Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88018.t1 | XP_013455212.1 | 97.4 | 508 | 13 | 0 | 1 | 508 | 1 | 508 | 1.80E-280 | 974.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88018.t1 | Q9SA38 | 48.6 | 498 | 245 | 6 | 15 | 503 | 14 | 509 | 3.1e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88018.t1 | A0A072UJG0 | 97.4 | 508 | 13 | 0 | 1 | 508 | 1 | 508 | 1.3e-280 | 974.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059837 | MS.gene88018 | -0.818619 | 1.78E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88018.t1 | MTR_4g030040 | 97.441 | 508 | 13 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1018 |
| MS.gene88018.t1 | MTR_4g030040 | 95.285 | 509 | 23 | 1 | 1 | 508 | 1 | 509 | 0.0 | 988 |
| MS.gene88018.t1 | MTR_4g030210 | 82.353 | 510 | 83 | 2 | 1 | 504 | 1 | 509 | 0.0 | 847 |
| MS.gene88018.t1 | MTR_8g039190 | 70.916 | 502 | 139 | 3 | 6 | 504 | 11 | 508 | 0.0 | 721 |
| MS.gene88018.t1 | MTR_5g080050 | 67.319 | 511 | 160 | 2 | 1 | 504 | 1 | 511 | 0.0 | 680 |
| MS.gene88018.t1 | MTR_5g082760 | 65.953 | 514 | 160 | 3 | 6 | 504 | 8 | 521 | 0.0 | 662 |
| MS.gene88018.t1 | MTR_8g039070 | 63.745 | 502 | 142 | 4 | 6 | 504 | 8 | 472 | 0.0 | 626 |
| MS.gene88018.t1 | MTR_8g447340 | 44.747 | 514 | 267 | 6 | 10 | 507 | 9 | 521 | 7.76e-166 | 479 |
| MS.gene88018.t1 | MTR_2g081930 | 31.323 | 514 | 327 | 8 | 7 | 501 | 17 | 523 | 1.43e-80 | 261 |
| MS.gene88018.t1 | MTR_4g120720 | 38.206 | 301 | 146 | 7 | 77 | 371 | 2 | 268 | 1.75e-56 | 189 |
| MS.gene88018.t1 | MTR_2g081950 | 31.008 | 387 | 243 | 6 | 129 | 496 | 19 | 400 | 1.10e-46 | 167 |
| MS.gene88018.t1 | MTR_4g081490 | 29.457 | 387 | 260 | 6 | 129 | 507 | 66 | 447 | 8.96e-46 | 166 |
| MS.gene88018.t1 | MTR_2g081960 | 34.862 | 109 | 71 | 0 | 25 | 133 | 32 | 140 | 5.97e-20 | 86.7 |
| MS.gene88018.t1 | MTR_4g081480 | 32.283 | 127 | 79 | 3 | 7 | 129 | 21 | 144 | 3.63e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88018.t1 | AT1G16390 | 48.594 | 498 | 245 | 6 | 15 | 503 | 14 | 509 | 6.61e-175 | 503 |
| MS.gene88018.t1 | AT1G79360 | 47.400 | 500 | 248 | 6 | 23 | 507 | 19 | 518 | 8.22e-171 | 493 |
| MS.gene88018.t1 | AT1G79410 | 43.168 | 505 | 275 | 8 | 7 | 505 | 9 | 507 | 1.29e-137 | 407 |
| MS.gene88018.t1 | AT1G16370 | 42.536 | 489 | 267 | 7 | 25 | 505 | 31 | 513 | 4.82e-137 | 406 |
| MS.gene88018.t1 | AT1G73220 | 35.465 | 516 | 317 | 6 | 2 | 507 | 23 | 532 | 9.57e-105 | 324 |
| MS.gene88018.t1 | AT3G20660 | 29.762 | 504 | 331 | 11 | 4 | 497 | 17 | 507 | 8.20e-71 | 235 |
| MS.gene88018.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 3 | 174 | 1.64e-12 | 70.5 |
| MS.gene88018.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 53 | 224 | 2.07e-12 | 70.1 |
| MS.gene88018.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 127 | 292 | 53 | 224 | 2.15e-12 | 70.1 |
| MS.gene88018.t1 | AT1G34580 | 23.990 | 421 | 271 | 18 | 120 | 504 | 37 | 444 | 2.04e-11 | 66.6 |
| MS.gene88018.t1 | AT1G34580 | 23.990 | 421 | 271 | 18 | 120 | 504 | 87 | 494 | 3.06e-11 | 66.2 |
