AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059584


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059584.t1 MTR_8g032040 91.558 154 13 0 18 171 426 579 5.32e-95 292
MS.gene059584.t1 MTR_7g076650 81.169 154 29 0 18 171 423 576 3.56e-82 259
MS.gene059584.t1 MTR_7g076650 81.169 154 29 0 18 171 461 614 8.03e-82 259
MS.gene059584.t1 MTR_8g009500 61.039 154 60 0 18 171 355 508 4.16e-63 207
MS.gene059584.t1 MTR_8g009500 61.039 154 60 0 18 171 449 602 2.40e-62 207
MS.gene059584.t1 MTR_7g076650 88.542 96 11 0 18 113 423 518 2.24e-53 181
MS.gene059584.t1 MTR_8g102620 43.571 140 77 2 18 157 428 565 7.41e-28 112
MS.gene059584.t1 MTR_8g014390 45.324 139 74 2 19 157 426 562 7.30e-24 101
MS.gene059584.t1 MTR_3g110330 42.857 140 78 2 18 157 415 552 1.09e-23 100
MS.gene059584.t1 MTR_2g101040 42.143 140 79 2 18 157 512 649 1.20e-22 97.8
MS.gene059584.t1 MTR_2g101040 42.143 140 79 2 18 157 478 615 1.22e-22 97.8
MS.gene059584.t1 MTR_2g098580 50.467 107 7 1 172 232 334 440 4.89e-22 95.9
MS.gene059584.t1 MTR_2g101040 41.912 136 77 2 18 153 478 611 5.12e-22 95.9
MS.gene059584.t1 MTR_4g066650 49.533 107 8 1 172 232 324 430 2.29e-21 94.0
MS.gene059584.t1 MTR_2g101040 35.714 168 78 3 18 157 478 643 1.35e-18 85.9
MS.gene059584.t1 MTR_8g009500 63.636 55 20 0 18 72 449 503 8.03e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059584.t1 AT4G00570 75.974 154 37 0 18 171 429 582 1.43e-77 247
MS.gene059584.t1 AT2G13560 61.688 154 59 0 18 171 444 597 5.72e-64 211
MS.gene059584.t1 AT5G25880 42.857 154 84 3 18 171 425 574 6.96e-29 115
MS.gene059584.t1 AT5G25880 46.154 130 68 2 18 147 425 552 1.70e-28 114
MS.gene059584.t1 AT2G19900 45.000 140 75 2 18 157 319 456 1.49e-25 105
MS.gene059584.t1 AT2G19900 45.000 140 75 2 18 157 418 555 1.72e-25 105
MS.gene059584.t1 AT5G11670 44.615 130 70 2 18 147 425 552 3.33e-22 96.7
MS.gene059584.t1 AT1G79750 40.972 144 80 2 14 157 482 620 4.99e-22 95.9
MS.gene059584.t1 AT1G65430 39.231 130 25 3 172 249 315 442 3.19e-18 84.7
MS.gene059584.t1 AT2G31510 40.000 120 20 2 172 239 324 443 7.08e-17 80.9
MS.gene059584.t1 AT2G31510 40.000 120 20 2 172 239 324 443 7.76e-17 80.5
MS.gene059584.t1 AT2G31510 40.000 120 20 2 172 239 252 371 8.65e-17 80.5
MS.gene059584.t1 AT1G05890 41.121 107 17 1 172 232 319 425 3.87e-16 78.6
MS.gene059584.t1 AT1G05890 41.121 107 17 1 172 232 361 467 4.63e-16 78.6

Find 63 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCGAAAATGTAGATTT+TGG 0.215086 6.4:-61328687 MS.gene059584:intron
CCATGCCACATTGTTGTCTT+TGG 0.217598 6.4:+61326479 None:intergenic
CATAACCAAGGCTTGGTTAC+AGG 0.277378 6.4:-61326815 MS.gene059584:intron
AAAACTGTGTTAGATGGTTA+AGG 0.302490 6.4:-61326287 None:intergenic
TTCTCTATCAATATGTTAAT+AGG 0.315541 6.4:-61328025 MS.gene059584:intron
AGATTCAGTTCAGGTGCTTA+AGG 0.381679 6.4:-61328936 MS.gene059584:intron
TATTACAGATGGAATGTTGC+AGG 0.381871 6.4:-61328404 MS.gene059584:CDS
AAACTGTGTTAGATGGTTAA+GGG 0.396058 6.4:-61326286 None:intergenic
ATGTCTAATCCCACCTTGAA+TGG 0.407376 6.4:-61328872 MS.gene059584:intron
GATAGTAGGCTTTGTTGAAA+CGG 0.411748 6.4:+61328901 None:intergenic
CAGAGGGACATGGTGATGTC+TGG 0.416369 6.4:-61327542 MS.gene059584:CDS
AGCAGCAGTTGAAGAAGATC+TGG 0.417769 6.4:-61327565 MS.gene059584:CDS
TCAGAAAACAATGGAGCAAA+TGG 0.434254 6.4:-61326325 MS.gene059584:intron
