Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87745.t1 | XP_003623571.2 | 99.2 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 6.70E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87745.t1 | Q61207 | 34.6 | 81 | 45 | 3 | 47 | 121 | 63 | 141 | 7.6e-07 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87745.t1 | G7KX29 | 99.2 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 4.9e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012660 | MS.gene87745 | PPI |
| MS.gene27206 | MS.gene87745 | PPI |
| MS.gene042166 | MS.gene87745 | PPI |
| MS.gene87745 | MS.gene68850 | PPI |
| MS.gene02356 | MS.gene87745 | PPI |
| MS.gene87745 | MS.gene002990 | PPI |
| MS.gene68947 | MS.gene87745 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87745.t1 | MTR_7g072560 | 99.174 | 242 | 2 | 0 | 1 | 242 | 1 | 242 | 1.02e-177 | 488 |
| MS.gene87745.t1 | MTR_4g029040 | 49.554 | 224 | 101 | 2 | 1 | 224 | 1 | 212 | 1.26e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87745.t1 | AT3G51730 | 45.500 | 200 | 102 | 2 | 20 | 219 | 20 | 212 | 2.59e-59 | 187 |
| MS.gene87745.t1 | AT5G01800 | 42.857 | 161 | 91 | 1 | 46 | 205 | 38 | 198 | 4.10e-48 | 158 |
Find 36 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACTGTTTCGTCACTAT+TGG | 0.292619 | 7.1:-29651817 | MS.gene87745:CDS |
| AGGAAATATTAGCAATGTTC+TGG | 0.310964 | 7.1:+29651874 | None:intergenic |
| TGCACTTCAGTGGACAAGTT+TGG | 0.321322 | 7.1:-29651569 | MS.gene87745:CDS |
| CTCTTGTTTATTGTGGTACT+AGG | 0.336340 | 7.1:-29655189 | MS.gene87745:CDS |
| GCTGCAAACTCAGCCTCTTC+TGG | 0.359103 | 7.1:-29655114 | MS.gene87745:intron |
| GCCTGGAGATTTCTGCAATA+AGG | 0.360633 | 7.1:-29651907 | MS.gene87745:CDS |
| GCACTTCAGTGGACAAGTTT+GGG | 0.387009 | 7.1:-29651568 | MS.gene87745:CDS |
| GGAACCATGGAAGGGAGAAT+TGG | 0.412534 | 7.1:-29655213 | None:intergenic |
| TGAAAATGCAGAGAAATTCC+TGG | 0.440898 | 7.1:-29651267 | MS.gene87745:CDS |
| ACTTAAGAGGTCAGAAAGAA+AGG | 0.447038 | 7.1:+29651181 | None:intergenic |
| AAGAAGATTGTTCTAGAGTA+TGG | 0.452684 | 7.1:-29651302 | MS.gene87745:CDS |
| TCACAAAGTGCGCACACATC+TGG | 0.464769 | 7.1:+29652396 | None:intergenic |
| TTCCATAAAAGATACTTAAG+AGG | 0.466000 | 7.1:+29651168 | None:intergenic |
| ACCTTATTGCAGAAATCTCC+AGG | 0.483134 | 7.1:+29651906 | None:intergenic |
| TGCATATATCTGTCTTCTCC+AGG | 0.494087 | 7.1:+29651249 | None:intergenic |
| CAAGAGGACTTGCAAACCCT+TGG | 0.501291 | 7.1:-29655146 | MS.gene87745:CDS |
| AATTGGACTCTTGTTTATTG+TGG | 0.502021 | 7.1:-29655196 | MS.gene87745:CDS |
| AGTGGACAAGTTTGGGAGCA+AGG | 0.504563 | 7.1:-29651561 | MS.gene87745:intron |
| TCTTCTCAAAAGTGTGAAGC+TGG | 0.512735 | 7.1:+29652289 | None:intergenic |
| AGATAACTAACCTCAGTGTC+AGG | 0.513065 | 7.1:+29651780 | None:intergenic |
| TGTTCTAGAGTATGGTCCCT+TGG | 0.519354 | 7.1:-29651294 | MS.gene87745:CDS |
| CACTGCATTACATGCTTGCA+AGG | 0.531010 | 7.1:-29651228 | MS.gene87745:CDS |
| GAGTCCAATTCTCCCTTCCA+TGG | 0.540717 | 7.1:+29655209 | None:intergenic |
| GTCATTTCTGAGAAGAAAAG+TGG | 0.545442 | 7.1:+29651939 | None:intergenic |
| GAAATGACCTCAGTTCAGCC+TGG | 0.547453 | 7.1:-29651924 | MS.gene87745:CDS |
| ATTTATATAATCAAGTGCCT+TGG | 0.554678 | 7.1:+29652362 | None:intergenic |
| TTGCAGCAATGATGCTCCAA+GGG | 0.555078 | 7.1:+29655130 | None:intergenic |