| MS.gene88018.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 141 | 292 | 68 | 222 | 7.92e-11 | 65.1 |
| MS.gene88018.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 141 | 292 | 68 | 222 | 7.92e-11 | 65.1 |
Find 96 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGGAATGGTCTATTT+TGG | 0.169180 | 4.3:-69861648 | MS.gene88018:CDS |
| CGTGGAAATCGGTGTATATT+TGG | 0.206428 | 4.3:-69861947 | MS.gene88018:CDS |
| GAATATTTCTGCTTCACATT+AGG | 0.262371 | 4.3:-69862014 | MS.gene88018:CDS |
| AATATTTCTGCTTCACATTA+GGG | 0.272078 | 4.3:-69862013 | MS.gene88018:CDS |
| ATGATTCTTGGTATTGGAAT+TGG | 0.282787 | 4.3:-69861663 | MS.gene88018:CDS |
| TGTTACATTGCTCGGTTTGC+CGG | 0.286045 | 4.3:-69861199 | MS.gene88018:CDS |
| GAAAGGGGTTTAGGAAGATT+TGG | 0.291856 | 4.3:-69862551 | MS.gene88018:CDS |
| CCTCCCAGCAGATATCAAAA+AGG | 0.297351 | 4.3:+69861275 | None:intergenic |
| TTGTGTGGCTACTTATTTCT+TGG | 0.297902 | 4.3:-69861547 | MS.gene88018:CDS |
| GAAGCTATGGCAATGCTTAA+AGG | 0.298486 | 4.3:-69861834 | MS.gene88018:CDS |
| TCCCATGACCATGAAGATTT+AGG | 0.314784 | 4.3:+69862377 | None:intergenic |
| TCGTCGATTGCAGAGTTGTT+CGG | 0.319208 | 4.3:-69861720 | MS.gene88018:CDS |
| CCGCAATCTTCGTTCTTCAT+TGG | 0.331379 | 4.3:-69862284 | MS.gene88018:CDS |
| CCTTTAGCTGTTGGAAACTT+AGG | 0.335323 | 4.3:-69861621 | MS.gene88018:CDS |
| GCAAAATTCCTAAATCTTCA+TGG | 0.344934 | 4.3:-69862385 | MS.gene88018:CDS |
| GAAATGATGGAAAGGGGTTT+AGG | 0.347800 | 4.3:-69862560 | MS.gene88018:CDS |
| GCCATCGATTCTTGTATTCT+CGG | 0.352206 | 4.3:-69861508 | MS.gene88018:CDS |
| CGTCGATTGCAGAGTTGTTC+GGG | 0.365612 | 4.3:-69861719 | MS.gene88018:CDS |
| TGTATAATGTGTGTTATTGT+TGG | 0.371116 | 4.3:-69861468 | MS.gene88018:CDS |
| TTCTCTCATGGCGGCTATAG+AGG | 0.389503 | 4.3:-69863364 | None:intergenic |
| TCCATCATTTCATCTGTTGA+AGG | 0.402045 | 4.3:+69862572 | None:intergenic |
| CAGAGTTGTTCGGGAGAAGT+TGG | 0.405119 | 4.3:-69861710 | MS.gene88018:CDS |
| TAGATATAATTCGTGGAAAT+CGG | 0.408726 | 4.3:-69861958 | MS.gene88018:CDS |
| ATATACCTCGGAAGAAGCTT+GGG | 0.417250 | 4.3:+69863323 | None:intergenic |
| GCGGTAATGATTCTTGGTAT+TGG | 0.418880 | 4.3:-69861669 | MS.gene88018:CDS |
| GATTTGTGCAATGCCATGTT+TGG | 0.422981 | 4.3:+69862438 | None:intergenic |
| ATGGTGGCGGTAATGATTCT+TGG | 0.425429 | 4.3:-69861675 | MS.gene88018:CDS |
| ATGATTGAGTAAATAATTGC+AGG | 0.429182 | 4.3:+69861915 | None:intergenic |
| TTTCTTCTCTTGTTGATCCA+TGG | 0.431898 | 4.3:+69861149 | None:intergenic |
| TTTGGAATGCCTTTAGCTGT+TGG | 0.437641 | 4.3:-69861630 | MS.gene88018:CDS |
| TTCCTAAATCTTCATGGTCA+TGG | 0.439320 | 4.3:-69862379 | MS.gene88018:CDS |
| CCGAGTGGAGGTTCACTGTT+GGG | 0.441877 | 4.3:-69862043 | MS.gene88018:CDS |
| TATATACCTCGGAAGAAGCT+TGG | 0.445381 | 4.3:+69863322 | None:intergenic |
| AACAGATGAAATGATGGAAA+GGG | 0.447149 | 4.3:-69862567 | MS.gene88018:CDS |
| TTGTCTTGTGTTACATTGCT+CGG | 0.450359 | 4.3:-69861207 | MS.gene88018:CDS |