TAACAGCCTTGCTTCATACA+TGG 0.459693 6.4:-61328072 MS.gene059584:intron
TTTACATTTCAGAATTGGGT+TGG 0.463759 6.4:-61328452 MS.gene059584:intron
TGAGAGATACCTTGGTATCA+AGG 0.487107 6.4:+61326409 None:intergenic
GCATGCCATACCCTGGGAAA+AGG 0.496064 6.4:+61328531 None:intergenic
TTACATTTCAGAATTGGGTT+GGG 0.498382 6.4:-61328451 MS.gene059584:intron
TTAAGTTCATAACCAAGGCT+TGG 0.501100 6.4:-61326822 MS.gene059584:CDS
TATCTACACAGGCTATGCCT+TGG 0.501872 6.4:-61327412 MS.gene059584:intron
ATTTACCTGTAACCAAGCCT+TGG 0.505137 6.4:+61326810 None:intergenic
GGGTTGGGAACACTTCTGTC+AGG 0.510046 6.4:-61328436 MS.gene059584:CDS
TTGTACAAACAAACCATTCA+AGG 0.510265 6.4:+61328859 None:intergenic
GACATGTTTGCAAGTTCTCT+AGG 0.513358 6.4:+61327519 None:intergenic
TCCTTGTAAAATATCTTCCT+CGG 0.518401 6.4:+61328049 None:intergenic
TTAGACATGGCAAAGATAGT+AGG 0.520220 6.4:+61328887 None:intergenic
CGAGATGTTACCGCAGAGGT+TGG 0.526147 6.4:-61327603 MS.gene059584:CDS
ACTTAAGCTGTGACTCAAGT+TGG 0.534419 6.4:+61326839 None:intergenic
CAACAATGTGGCATGGATCA+AGG 0.535302 6.4:-61326472 MS.gene059584:CDS
ACAGGCTATGCCTTGGTGCA+TGG 0.537971 6.4:-61327405 MS.gene059584:intron
GGTGCTCATCTTATTACAGA+TGG 0.539673 6.4:-61328415 MS.gene059584:CDS
AGCATCAATAGCAGTGCACT+CGG 0.544374 6.4:+61328752 None:intergenic
TGCGTAGGTGATGGGAAAGT+AGG 0.555200 6.4:-61328581 MS.gene059584:intron
GTAGTTTGCAGCTTTGTGTA+CGG 0.556100 6.4:-61326512 MS.gene059584:CDS
GAAGATCTGGCAGAGGGACA+TGG 0.561961 6.4:-61327552 MS.gene059584:CDS
CATGGTCAGACCATGGTGAA+AGG 0.567864 6.4:-61327387 MS.gene059584:CDS
TGTTGCAGGCAGCTGCTGAA+TGG 0.583927 6.4:-61328390 MS.gene059584:intron
AGTTGAAGAAGATCTGGCAG+AGG 0.586342 6.4:-61327559 MS.gene059584:CDS
GAAAACAATGGAGCAAATGG+TGG 0.588829 6.4:-61326322 MS.gene059584:CDS
TCAGACCATGGTGAAAGGAC+TGG 0.594334 6.4:-61327382 MS.gene059584:CDS
CCAAAGACAACAATGTGGCA+TGG 0.597743 6.4:-61326479 MS.gene059584:CDS
ATGAAGCAGCTAAACAAGAG+GGG 0.599723 6.4:-61327336 MS.gene059584:CDS
CCTTGCTTCATACATGGCCG+AGG 0.602257 6.4:-61328066 MS.gene059584:CDS
TATGAAGCAGCTAAACAAGA+GGG 0.604422 6.4:-61327337 MS.gene059584:CDS
ACAAACAAACCATTCAAGGT+GGG 0.617272 6.4:+61328863 None:intergenic
CCTCGGCCATGTATGAAGCA+AGG 0.623201 6.4:+61328066 None:intergenic
TACAAACAAACCATTCAAGG+TGG 0.625301 6.4:+61328862 None:intergenic
GTTGAAGAAGATCTGGCAGA+GGG 0.628603 6.4:-61327558 MS.gene059584:CDS
GTTTGCAGCTTTGTGTACGG+TGG 0.633716 6.4:-61326509 MS.gene059584:CDS
CTGGTATCTCCTTGATACCA+AGG 0.638858 6.4:-61326418 MS.gene059584:intron
TTATGAAGCAGCTAAACAAG+AGG 0.656326 6.4:-61327338 MS.gene059584:CDS
TGAAGCAGCTAAACAAGAGG+GGG 0.657257 6.4:-61327335 MS.gene059584:CDS
ATTCAAGGTGGGATTAGACA+TGG 0.659301 6.4:+61328874 None:intergenic
ACAGCTTAAGTTCATAACCA+AGG 0.664668 6.4:-61326827 MS.gene059584:CDS
GAACATATAGTGTTTGCCAG+TGG 0.673456 6.4:-61328714 MS.gene059584:CDS
CACAGCAGCTCCAACCTCTG+CGG 0.678848 6.4:+61327593 None:intergenic
ATCAAGGAGATACCAGCGTG+TGG 0.693564 6.4:+61326425 None:intergenic
AAAAGTACACAACCACACGC+TGG 0.694440 6.4:-61326437 MS.gene059584:CDS
CATGGTCTGACCATGCACCA+AGG 0.699416 6.4:+61327395 None:intergenic
CTTGGTGCATGGTCAGACCA+TGG 0.701151 6.4:-61327394 MS.gene059584:CDS
AATCGCCAGTCCTTTCACCA+TGG 0.713996 6.4:+61327377 None:intergenic
CATACGAGATGTTACCGCAG+AGG 0.720471 6.4:-61327607 MS.gene059584:CDS
