGATATGGTTG+AGG 0.486169 4.1:+75403268 MS.gene87550:CDS
CCATCAAGTTCAACTCTGGC+TGG 0.489227 4.1:+75401664 MS.gene87550:CDS
CCGCTCGCCATTAGAAGCAT+TGG 0.492262 4.1:+75402534 MS.gene87550:CDS
GATGTATTCCATGCCGAAGA+AGG 0.498061 4.1:+75402563 MS.gene87550:CDS
TTCCAGAGAACTAGAGAATG+AGG 0.513436 4.1:+75402464 MS.gene87550:CDS
GGACAATATGCTTGAGATCA+AGG 0.514858 4.1:+75401601 MS.gene87550:CDS
TATCATTAACAATGTACTCT+AGG 0.516181 4.1:-75403904 None:intergenic
GTTCAGTGGTTGTTGAAAGC+TGG 0.516862 4.1:+75401549 MS.gene87550:CDS
ATCAAGGCCTTAGAAGTAAG+TGG 0.518669 4.1:+75403740 MS.gene87550:CDS
AGTGGAGTCTTTCAACATCT+AGG 0.521039 4.1:+75404232 MS.gene87550:CDS
GGTTAACAAATCTGAAAGGA+TGG 0.521887 4.1:+75403984 MS.gene87550:CDS
ACGAAGATTCCATCTAGTAT+TGG 0.523616 4.1:+75403215 MS.gene87550:CDS
GAGAGATGATCTTCAAAAGC+TGG 0.528192 4.1:+75401577 MS.gene87550:CDS
AGAATTGAAGCCCTTAATGT+TGG 0.530126 4.1:+75401869 MS.gene87550:CDS
CAACCATATCACAACAAGAA+AGG 0.532705 4.1:-75403265 None:intergenic
ATTCCATGCCGAAGAAGGAT+TGG 0.538801 4.1:+75402568 MS.gene87550:CDS
GATCAAACTCCTCGCAATTG+AGG 0.543237 4.1:-75404276 None:intergenic
TATCTCAAGAGACTCTAGTT+GGG 0.543385 4.1:-75404182 None:intergenic
ACTCACGAACCTCAAAGTAT+TGG 0.546905 4.1:+75404342 MS.gene87550:CDS
TGACCAATCCTTCTTCGGCA+TGG 0.549096 4.1:-75402571 None:intergenic
GTAGTGAAGAAGAAATCTCA+AGG 0.551314 4.1:+75404014 MS.gene87550:CDS
ACAACTCGAGATAAATGGCT+TGG 0.551914 4.1:+75403556 MS.gene87550:CDS
GAGAAGCTGATCGGGAAGCT+GGG 0.552714 4.1:+75401527 MS.gene87550:CDS
AACATGATTGAGAAGCTGAT+CGG 0.554548 4.1:+75401518 MS.gene87550:CDS
GTAAGAAAAGAGAAGCTGGT+TGG 0.554632 4.1:-75401813 None:intergenic
TTTGGGTTAACAAATCTGAA+AGG 0.556116 4.1:+75403980 MS.gene87550:CDS
ATCTTGGAGATTTATATAGT+CGG 0.560265 4.1:+75402427 MS.gene87550:intron
GATCGGGAAGCTGGGTTCAG+TGG 0.560922 4.1:+75401535 MS.gene87550:CDS
AGTTCTGCACTCCAATATCA+AGG 0.564748 4.1:+75403724 MS.gene87550:CDS
CACCGAAGACTTGAGGCGAC+AGG 0.573549 4.1:+75401739 MS.gene87550:CDS
ATATGGTTGAGGAGCTCCCA+AGG 0.577062 4.1:+75403279 MS.gene87550:CDS
GATCCGTGCAATGATGAAGA+TGG 0.578357 4.1:+75404295 MS.gene87550:CDS
TATGCTTGAGATCAAGGCTG+TGG 0.581510 4.1:+75401607 MS.gene87550:CDS
ACAACCATCAAGTTCAACTC+TGG 0.584621 4.1:+75401660 MS.gene87550:CDS
AAAGTCATCGAGCAAGTCAT+CGG 0.588785 4.1:-75401714 None:intergenic
GGAATTGGTGTCAATTGGCA+AGG 0.598501 4.1:+75402485 MS.gene87550:CDS
CAACCATCTTCATCATTGCA+CGG 0.601113 4.1:-75404298 None:intergenic
AATCTTCGTTGACTTTGTGT+TGG 0.601944 4.1:-75403201 None:intergenic
ATTCGACTTTGGATTGCACA+AGG 0.604919 4.1:+75402756 MS.gene87550:CDS
ACTTTAACACCGAAGACTTG+AGG 0.604978 4.1:+75401732 MS.gene87550:CDS
TCCCTGATATATGTGTGTTG+TGG 0.605907 4.1:-75404106 None:intergenic
AGATTCCATCTAGTATTGGA+AGG 0.612435 4.1:+75403219 MS.gene87550:CDS
TAGTGAAGAAGAAATCTCAA+GGG 0.614334 4.1:+75404015 MS.gene87550:CDS