| ATCGGGACAACAAGGAATTA+AGG | 0.453209 | 4.3:-69861445 | MS.gene88018:CDS |
| AGAGTTGTTCGGGAGAAGTT+GGG | 0.457783 | 4.3:-69861709 | MS.gene88018:CDS |
| CAAGAATCGATGGCTTTCTT+CGG | 0.466730 | 4.3:+69861517 | None:intergenic |
| TTTAGCTCTTTCTGATACCA+TGG | 0.469057 | 4.3:-69861166 | MS.gene88018:CDS |
| TATTTGGCTGTTGTGTTCAA+CGG | 0.483478 | 4.3:-69861588 | MS.gene88018:CDS |
| CTGCAATCGACGAGTAAAGT+TGG | 0.485010 | 4.3:+69861730 | None:intergenic |
| ATCTTAATAGATATAATTCG+TGG | 0.492171 | 4.3:-69861965 | MS.gene88018:CDS |
| CTTGCATTAGAAGCCATCTC+GGG | 0.492815 | 4.3:+69861868 | None:intergenic |
| CTCGGAAGAAGCTTGGGGTA+TGG | 0.496504 | 4.3:+69863329 | None:intergenic |
| CCTTGCATTAGAAGCCATCT+CGG | 0.501206 | 4.3:+69861867 | None:intergenic |
| CCTAAGTTTCCAACAGCTAA+AGG | 0.503723 | 4.3:+69861621 | None:intergenic |
| GTAGTGTTTCTCACACTTGT+TGG | 0.504323 | 4.3:+69861345 | None:intergenic |
| ATGTGTGTTATTGTTGGATC+GGG | 0.504656 | 4.3:-69861462 | MS.gene88018:CDS |
| TCCTAAATCTTCATGGTCAT+GGG | 0.507054 | 4.3:-69862378 | MS.gene88018:CDS |
| GAGAAACACTACAACATCAT+TGG | 0.509406 | 4.3:-69861334 | MS.gene88018:CDS |
| TGTTGTGTTCAACGGTTTGA+TGG | 0.510463 | 4.3:-69861580 | MS.gene88018:CDS |
| TCCTTCAACAGATGAAATGA+TGG | 0.510742 | 4.3:-69862573 | MS.gene88018:CDS |
| TTAGGGTATGTGTCATTGCC+TGG | 0.518083 | 4.3:-69861996 | MS.gene88018:CDS |
| GAAGCTTGGGGTATGGAAGA+AGG | 0.522165 | 4.3:+69863336 | None:intergenic |
| GAATCTGATGCACATGTGGT+TGG | 0.527396 | 4.3:+69862416 | None:intergenic |
| GGGTTTAGGAAGATTTGGTT+GGG | 0.532129 | 4.3:-69862546 | MS.gene88018:CDS |
| GGGGTTTAGGAAGATTTGGT+TGG | 0.533651 | 4.3:-69862547 | MS.gene88018:CDS |
| CTCGGTTTGCCGGAGTCAAG+AGG | 0.535857 | 4.3:-69861189 | MS.gene88018:CDS |
| CTAGAAGAAACGAACCGAAA+AGG | 0.540466 | 4.3:+69862258 | None:intergenic |
| AGCCCCGGTGAATAAACAAA+AGG | 0.542980 | 4.3:-69861763 | MS.gene88018:CDS |
| AATGTGTGTTATTGTTGGAT+CGG | 0.549320 | 4.3:-69861463 | MS.gene88018:CDS |
| CTTGTATTCTCGGTAGCTAG+TGG | 0.549620 | 4.3:-69861498 | MS.gene88018:CDS |
| CAACAGATGAAATGATGGAA+AGG | 0.550084 | 4.3:-69862568 | MS.gene88018:CDS |
| ACAAAACAGTGATATCTCAA+TGG | 0.553373 | 4.3:-69862343 | MS.gene88018:CDS |
| GACAACAAGGAATTAAGGTC+GGG | 0.563112 | 4.3:-69861440 | MS.gene88018:CDS |
| CTATTAAGATAAGCTATACC+AGG | 0.565268 | 4.3:+69861978 | None:intergenic |
| TCTTGGTATTGGAATTGGAA+TGG | 0.570043 | 4.3:-69861658 | MS.gene88018:CDS |
| AAGTTGGGCTCTAAAGAGAA+TGG | 0.572157 | 4.3:-69861694 | MS.gene88018:CDS |
| GGCTCTAAAGAGAATGGTGG+CGG | 0.573774 | 4.3:-69861688 | MS.gene88018:CDS |
| AGGACGACATCAAGAAGCTA+TGG | 0.579332 | 4.3:-69861847 | MS.gene88018:CDS |
| ACTTTAGCTGATACTTCACT+TGG | 0.579518 | 4.3:-69862233 | MS.gene88018:CDS |
| AGTAAGTTTAATAGAAGCCC+CGG | 0.581651 | 4.3:-69861778 | MS.gene88018:CDS |
| ACCGAGTGGAGGTTCACTGT+TGG | 0.582904 | 4.3:-69862044 | MS.gene88018:CDS |
| AAATCTTCATGGTCATGGGA+TGG | 0.585898 | 4.3:-69862374 | MS.gene88018:CDS |
| AACAGAATAAATCCAAACAT+TGG | 0.591278 | 4.3:+69862142 | None:intergenic |