CTAAGCCAAAGACAACAATG+TGG 0.796951 6.4:-61326484 MS.gene059584:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATTTGATTTTTAAT+AGG - chr6.4:61328982-61329001 MS.gene059584:intron 10.0%
!! AAAATTTAATGAAACTAATG+TGG - chr6.4:61327755-61327774 MS.gene059584:intron 15.0%
!! ATAATAAAAACTAATGAAAG+AGG + chr6.4:61327012-61327031 None:intergenic 15.0%
!! ATCTTTATAAAAATATGTCT+CGG + chr6.4:61328425-61328444 None:intergenic 15.0%
!! CAATGAAATTATTAACAAAA+TGG + chr6.4:61327490-61327509 None:intergenic 15.0%
!! GAATATTAGATTAATAATGA+AGG - chr6.4:61329040-61329059 MS.gene059584:intron 15.0%
!! TACAAAAATAACTATGAATT+TGG + chr6.4:61328648-61328667 None:intergenic 15.0%
!!! CATTTTGTTAATAATTTCAT+TGG - chr6.4:61327488-61327507 MS.gene059584:intron 15.0%
!!! TCTTTTGATTATTTTTTGTT+GGG - chr6.4:61328692-61328711 MS.gene059584:CDS 15.0%
!!! TTTTTATTTTCAGAAAACAA+TGG - chr6.4:61329333-61329352 MS.gene059584:intron 15.0%
!! AAACAAAAGAAAATAATCAG+AGG + chr6.4:61327683-61327702 None:intergenic 20.0%
!! AAATTCATATTGCTTTAATG+TGG + chr6.4:61329076-61329095 None:intergenic 20.0%
!! AACAAAAGAAAATAATCAGA+GGG + chr6.4:61327682-61327701 None:intergenic 20.0%
!! ATTTCAAAAACTTTGAACAA+AGG + chr6.4:61328902-61328921 None:intergenic 20.0%
!! GTGACATATAAAAATAAAGT+AGG + chr6.4:61327528-61327547 None:intergenic 20.0%
!! TAGATATATGGTATCATATT+TGG + chr6.4:61327810-61327829 None:intergenic 20.0%
!! TCTTTATAAAAATATGTCTC+GGG + chr6.4:61328424-61328443 None:intergenic 20.0%
!! TTCTCTATCAATATGTTAAT+AGG - chr6.4:61327642-61327661 MS.gene059584:intron 20.0%
!! TTTACTTACAATTGAGTTAT+TGG - chr6.4:61327173-61327192 MS.gene059584:intron 20.0%
!!! AAAAAGTGTAAATGTTACTA+TGG + chr6.4:61326856-61326875 None:intergenic 20.0%
!!! ACATTTTTGTTTGTCTATTA+CGG - chr6.4:61326885-61326904 MS.gene059584:intron 20.0%
!!! CACATATTTTGTTAGATATA+TGG + chr6.4:61327822-61327841 None:intergenic 20.0%
!!! CTTTTTTTTTGTTTGTTTCA+TGG - chr6.4:61328669-61328688 MS.gene059584:intron 20.0%
!!! GTCTTTTGATTATTTTTTGT+TGG - chr6.4:61328691-61328710 MS.gene059584:CDS 20.0%
!!! TGGTGTTATTAAAGTTTATA+CGG - chr6.4:61329303-61329322 MS.gene059584:intron 20.0%
! AACTGAAAAAAGAAGAGAAA+TGG - chr6.4:61328486-61328505 MS.gene059584:intron 25.0%
! AATAAATATGAGAGATACCT+TGG + chr6.4:61329269-61329288 None:intergenic 25.0%
! AATCTTAATCTGTGTTCTTA+TGG - chr6.4:61328758-61328777 MS.gene059584:intron 25.0%
! ATAAATATCTTTGACAGCTT+TGG - chr6.4:61326660-61326679 MS.gene059584:intron 25.0%
! CAGGTAAATGAATGAATATT+TGG - chr6.4:61328871-61328890 MS.gene059584:intron 25.0%
! GAACTTTACATTTCAGAATT+GGG - chr6.4:61327211-61327230 MS.gene059584:intron 25.0%
! TGAACTTTACATTTCAGAAT+TGG - chr6.4:61327210-61327229 MS.gene059584:intron 25.0%
!! ACTTTTCCCAATTTATCAAA+AGG - chr6.4:61328182-61328201 MS.gene059584:intron 25.0%
!! CAAAATCTACATTTTCGAAA+GGG + chr6.4:61326982-61327001 None:intergenic 25.0%
!! CTCTATCCTTTTGATAAATT+GGG + chr6.4:61328191-61328210 None:intergenic 25.0%
!! GTGTTATTAAAGTTTATACG+GGG - chr6.4:61329305-61329324 MS.gene059584:intron 25.0%
!! TTTATTGTCTAACTGAGTTT+TGG - chr6.4:61329283-61329302 MS.gene059584:intron 25.0%
!!! AACCAAAGTCTTATTTGTTT+TGG + chr6.4:61329125-61329144 None:intergenic 25.0%
!!! AATAGAAAGTCTTGTTGATT+TGG - chr6.4:61327932-61327951 MS.gene059584:intron 25.0%