| TGTACAGTGCATCAACTTGG+TGG | 0.565409 | 7.1:-29651973 | MS.gene87745:intron |
| GCTGAAAGTGTGCACTTCAG+TGG | 0.569778 | 7.1:-29651579 | MS.gene87745:CDS |
| GCTCTGGCTTGTGATGCAAG+AGG | 0.590110 | 7.1:-29655162 | MS.gene87745:CDS |
| AATTGTACAGTGCATCAACT+TGG | 0.599834 | 7.1:-29651976 | MS.gene87745:intron |
| TTTGCAGCAATGATGCTCCA+AGG | 0.601227 | 7.1:+29655129 | None:intergenic |
| AGATGTGTGCGCACTTTGTG+AGG | 0.640022 | 7.1:-29652394 | MS.gene87745:CDS |
| GAAATCTCCAGGCTGAACTG+AGG | 0.667607 | 7.1:+29651917 | None:intergenic |
| TTGTGAGGAATATACTACCA+AGG | 0.703017 | 7.1:-29652379 | MS.gene87745:CDS |
| GATAAAAGATCCTGACACTG+AGG | 0.712954 | 7.1:-29651790 | MS.gene87745:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATTGTTTATATTGA+AGG | - | chr7.1:29652553-29652572 | MS.gene87745:intron | 10.0% |
| !! | TTCTATTTATTAATGAATAT+TGG | - | chr7.1:29651285-29651304 | MS.gene87745:CDS | 10.0% |
| !!! | TTTTTTCCTATAAAATTTTT+CGG | - | chr7.1:29653627-29653646 | MS.gene87745:intron | 10.0% |
| !! | AAAGTAGATTTCTTAATAAT+TGG | + | chr7.1:29652911-29652930 | None:intergenic | 15.0% |
| !! | AATTATCTTCATATACTATA+AGG | - | chr7.1:29654870-29654889 | MS.gene87745:intron | 15.0% |
| !! | ATAAACAATATAATAAACCA+AGG | + | chr7.1:29652548-29652567 | None:intergenic | 15.0% |
| !! | CTTAGATTTGATTAAAATTA+AGG | - | chr7.1:29651402-29651421 | MS.gene87745:intron | 15.0% |
| !! | TAAACAATATAATAAACCAA+GGG | + | chr7.1:29652547-29652566 | None:intergenic | 15.0% |
| !! | TACAATTGTTGAAAAAATAA+AGG | - | chr7.1:29653144-29653163 | MS.gene87745:intron | 15.0% |
| !!! | AAACAATATTTTTATGAGAA+TGG | - | chr7.1:29655178-29655197 | MS.gene87745:CDS | 15.0% |
| !!! | TAAAAACATGATATTTTTGT+AGG | - | chr7.1:29652156-29652175 | MS.gene87745:intron | 15.0% |
| !!! | TATTTTATTGACAAATTGTT+TGG | + | chr7.1:29653745-29653764 | None:intergenic | 15.0% |
| !!! | TTAATAAGTTGAACTTATTT+AGG | - | chr7.1:29652792-29652811 | MS.gene87745:intron | 15.0% |
| !!! | TTTATTGATTATGATATACT+AGG | - | chr7.1:29652990-29653009 | MS.gene87745:intron | 15.0% |
| !!! | TTTTTTCTCATAAATTTTTG+TGG | - | chr7.1:29651845-29651864 | MS.gene87745:CDS | 15.0% |
| !! | AAAAACACATGAATTGATAA+AGG | + | chr7.1:29654325-29654344 | None:intergenic | 20.0% |
| !! | AAACAATATAATAAACCAAG+GGG | + | chr7.1:29652546-29652565 | None:intergenic | 20.0% |
| !! | AGTTCAACTTATTAATACTT+AGG | + | chr7.1:29652787-29652806 | None:intergenic | 20.0% |
| !! | ATGATGATATAGGAAATTTA+TGG | - | chr7.1:29652392-29652411 | MS.gene87745:CDS | 20.0% |
| !! | CAATAATGATGAAAGTAATT+AGG | - | chr7.1:29651698-29651717 | MS.gene87745:intron | 20.0% |
| !! | GATACATTAATAAGTGATAT+AGG | - | chr7.1:29652178-29652197 | MS.gene87745:intron | 20.0% |
| !! | TAAAATAAAACCGATATGAA+AGG | - | chr7.1:29653758-29653777 | MS.gene87745:intron | 20.0% |
| !! | TAATGCTTAGTATATATTGA+GGG | - | chr7.1:29653027-29653046 | MS.gene87745:intron | 20.0% |
| !! | TACCTATAATAGATTCAAAA+TGG | + | chr7.1:29651561-29651580 | None:intergenic | 20.0% |
| !! | TCTCAAATTATTAATCGTAT+TGG | - | chr7.1:29654221-29654240 | MS.gene87745:intron | 20.0% |
| !! | TGATGATATAGGAAATTTAT+GGG | - | chr7.1:29652393-29652412 | MS.gene87745:CDS | 20.0% |
| !! | TTAATGCTTAGTATATATTG+AGG | - | chr7.1:29653026-29653045 | MS.gene87745:intron | 20.0% |