| GATGGAAGTACCGTCTTGTG+TGG | 0.593579 | 4.3:-69861562 | MS.gene88018:CDS |
| TTGTTACTGAGTCCCCGAGA+TGG | 0.595109 | 4.3:-69861881 | MS.gene88018:CDS |
| ACAGATGAAATGATGGAAAG+GGG | 0.595316 | 4.3:-69862566 | MS.gene88018:CDS |
| ATCGGTGTATATTTGGACAT+CGG | 0.596172 | 4.3:-69861940 | MS.gene88018:CDS |
| ACCGAGAATACAAGAATCGA+TGG | 0.601771 | 4.3:+69861507 | None:intergenic |
| GGACAACAAGGAATTAAGGT+CGG | 0.602421 | 4.3:-69861441 | MS.gene88018:CDS |
| AGAGCTAAACCTCTTGACTC+CGG | 0.611850 | 4.3:+69861180 | None:intergenic |
| ATTGTTGGATCGGGACAACA+AGG | 0.619158 | 4.3:-69861453 | MS.gene88018:CDS |
| CCGAGATGGCTTCTAATGCA+AGG | 0.623082 | 4.3:-69861867 | MS.gene88018:CDS |
| ATGCCATGTTTGGTATTCGT+CGG | 0.629753 | 4.3:+69862448 | None:intergenic |
| AAATAAGTAGCCACACAAGA+CGG | 0.630270 | 4.3:+69861552 | None:intergenic |
| CATACCCCAAGCTTCTTCCG+AGG | 0.637475 | 4.3:-69863328 | MS.gene88018:intron |
| ACACCGACGAATACCAAACA+TGG | 0.647674 | 4.3:-69862451 | MS.gene88018:CDS |
| CCCAACAGTGAACCTCCACT+CGG | 0.649161 | 4.3:+69862043 | None:intergenic |
| TTGCATTAGAAGCCATCTCG+GGG | 0.669568 | 4.3:+69861869 | None:intergenic |
| CTGAGAAAGTTAGTACCGAG+TGG | 0.671581 | 4.3:-69862058 | MS.gene88018:CDS |
| GTTAGAATCTGATGCACATG+TGG | 0.675405 | 4.3:+69862412 | None:intergenic |
| TATACCTCGGAAGAAGCTTG+GGG | 0.677450 | 4.3:+69863324 | None:intergenic |
| TTGGGCTCTAAAGAGAATGG+TGG | 0.689893 | 4.3:-69861691 | MS.gene88018:CDS |
| AGAAAGTTAGTACCGAGTGG+AGG | 0.706492 | 4.3:-69862055 | MS.gene88018:CDS |
| CCAATGAAGAACGAAGATTG+CGG | 0.713248 | 4.3:+69862284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAGATTAAATATAAATAAAT+AGG | + | chr4.3:69861705-69861724 | None:intergenic | 10.0% |
| !! | CCAAAATAATTATATAAAAC+TGG | - | chr4.3:69861610-69861629 | MS.gene88018:CDS | 15.0% |
| !!! | ATTTTAATAGCAATTAGAAA+TGG | - | chr4.3:69861831-69861850 | MS.gene88018:CDS | 15.0% |
| !!! | CCAGTTTTATATAATTATTT+TGG | + | chr4.3:69861613-69861632 | None:intergenic | 15.0% |
| !!! | GGTTTGTTTATATATAATTA+GGG | + | chr4.3:69861367-69861386 | None:intergenic | 15.0% |
| !!! | TGGTTTGTTTATATATAATT+AGG | + | chr4.3:69861368-69861387 | None:intergenic | 15.0% |
| !! | AAAACTAAAAAATTCAATCC+TGG | + | chr4.3:69861668-69861687 | None:intergenic | 20.0% |
| !! | ATCTTAATAGATATAATTCG+TGG | - | chr4.3:69862523-69862542 | MS.gene88018:CDS | 20.0% |
| !! | GAATTAGAATTAGTTGAAAT+TGG | + | chr4.3:69861874-69861893 | None:intergenic | 20.0% |
| !! | TAATTAAGATGATAAAGTGA+CGG | + | chr4.3:69861343-69861362 | None:intergenic | 20.0% |
| !! | TGCTTTCAATTGAATAATAA+AGG | + | chr4.3:69861771-69861790 | None:intergenic | 20.0% |
| !!! | AAAAATGACATTTTCTCTTA+TGG | - | chr4.3:69863236-69863255 | MS.gene88018:intron | 20.0% |
| !!! | CTGTTTTTAAATTCTTGATT+GGG | - | chr4.3:69862364-69862383 | MS.gene88018:CDS | 20.0% |
| !!! | TCTGTTTTTAAATTCTTGAT+TGG | - | chr4.3:69862363-69862382 | MS.gene88018:CDS | 20.0% |
| ! | AACAGAATAAATCCAAACAT+TGG | + | chr4.3:69862349-69862368 | None:intergenic | 25.0% |