!!! ACCAAAGTCTTATTTGTTTT+GGG + chr6.4:61329124-61329143 None:intergenic 25.0%
!!! ATTTTTGTTTGTCTATTACG+GGG - chr6.4:61326887-61326906 MS.gene059584:intron 25.0%
!!! CATTTTTGTTTGTCTATTAC+GGG - chr6.4:61326886-61326905 MS.gene059584:intron 25.0%
!!! GGTGTTATTAAAGTTTATAC+GGG - chr6.4:61329304-61329323 MS.gene059584:intron 25.0%
!!! TATGGTGTCCTTTTTTTTAT+TGG - chr6.4:61328776-61328795 MS.gene059584:intron 25.0%
AACAGAAAGGGAAAAAAGTA+TGG + chr6.4:61328585-61328604 None:intergenic 30.0%
AACCTTCTTAACCTAAAGAT+CGG + chr6.4:61326520-61326539 None:intergenic 30.0%
AAGAAACGCTGTAAAACTTA+TGG + chr6.4:61327429-61327448 None:intergenic 30.0%
ACAGAAGAAACTAAACAGAA+AGG + chr6.4:61328598-61328617 None:intergenic 30.0%
CAGAAGAAACTAAACAGAAA+GGG + chr6.4:61328597-61328616 None:intergenic 30.0%
GAAAATAATCAGAGGGAAAA+TGG + chr6.4:61327675-61327694 None:intergenic 30.0%
GACTTAAAAACTGTGTTAGA+TGG - chr6.4:61329374-61329393 MS.gene059584:CDS 30.0%
TAATAGTTGAGATTCAGTTC+AGG - chr6.4:61326722-61326741 MS.gene059584:intron 30.0%
TCCATCTGCCAATAAAAAAA+AGG + chr6.4:61328787-61328806 None:intergenic 30.0%
TCCTTGTAAAATATCTTCCT+CGG + chr6.4:61327621-61327640 None:intergenic 30.0%
TTACATTTCAGAATTGGGTT+GGG - chr6.4:61327216-61327235 MS.gene059584:intron 30.0%
TTGAATGAATTGATGCAATG+TGG - chr6.4:61328953-61328972 MS.gene059584:intron 30.0%
TTGTACAAACAAACCATTCA+AGG + chr6.4:61326811-61326830 None:intergenic 30.0%
TTTACATTTCAGAATTGGGT+TGG - chr6.4:61327215-61327234 MS.gene059584:intron 30.0%
TTTACCAAATGTAAGAGCTT+CGG - chr6.4:61327868-61327887 MS.gene059584:intron 30.0%
! ATTGATGCTTTTAATCATGC+TGG - chr6.4:61326929-61326948 MS.gene059584:intron 30.0%
! CCAAAATCTACATTTTCGAA+AGG + chr6.4:61326983-61327002 None:intergenic 30.0%
! CCTTTCGAAAATGTAGATTT+TGG - chr6.4:61326980-61326999 MS.gene059584:intron 30.0%
! GCTCTATCCTTTTGATAAAT+TGG + chr6.4:61328192-61328211 None:intergenic 30.0%
! GTGCAATTAAAATTTTGCGT+AGG - chr6.4:61327071-61327090 MS.gene059584:intron 30.0%
! TAAAATTTTGCGTAGGTGAT+GGG - chr6.4:61327078-61327097 MS.gene059584:intron 30.0%
! TGGTTTTCTGTATGTTATCT+AGG - chr6.4:61327775-61327794 MS.gene059584:intron 30.0%
! TTAAAATTTTGCGTAGGTGA+TGG - chr6.4:61327077-61327096 MS.gene059584:intron 30.0%
! TTTTATGCAGATCAAGCTTT+AGG - chr6.4:61326316-61326335 MS.gene059584:CDS 30.0%
!! TAGATAAAAGGTGCTCTATT+AGG + chr6.4:61328241-61328260 None:intergenic 30.0%
!! TTTTTGTTTGTCTATTACGG+GGG - chr6.4:61326888-61326907 MS.gene059584:intron 30.0%
!!! CCAAAGTCTTATTTGTTTTG+GGG + chr6.4:61329123-61329142 None:intergenic 30.0%
!!! TCCTTTTTTTTATTGGCAGA+TGG - chr6.4:61328783-61328802 MS.gene059584:intron 30.0%
!!! TCTTATTTGTTTTGGGGAAA+AGG + chr6.4:61329117-61329136 None:intergenic 30.0%
AAAAATATGTCTCGGGAATG+TGG + chr6.4:61328417-61328436 None:intergenic 35.0%
AAATGTAAGAGCTTCGGATA+TGG - chr6.4:61327874-61327893 MS.gene059584:intron 35.0%
AACGACTATACAAGAGATAG+TGG + chr6.4:61327850-61327869 None:intergenic 35.0%
ACAAACAAACCATTCAAGGT+GGG + chr6.4:61326807-61326826 None:intergenic 35.0%
ACAGCTTAAGTTCATAACCA+AGG - chr6.4:61328840-61328859 MS.gene059584:intron 35.0%
ACGACTATACAAGAGATAGT+GGG + chr6.4:61327849-61327868 None:intergenic 35.0%
AGATTTCAACTACTGAGAAC+AGG + chr6.4:61328003-61328022 None:intergenic 35.0%
ATATCCGAAGCTCTTACATT+TGG + chr6.4:61327875-61327894 None:intergenic 35.0%