TCCACAACACACATATATCA+GGG 0.616043 4.1:+75404105 MS.gene87550:CDS
TTAACAATGTACTCTAGGCA+TGG 0.616598 4.1:-75403899 None:intergenic
AGATGATCTTCAAAAGCTGG+TGG 0.618008 4.1:+75401580 MS.gene87550:CDS
TCTAAAACAAGTGAGATAGG+AGG 0.619550 4.1:+75403515 MS.gene87550:CDS
CAGGGAAGTAATTCTTAGAG+AGG 0.621436 4.1:+75404123 MS.gene87550:CDS
GGAGGATTAAATAATTTGAG+GGG 0.632971 4.1:+75403533 MS.gene87550:CDS
GGTGATGACCAGTAACAAGA+AGG 0.642514 4.1:+75401760 MS.gene87550:CDS
GGCATGGCAAATTAAACATG+CGG 0.646828 4.1:-75403883 None:intergenic
CTCAATTTGAAATCTCTCAG+TGG 0.656330 4.1:+75404214 MS.gene87550:CDS
TTCGACTTTGGATTGCACAA+GGG 0.656489 4.1:+75402757 MS.gene87550:CDS
TTGGATGCAGAGGAGCAGCA+GGG 0.661221 4.1:+75401632 MS.gene87550:CDS
TAAATGGCTTGGAACATCTG+AGG 0.662980 4.1:+75403567 MS.gene87550:CDS
CTTATGAAAATTGATGAACA+AGG 0.663847 4.1:+75402612 MS.gene87550:CDS
ATGGCAAATTAAACATGCGG+AGG 0.679889 4.1:-75403880 None:intergenic
AGTGAAGAAGAAATCTCAAG+GGG 0.680361 4.1:+75404016 MS.gene87550:CDS
CCAATGCTTCTAATGGCGAG+CGG 0.681996 4.1:-75402534 None:intergenic
TTAGAAGTAAGTGGATTCGG+TGG 0.692376 4.1:+75403749 MS.gene87550:CDS
ATTGTGTATCCTCAATTGCG+AGG 0.701152 4.1:+75404267 MS.gene87550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTAGTTAATAAAAA+AGG + chr4.1:75402960-75402979 MS.gene87550:intron 10.0%
!!! TTAAAGATATATTTCTTTTT+GGG + chr4.1:75403963-75403982 MS.gene87550:CDS 10.0%
!! AACCAAATTTGTATATAAAT+TGG - chr4.1:75403795-75403814 None:intergenic 15.0%
!! TATAACTGAATTAATTAACT+TGG + chr4.1:75403304-75403323 MS.gene87550:intron 15.0%
!!! CTTAAAGATATATTTCTTTT+TGG + chr4.1:75403962-75403981 MS.gene87550:CDS 15.0%
!! AAATTGTGAAAAAATGTTCA+GGG + chr4.1:75402508-75402527 MS.gene87550:CDS 20.0%
!! AATACATGTTTAGAAGATAT+TGG + chr4.1:75402801-75402820 MS.gene87550:CDS 20.0%
!! AGACTTTCACTATATAATAT+TGG - chr4.1:75403116-75403135 None:intergenic 20.0%
!! ATATACAAATTTGGTTGAAT+TGG + chr4.1:75403799-75403818 MS.gene87550:CDS 20.0%
!! ATCTTCTATCTTCAATTTAA+AGG + chr4.1:75402388-75402407 MS.gene87550:intron 20.0%
!! ATTATATAGTGAAAGTCTAT+TGG + chr4.1:75403118-75403137 MS.gene87550:intron 20.0%
!! CTAAGCATATGAATTTAATA+GGG + chr4.1:75403606-75403625 MS.gene87550:CDS 20.0%
!! TCTTCTATCTTCAATTTAAA+GGG + chr4.1:75402389-75402408 MS.gene87550:intron 20.0%
!! TTCTCAATTCTTACAATTTA+AGG + chr4.1:75403060-75403079 MS.gene87550:intron 20.0%
!! TTTAAATTGAAGATAGAAGA+TGG - chr4.1:75402389-75402408 None:intergenic 20.0%
!!! AACATTTAGAGTTGAAAAAA+TGG + chr4.1:75402140-75402159 MS.gene87550:intron 20.0%
!!! ACATTTAGAGTTGAAAAAAT+GGG + chr4.1:75402141-75402160 MS.gene87550:intron 20.0%
!!! GTTATTTCTATAATTGGAAT+CGG + chr4.1:75402061-75402080 MS.gene87550:intron 20.0%
!!! GTTTCAGTTATTTCTATAAT+TGG + chr4.1:75402055-75402074 MS.gene87550:intron 20.0%