| !! | TTATTAATGAATATTGGTGA+AGG | - | chr7.1:29651291-29651310 | MS.gene87745:CDS | 20.0% |
| !!! | AATTTTGGAAACAGAATAAT+TGG | - | chr7.1:29653386-29653405 | MS.gene87745:intron | 20.0% |
| !!! | ATCCATTTTGAATCTATTAT+AGG | - | chr7.1:29651556-29651575 | MS.gene87745:intron | 20.0% |
| !!! | TAAATGAGAAGTATTTTGTT+GGG | - | chr7.1:29653450-29653469 | MS.gene87745:intron | 20.0% |
| !!! | TAATAAGTGATATAGGTTTT+AGG | - | chr7.1:29652185-29652204 | MS.gene87745:intron | 20.0% |
| !!! | TATACGGTTATAATATGTTT+TGG | + | chr7.1:29653477-29653496 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTTGAACTTTTA+AGG | + | chr7.1:29654474-29654493 | None:intergenic | 20.0% |
| !!! | TTAAATGAGAAGTATTTTGT+TGG | - | chr7.1:29653449-29653468 | MS.gene87745:intron | 20.0% |
| !!! | TTTCATTTTAAAATTTCAGC+TGG | - | chr7.1:29654707-29654726 | MS.gene87745:intron | 20.0% |
| !!! | TTTGATCCGAAAAATTTTAT+AGG | + | chr7.1:29653636-29653655 | None:intergenic | 20.0% |
| ! | AAATCAGTAGATGAGAAAAA+AGG | + | chr7.1:29654966-29654985 | None:intergenic | 25.0% |
| ! | AACAATATAATAAACCAAGG+GGG | + | chr7.1:29652545-29652564 | None:intergenic | 25.0% |
| ! | ACAAAAATACCGAAAACAAA+CGG | + | chr7.1:29653326-29653345 | None:intergenic | 25.0% |
| ! | ATACTATAAGGAATGATTTC+CGG | - | chr7.1:29654882-29654901 | MS.gene87745:intron | 25.0% |
| ! | ATAGAATTATCGGAAAATTG+TGG | + | chr7.1:29654811-29654830 | None:intergenic | 25.0% |
| ! | ATTTATATAATCAAGTGCCT+TGG | + | chr7.1:29653966-29653985 | None:intergenic | 25.0% |
| ! | CAAAATAAAGCCTTTCATAT+CGG | + | chr7.1:29653771-29653790 | None:intergenic | 25.0% |
| ! | CAGATATATCATGAATACAA+GGG | - | chr7.1:29652505-29652524 | MS.gene87745:intron | 25.0% |
| ! | CTTAAATCAAAGATAAGTGT+GGG | - | chr7.1:29652099-29652118 | MS.gene87745:intron | 25.0% |
| ! | GAGATAAATGCCAAAAAAAT+GGG | - | chr7.1:29651443-29651462 | MS.gene87745:intron | 25.0% |
| ! | TAGGTACAAATGTATAATTG+CGG | - | chr7.1:29651717-29651736 | MS.gene87745:intron | 25.0% |
| ! | TATGATATACTAGGTATAGA+AGG | - | chr7.1:29652999-29653018 | MS.gene87745:intron | 25.0% |
| ! | TATGGAATACTAATAAGTCT+TGG | - | chr7.1:29651472-29651491 | MS.gene87745:intron | 25.0% |
| ! | TGAGATAAATGCCAAAAAAA+TGG | - | chr7.1:29651442-29651461 | MS.gene87745:intron | 25.0% |
| ! | TGCAGTTAGTATAGAATTAT+CGG | + | chr7.1:29654821-29654840 | None:intergenic | 25.0% |
| ! | TGTCATAGATTGCTAATTTA+AGG | + | chr7.1:29652216-29652235 | None:intergenic | 25.0% |
| ! | TTAAATTAGCAATCTATGAC+AGG | - | chr7.1:29652215-29652234 | MS.gene87745:intron | 25.0% |
| ! | TTCCATAAAAGATACTTAAG+AGG | + | chr7.1:29655160-29655179 | None:intergenic | 25.0% |
| ! | TTTGATAGACATGATGATAT+AGG | - | chr7.1:29652382-29652401 | MS.gene87745:CDS | 25.0% |
| !! | GATTTTGTCTATCAATCATA+CGG | - | chr7.1:29651739-29651758 | MS.gene87745:intron | 25.0% |
| !! | TTCAAACCATTTTCAAACAT+CGG | - | chr7.1:29652032-29652051 | MS.gene87745:intron | 25.0% |
| !!! | TATATAATGCCGTTTGTTTT+CGG | - | chr7.1:29653314-29653333 | MS.gene87745:intron | 25.0% |
| !!! | TTTTTTCTCATCTACTGATT+TGG | - | chr7.1:29654965-29654984 | MS.gene87745:intron | 25.0% |
| AAATAAGAGAAACCGAACAT+AGG | - | chr7.1:29651797-29651816 | MS.gene87745:CDS | 30.0% | |