CCCCAAAACAAATAAGACTT+TGG - chr6.4:61329120-61329139 MS.gene059584:intron 35.0%
GATAGAAATGCAAGTGTAGA+AGG + chr6.4:61326604-61326623 None:intergenic 35.0%
GGTACACACATTATTATGAG+CGG - chr6.4:61328527-61328546 MS.gene059584:intron 35.0%
GTTCATGTCATAAAAGAGAC+AGG + chr6.4:61327717-61327736 None:intergenic 35.0%
GTTCTCAGTAGTTGAAATCT+TGG - chr6.4:61328003-61328022 MS.gene059584:intron 35.0%
TACAAACAAACCATTCAAGG+TGG + chr6.4:61326808-61326827 None:intergenic 35.0%
TATGAAGCAGCTAAACAAGA+GGG - chr6.4:61328330-61328349 MS.gene059584:intron 35.0%
TATTACAGATGGAATGTTGC+AGG - chr6.4:61327263-61327282 MS.gene059584:intron 35.0%
TCAGAAAACAATGGAGCAAA+TGG - chr6.4:61329342-61329361 MS.gene059584:intron 35.0%
TGGCAAAGAATTCATTAGAG+AGG - chr6.4:61328506-61328525 MS.gene059584:intron 35.0%
TGTATATGACAAGATGCAAC+AGG + chr6.4:61327550-61327569 None:intergenic 35.0%
TTAAGTTCATAACCAAGGCT+TGG - chr6.4:61328845-61328864 MS.gene059584:intron 35.0%
TTAGACATGGCAAAGATAGT+AGG + chr6.4:61326783-61326802 None:intergenic 35.0%
TTATGAAGCAGCTAAACAAG+AGG - chr6.4:61328329-61328348 MS.gene059584:intron 35.0%
TTCTTAACCTAAAGATCGGT+AGG + chr6.4:61326516-61326535 None:intergenic 35.0%
! AAAGGGAAAAAAGTATGGAG+TGG + chr6.4:61328580-61328599 None:intergenic 35.0%
! AACAATATGTACCTTTTCCC+AGG - chr6.4:61327125-61327144 MS.gene059584:intron 35.0%
! ACAATATGTACCTTTTCCCA+GGG - chr6.4:61327126-61327145 MS.gene059584:intron 35.0%
! TACCGATCTTTAGGTTAAGA+AGG - chr6.4:61326515-61326534 MS.gene059584:CDS 35.0%
!! GATAGTAGGCTTTGTTGAAA+CGG + chr6.4:61326769-61326788 None:intergenic 35.0%
!!! TGTTGGTGGTATTTTCAACA+AGG - chr6.4:61326569-61326588 MS.gene059584:intron 35.0%
AATAAGACTTTGGTTGCTGC+AGG - chr6.4:61329130-61329149 MS.gene059584:intron 40.0%
ACACACATTATTATGAGCGG+TGG - chr6.4:61328530-61328549 MS.gene059584:intron 40.0%
ACTTAAGCTGTGACTCAAGT+TGG + chr6.4:61328831-61328850 None:intergenic 40.0%
AGATTCAGTTCAGGTGCTTA+AGG - chr6.4:61326731-61326750 MS.gene059584:intron 40.0%
ATGAAGCAGCTAAACAAGAG+GGG - chr6.4:61328331-61328350 MS.gene059584:intron 40.0%
ATGCATTGCTGACAGAAACT+TGG - chr6.4:61329018-61329037 MS.gene059584:intron 40.0%
ATGCTGCAGTACACAAAGTA+GGG + chr6.4:61328043-61328062 None:intergenic 40.0%
ATGTCTAATCCCACCTTGAA+TGG - chr6.4:61326795-61326814 MS.gene059584:intron 40.0%
ATTCAAGGTGGGATTAGACA+TGG + chr6.4:61326796-61326815 None:intergenic 40.0%
ATTTACCTGTAACCAAGCCT+TGG + chr6.4:61328860-61328879 None:intergenic 40.0%
CACACATTATTATGAGCGGT+GGG - chr6.4:61328531-61328550 MS.gene059584:intron 40.0%
CTAAGCCAAAGACAACAATG+TGG - chr6.4:61329183-61329202 MS.gene059584:intron 40.0%
GAAAACAATGGAGCAAATGG+TGG - chr6.4:61329345-61329364 MS.gene059584:intron 40.0%
GAACATATAGTGTTTGCCAG+TGG - chr6.4:61326953-61326972 MS.gene059584:intron 40.0%
GACATGTTTGCAAGTTCTCT+AGG + chr6.4:61328151-61328170 None:intergenic 40.0%
GACTTCAAGAGACATAGATG+TGG + chr6.4:61328214-61328233 None:intergenic 40.0%
GCATAGCCTGTGTAGATAAA+AGG + chr6.4:61328253-61328272 None:intergenic 40.0%
GGTGCTCATCTTATTACAGA+TGG - chr6.4:61327252-61327271 MS.gene059584:intron 40.0%
TAACAGCCTTGCTTCATACA+TGG - chr6.4:61327595-61327614 MS.gene059584:CDS 40.0%
TATGCTGCAGTACACAAAGT+AGG + chr6.4:61328044-61328063 None:intergenic 40.0%
TCGGTAGGTTCAACAAGTAA+AGG + chr6.4:61326501-61326520 None:intergenic 40.0%