!!! TTTGGAATTAAATAGTCTTT+TGG - chr4.1:75402726-75402745 None:intergenic 20.0%
! AATTGTGAAAAAATGTTCAG+GGG + chr4.1:75402509-75402528 MS.gene87550:CDS 25.0%
! AGGAGGATTAAATAATTTGA+GGG + chr4.1:75403532-75403551 MS.gene87550:CDS 25.0%
! ATATTGTAATCTTGTGCAAT+CGG - chr4.1:75403831-75403850 None:intergenic 25.0%
! ATCTTGGAGATTTATATAGT+CGG + chr4.1:75402427-75402446 MS.gene87550:intron 25.0%
! ATTAATTCAGTTATAGACCT+TGG - chr4.1:75403299-75403318 None:intergenic 25.0%
! CAAAATGGTTCAGAAAATTA+AGG + chr4.1:75401835-75401854 MS.gene87550:CDS 25.0%
! CTTATGAAAATTGATGAACA+AGG + chr4.1:75402612-75402631 MS.gene87550:CDS 25.0%
! GAAATTGTGAAAAAATGTTC+AGG + chr4.1:75402507-75402526 MS.gene87550:CDS 25.0%
! GCTAAGCATATGAATTTAAT+AGG + chr4.1:75403605-75403624 MS.gene87550:CDS 25.0%
! GGCCAATTTATATACAAATT+TGG + chr4.1:75403790-75403809 MS.gene87550:CDS 25.0%
! TAGGAGGATTAAATAATTTG+AGG + chr4.1:75403531-75403550 MS.gene87550:CDS 25.0%
! TATCATTAACAATGTACTCT+AGG - chr4.1:75403907-75403926 None:intergenic 25.0%
! TTAATTCAGTTATAGACCTT+GGG - chr4.1:75403298-75403317 None:intergenic 25.0%
!! AAATCTAAAACAAGTGAGAT+AGG + chr4.1:75403512-75403531 MS.gene87550:CDS 25.0%
!!! AAGCACTTTTTCAAATGAAA+TGG - chr4.1:75402684-75402703 None:intergenic 25.0%
!!! TCTGATGATTTTGATGTAAA+AGG + chr4.1:75402172-75402191 MS.gene87550:intron 25.0%
AAACTCTCTTACCAACATTA+AGG - chr4.1:75401883-75401902 None:intergenic 30.0%
AACTCTCTTACCAACATTAA+GGG - chr4.1:75401882-75401901 None:intergenic 30.0%
AGAAGTTATTGGAAGAGATA+AGG + chr4.1:75401976-75401995 MS.gene87550:intron 30.0%
ATTTCTATAATTGGAATCGG+AGG + chr4.1:75402064-75402083 MS.gene87550:intron 30.0%
CATTTCTATTACCACTACAT+TGG + chr4.1:75403084-75403103 MS.gene87550:intron 30.0%
GAGAGATTTCAAATTGAGTA+TGG - chr4.1:75404212-75404231 None:intergenic 30.0%
GATAAGATATTTGCTTGTCT+TGG + chr4.1:75402276-75402295 MS.gene87550:intron 30.0%
GGAGGATTAAATAATTTGAG+GGG + chr4.1:75403533-75403552 MS.gene87550:CDS 30.0%
GTCGTGAATGAAAGAATATT+CGG - chr4.1:75402877-75402896 None:intergenic 30.0%
TAAGAATTGAGAAGAGAAGT+TGG - chr4.1:75403053-75403072 None:intergenic 30.0%
TAGTGAAGAAGAAATCTCAA+GGG + chr4.1:75404015-75404034 MS.gene87550:CDS 30.0%
TGTTGAATACCAATACTTTG+AGG - chr4.1:75404354-75404373 None:intergenic 30.0%
! GCTTCTCTTTTCTTACAAAA+TGG + chr4.1:75401820-75401839 MS.gene87550:CDS 30.0%
! TATTGGTGATAAGTACTTCA+TGG + chr4.1:75402818-75402837 MS.gene87550:intron 30.0%
! TTCGTCGATTAACATTGAAT+TGG + chr4.1:75403639-75403658 MS.gene87550:CDS 30.0%
! TTTGGGTTAACAAATCTGAA+AGG + chr4.1:75403980-75403999 MS.gene87550:CDS 30.0%
! TTTTGTAAGAAAAGAGAAGC+TGG - chr4.1:75401820-75401839 None:intergenic 30.0%
!! AAACAACATTGATTCGACTT+TGG + chr4.1:75402745-75402764 MS.gene87550:CDS 30.0%
!! ATAGAGTTGTTGTTTAACAC+CGG + chr4.1:75402013-75402032 MS.gene87550:intron 30.0%