| ACAATATAATAAACCAAGGG+GGG | + | chr7.1:29652544-29652563 | None:intergenic | 30.0% | |
| ACATATTTATCTGAGAAACC+TGG | - | chr7.1:29652596-29652615 | MS.gene87745:intron | 30.0% | |
| ACCAAAACACAAGATACAAA+AGG | + | chr7.1:29654072-29654091 | None:intergenic | 30.0% | |
| AGACATTTACTGCAAAGTAA+AGG | - | chr7.1:29652877-29652896 | MS.gene87745:intron | 30.0% | |
| AGGAAATATTAGCAATGTTC+TGG | + | chr7.1:29654454-29654473 | None:intergenic | 30.0% | |
| AGTAAATGTCTAAGGAAAGA+GGG | + | chr7.1:29652868-29652887 | None:intergenic | 30.0% | |
| AGTGATGAAACAGTTTCATT+TGG | + | chr7.1:29654634-29654653 | None:intergenic | 30.0% | |
| ATGGGTGCTTACAATTTATA+CGG | + | chr7.1:29653493-29653512 | None:intergenic | 30.0% | |
| CAAAAAAATGGGATGGAATA+TGG | - | chr7.1:29651454-29651473 | MS.gene87745:intron | 30.0% | |
| CAGATTATAATATCAAGACC+AGG | + | chr7.1:29652617-29652636 | None:intergenic | 30.0% | |
| CAGCAATGTTAGATGAAAAT+GGG | + | chr7.1:29653511-29653530 | None:intergenic | 30.0% | |
| CAGTAAAATATGTCACATGA+AGG | - | chr7.1:29653289-29653308 | MS.gene87745:intron | 30.0% | |
| CCTATATCATTGATGTTGAT+CGG | - | chr7.1:29653056-29653075 | MS.gene87745:intron | 30.0% | |
| CCTTAAATCAAAGATAAGTG+TGG | - | chr7.1:29652098-29652117 | MS.gene87745:intron | 30.0% | |
| CGGATCAAATTCTATAGTAT+AGG | - | chr7.1:29653647-29653666 | MS.gene87745:intron | 30.0% | |
| GCAGATATATCATGAATACA+AGG | - | chr7.1:29652504-29652523 | MS.gene87745:intron | 30.0% | |
| GGATGCTATGAATTTATAGT+AGG | - | chr7.1:29653077-29653096 | MS.gene87745:intron | 30.0% | |
| GTAAAAAATGTTACCAGAAG+AGG | + | chr7.1:29651227-29651246 | None:intergenic | 30.0% | |
| TAAATGCCAAAAAAATGGGA+TGG | - | chr7.1:29651447-29651466 | MS.gene87745:intron | 30.0% | |
| TACAGTTTGAATTGCAAATG+TGG | - | chr7.1:29653852-29653871 | MS.gene87745:intron | 30.0% | |
| TACTTTGCAGTAAATGTCTA+AGG | + | chr7.1:29652876-29652895 | None:intergenic | 30.0% | |
| TCACATGAAGGTTTAGATAA+TGG | - | chr7.1:29653250-29653269 | MS.gene87745:intron | 30.0% | |
| TCAGCAATGTTAGATGAAAA+TGG | + | chr7.1:29653512-29653531 | None:intergenic | 30.0% | |
| TTCAGTCAACAAAAAACAAG+TGG | - | chr7.1:29653349-29653368 | MS.gene87745:intron | 30.0% | |
| TTGAAAAAGATAGAGCAAGA+CGG | - | chr7.1:29653185-29653204 | MS.gene87745:intron | 30.0% | |
| TTGTTGAAATTGTAGCTCAT+TGG | + | chr7.1:29653603-29653622 | None:intergenic | 30.0% | |
| ! | AATTGGACTCTTGTTTATTG+TGG | - | chr7.1:29651129-29651148 | MS.gene87745:CDS | 30.0% |
| ! | ACAAGTAACCATAAGAGTAT+GGG | - | chr7.1:29651902-29651921 | MS.gene87745:CDS | 30.0% |
| ! | ACCTTTTGTATCTTGTGTTT+TGG | - | chr7.1:29654068-29654087 | MS.gene87745:intron | 30.0% |
| ! | ATGCATTCTTTAAGGACTTA+TGG | - | chr7.1:29652321-29652340 | MS.gene87745:CDS | 30.0% |
| ! | CCACACTTATCTTTGATTTA+AGG | + | chr7.1:29652101-29652120 | None:intergenic | 30.0% |
| ! | GACCTCTTAAGTATCTTTTA+TGG | - | chr7.1:29655155-29655174 | MS.gene87745:CDS | 30.0% |
| ! | TATCAAAGATTTTCACGTGA+TGG | + | chr7.1:29653807-29653826 | None:intergenic | 30.0% |
| ! | TCTGCATTTTCAAATACCAA+GGG | + | chr7.1:29655050-29655069 | None:intergenic | 30.0% |
| ! | TGCATTCTTTAAGGACTTAT+GGG | - | chr7.1:29652322-29652341 | MS.gene87745:CDS | 30.0% |
| ! | TTGATTTAAGGTGATGTCTA+AGG | + | chr7.1:29652089-29652108 | None:intergenic | 30.0% |