TGAGAGATACCTTGGTATCA+AGG + chr6.4:61329261-61329280 None:intergenic 40.0%
TGTTGAACCTACCGATCTTT+AGG - chr6.4:61326506-61326525 MS.gene059584:CDS 40.0%
! AAAAAAGCATGCCATACCCT+GGG + chr6.4:61327145-61327164 None:intergenic 40.0%
! GCCGAGGAAGATATTTTACA+AGG - chr6.4:61327617-61327636 MS.gene059584:intron 40.0%
! GTAGTTTGCAGCTTTGTGTA+CGG - chr6.4:61329155-61329174 MS.gene059584:intron 40.0%
! TGGTGGTATTTTCAACAAGG+AGG - chr6.4:61326572-61326591 MS.gene059584:intron 40.0%
! TTTGAAATCGCGTCATTCAG+AGG - chr6.4:61328914-61328933 MS.gene059584:CDS 40.0%
!! AGAGCACCTTTTATCTACAC+AGG - chr6.4:61328244-61328263 MS.gene059584:intron 40.0%
AGCAGCAGTTGAAGAAGATC+TGG - chr6.4:61328102-61328121 MS.gene059584:intron 45.0%
AGCATCAATAGCAGTGCACT+CGG + chr6.4:61326918-61326937 None:intergenic 45.0%
AGTTGAAGAAGATCTGGCAG+AGG - chr6.4:61328108-61328127 MS.gene059584:intron 45.0%
CAACAATGTGGCATGGATCA+AGG - chr6.4:61329195-61329214 MS.gene059584:intron 45.0%
CCAAAGACAACAATGTGGCA+TGG - chr6.4:61329188-61329207 MS.gene059584:intron 45.0%
CCATGCCACATTGTTGTCTT+TGG + chr6.4:61329191-61329210 None:intergenic 45.0%
CTGGTATCTCCTTGATACCA+AGG - chr6.4:61329249-61329268 MS.gene059584:intron 45.0%
GTTGAAGAAGATCTGGCAGA+GGG - chr6.4:61328109-61328128 MS.gene059584:intron 45.0%
TATCTACACAGGCTATGCCT+TGG - chr6.4:61328255-61328274 MS.gene059584:intron 45.0%
TGAAGCAGCTAAACAAGAGG+GGG - chr6.4:61328332-61328351 MS.gene059584:intron 45.0%
! AAAAGTACACAACCACACGC+TGG - chr6.4:61329230-61329249 MS.gene059584:intron 45.0%
! ATGTACCTTTTCCCAGGGTA+TGG - chr6.4:61327131-61327150 MS.gene059584:intron 45.0%
! ATTTTCGAAAGGGCTTCCAC+TGG + chr6.4:61326972-61326991 None:intergenic 45.0%
! CAAAAAAGCATGCCATACCC+TGG + chr6.4:61327146-61327165 None:intergenic 45.0%
! CATAACCAAGGCTTGGTTAC+AGG - chr6.4:61328852-61328871 MS.gene059584:intron 45.0%
! GGGAAAAAAGTATGGAGTGG+AGG + chr6.4:61328577-61328596 None:intergenic 45.0%
!!! CAGGGTATGGCATGCTTTTT+TGG - chr6.4:61327144-61327163 MS.gene059584:intron 45.0%
AAGACTTTGGTTGCTGCAGG+TGG - chr6.4:61329133-61329152 MS.gene059584:intron 50.0%
AATCGCCAGTCCTTTCACCA+TGG + chr6.4:61328293-61328312 None:intergenic 50.0%
ATCAAGGAGATACCAGCGTG+TGG + chr6.4:61329245-61329264 None:intergenic 50.0%
CACCAACACCAGACAAACCT+AGG + chr6.4:61326557-61326576 None:intergenic 50.0%
CATACGAGATGTTACCGCAG+AGG - chr6.4:61328060-61328079 MS.gene059584:CDS 50.0%
CATGGTCAGACCATGGTGAA+AGG - chr6.4:61328280-61328299 MS.gene059584:intron 50.0%
CTCCTAGGTTTGTCTGGTGT+TGG - chr6.4:61326552-61326571 MS.gene059584:intron 50.0%
TCAGACCATGGTGAAAGGAC+TGG - chr6.4:61328285-61328304 MS.gene059584:intron 50.0%
! CTAGGTTTGTCTGGTGTTGG+TGG - chr6.4:61326555-61326574 MS.gene059584:intron 50.0%
! GGGCTAGCAACCAATCTGTA+AGG - chr6.4:61328551-61328570 MS.gene059584:CDS 50.0%
! GTTTGCAGCTTTGTGTACGG+TGG - chr6.4:61329158-61329177 MS.gene059584:intron 50.0%
!! TGCGTAGGTGATGGGAAAGT+AGG - chr6.4:61327086-61327105 MS.gene059584:intron 50.0%
AGCAGCTAAACAAGAGGGGG+TGG - chr6.4:61328335-61328354 MS.gene059584:intron 55.0%
CACGTGCTCCTAGGTTTGTC+TGG - chr6.4:61326546-61326565 MS.gene059584:intron 55.0%
CATGGTCTGACCATGCACCA+AGG + chr6.4:61328275-61328294 None:intergenic 55.0%
CCTCGGCCATGTATGAAGCA+AGG + chr6.4:61327604-61327623 None:intergenic 55.0%
CCTTGCTTCATACATGGCCG+AGG - chr6.4:61327601-61327620 MS.gene059584:CDS 55.0%
