Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88158.t1 | PNX73002.1 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 7.70E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88158.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88158.t1 | A0A2K3L384 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 5.5e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88158.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060268 | MS.gene88158 | 0.807428 | 5.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88158.t1 | MTR_3g080590 | 87.742 | 155 | 19 | 0 | 1 | 155 | 1 | 155 | 1.30e-79 | 252 |
| MS.gene88158.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.07e-44 | 164 |
| MS.gene88158.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.20e-35 | 131 |
| MS.gene88158.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.32e-31 | 126 |
| MS.gene88158.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 3.91e-30 | 125 |
| MS.gene88158.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 6.56e-29 | 119 |
| MS.gene88158.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 6.14e-21 | 98.2 |
| MS.gene88158.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.34e-20 | 93.2 |
| MS.gene88158.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 4.41e-18 | 85.1 |
| MS.gene88158.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.34e-16 | 75.5 |
| MS.gene88158.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.09e-13 | 67.4 |
| MS.gene88158.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.10e-13 | 73.2 |
| MS.gene88158.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 6.06e-13 | 71.6 |
| MS.gene88158.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.65e-12 | 70.9 |
| MS.gene88158.t1 | MTR_6g051425 | 27.717 | 184 | 122 | 5 | 112 | 287 | 24 | 204 | 1.25e-11 | 67.4 |
| MS.gene88158.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 5.81e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88158.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 4.15e-19 | 92.4 |
| MS.gene88158.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 4.33e-19 | 92.4 |
| MS.gene88158.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.15e-19 | 92.4 |
| MS.gene88158.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.38e-19 | 92.4 |
| MS.gene88158.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.38e-19 | 92.4 |
| MS.gene88158.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.78e-18 | 90.9 |
| MS.gene88158.t1 | AT4G38180 | 31.203 | 266 | 161 | 10 | 40 | 290 | 4 | 262 | 2.28e-15 | 80.9 |
| MS.gene88158.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.54e-18 | 89.7 |
| MS.gene88158.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.54e-18 | 89.7 |
| MS.gene88158.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.54e-18 | 89.7 |
| MS.gene88158.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.54e-18 | 89.7 |
| MS.gene88158.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.54e-18 | 89.7 |
| MS.gene88158.t1 | AT3G22170 | 27.232 | 224 | 152 | 5 | 288 | 508 | 461 | 676 | 4.90e-16 | 83.2 |
| MS.gene88158.t1 | AT3G22170 | 27.232 | 224 | 152 | 5 | 288 | 508 | 461 | 676 | 4.90e-16 | 83.2 |
| MS.gene88158.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 1.96e-15 | 81.3 |
| MS.gene88158.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 1.96e-15 | 81.3 |
| MS.gene88158.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 2.14e-15 | 80.9 |
| MS.gene88158.t1 | AT4G38170 | 25.573 | 262 | 169 | 7 | 260 | 508 | 210 | 458 | 2.19e-15 | 80.5 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.19e-12 | 69.3 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.19e-12 | 69.3 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.12e-11 | 68.9 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.19e-11 | 68.9 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.19e-11 | 68.9 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.24e-11 | 68.9 |
| MS.gene88158.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.36e-11 | 68.6 |
| MS.gene88158.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.57e-11 | 67.4 |
| MS.gene88158.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.70e-11 | 67.4 |
| MS.gene88158.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.70e-11 | 67.4 |
| MS.gene88158.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 8.93e-11 | 65.9 |
Find 144 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 4.3:-68806857 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 4.3:-68806620 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 4.3:-68805831 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 4.3:-68804532 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 4.3:-68807132 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 4.3:-68804540 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 4.3:-68806084 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 4.3:-68806808 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 4.3:+68804648 | MS.gene88158:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 4.3:-68806904 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 4.3:-68804642 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 4.3:+68804195 | MS.gene88158:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 4.3:+68804443 | MS.gene88158:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 4.3:-68806239 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 4.3:+68804188 | MS.gene88158:CDS |
| GATTTATAGTCTGTGTAATA+AGG | 0.368713 | 4.3:+68806019 | MS.gene88158:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 4.3:-68806953 | None:intergenic |
| TAGAACAACATCTTGTCCTT+GGG | 0.371808 | 4.3:-68806181 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 4.3:+68805983 | MS.gene88158:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 4.3:+68804594 | MS.gene88158:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 4.3:+68806845 | MS.gene88158:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 4.3:-68805802 | None:intergenic |
| TGTTCTAATTGTAGAAATCA+TGG | 0.395593 | 4.3:+68806197 | MS.gene88158:CDS |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 4.3:+68806935 | MS.gene88158:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 4.3:-68806111 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 4.3:+68806917 | MS.gene88158:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 4.3:+68804675 | MS.gene88158:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 4.3:+68805996 | MS.gene88158:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 4.3:-68806293 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 4.3:+68806501 | MS.gene88158:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 4.3:+68806580 | MS.gene88158:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 4.3:+68806236 | MS.gene88158:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 4.3:+68805581 | MS.gene88158:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 4.3:-68804522 | None:intergenic |