| !! | AAGAAGATTGTTCTAGAGTA+TGG | - | chr7.1:29655023-29655042 | MS.gene87745:intron | 30.0% |
| !! | CAATTGACAACCATTTTTCA+AGG | + | chr7.1:29654909-29654928 | None:intergenic | 30.0% |
| !!! | CATATTCCATCCCATTTTTT+TGG | + | chr7.1:29651456-29651475 | None:intergenic | 30.0% |
| AAATGGATCTGAATCTTCCA+TGG | + | chr7.1:29651544-29651563 | None:intergenic | 35.0% | |
| AATCTATGACAGGACAAACA+GGG | - | chr7.1:29652225-29652244 | MS.gene87745:intron | 35.0% | |
| AATCTCTTTGACCAAGATTG+AGG | - | chr7.1:29653535-29653554 | MS.gene87745:intron | 35.0% | |
| AATTGTACAGTGCATCAACT+TGG | - | chr7.1:29654349-29654368 | MS.gene87745:intron | 35.0% | |
| ACTGCTTGATGCATTCTTTA+AGG | - | chr7.1:29652313-29652332 | MS.gene87745:CDS | 35.0% | |
| ACTTAAGAGGTCAGAAAGAA+AGG | + | chr7.1:29655147-29655166 | None:intergenic | 35.0% | |
| AGAAACTGTTTCGTCACTAT+TGG | - | chr7.1:29654508-29654527 | MS.gene87745:intron | 35.0% | |
| ATAAGATTCATGCTATGGTG+AGG | - | chr7.1:29651517-29651536 | MS.gene87745:intron | 35.0% | |
| CAACTCAAACTATTGTGTCA+AGG | - | chr7.1:29651650-29651669 | MS.gene87745:intron | 35.0% | |
| CACCATAGCATGAATCTTAT+GGG | + | chr7.1:29651517-29651536 | None:intergenic | 35.0% | |
| CAGTAAATGTCTAAGGAAAG+AGG | + | chr7.1:29652869-29652888 | None:intergenic | 35.0% | |
| CCGATCAACATCAATGATAT+AGG | + | chr7.1:29653059-29653078 | None:intergenic | 35.0% | |
| CTCAAAACTTGACCTATGTT+CGG | + | chr7.1:29651812-29651831 | None:intergenic | 35.0% | |
| CTTAACAACAAGAACCACAT+AGG | + | chr7.1:29652698-29652717 | None:intergenic | 35.0% | |
| GAAATTGTAGCTCATTGGTA+AGG | + | chr7.1:29653598-29653617 | None:intergenic | 35.0% | |
| GAATGATACAGTGACACAAT+TGG | + | chr7.1:29651950-29651969 | None:intergenic | 35.0% | |
| GACAAGTAACCATAAGAGTA+TGG | - | chr7.1:29651901-29651920 | MS.gene87745:CDS | 35.0% | |
| GACTTATGGGAAGTAAGATA+TGG | - | chr7.1:29652335-29652354 | MS.gene87745:CDS | 35.0% | |
| GATGAGAAAAAAGGTCGATT+AGG | + | chr7.1:29654957-29654976 | None:intergenic | 35.0% | |
| GTTTCCTAGAGTTCAAATTG+TGG | - | chr7.1:29652672-29652691 | MS.gene87745:intron | 35.0% | |
| TAAATCACACTAACATCGCA+AGG | + | chr7.1:29652974-29652993 | None:intergenic | 35.0% | |
| TCACCATAGCATGAATCTTA+TGG | + | chr7.1:29651518-29651537 | None:intergenic | 35.0% | |
| TCATACAAAGTCCTCAATCT+TGG | + | chr7.1:29653549-29653568 | None:intergenic | 35.0% | |
| TGAAAATGCAGAGAAATTCC+TGG | - | chr7.1:29655058-29655077 | MS.gene87745:intron | 35.0% | |
| TTGAATGCAATCACATGTGT+CGG | + | chr7.1:29654190-29654209 | None:intergenic | 35.0% | |
| TTGTGAGGAATATACTACCA+AGG | - | chr7.1:29653946-29653965 | MS.gene87745:intron | 35.0% | |
| TTGTTACCGAGAGAATTTGA+AGG | + | chr7.1:29651681-29651700 | None:intergenic | 35.0% | |
| TTTCTTCATACTGCAGAACT+AGG | - | chr7.1:29653899-29653918 | MS.gene87745:intron | 35.0% | |
| ! | ACTCTGTTGTTGTTCTGATA+TGG | - | chr7.1:29653107-29653126 | MS.gene87745:intron | 35.0% |
| ! | AGAATGCATCAAGCAGTTTT+AGG | + | chr7.1:29652310-29652329 | None:intergenic | 35.0% |
| ! | ATTTAAGGTGATGTCTAAGG+TGG | + | chr7.1:29652086-29652105 | None:intergenic | 35.0% |
| ! | CGAATCGCTATTACATTTTG+TGG | - | chr7.1:29654664-29654683 | MS.gene87745:intron | 35.0% |
| ! | CTCTGCATTTTCAAATACCA+AGG | + | chr7.1:29655051-29655070 | None:intergenic | 35.0% |