CGAGATGTTACCGCAGAGGT+TGG - chr6.4:61328064-61328083 MS.gene059584:CDS 55.0%
GAAGATCTGGCAGAGGGACA+TGG - chr6.4:61328115-61328134 MS.gene059584:intron 55.0%
GCATGCCATACCCTGGGAAA+AGG + chr6.4:61327139-61327158 None:intergenic 55.0%
GGAGTGGAGGCCTTACAGAT+TGG + chr6.4:61328564-61328583 None:intergenic 55.0%
GGGTTGGGAACACTTCTGTC+AGG - chr6.4:61327231-61327250 MS.gene059584:intron 55.0%
GTTAAGCCACACGTGCTCCT+AGG - chr6.4:61326537-61326556 MS.gene059584:intron 55.0%
TGTTGCAGGCAGCTGCTGAA+TGG - chr6.4:61327277-61327296 MS.gene059584:intron 55.0%
! ACAGGCTATGCCTTGGTGCA+TGG - chr6.4:61328262-61328281 MS.gene059584:intron 55.0%
! CAGAGGGACATGGTGATGTC+TGG - chr6.4:61328125-61328144 MS.gene059584:intron 55.0%
! CTTGGTGCATGGTCAGACCA+TGG - chr6.4:61328273-61328292 MS.gene059584:intron 55.0%
! GACAAACCTAGGAGCACGTG+TGG + chr6.4:61326546-61326565 None:intergenic 55.0%
CACAGCAGCTCCAACCTCTG+CGG + chr6.4:61328077-61328096 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 61326289 61329400 61326289 ID=MS.gene059584
chr6.4 mRNA 61326289 61329400 61326289 ID=MS.gene059584.t1;Parent=MS.gene059584
chr6.4 exon 61329352 61329400 61329352 ID=MS.gene059584.t1.exon1;Parent=MS.gene059584.t1
chr6.4 CDS 61329352 61329400 61329352 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61328873 61328950 61328873 ID=MS.gene059584.t1.exon2;Parent=MS.gene059584.t1
chr6.4 CDS 61328873 61328950 61328873 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61328688 61328774 61328688 ID=MS.gene059584.t1.exon3;Parent=MS.gene059584.t1
chr6.4 CDS 61328688 61328774 61328688 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61328542 61328596 61328542 ID=MS.gene059584.t1.exon4;Parent=MS.gene059584.t1
chr6.4 CDS 61328542 61328596 61328542 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61328391 61328462 61328391 ID=MS.gene059584.t1.exon5;Parent=MS.gene059584.t1
chr6.4 CDS 61328391 61328462 61328391 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61328026 61328088 61328026 ID=MS.gene059584.t1.exon6;Parent=MS.gene059584.t1
chr6.4 CDS 61328026 61328088 61328026 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61327522 61327629 61327522 ID=MS.gene059584.t1.exon7;Parent=MS.gene059584.t1
chr6.4 CDS 61327522 61327629 61327522 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61327333 61327423 61327333 ID=MS.gene059584.t1.exon8;Parent=MS.gene059584.t1
chr6.4 CDS 61327333 61327423 61327333 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61326816 61326887 61326816 ID=MS.gene059584.t1.exon9;Parent=MS.gene059584.t1
chr6.4 CDS 61326816 61326887 61326816 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61326419 61326537 61326419 ID=MS.gene059584.t1.exon10;Parent=MS.gene059584.t1
chr6.4 CDS 61326419 61326537 61326419 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
chr6.4 exon 61326289 61326343 61326289 ID=MS.gene059584.t1.exon11;Parent=MS.gene059584.t1
chr6.4 CDS 61326289 61326343 61326289 ID=cds.MS.gene059584.t1;Parent=MS.gene059584.t1
Gene Sequence

>MS.gene059584