| ! | AATAGTAATAGCAATAGCAT+AGG | - | chr4.3:69861796-69861815 | MS.gene88018:CDS | 25.0% |
| ! | ATCAAAGTCAAACAAAAACT+TGG | + | chr4.3:69861506-69861525 | None:intergenic | 25.0% |
| ! | ATGATTGAGTAAATAATTGC+AGG | + | chr4.3:69862576-69862595 | None:intergenic | 25.0% |
| ! | CAATTGAATAATAAAGGCAA+AGG | + | chr4.3:69861765-69861784 | None:intergenic | 25.0% |
| ! | GTTTATGTTTGTATATACCT+CGG | + | chr4.3:69861180-69861199 | None:intergenic | 25.0% |
| ! | TAATTCTAATTCTATTGAGC+AGG | - | chr4.3:69861882-69861901 | MS.gene88018:CDS | 25.0% |
| ! | TAGATATAATTCGTGGAAAT+CGG | - | chr4.3:69862530-69862549 | MS.gene88018:CDS | 25.0% |
| ! | TATAAACAAACCAAAAGTCT+TGG | - | chr4.3:69861375-69861394 | MS.gene88018:CDS | 25.0% |
| ! | TCACTACTATCAAAATCATT+TGG | - | chr4.3:69861267-69861286 | MS.gene88018:CDS | 25.0% |
| !! | AATATTTCTGCTTCACATTA+GGG | - | chr4.3:69862475-69862494 | MS.gene88018:CDS | 25.0% |
| !! | TGTATAATGTGTGTTATTGT+TGG | - | chr4.3:69863020-69863039 | MS.gene88018:intron | 25.0% |
| !!! | CTTAGGTTTTGACATTTATT+TGG | - | chr4.3:69862884-69862903 | MS.gene88018:intron | 25.0% |
| ACAAAACAGTGATATCTCAA+TGG | - | chr4.3:69862145-69862164 | MS.gene88018:CDS | 30.0% | |
| ATAGCAATTAGAAATGGCAT+TGG | - | chr4.3:69861837-69861856 | MS.gene88018:CDS | 30.0% | |
| CTATTAAGATAAGCTATACC+AGG | + | chr4.3:69862513-69862532 | None:intergenic | 30.0% | |
| GCAAAATTCCTAAATCTTCA+TGG | - | chr4.3:69862103-69862122 | MS.gene88018:CDS | 30.0% | |
| ! | AACAGATGAAATGATGGAAA+GGG | - | chr4.3:69861921-69861940 | MS.gene88018:CDS | 30.0% |
| ! | AATGTGTGTTATTGTTGGAT+CGG | - | chr4.3:69863025-69863044 | MS.gene88018:intron | 30.0% |
| ! | ATGATTCTTGGTATTGGAAT+TGG | - | chr4.3:69862825-69862844 | MS.gene88018:intron | 30.0% |
| ! | GAATATTTCTGCTTCACATT+AGG | - | chr4.3:69862474-69862493 | MS.gene88018:CDS | 30.0% |
| ! | TTGTTTTCTCTACCAATGTT+TGG | - | chr4.3:69862334-69862353 | MS.gene88018:CDS | 30.0% |
| AAATAAGTAGCCACACAAGA+CGG | + | chr4.3:69862939-69862958 | None:intergenic | 35.0% | |
| ACTTTAGCTGATACTTCACT+TGG | - | chr4.3:69862255-69862274 | MS.gene88018:CDS | 35.0% | |
| AGTAAGTTTAATAGAAGCCC+CGG | - | chr4.3:69862710-69862729 | MS.gene88018:intron | 35.0% | |
| ATCGGTGTATATTTGGACAT+CGG | - | chr4.3:69862548-69862567 | MS.gene88018:CDS | 35.0% | |
| GAGAAACACTACAACATCAT+TGG | - | chr4.3:69863154-69863173 | MS.gene88018:intron | 35.0% | |
| TATTTGGCTGTTGTGTTCAA+CGG | - | chr4.3:69862900-69862919 | MS.gene88018:intron | 35.0% | |
| TCCATCATTTCATCTGTTGA+AGG | + | chr4.3:69861919-69861938 | None:intergenic | 35.0% | |
| TCCTAAATCTTCATGGTCAT+GGG | - | chr4.3:69862110-69862129 | MS.gene88018:CDS | 35.0% | |
| TCCTTCAACAGATGAAATGA+TGG | - | chr4.3:69861915-69861934 | MS.gene88018:CDS | 35.0% | |
| TTCCTAAATCTTCATGGTCA+TGG | - | chr4.3:69862109-69862128 | MS.gene88018:CDS | 35.0% | |
| TTGTCTTGTGTTACATTGCT+CGG | - | chr4.3:69863281-69863300 | MS.gene88018:intron | 35.0% | |