| ! | CTCTTGTTTATTGTGGTACT+AGG | - | chr7.1:29651136-29651155 | MS.gene87745:CDS | 35.0% |
| ! | CTGAAGATTGCTCTATTTTG+AGG | - | chr7.1:29655209-29655228 | MS.gene87745:CDS | 35.0% |
| ! | CTTGGTAACATGTTATATGC+TGG | - | chr7.1:29651490-29651509 | MS.gene87745:intron | 35.0% |
| ! | GTCATTTCTGAGAAGAAAAG+TGG | + | chr7.1:29654389-29654408 | None:intergenic | 35.0% |
| ! | TAGTTCTGCAGTATGAAGAA+AGG | + | chr7.1:29653900-29653919 | None:intergenic | 35.0% |
| ! | TCTTGCACTGCAAACATTTT+GGG | + | chr7.1:29655007-29655026 | None:intergenic | 35.0% |
| ! | TTCTTGCACTGCAAACATTT+TGG | + | chr7.1:29655008-29655027 | None:intergenic | 35.0% |
| ! | TTTAAGGTGATGTCTAAGGT+GGG | + | chr7.1:29652085-29652104 | None:intergenic | 35.0% |
| !! | GTAGTAGAATTTGTTGCTCT+AGG | + | chr7.1:29654847-29654866 | None:intergenic | 35.0% |
| !! | TGATTTTAAGTGACAGCAGA+TGG | - | chr7.1:29652417-29652436 | MS.gene87745:intron | 35.0% |
| !!! | TCAAGCAGTTTTAGGTATGA+AGG | + | chr7.1:29652302-29652321 | None:intergenic | 35.0% |
| ACAAACAAACCTGTGCACTT+TGG | - | chr7.1:29652446-29652465 | MS.gene87745:intron | 40.0% | |
| ACCTAGGAGGAAATCTTAGT+AGG | - | chr7.1:29653417-29653436 | MS.gene87745:intron | 40.0% | |
| ACCTTATTGCAGAAATCTCC+AGG | + | chr7.1:29654422-29654441 | None:intergenic | 40.0% | |
| AGATAACTAACCTCAGTGTC+AGG | + | chr7.1:29654548-29654567 | None:intergenic | 40.0% | |
| AGATAAGTGTGGGAAGTTTG+TGG | - | chr7.1:29652109-29652128 | MS.gene87745:intron | 40.0% | |
| AGTTCAAATTGTGGCCTATG+TGG | - | chr7.1:29652681-29652700 | MS.gene87745:intron | 40.0% | |
| ATCTATGACAGGACAAACAG+GGG | - | chr7.1:29652226-29652245 | MS.gene87745:intron | 40.0% | |
| CAACAAAAAACAAGTGGCAG+TGG | - | chr7.1:29653355-29653374 | MS.gene87745:intron | 40.0% | |
| CAATCTATGACAGGACAAAC+AGG | - | chr7.1:29652224-29652243 | MS.gene87745:intron | 40.0% | |
| CCTAGGAGGAAATCTTAGTA+GGG | - | chr7.1:29653418-29653437 | MS.gene87745:intron | 40.0% | |
| CGATTCATTGTGTCACATGA+AGG | - | chr7.1:29653238-29653257 | MS.gene87745:intron | 40.0% | |
| CTAAGATTTCCTCCTAGGTT+CGG | + | chr7.1:29653416-29653435 | None:intergenic | 40.0% | |
| GAAACAGCTCTGTCATAACA+TGG | + | chr7.1:29652657-29652676 | None:intergenic | 40.0% | |
| GATAAAAGATCCTGACACTG+AGG | - | chr7.1:29654535-29654554 | MS.gene87745:intron | 40.0% | |
| GATTTCCGGACCTTGAAAAA+TGG | - | chr7.1:29654896-29654915 | MS.gene87745:intron | 40.0% | |
| GGCTAAGACAATGACTTGAT+CGG | - | chr7.1:29651760-29651779 | MS.gene87745:intron | 40.0% | |
| GGTGAACCGATGTTTGAAAA+TGG | + | chr7.1:29652041-29652060 | None:intergenic | 40.0% | |
| GTAGTATCTTGTACGGTTCA+CGG | + | chr7.1:29652062-29652081 | None:intergenic | 40.0% | |
| GTCCCATAAGATTCATGCTA+TGG | - | chr7.1:29651512-29651531 | MS.gene87745:intron | 40.0% | |
| TAGGCCACAATTTGAACTCT+AGG | + | chr7.1:29652679-29652698 | None:intergenic | 40.0% | |
| TCTTACCTTGCATTTGCAGA+AGG | - | chr7.1:29651582-29651601 | MS.gene87745:CDS | 40.0% | |
| TGCATATATCTGTCTTCTCC+AGG | + | chr7.1:29655079-29655098 | None:intergenic | 40.0% | |
| TGTGATAACCTATGTAGCAC+TGG | - | chr7.1:29654113-29654132 | MS.gene87745:intron | 40.0% | |
| TGTTTGTGTCAGTGCTTCAT+AGG | - | chr7.1:29654276-29654295 | MS.gene87745:intron | 40.0% | |
