AlfalfaGEDB | MS.gene87721

M. sativa cultivar XinJiangDaYe / MS.gene87721

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87721.t1	XP_013442640.1	87.3	236	30	0	1	236	1	236	2.90E-111	411.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87721.t1	Q9FKK2	44.7	228	111	5	5	217	3	230	4.6e-41	169.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87721.t1	A0A072TSY1	87.3	236	30	0	1	236	1	236	2.1e-111	411.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene87721.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene87721	MS.gene22094	PPI
MS.gene87721	MS.gene068836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87721.t1	MTR_0121s0080	87.288	236	30	0	1	236	1	236	4.21e-152	422
MS.gene87721.t1	MTR_7g062350	84.685	222	33	1	16	236	27	248	5.22e-138	387
MS.gene87721.t1	MTR_8g043650	72.574	237	64	1	1	236	1	237	1.44e-122	348
MS.gene87721.t1	MTR_1g105920	74.886	219	55	0	1	219	1	219	1.18e-117	335
MS.gene87721.t1	MTR_1g105910	72.889	225	61	0	1	225	1	225	6.87e-117	333
MS.gene87721.t1	MTR_2g030740	73.973	219	57	0	1	219	1	219	5.38e-116	331
MS.gene87721.t1	MTR_1g012570	72.146	219	61	0	1	219	1	219	1.99e-113	325
MS.gene87721.t1	MTR_1g108510	69.787	235	53	3	1	225	1	227	3.10e-113	324
MS.gene87721.t1	MTR_3g030770	69.787	235	53	3	1	225	1	227	7.92e-112	320
MS.gene87721.t1	MTR_2g093190	70.213	235	52	3	1	225	1	227	1.60e-111	319

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87721.t1	AT5G60440	53.892	167	74	2	5	168	3	169	4.09e-53	173
MS.gene87721.t1	AT2G24840	44.720	161	78	4	9	163	63	218	1.04e-36	130
MS.gene87721.t1	AT1G01530	43.293	164	90	2	4	166	2	163	1.83e-35	126
MS.gene87721.t1	AT1G65360	35.111	225	122	7	5	211	3	221	2.78e-34	122
MS.gene87721.t1	AT4G36590	38.462	182	104	3	5	179	3	183	9.70e-32	117
MS.gene87721.t1	AT3G04100	32.934	167	98	4	2	159	7	168	4.60e-24	95.9
MS.gene87721.t1	AT2G34440	39.823	113	67	1	9	121	2	113	3.60e-21	87.4
MS.gene87721.t1	AT3G66656	38.655	119	69	1	9	123	2	120	1.82e-20	85.5
MS.gene87721.t1	AT1G28460	32.222	180	108	4	5	177	4	176	7.55e-20	84.0
MS.gene87721.t1	AT1G72350	52.055	73	33	1	9	81	43	113	8.63e-19	82.4

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Find 54 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCAATAGAATCCGGG+GGG	0.771286	7.1:+29286832	None:intergenic
AAATCATTACCAAGAGAAAA+TGG	0.314064	7.1:+29286988	None:intergenic
AATATGGAAGGAGGAGGATA+TGG	0.330377	7.1:-29286856	MS.gene87721:CDS
AATCAACAACACACTGGACG+AGG	0.587728	7.1:-29287202	MS.gene87721:CDS
AATGAGCTTTGCACCCTTTG+TGG	0.404337	7.1:-29287408	MS.gene87721:CDS
ACCATGTCGAGCGGAAGGAA+AGG	0.542544	7.1:-29287528	MS.gene87721:CDS
ACCGCAAAACAATAGCACCA+TGG	0.712731	7.1:-29287283	MS.gene87721:CDS
ACCTTTCCTTCCGCTCGACA+TGG	0.533133	7.1:+29287527	None:intergenic
ACTTTCTCAAAGCGTCGTAG+TGG	0.602122	7.1:-29287447	MS.gene87721:CDS
AGAAACTTCAATAGAATCCG+GGG	0.619380	7.1:+29286830	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTGCAACCTCATTTAAT+TGG	-	chr7.1:29287476-29287495	MS.gene87721:CDS	30.0%
ATTAAATGAGGTTGCAACAT+AGG	+	chr7.1:29287476-29287495	None:intergenic	30.0%
GTCCAATTGATAGAATGAAT+AGG	-	chr7.1:29287249-29287268	MS.gene87721:CDS	30.0%
TTAAATGAGGTTGCAACATA+GGG	+	chr7.1:29287475-29287494	None:intergenic	30.0%
TTGTTGAAGCCAATTAAATG+AGG	+	chr7.1:29287488-29287507	None:intergenic	30.0%
GCCCTATTCATTCTATCAAT+TGG	+	chr7.1:29287254-29287273	None:intergenic	35.0%
GTTTCAAATCAACAACACAC+TGG	-	chr7.1:29287154-29287173	MS.gene87721:CDS	35.0%
TCTATGACCGTATCAACATT+TGG	+	chr7.1:29287038-29287057	None:intergenic	35.0%
TGTATTCTCACCTAGTGAAA+AGG	-	chr7.1:29286995-29287014	MS.gene87721:CDS	35.0%
TTGTTGCTCAACATGTTGAT+AGG	-	chr7.1:29287318-29287337	MS.gene87721:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	29286837	29287547	29286837	ID=MS.gene87721
chr7.1	mRNA	29286837	29287547	29286837	ID=MS.gene87721.t1;Parent=MS.gene87721
chr7.1	exon	29286837	29287547	29286837	ID=MS.gene87721.t1.exon1;Parent=MS.gene87721.t1
chr7.1	CDS	29286837	29287547	29286837	ID=cds.MS.gene87721.t1;Parent=MS.gene87721.t1

Gene Sequence

>MS.gene87721

ATGTCGAGCGGAAGGAAAGGTCGTGGTAGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTCCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAGAAAGTCAATGAGCTTTGCACCCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCTAGTGAAAAGGTATTTTCTTTCGGTCATCCAAATGTTGATACGGTCATAGATCGCTATCTCTCTGGGATCCCACCGCAAAACAATAGCACCATGGAATTCATTGAGGCTCACCGTAGCGCCAAAGTGCGTGAGCTCAATGCTGAGTTGTTTCAAATCAACAACACACTGGACGAGGAGAAAAAGTGTGGTGATGAGTTGAGCCTTTTGTGCAAGGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTGATAGAATGAATAGGGCTCAGCTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCAACATGTTGATAGGAGTGCAATTCAGGGTGCTTCTGCTCACACTTTTCCATTTTCTCTTGGTAATGATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTTCGCCACAAATTTTTCATAACCCTATGTTGCAACCTCATTTAATTGGCTTCAACAATATGGAAGGAGGAGGATATGGACCCCCCGGATTCTATTGA

Protein sequence

>MS.gene87721.t1

MSSGRKGRGSQKIEMKKMSNESNLQVTFSKRRSGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDRYLSGIPPQNNSTMEFIEAHRSAKVRELNAELFQINNTLDEEKKCGDELSLLCKAFKAQFWWACPIDRMNRAQLELFKKILVELKKLVAQHVDRSAIQGASAHTFPFSLGNDLSSNIPLHYQPNPQQTEMFSPQIFHNPMLQPHLIGFNNMEGGGYGPPGFY