| TTTCTTCTCTTGTTGATCCA+TGG | + | chr4.3:69863342-69863361 | None:intergenic | 35.0% | |
| ! | ACAGATGAAATGATGGAAAG+GGG | - | chr4.3:69861922-69861941 | MS.gene88018:CDS | 35.0% |
| ! | ATGTGTGTTATTGTTGGATC+GGG | - | chr4.3:69863026-69863045 | MS.gene88018:intron | 35.0% |
| ! | ATTTTCTCTTATGGCGTGTT+TGG | - | chr4.3:69863245-69863264 | MS.gene88018:intron | 35.0% |
| ! | CAACAGATGAAATGATGGAA+AGG | - | chr4.3:69861920-69861939 | MS.gene88018:CDS | 35.0% |
| ! | GGAATTGGAATGGTCTATTT+TGG | - | chr4.3:69862840-69862859 | MS.gene88018:intron | 35.0% |
| ! | GTGAGACAAGCTATTGTTTT+TGG | - | chr4.3:69863176-69863195 | MS.gene88018:intron | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | chr4.3:69862830-69862849 | MS.gene88018:intron | 35.0% |
| ! | TTGTGTGGCTACTTATTTCT+TGG | - | chr4.3:69862941-69862960 | MS.gene88018:intron | 35.0% |
| !! | AAGCCTTTTGTTTATTCACC+GGG | + | chr4.3:69862731-69862750 | None:intergenic | 35.0% |
| !! | GAAGCCTTTTGTTTATTCAC+CGG | + | chr4.3:69862732-69862751 | None:intergenic | 35.0% |
| !! | TTCTTCATTGGTTGCCTTTT+CGG | - | chr4.3:69862216-69862235 | MS.gene88018:CDS | 35.0% |
| !! | TTTAGCTCTTTCTGATACCA+TGG | - | chr4.3:69863322-69863341 | MS.gene88018:intron | 35.0% |
| !!! | TGTGCTAGTAGTTTTGTAAC+AGG | - | chr4.3:69862177-69862196 | MS.gene88018:CDS | 35.0% |
| AAATCTTCATGGTCATGGGA+TGG | - | chr4.3:69862114-69862133 | MS.gene88018:CDS | 40.0% | |
| AATAACAACGTGCACAAGCA+TGG | + | chr4.3:69861572-69861591 | None:intergenic | 40.0% | |
| ACCGAGAATACAAGAATCGA+TGG | + | chr4.3:69862984-69863003 | None:intergenic | 40.0% | |
| ATATACCTCGGAAGAAGCTT+GGG | + | chr4.3:69861168-69861187 | None:intergenic | 40.0% | |
| ATCGGGACAACAAGGAATTA+AGG | - | chr4.3:69863043-69863062 | MS.gene88018:intron | 40.0% | |
| ATGCCATGTTTGGTATTCGT+CGG | + | chr4.3:69862043-69862062 | None:intergenic | 40.0% | |
| CAAGAATCGATGGCTTTCTT+CGG | + | chr4.3:69862974-69862993 | None:intergenic | 40.0% | |
| CCAATGAAGAACGAAGATTG+CGG | + | chr4.3:69862207-69862226 | None:intergenic | 40.0% | |
| CCTAAGTTTCCAACAGCTAA+AGG | + | chr4.3:69862870-69862889 | None:intergenic | 40.0% | |
| CCTTTAGCTGTTGGAAACTT+AGG | - | chr4.3:69862867-69862886 | MS.gene88018:intron | 40.0% | |
| CGTGGAAATCGGTGTATATT+TGG | - | chr4.3:69862541-69862560 | MS.gene88018:CDS | 40.0% | |
| CTAGAAGAAACGAACCGAAA+AGG | + | chr4.3:69862233-69862252 | None:intergenic | 40.0% | |
| CTCCCAGCAGATATCAAAAA+GGG | + | chr4.3:69863215-69863234 | None:intergenic | 40.0% | |
| GAAAGGGGTTTAGGAAGATT+TGG | - | chr4.3:69861937-69861956 | MS.gene88018:CDS | 40.0% | |
| GAAGCTATGGCAATGCTTAA+AGG | - | chr4.3:69862654-69862673 | MS.gene88018:intron | 40.0% | |
| GACAACAAGGAATTAAGGTC+GGG | - | chr4.3:69863048-69863067 | MS.gene88018:intron | 40.0% | |
| GATTTGTGCAATGCCATGTT+TGG | + | chr4.3:69862053-69862072 | None:intergenic | 40.0% | |
| GCGGTAATGATTCTTGGTAT+TGG | - | chr4.3:69862819-69862838 | MS.gene88018:intron | 40.0% | |
| GGACAACAAGGAATTAAGGT+CGG | - | chr4.3:69863047-69863066 | MS.gene88018:intron | 40.0% | |