!!! AGTCGAATCAATGTTGTTTT+TGG - chr4.1:75402744-75402763 None:intergenic 30.0%
!!! TTATCCCTTCAACTTTTTCA+CGG - chr4.1:75402261-75402280 None:intergenic 30.0%
AAACTCCGTGAAAAAGTTGA+AGG + chr4.1:75402253-75402272 MS.gene87550:intron 35.0%
AACATGATTGAGAAGCTGAT+CGG + chr4.1:75401518-75401537 MS.gene87550:CDS 35.0%
AACTCCGTGAAAAAGTTGAA+GGG + chr4.1:75402254-75402273 MS.gene87550:intron 35.0%
AATGTTGACCAATCCTTCTT+CGG - chr4.1:75402579-75402598 None:intergenic 35.0%
ACCAACTTCCAAAGATCTTT+GGG - chr4.1:75403371-75403390 None:intergenic 35.0%
ACGAAGATTCCATCTAGTAT+TGG + chr4.1:75403215-75403234 MS.gene87550:CDS 35.0%
ACTTCTATGCCAATTGGAAT+AGG + chr4.1:75403431-75403450 MS.gene87550:CDS 35.0%
AGAACTAGAGAATGAGGAAT+TGG + chr4.1:75402470-75402489 MS.gene87550:CDS 35.0%
AGAATTGAAGCCCTTAATGT+TGG + chr4.1:75401869-75401888 MS.gene87550:CDS 35.0%
AGTGAAGAAGAAATCTCAAG+GGG + chr4.1:75404016-75404035 MS.gene87550:CDS 35.0%
ATGGTTGTTACAGCATGAAA+TGG + chr4.1:75404314-75404333 MS.gene87550:CDS 35.0%
ATTCTCTTTCACATTGTTGC+CGG - chr4.1:75402035-75402054 None:intergenic 35.0%
CAACCATATCACAACAAGAA+AGG - chr4.1:75403268-75403287 None:intergenic 35.0%
CATGCACAATATCATGCATT+TGG - chr4.1:75402911-75402930 None:intergenic 35.0%
GACTCAATGACAAAGAATCT+TGG + chr4.1:75402411-75402430 MS.gene87550:intron 35.0%
GACTTAACTTCTATGCCAAT+TGG + chr4.1:75403425-75403444 MS.gene87550:CDS 35.0%
GGTTAACAAATCTGAAAGGA+TGG + chr4.1:75403984-75404003 MS.gene87550:CDS 35.0%
GTAGTGAAGAAGAAATCTCA+AGG + chr4.1:75404014-75404033 MS.gene87550:CDS 35.0%
GTCATCTTTCCTATTCCAAT+TGG - chr4.1:75403443-75403462 None:intergenic 35.0%
TACCAACTTCCAAAGATCTT+TGG - chr4.1:75403372-75403391 None:intergenic 35.0%
TATCTCAAGAGACTCTAGTT+GGG - chr4.1:75404185-75404204 None:intergenic 35.0%
TCCACAACACACATATATCA+GGG + chr4.1:75404105-75404124 MS.gene87550:CDS 35.0%
TTAACAATGTACTCTAGGCA+TGG - chr4.1:75403902-75403921 None:intergenic 35.0%
TTCATATGCTTAGCTTCTGT+TGG - chr4.1:75403599-75403618 None:intergenic 35.0%
TTCATCCTTCCAATACTAGA+TGG - chr4.1:75403227-75403246 None:intergenic 35.0%
TTCCACAACACACATATATC+AGG + chr4.1:75404104-75404123 MS.gene87550:CDS 35.0%
TTGGAAGGATGAAACATCTA+AGG + chr4.1:75403234-75403253 MS.gene87550:CDS 35.0%
! AACTCATTCTTTTATTCGCG+AGG + chr4.1:75401952-75401971 MS.gene87550:intron 35.0%
! AGATTCCATCTAGTATTGGA+AGG + chr4.1:75403219-75403238 MS.gene87550:CDS 35.0%
! CTCAATTTGAAATCTCTCAG+TGG + chr4.1:75404214-75404233 MS.gene87550:CDS 35.0%
! TCTAAAACAAGTGAGATAGG+AGG + chr4.1:75403515-75403534 MS.gene87550:CDS 35.0%
! TGACCTTTCTTGTTGTGATA+TGG + chr4.1:75403262-75403281 MS.gene87550:CDS 35.0%
! TTCTTGTTGTGATATGGTTG+AGG + chr4.1:75403268-75403287 MS.gene87550:CDS 35.0%
!! AATCTTCGTTGACTTTGTGT+TGG - chr4.1:75403204-75403223 None:intergenic 35.0%
!! AATGAGGAATTGGTGTCAAT+TGG + chr4.1:75402480-75402499 MS.gene87550:CDS 35.0%