ATGATGTCTAGAGATGATTCTAGAAGATTTTATGCAGATCAAGCTTTAGGTATGATATAACAAACTGTTAACTTCAGATTTTGATTAATTAAATTGATTATGAATTAGTATTTGATTATTGATTTTAATTAACTTTATGAATTAGTAGTGAAAATACTAATGTTGATTTTAATTAACTAATGATGCTAGTTTTAAATACTAATGTTGATCCTTTACTTGTTGAACCTACCGATCTTTAGGTTAAGAAGGTTAAGCCACACGTGCTCCTAGGTTTGTCTGGTGTTGGTGGTATTTTCAACAAGGAGGTAATTACCTTCTACACTTGCATTTCTATCATGTCATATTGAAAATATATTAAATAATTAAATTTAATAAATATCTTTGACAGCTTTGGTTACTGTATGAACTTTTTTTGAGTTGAGTTCTTAAAATTTAATAGTTGAGATTCAGTTCAGGTGCTTAAGGCAATGAGAGAATCCGTTTCAACAAAGCCTACTATCTTTGCCATGTCTAATCCCACCTTGAATGGTTTGTTTGTACAAAGCTTATTAAGCATTCACATTTCCATAGTAACATTTACACTTTTTTTTACTCTAACATTTTTGTTTGTCTATTACGGGGGACAGCCGAGTGCACTGCTATTGATGCTTTTAATCATGCTGGAGAACATATAGTGTTTGCCAGTGGAAGCCCTTTCGAAAATGTAGATTTTGGTAATTACCTCTTTCATTAGTTTTTATTATATCGTGTACAGTTCACATTTTCAATAGCTAATTGTTTTTGTGCAATTAAAATTTTGCGTAGGTGATGGGAAAGTAGGCTATGTAAATCAAGCAAACAATATGTACCTTTTCCCAGGGTATGGCATGCTTTTTTGGATTTTATTTACTTACAATTGAGTTATTGGTGTAACTTTTATTTTGAACTTTACATTTCAGAATTGGGTTGGGAACACTTCTGTCAGGTGCTCATCTTATTACAGATGGAATGTTGCAGGCAGCTGCTGAATGGTATGATGTTAATTTAGACAATTGTTTATTTTTTACTATATTGTGAGAGTATTTTTTACTATATTGTGATAGTATTTTTTACTGCTCAAATTGTCAACATGATAACTCTATACACGACATGCACTCACCATAAGTTTTACAGCGTTTCTTATCATTCGTGCTTTTCTTAAGCAAAGCATAAATGATCACCATTTTGTTAATAATTTCATTGGATTAAATTGCAAATCCTACTTTATTTTTATATGTCACCTGTTGCATCTTGTCATATACATTGCTAACATTATGCATTTTCATTTTAACAGCCTTGCTTCATACATGGCCGAGGAAGATATTTTACAAGGAATTCTCTATCAATATGTTAATAGGTAATGTTCCATTTTCCCTCTGATTATTTTCTTTTGTTTGTTCTGCTTTTCCTGTCTCTTTTATGACATGAACAGAACAAATGAAGTTAAAAAAATTTAATGAAACTAATGTGGTTTTCTGTATGTTATCTAGGATTTAGAAACCAAATATGATACCATATATCTAACAAAATATGTGTTCGCCCACTATCTCTTGTATAGTCGTTTACCAAATGTAAGAGCTTCGGATATGGTTAAAAAAACGTGTTCTCGACAACATTCTTATTATAATAGAAAGTCTTGTTGATTTGGTTGTTTGTTGAGAAGCTAAAAAGTTCTCAGTAGTTGAAATTATTGCCTGTTCTCAGTAGTTGAAATCTTGGTCTTCTCTTATTAACCCTACTTTGTGTACTGCAGCATACGAGATGTTACCGCAGAGGTTGGAGCTGCTGTGCTTCGAGCAGCAGTTGAAGAAGATCTGGCAGAGGGACATGGTGATGTCTGGCCTAGAGAACTTGCAAACATGTCAAAAGTATGCAACTTTTCCCAATTTATCAAAAGGATAGAGCCACATCTATGTCTCTTGAAGTCAGTACCTAATAGAGCACCTTTTATCTACACAGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGCGATTTCTACGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGGGTGGTAAGAGACTTAGAAATACTCAACTTCTCTTGATTCAGTTTTCAGTATACTATTAAACCACATTCCCGAGACATATTTTTATAAAGATATCAGACTGTGAAAGAAATCTTGTTGTATGTAGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCATTAGAGAGGTACACACATTATTATGAGCGGTGGGCTAGCAACCAATCTGTAAGGCCTCCACTCCATACTTTTTTCCCTTTCTGTTTAGTTTCTTCTGTATCAGAACTCGTACTGCTCTACAGTTTCCAAATTCATAGTTATTTTTGTAACTTTTTTTTTGTTTGTTTCATGGTCTTTTGATTATTTTTTGTTGGGTATTTGTTAATTTTAGATGCTTTCAGATCAAAGACTTACAGTAAATCTTAATCTGTGTTCTTATGGTGTCCTTTTTTTTATTGGCAGATGGAGAAGCTTAGTGACACACAGTGCCAACTTGAGTCACAGCTTAAGTTCATAACCAAGGCTTGGTTACAGGTAAATGAATGAATATTTGGTTATACCTTTGTTCAAAGTTTTTGAAATCGCGTCATTCAGAGGATTCATATCGAATGCGTTGAATGAATTGATGCAATGTGGAGTGAAAAAAACATTTGATTTTTAATAGGACAATCTATTCTTATGCATTGCTGACAGAAACTTGGAATATTAGATTAATAATGAAGGTTTTCTTTCACCACATTAAAGCAATATGAATTTCAACAAATGAGATTGAAACCTTTTCCCCAAAACAAATAAGACTTTGGTTGCTGCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAATGTGGCATGGATCAAGGACAATAGACGTGAAAAGTACACAACCACACGCTGGTATCTCCTTGATACCAAGGTATCTCTCATATTTATTGTCTAACTGAGTTTTGGTGTTATTAAAGTTTATACGGGGTTGATTTTTTATTTTCAGAAAACAATGGAGCAAATGGTGGATAAGCGACTTAAAAACTGTGTTAGATGGTTAA

Protein sequence

>MS.gene059584.t1

MMSRDDSRRFYADQALVQVLKAMRESVSTKPTIFAMSNPTLNAECTAIDAFNHAGEHIVFASGSPFENVDFGDGKVGYVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAAAECLASYMAEEDILQGILYQYVNSIRDVTAEVGAAVLRAAVEEDLAEGHGDVWPRELANMLCLGAWSDHGERTGDFYACNRYEAAKQEGVMEKLSDTQCQLESQLKFITKAWLQVVVCSFVYGGSKPKTTMWHGSRTIDVKSTQPHAGISLIPRKQWSKWWISDLKTVLDG