| TTACCGAGAGAATTTGAAGG+AGG | + | chr7.1:29651678-29651697 | None:intergenic | 40.0% | |
| TTGATATCGTGCGACTAGAA+AGG | + | chr7.1:29651633-29651652 | None:intergenic | 40.0% | |
| ! | AACCATAAGAGTATGGGCTT+CGG | - | chr7.1:29651908-29651927 | MS.gene87745:CDS | 40.0% |
| ! | GTGTCACTGTATCATTCATG+AGG | - | chr7.1:29651953-29651972 | MS.gene87745:CDS | 40.0% |
| ! | TATGAAGGAGGTGGATTTAC+AGG | + | chr7.1:29652287-29652306 | None:intergenic | 40.0% |
| ! | TCTTCTCAAAAGTGTGAAGC+TGG | + | chr7.1:29654039-29654058 | None:intergenic | 40.0% |
| ! | TTAAGGTGATGTCTAAGGTG+GGG | + | chr7.1:29652084-29652103 | None:intergenic | 40.0% |
| !! | CACACTTTTGAGAAGAAGGT+TGG | - | chr7.1:29654043-29654062 | MS.gene87745:intron | 40.0% |
| !! | GCTTCACACTTTTGAGAAGA+AGG | - | chr7.1:29654039-29654058 | MS.gene87745:intron | 40.0% |
| !! | GTAGAATTTGTTGCTCTAGG+AGG | + | chr7.1:29654844-29654863 | None:intergenic | 40.0% |
| !!! | AGCAGTTTTAGGTATGAAGG+AGG | + | chr7.1:29652299-29652318 | None:intergenic | 40.0% |
| !!! | AGTTTTAGGTATGAAGGAGG+TGG | + | chr7.1:29652296-29652315 | None:intergenic | 40.0% |
| !!! | GACAACCATTTTTCAAGGTC+CGG | + | chr7.1:29654904-29654923 | None:intergenic | 40.0% |
| AATAGACAGTATTCCCCCCT+TGG | - | chr7.1:29652528-29652547 | MS.gene87745:intron | 45.0% | |
| ACAAACACCAACGCTAGACA+CGG | + | chr7.1:29654263-29654282 | None:intergenic | 45.0% | |
| ACAGCTCTGTCATAACATGG+TGG | + | chr7.1:29652654-29652673 | None:intergenic | 45.0% | |
| AGGTGGGGTAGTATCTTGTA+CGG | + | chr7.1:29652069-29652088 | None:intergenic | 45.0% | |
| ATAATTGGCAGACCGAACCT+AGG | - | chr7.1:29653401-29653420 | MS.gene87745:intron | 45.0% | |
| ATCAGCCTTCTGCAAATGCA+AGG | + | chr7.1:29651590-29651609 | None:intergenic | 45.0% | |
| ATTATGAGCTTCTGCGTACG+AGG | - | chr7.1:29651985-29652004 | MS.gene87745:intron | 45.0% | |
| CACTGACACATGTCGGATAT+TGG | + | chr7.1:29654158-29654177 | None:intergenic | 45.0% | |
| CCCTACTAAGATTTCCTCCT+AGG | + | chr7.1:29653421-29653440 | None:intergenic | 45.0% | |
| GAGAGTGACTCAATCAGTGT+TGG | + | chr7.1:29651873-29651892 | None:intergenic | 45.0% | |
| GCACTTCAGTGGACAAGTTT+GGG | - | chr7.1:29654757-29654776 | MS.gene87745:intron | 45.0% | |
| GCCTGGAGATTTCTGCAATA+AGG | - | chr7.1:29654418-29654437 | MS.gene87745:intron | 45.0% | |
| GCTCCTCCTTCAAATTCTCT+CGG | - | chr7.1:29651672-29651691 | MS.gene87745:intron | 45.0% | |
| TATCCGACATGTGTCAGTGT+CGG | - | chr7.1:29654159-29654178 | MS.gene87745:intron | 45.0% | |
| TGCACTTCAGTGGACAAGTT+TGG | - | chr7.1:29654756-29654775 | MS.gene87745:intron | 45.0% | |
| TGTACAGTGCATCAACTTGG+TGG | - | chr7.1:29654352-29654371 | MS.gene87745:intron | 45.0% | |
| TTGCAGCAATGATGCTCCAA+GGG | + | chr7.1:29651198-29651217 | None:intergenic | 45.0% | |
| TTTGCAGCAATGATGCTCCA+AGG | + | chr7.1:29651199-29651218 | None:intergenic | 45.0% | |
| ! | GCAGTGGCAGAGATCAATTT+TGG | - | chr7.1:29653371-29653390 | MS.gene87745:intron | 45.0% |
| ! | TGCACAGGTTTGTTTGTCGA+TGG | + | chr7.1:29652443-29652462 | None:intergenic | 45.0% |
| ! | TGTGGTACTAGGTTTTGCTC+TGG | - | chr7.1:29651147-29651166 | MS.gene87745:CDS | 45.0% |
| !! | TCTGTCATAACATGGTGGAC+AGG | + | chr7.1:29652649-29652668 | None:intergenic | 45.0% |
| !! | TGTTCTAGAGTATGGTCCCT+TGG | - | chr7.1:29655031-29655050 | MS.gene87745:intron | 45.0% |