!! CTTTTTAGCCTTCTTGTTAC+TGG - chr4.1:75401771-75401790 None:intergenic 35.0%
!! TACTTCTAAGGCCTTGATAT+TGG - chr4.1:75403738-75403757 None:intergenic 35.0%
!! TTTGGAAGTTGGTAAGTCTT+AGG + chr4.1:75403378-75403397 MS.gene87550:intron 35.0%
!!! TTCAACTTTTTCACGGAGTT+TGG - chr4.1:75402254-75402273 None:intergenic 35.0%
AAAGTCATCGAGCAAGTCAT+CGG - chr4.1:75401717-75401736 None:intergenic 40.0%
ACAACCATCAAGTTCAACTC+TGG + chr4.1:75401660-75401679 MS.gene87550:CDS 40.0%
ACAACTCGAGATAAATGGCT+TGG + chr4.1:75403556-75403575 MS.gene87550:CDS 40.0%
ACATGATTGAGAAGCTGATC+GGG + chr4.1:75401519-75401538 MS.gene87550:CDS 40.0%
ACCGAATCCACTTACTTCTA+AGG - chr4.1:75403750-75403769 None:intergenic 40.0%
ACTCACGAACCTCAAAGTAT+TGG + chr4.1:75404342-75404361 MS.gene87550:CDS 40.0%
ACTTTAACACCGAAGACTTG+AGG + chr4.1:75401732-75401751 MS.gene87550:CDS 40.0%
AGATGATCTTCAAAAGCTGG+TGG + chr4.1:75401580-75401599 MS.gene87550:CDS 40.0%
AGTGGAGTCTTTCAACATCT+AGG + chr4.1:75404232-75404251 MS.gene87550:CDS 40.0%
AGTTCTGCACTCCAATATCA+AGG + chr4.1:75403724-75403743 MS.gene87550:CDS 40.0%
ATAATTGGAATCGGAGGACT+TGG + chr4.1:75402070-75402089 MS.gene87550:intron 40.0%
ATCAAGGCCTTAGAAGTAAG+TGG + chr4.1:75403740-75403759 MS.gene87550:CDS 40.0%
ATGAGGATCGTGATCTTTGA+AGG + chr4.1:75402311-75402330 MS.gene87550:intron 40.0%
ATGGCAAATTAAACATGCGG+AGG - chr4.1:75403883-75403902 None:intergenic 40.0%
ATTCAACGCCAAAAGAGACA+TGG - chr4.1:75403010-75403029 None:intergenic 40.0%
ATTCCATCCTGTCAAGTTCT+AGG + chr4.1:75403156-75403175 MS.gene87550:intron 40.0%
ATTCGACTTTGGATTGCACA+AGG + chr4.1:75402756-75402775 MS.gene87550:CDS 40.0%
ATTCGCGAGGAAGAAGTTAT+TGG + chr4.1:75401965-75401984 MS.gene87550:intron 40.0%
ATTGTGTATCCTCAATTGCG+AGG + chr4.1:75404267-75404286 MS.gene87550:CDS 40.0%
CAACCATCTTCATCATTGCA+CGG - chr4.1:75404301-75404320 None:intergenic 40.0%
CAAGCTTCCAATGCTTCTAA+TGG - chr4.1:75402544-75402563 None:intergenic 40.0%
CAGGGAAGTAATTCTTAGAG+AGG + chr4.1:75404123-75404142 MS.gene87550:CDS 40.0%
CTATCTCAAGAGACTCTAGT+TGG - chr4.1:75404186-75404205 None:intergenic 40.0%
CTTGGATGACAATTGGAATG+AGG + chr4.1:75402294-75402313 MS.gene87550:intron 40.0%
GAGAGATGATCTTCAAAAGC+TGG + chr4.1:75401577-75401596 MS.gene87550:CDS 40.0%
GCATGATATTGTGCATGATC+TGG + chr4.1:75402914-75402933 MS.gene87550:intron 40.0%
GGACAATATGCTTGAGATCA+AGG + chr4.1:75401601-75401620 MS.gene87550:CDS 40.0%
GGCATGGCAAATTAAACATG+CGG - chr4.1:75403886-75403905 None:intergenic 40.0%
GTAAGAAAAGAGAAGCTGGT+TGG - chr4.1:75401816-75401835 None:intergenic 40.0%
TCCCTGATATATGTGTGTTG+TGG - chr4.1:75404109-75404128 None:intergenic 40.0%
TGCTTGTCTTGGATGACAAT+TGG + chr4.1:75402287-75402306 MS.gene87550:intron 40.0%
TGGTGTGACATTGTCTAGTT+CGG + chr4.1:75403769-75403788 MS.gene87550:CDS 40.0%