| GTAGTGTTTCTCACACTTGT+TGG | + | chr4.3:69863146-69863165 | None:intergenic | 40.0% | |
| GTTAGAATCTGATGCACATG+TGG | + | chr4.3:69862079-69862098 | None:intergenic | 40.0% | |
| TATATACCTCGGAAGAAGCT+TGG | + | chr4.3:69861169-69861188 | None:intergenic | 40.0% | |
| TCCCAGCAGATATCAAAAAG+GGG | + | chr4.3:69863214-69863233 | None:intergenic | 40.0% | |
| TCCCATGACCATGAAGATTT+AGG | + | chr4.3:69862114-69862133 | None:intergenic | 40.0% | |
| TGTTGTGTTCAACGGTTTGA+TGG | - | chr4.3:69862908-69862927 | MS.gene88018:intron | 40.0% | |
| TTCAATCCTGGCAACTACTA+TGG | + | chr4.3:69861656-69861675 | None:intergenic | 40.0% | |
| ! | AGCACTGAAAAACGATGTCA+TGG | + | chr4.3:69863078-69863097 | None:intergenic | 40.0% |
| ! | ATGCAACTAGCCAAGACTTT+TGG | + | chr4.3:69861388-69861407 | None:intergenic | 40.0% |
| ! | GAAATGATGGAAAGGGGTTT+AGG | - | chr4.3:69861928-69861947 | MS.gene88018:CDS | 40.0% |
| ! | GATATCACTGTTTTGTGTGC+TGG | + | chr4.3:69862141-69862160 | None:intergenic | 40.0% |
| ! | GGGTTTAGGAAGATTTGGTT+GGG | - | chr4.3:69861942-69861961 | MS.gene88018:CDS | 40.0% |
| ! | TTTGGAATGCCTTTAGCTGT+TGG | - | chr4.3:69862858-69862877 | MS.gene88018:intron | 40.0% |
| !! | AAGTTGGGCTCTAAAGAGAA+TGG | - | chr4.3:69862794-69862813 | MS.gene88018:intron | 40.0% |
| !! | AGCCTTTTGTTTATTCACCG+GGG | + | chr4.3:69862730-69862749 | None:intergenic | 40.0% |
| !! | GCCATCGATTCTTGTATTCT+CGG | - | chr4.3:69862980-69862999 | MS.gene88018:intron | 40.0% |
| ACACCGACGAATACCAAACA+TGG | - | chr4.3:69862037-69862056 | MS.gene88018:CDS | 45.0% | |
| AGAGCTAAACCTCTTGACTC+CGG | + | chr4.3:69863311-69863330 | None:intergenic | 45.0% | |
| AGAGTTGTTCGGGAGAAGTT+GGG | - | chr4.3:69862779-69862798 | MS.gene88018:intron | 45.0% | |
| AGCCCCGGTGAATAAACAAA+AGG | - | chr4.3:69862725-69862744 | MS.gene88018:intron | 45.0% | |
| AGGACGACATCAAGAAGCTA+TGG | - | chr4.3:69862641-69862660 | MS.gene88018:intron | 45.0% | |
| ATTGTTGGATCGGGACAACA+AGG | - | chr4.3:69863035-69863054 | MS.gene88018:intron | 45.0% | |
| CCGCAATCTTCGTTCTTCAT+TGG | - | chr4.3:69862204-69862223 | MS.gene88018:CDS | 45.0% | |
| CCTCCCAGCAGATATCAAAA+AGG | + | chr4.3:69863216-69863235 | None:intergenic | 45.0% | |
| CCTTGCATTAGAAGCCATCT+CGG | + | chr4.3:69862624-69862643 | None:intergenic | 45.0% | |
| CTGCAATCGACGAGTAAAGT+TGG | + | chr4.3:69862761-69862780 | None:intergenic | 45.0% | |
| CTTGCATTAGAAGCCATCTC+GGG | + | chr4.3:69862623-69862642 | None:intergenic | 45.0% | |
| CTTGTATTCTCGGTAGCTAG+TGG | - | chr4.3:69862990-69863009 | MS.gene88018:intron | 45.0% | |
| GAATCTGATGCACATGTGGT+TGG | + | chr4.3:69862075-69862094 | None:intergenic | 45.0% | |
| TATACCTCGGAAGAAGCTTG+GGG | + | chr4.3:69861167-69861186 | None:intergenic | 45.0% | |
| TCAATGCCATAGTAGTTGCC+AGG | - | chr4.3:69861647-69861666 | MS.gene88018:CDS | 45.0% | |
| TTGCATTAGAAGCCATCTCG+GGG | + | chr4.3:69862622-69862641 | None:intergenic | 45.0% | |
| ! | AGAAAGTTAGTACCGAGTGG+AGG | - | chr4.3:69862433-69862452 | MS.gene88018:CDS | 45.0% |