| AGATGTGTGCGCACTTTGTG+AGG | - | chr7.1:29653931-29653950 | MS.gene87745:intron | 50.0% | |
| AGTGGACAAGTTTGGGAGCA+AGG | - | chr7.1:29654764-29654783 | MS.gene87745:intron | 50.0% | |
| CAAGAGGACTTGCAAACCCT+TGG | - | chr7.1:29651179-29651198 | MS.gene87745:CDS | 50.0% | |
| CACTGTCCTCACACAGTGAT+GGG | + | chr7.1:29652475-29652494 | None:intergenic | 50.0% | |
| CGTGCGACTAGAAAGGTCTA+AGG | + | chr7.1:29651626-29651645 | None:intergenic | 50.0% | |
| GAAATCTCCAGGCTGAACTG+AGG | + | chr7.1:29654411-29654430 | None:intergenic | 50.0% | |
| GAAATGACCTCAGTTCAGCC+TGG | - | chr7.1:29654401-29654420 | MS.gene87745:intron | 50.0% | |
| TCACAAAGTGCGCACACATC+TGG | + | chr7.1:29653932-29653951 | None:intergenic | 50.0% | |
| TCATGCTATGGTGAGGTCCA+TGG | - | chr7.1:29651524-29651543 | MS.gene87745:intron | 50.0% | |
| TGCCGAAGCCCATACTCTTA+TGG | + | chr7.1:29651913-29651932 | None:intergenic | 50.0% | |
| TGTCCGACACTGACACATGT+CGG | + | chr7.1:29654165-29654184 | None:intergenic | 50.0% | |
| TTGACGTGCCAGTGCTACAT+AGG | + | chr7.1:29654124-29654143 | None:intergenic | 50.0% | |
| ! | GCTGAAAGTGTGCACTTCAG+TGG | - | chr7.1:29654746-29654765 | MS.gene87745:intron | 50.0% |
| AGTATGGGCTTCGGCATACG+AGG | - | chr7.1:29651917-29651936 | MS.gene87745:CDS | 55.0% | |
| ATCAGTGCCGTGTCTAGCGT+TGG | - | chr7.1:29654253-29654272 | MS.gene87745:intron | 55.0% | |
| ATTGGCAGACCGAACCTAGG+AGG | - | chr7.1:29653404-29653423 | MS.gene87745:intron | 55.0% | |
| GCACTGTCCTCACACAGTGA+TGG | + | chr7.1:29652476-29652495 | None:intergenic | 55.0% | |
| GCTGCAAACTCAGCCTCTTC+TGG | - | chr7.1:29651211-29651230 | MS.gene87745:CDS | 55.0% | |
| ! | GCTCTGGCTTGTGATGCAAG+AGG | - | chr7.1:29651163-29651182 | MS.gene87745:CDS | 55.0% |
| ! | TGTCCTCACACAGTGATGGG+TGG | + | chr7.1:29652472-29652491 | None:intergenic | 55.0% |
| GATGGGTGGCCAAAGTGCAC+AGG | + | chr7.1:29652458-29652477 | None:intergenic | 60.0% | |
| TGGCCACCCATCACTGTGTG+AGG | - | chr7.1:29652466-29652485 | MS.gene87745:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 29651118 | 29655229 | 29651118 | ID=MS.gene87745 |
| chr7.1 | mRNA | 29651118 | 29655229 | 29651118 | ID=MS.gene87745.t1;Parent=MS.gene87745 |
| chr7.1 | exon | 29655115 | 29655229 | 29655115 | ID=MS.gene87745.t1.exon1;Parent=MS.gene87745.t1 |
| chr7.1 | CDS | 29655115 | 29655229 | 29655115 | ID=cds.MS.gene87745.t1;Parent=MS.gene87745.t1 |
| chr7.1 | exon | 29652287 | 29652432 | 29652287 | ID=MS.gene87745.t1.exon2;Parent=MS.gene87745.t1 |
| chr7.1 | CDS | 29652287 | 29652432 | 29652287 | ID=cds.MS.gene87745.t1;Parent=MS.gene87745.t1 |
| chr7.1 | exon | 29651791 | 29651988 | 29651791 | ID=MS.gene87745.t1.exon3;Parent=MS.gene87745.t1 |
| chr7.1 | CDS | 29651791 | 29651988 | 29651791 | ID=cds.MS.gene87745.t1;Parent=MS.gene87745.t1 |
| chr7.1 | exon | 29651562 | 29651621 | 29651562 | ID=MS.gene87745.t1.exon4;Parent=MS.gene87745.t1 |
| chr7.1 | CDS | 29651562 | 29651621 | 29651562 | ID=cds.MS.gene87745.t1;Parent=MS.gene87745.t1 |
| chr7.1 | exon | 29651118 | 29651327 | 29651118 | ID=MS.gene87745.t1.exon5;Parent=MS.gene87745.t1 |
| chr7.1 | CDS | 29651118 | 29651327 | 29651118 | ID=cds.MS.gene87745.t1;Parent=MS.gene87745.t1 |
| Gene Sequence |
| Protein sequence |