TTCCAGAGAACTAGAGAATG+AGG + chr4.1:75402464-75402483 MS.gene87550:CDS 40.0%
TTCGACTTTGGATTGCACAA+GGG + chr4.1:75402757-75402776 MS.gene87550:CDS 40.0%
! GAGTTGAACTTGATGGTTGT+TGG - chr4.1:75401660-75401679 None:intergenic 40.0%
! GCCTTAGAAGTAAGTGGATT+CGG + chr4.1:75403746-75403765 MS.gene87550:CDS 40.0%
! GGATTTGTTTGTCGATATGC+TGG - chr4.1:75402986-75403005 None:intergenic 40.0%
! TAAATGGCTTGGAACATCTG+AGG + chr4.1:75403567-75403586 MS.gene87550:CDS 40.0%
! TTAGAAGTAAGTGGATTCGG+TGG + chr4.1:75403749-75403768 MS.gene87550:CDS 40.0%
!! TGTCTCTTTTGGCGTTGAAT+TGG + chr4.1:75403010-75403029 MS.gene87550:intron 40.0%
!! TTCCTCATTCTCTAGTTCTC+TGG - chr4.1:75402469-75402488 None:intergenic 40.0%
AAGAAGTGAGAAGGTTGCCA+AGG + chr4.1:75402355-75402374 MS.gene87550:intron 45.0%
AAGAGAAGTTGGAACTTGCC+AGG - chr4.1:75403042-75403061 None:intergenic 45.0%
AGGGGACAACTCGAGATAAA+TGG + chr4.1:75403551-75403570 MS.gene87550:CDS 45.0%
ATTCCATGCCGAAGAAGGAT+TGG + chr4.1:75402568-75402587 MS.gene87550:CDS 45.0%
ATTGGACTCGTCCAATGTAG+TGG - chr4.1:75403098-75403117 None:intergenic 45.0%
GAAATCGCCTAGAACTTGAC+AGG - chr4.1:75403166-75403185 None:intergenic 45.0%
GAGAGTTGCCCAAAGATCTT+TGG + chr4.1:75403360-75403379 MS.gene87550:intron 45.0%
GATCAAACTCCTCGCAATTG+AGG - chr4.1:75404279-75404298 None:intergenic 45.0%
GATCCGTGCAATGATGAAGA+TGG + chr4.1:75404295-75404314 MS.gene87550:CDS 45.0%
GATGTATTCCATGCCGAAGA+AGG + chr4.1:75402563-75402582 MS.gene87550:CDS 45.0%
GCGCTTGCTCAACTTGTATA+CGG + chr4.1:75402100-75402119 MS.gene87550:intron 45.0%
GCGTTGAATTGGATTCTTCC+TGG + chr4.1:75403021-75403040 MS.gene87550:intron 45.0%
GGTGATGACCAGTAACAAGA+AGG + chr4.1:75401760-75401779 MS.gene87550:CDS 45.0%
GTTCAGTGGTTGTTGAAAGC+TGG + chr4.1:75401549-75401568 MS.gene87550:CDS 45.0%
TATCACCGCAAGAAGTGAGA+AGG + chr4.1:75402346-75402365 MS.gene87550:intron 45.0%
TATGCTTGAGATCAAGGCTG+TGG + chr4.1:75401607-75401626 MS.gene87550:CDS 45.0%
TGTTTCAAAACTCGCTGCTC+AGG - chr4.1:75401926-75401945 None:intergenic 45.0%
! CAAATCCGCCATGTCTCTTT+TGG + chr4.1:75402999-75403018 MS.gene87550:intron 45.0%
! GCCCAAAGATCTTTGGAAGT+TGG + chr4.1:75403367-75403386 MS.gene87550:intron 45.0%
! TGAGATCAAGGCTGTGGTTT+TGG + chr4.1:75401613-75401632 MS.gene87550:CDS 45.0%
!! GGAATTGGTGTCAATTGGCA+AGG + chr4.1:75402485-75402504 MS.gene87550:CDS 45.0%
AGAAGATGGACCACTTGCCT+TGG - chr4.1:75402375-75402394 None:intergenic 50.0%
ATATGGTTGAGGAGCTCCCA+AGG + chr4.1:75403279-75403298 MS.gene87550:CDS 50.0%
CAACGCCAAAAGAGACATGG+CGG - chr4.1:75403007-75403026 None:intergenic 50.0%
CCAATGCTTCTAATGGCGAG+CGG - chr4.1:75402537-75402556 None:intergenic 50.0%
CCAGCCAGAGTTGAACTTGA+TGG - chr4.1:75401667-75401686 None:intergenic 50.0%
CCATCAAGTTCAACTCTGGC+TGG + chr4.1:75401664-75401683 MS.gene87550:CDS 50.0%
GGCAACCTTCTCACTTCTTG+CGG - chr4.1:75402354-75402373 None:intergenic 50.0%