| ! | AGCCCCTTTTTGATATCTGC+TGG | - | chr4.3:69863209-69863228 | MS.gene88018:intron | 45.0% |
| ! | CCTTTTTGATATCTGCTGGG+AGG | - | chr4.3:69863213-69863232 | MS.gene88018:intron | 45.0% |
| ! | CTGAGAAAGTTAGTACCGAG+TGG | - | chr4.3:69862430-69862449 | MS.gene88018:CDS | 45.0% |
| ! | GCCCCTTTTTGATATCTGCT+GGG | - | chr4.3:69863210-69863229 | MS.gene88018:intron | 45.0% |
| ! | GGGGTTTAGGAAGATTTGGT+TGG | - | chr4.3:69861941-69861960 | MS.gene88018:CDS | 45.0% |
| ! | GGGTTTTTGCGTTCATCGAT+TGG | - | chr4.3:69862384-69862403 | MS.gene88018:CDS | 45.0% |
| ! | TCGTCGATTGCAGAGTTGTT+CGG | - | chr4.3:69862768-69862787 | MS.gene88018:intron | 45.0% |
| ! | TGTTACATTGCTCGGTTTGC+CGG | - | chr4.3:69863289-69863308 | MS.gene88018:intron | 45.0% |
| ! | TTAGGGTATGTGTCATTGCC+TGG | - | chr4.3:69862492-69862511 | MS.gene88018:CDS | 45.0% |
| !! | ATGGTGGCGGTAATGATTCT+TGG | - | chr4.3:69862813-69862832 | MS.gene88018:intron | 45.0% |
| !! | TTGGGCTCTAAAGAGAATGG+TGG | - | chr4.3:69862797-69862816 | MS.gene88018:intron | 45.0% |
| !! | AGATTAAATATAAATAAATA+GGG | + | chr4.3:69861704-69861723 | None:intergenic | 5.0% |
| CAGAGTTGTTCGGGAGAAGT+TGG | - | chr4.3:69862778-69862797 | MS.gene88018:intron | 50.0% | |
| CCGAGATGGCTTCTAATGCA+AGG | - | chr4.3:69862621-69862640 | MS.gene88018:intron | 50.0% | |
| GAAGCTTGGGGTATGGAAGA+AGG | + | chr4.3:69861155-69861174 | None:intergenic | 50.0% | |
| TTGTTACTGAGTCCCCGAGA+TGG | - | chr4.3:69862607-69862626 | MS.gene88018:intron | 50.0% | |
| ! | CGTCGATTGCAGAGTTGTTC+GGG | - | chr4.3:69862769-69862788 | MS.gene88018:intron | 50.0% |
| !! | GATGGAAGTACCGTCTTGTG+TGG | - | chr4.3:69862926-69862945 | MS.gene88018:intron | 50.0% |
| !! | GGCTCTAAAGAGAATGGTGG+CGG | - | chr4.3:69862800-69862819 | MS.gene88018:intron | 50.0% |
| ACCGAGTGGAGGTTCACTGT+TGG | - | chr4.3:69862444-69862463 | MS.gene88018:CDS | 55.0% | |
| CATACCCCAAGCTTCTTCCG+AGG | - | chr4.3:69861160-69861179 | MS.gene88018:CDS | 55.0% | |
| CCCAACAGTGAACCTCCACT+CGG | + | chr4.3:69862448-69862467 | None:intergenic | 55.0% | |
| CCGAGTGGAGGTTCACTGTT+GGG | - | chr4.3:69862445-69862464 | MS.gene88018:CDS | 55.0% | |
| CTCGGAAGAAGCTTGGGGTA+TGG | + | chr4.3:69861162-69861181 | None:intergenic | 55.0% | |
| ! | CTCGGTTTGCCGGAGTCAAG+AGG | - | chr4.3:69863299-69863318 | MS.gene88018:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 69861131 | 69863379 | 69861131 | ID=MS.gene88018 |
| chr4.3 | mRNA | 69861131 | 69863379 | 69861131 | ID=MS.gene88018.t1;Parent=MS.gene88018 |
| chr4.3 | exon | 69863329 | 69863379 | 69863329 | ID=MS.gene88018.t1.exon1;Parent=MS.gene88018.t1 |
| chr4.3 | CDS | 69863329 | 69863379 | 69863329 | ID=cds.MS.gene88018.t1;Parent=MS.gene88018.t1 |
| chr4.3 | exon | 69861131 | 69862606 | 69861131 | ID=MS.gene88018.t1.exon2;Parent=MS.gene88018.t1 |
| chr4.3 | CDS | 69861131 | 69862606 | 69861131 | ID=cds.MS.gene88018.t1;Parent=MS.gene88018.t1 |
| Gene Sequence |
| Protein sequence |