TCGCCTAGAACTTGACAGGA+TGG - chr4.1:75403162-75403181 None:intergenic 50.0%
TGACCAATCCTTCTTCGGCA+TGG - chr4.1:75402574-75402593 None:intergenic 50.0%
CACCTGTCGCCTCAAGTCTT+CGG - chr4.1:75401744-75401763 None:intergenic 55.0%
GAGAAGCTGATCGGGAAGCT+GGG + chr4.1:75401527-75401546 MS.gene87550:CDS 55.0%
GAGAAGGTTGCCAAGGCAAG+TGG + chr4.1:75402362-75402381 MS.gene87550:intron 55.0%
TGAGAAGCTGATCGGGAAGC+TGG + chr4.1:75401526-75401545 MS.gene87550:CDS 55.0%
TTGGATGCAGAGGAGCAGCA+GGG + chr4.1:75401632-75401651 MS.gene87550:CDS 55.0%
TTTGGATGCAGAGGAGCAGC+AGG + chr4.1:75401631-75401650 MS.gene87550:CDS 55.0%
! CCGCTCGCCATTAGAAGCAT+TGG + chr4.1:75402534-75402553 MS.gene87550:CDS 55.0%
!!! GGCTGTGGTTTTGGATGCAG+AGG + chr4.1:75401622-75401641 MS.gene87550:CDS 55.0%
CACCGAAGACTTGAGGCGAC+AGG + chr4.1:75401739-75401758 MS.gene87550:CDS 60.0%
GATCGGGAAGCTGGGTTCAG+TGG + chr4.1:75401535-75401554 MS.gene87550:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 75401497 75404396 75401497 ID=MS.gene87550
chr4.1 mRNA 75401497 75404396 75401497 ID=MS.gene87550.t1;Parent=MS.gene87550
chr4.1 exon 75401497 75401890 75401497 ID=MS.gene87550.t1.exon1;Parent=MS.gene87550.t1
chr4.1 CDS 75401497 75401890 75401497 ID=cds.MS.gene87550.t1;Parent=MS.gene87550.t1
chr4.1 exon 75402436 75402633 75402436 ID=MS.gene87550.t1.exon2;Parent=MS.gene87550.t1
chr4.1 CDS 75402436 75402633 75402436 ID=cds.MS.gene87550.t1;Parent=MS.gene87550.t1
chr4.1 exon 75402730 75402829 75402730 ID=MS.gene87550.t1.exon3;Parent=MS.gene87550.t1
chr4.1 CDS 75402730 75402829 75402730 ID=cds.MS.gene87550.t1;Parent=MS.gene87550.t1
chr4.1 exon 75403178 75403300 75403178 ID=MS.gene87550.t1.exon4;Parent=MS.gene87550.t1
chr4.1 CDS 75403178 75403300 75403178 ID=cds.MS.gene87550.t1;Parent=MS.gene87550.t1
chr4.1 exon 75403400 75404396 75403400 ID=MS.gene87550.t1.exon5;Parent=MS.gene87550.t1
chr4.1 CDS 75403400 75404396 75403400 ID=cds.MS.gene87550.t1;Parent=MS.gene87550.t1
Gene Sequence

>MS.gene87550

ATGGCAGGAGGTCTTTTGTTCAACATGATTGAGAAGCTGATCGGGAAGCTGGGTTCAGTGGTTGTTGAAAGCTGGAATATGAGAGATGATCTTCAAAAGCTGGTGGACAATATGCTTGAGATCAAGGCTGTGGTTTTGGATGCAGAGGAGCAGCAGGGAGCCAACAACCATCAAGTTCAACTCTGGCTGGAAAAGCTCAAAGATGCTCTTGATGATGCCGATGACTTGCTCGATGACTTTAACACCGAAGACTTGAGGCGACAGGTGATGACCAGTAACAAGAAGGCTAAAAAGTTTCACATCTTCTTCTCATCATCCAACCAGCTTCTCTTTTCTTACAAAATGGTTCAGAAAATTAAGGAACTTAGTAACAGAATTGAAGCCCTTAATGTTGGTAAGAGAGTTTTTAATTTTACAAATCGCACACCTGAGCAGCGAGTTTTGAAACAAAGAGAAACTCATTCTTTTATTCGCGAGGAAGAAGTTATTGGAAGAGATAAGGAGAAGAAAGAGCTGATAGAGTTGTTGTTTAACACCGGCAACAATGTGAAAGAGAATGTTTCAGTTATTTCTATAATTGGAATCGGAGGACTTGGAAAGACTGCGCTTGCTCAACTTGTATACGGTGACAGAGAAGTGCAACAACATTTAGAGTTGAAAAAATGGGTTTGTGTTTCTGATGATTTTGATGTAAAAGGTATTACTTCAAAGATCATAGAATCTAAAACTAGTGTTGAGATCGATAAAGTGCAATCCAAACTCCGTGAAAAAGTTGAAGGGATAAGATATTTGCTTGTCTTGGATGACAATTGGAATGAGGATCGTGATCTTTGAAGGAAGTAAAATAATTATCACCGCAAGAAGTGAGAAGGTTGCCAAGGCAAGTGGTCCATCTTCTATCTTCAATTTAAAGGGACTCAATGACAAAGAATCTTGGAGATTTATATAGTCGGTTAGCTTTTGAGAGTTCCAGAGAACTAGAGAATGAGGAATTGGTGTCAATTGGCAAGGAAATTGTGAAAAAATGTTCAGGGGTTCCGCTCGCCATTAGAAGCATTGGAAGCTTGATGTATTCCATGCCGAAGAAGGATTGGTCAACATTCAAGAACAAAGATCTTATGAAAATTGATGAACAAGGTGATAATAAAATTATACAGCTTATCAAACTAAGTTATGATCATCTACCATTTCATTTGAAAAAGTGCTTTGCTTTCTGTTCATTGTTTCCAAAAGACTATTTAATTCCAAAAACAACATTGATTCGACTTTGGATTGCACAAGGGTTTGTTCAGTCATCAGATGAAAATACATGTTTAGAAGATATTGGTGATAAGTACTTCATGGATTTAGTTCATAAATCTTTCTTTCAAAATATCACCGAATATTCTTTCATTCACGACTTCGTGACTTTCCAAATGCATGATATTGTGCATGATCTGGCAAGTTTTATTTCAAGAAATGATTATCTTTTAGTTAATAAAAAAGGCCAGCATATCGACAAACAAATCCGCCATGTCTCTTTTGGCGTTGAATTGGATTCTTCCTGGCAAGTTCCAACTTCTCTTCTCAATTCTTACAATTTAAGGACATTTCTATTACCACTACATTGGACGAGTCCAATATTATATAGTGAAAGTCTATTGGAATTGTCTGCTTGTAATTCCATCCTGTCAAGTTCTAGGCGATTTCGTGTGATGAATCTTACCAACACAAAGTCAACGAAGATTCCATCTAGTATTGGAAGGATGAAACATCTAAGGTATCTTGACCTTTCTTGTTGTGATATGGTTGAGGAGCTCCCAAGGTCTATAACTGAATTAATTAACTTGGAGACTCTTTTACTCAATTTTTGTTCTAAATTGAGAGAGTTGCCCAAAGATCTTTGGAAGTTGGTAAGTCTTAGGCATCTTGAGTTGAATCGTTGTGATGACTTAACTTCTATGCCAATTGGAATAGGAAAGATGACTAATCTTCAAACACTGACACAGTTTGTGTTAGATACGACTTCTAGAGACAAATCTAAAACAAGTGAGATAGGAGGATTAAATAATTTGAGGGGACAACTCGAGATAAATGGCTTGGAACATCTGAGGCATTGTCCAACAGAAGCTAAGCATATGAATTTAATAGGGAAGTCACATCTTCGTCGATTAACATTGAATTGGAAACAACACATTGTTAGTAATGACAATGAGCATGAAAAAGATGATATAATTCTAAATCACATAGTTCTGCACTCCAATATCAAGGCCTTAGAAGTAAGTGGATTCGGTGGTGTGACATTGTCTAGTTCGGCCAATTTATATACAAATTTGGTTGAATTGGAGTTATCCGATTGCACAAGATTACAATATTTCAAACTCTCAATGTTGCATGTTACACACCTCCGCATGTTTAATTTGCCATGCCTAGAGTACATTGTTAATGATAACAATAGTGATAACTCATCATCATTTTGTGTGTCACTTAAAGATATATTTCTTTTTGGGTTAACAAATCTGAAAGGATGGTGTAACTGTAGTGAAGAAGAAATCTCAAGGGGTTGTTGTCATCAGTTTGAGAGTCTTGAAAGCTTATGTATTTCTGTTTGTTGTAATCTAGTTTCAATTCCACAACACACATATATCAGGGAAGTAATTCTTAGAGAGGTCAGAGAGACGATATTACAGCAAGCAGTCAATCATTCCCAACTAGAGTCTCTTGAGATAGAATCCATACTCAATTTGAAATCTCTCAGTGGAGTCTTTCAACATCTAGGTACACTCTGTGAATTGTGTATCCTCAATTGCGAGGAGTTTGATCCGTGCAATGATGAAGATGGTTGTTACAGCATGAAATGGAAAGAACTCACGAACCTCAAAGTATTGGTATTCAACACATTAGCAGTTTACAAACTCTGA
Protein sequence

>MS.gene87550.t1

MAGGLLFNMIEKLIGKLGSVVVESWNMRDDLQKLVDNMLEIKAVVLDAEEQQGANNHQVQLWLEKLKDALDDADDLLDDFNTEDLRRQVMTSNKKAKKFHIFFSSSNQLLFSYKMVQKIKELSNRIEALNVDLYSRLAFESSRELENEELVSIGKEIVKKCSGVPLAIRSIGSLMYSMPKKDWSTFKNKDLMKIDEQDYLIPKTTLIRLWIAQGFVQSSDENTCLEDIGDKRFRVMNLTNTKSTKIPSSIGRMKHLRYLDLSCCDMVEELPRHLELNRCDDLTSMPIGIGKMTNLQTLTQFVLDTTSRDKSKTSEIGGLNNLRGQLEINGLEHLRHCPTEAKHMNLIGKSHLRRLTLNWKQHIVSNDNEHEKDDIILNHIVLHSNIKALEVSGFGGVTLSSSANLYTNLVELELSDCTRLQYFKLSMLHVTHLRMFNLPCLEYIVNDNNSDNSSSFCVSLKDIFLFGLTNLKGWCNCSEEEISRGCCHQFESLESLCISVCCNLVSIPQHTYIREVILREVRETILQQAVNHSQLESLEIESILNLKSLSGVFQHLGTLCELCILNCEEFDPCNDEDGCYSMKWKELTNLKVLVFNTLAVYKL