| TTAGAACAACATCTTGTCCT+TGG | 0.444609 | 4.3:-68806182 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 4.3:-68804404 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 4.3:+68804634 | MS.gene88158:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 4.3:+68806088 | MS.gene88158:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 4.3:+68806061 | MS.gene88158:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 4.3:+68804595 | MS.gene88158:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 4.3:+68804330 | MS.gene88158:CDS |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 4.3:-68806903 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 4.3:-68804390 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 4.3:+68806044 | MS.gene88158:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 4.3:+68804148 | MS.gene88158:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 4.3:+68806230 | MS.gene88158:CDS |
| AACGCACAGGAGCTAATTCA+TGG | 0.491247 | 4.3:-68804495 | None:intergenic |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 4.3:+68804666 | MS.gene88158:CDS |
| GAAATCATGGGCACACAATA+CGG | 0.495236 | 4.3:+68806210 | MS.gene88158:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 4.3:+68806458 | MS.gene88158:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 4.3:+68804296 | MS.gene88158:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 4.3:+68806737 | MS.gene88158:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 4.3:+68804697 | MS.gene88158:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 4.3:-68803917 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 4.3:+68804628 | MS.gene88158:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 4.3:+68804270 | MS.gene88158:CDS |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 4.3:-68806893 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 4.3:-68805719 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 4.3:+68804698 | MS.gene88158:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 4.3:+68804076 | MS.gene88158:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 4.3:+68805835 | MS.gene88158:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 4.3:+68804295 | MS.gene88158:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 4.3:-68805925 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 4.3:+68806581 | MS.gene88158:CDS |
| GTTCTAATTGTAGAAATCAT+GGG | 0.537651 | 4.3:+68806198 | MS.gene88158:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 4.3:-68806881 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 4.3:+68804346 | MS.gene88158:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 4.3:+68806783 | MS.gene88158:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 4.3:-68804485 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 4.3:-68805788 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 4.3:+68805885 | MS.gene88158:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 4.3:+68806502 | MS.gene88158:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 4.3:+68806257 | MS.gene88158:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 4.3:+68806485 | MS.gene88158:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 4.3:-68805895 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 4.3:+68806265 | MS.gene88158:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 4.3:+68804254 | MS.gene88158:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 4.3:-68806134 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 4.3:+68804112 | MS.gene88158:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 4.3:-68805780 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 4.3:+68804189 | MS.gene88158:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 4.3:+68805919 | MS.gene88158:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 4.3:+68806258 | MS.gene88158:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 4.3:-68804484 | None:intergenic |
| AGAACAACATCTTGTCCTTG+GGG | 0.584564 | 4.3:-68806180 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 4.3:+68804333 | MS.gene88158:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 4.3:+68805920 | MS.gene88158:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 4.3:+68806797 | MS.gene88158:CDS |
| TAAGGTAAATAGCCGTCATG+AGG | 0.585792 | 4.3:+68806037 | MS.gene88158:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 4.3:+68804635 | MS.gene88158:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 4.3:+68805555 | MS.gene88158:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 4.3:-68806971 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 4.3:-68806889 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 4.3:+68804680 | MS.gene88158:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 4.3:+68806803 | MS.gene88158:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 4.3:-68805787 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 4.3:+68807074 | MS.gene88158:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 4.3:+68805636 | MS.gene88158:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 4.3:+68804253 | MS.gene88158:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 4.3:+68806798 | MS.gene88158:CDS |
| AAGGTAAATAGCCGTCATGA+GGG | 0.605563 | 4.3:+68806038 | MS.gene88158:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 4.3:-68805519 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 4.3:+68804699 | MS.gene88158:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 4.3:+68807108 | MS.gene88158:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 4.3:+68805997 | MS.gene88158:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 4.3:+68803974 | MS.gene88158:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 4.3:+68804730 | MS.gene88158:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 4.3:+68804556 | MS.gene88158:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 4.3:+68803979 | MS.gene88158:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 4.3:-68806049 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 4.3:-68806890 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 4.3:+68805632 | MS.gene88158:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 4.3:+68803928 | MS.gene88158:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 4.3:+68806134 | MS.gene88158:CDS |
| ATCAAATGGACAAAACGCAC+AGG | 0.627200 | 4.3:-68804508 | None:intergenic |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 4.3:-68806790 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 4.3:+68804681 | MS.gene88158:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 4.3:-68804270 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 4.3:-68804123 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 4.3:+68806848 | MS.gene88158:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 4.3:+68804130 | MS.gene88158:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 4.3:+68804571 | MS.gene88158:CDS |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 4.3:+68805918 | MS.gene88158:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 4.3:+68804131 | MS.gene88158:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 4.3:+68806461 | MS.gene88158:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 4.3:+68804093 | MS.gene88158:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 4.3:+68803975 | MS.gene88158:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 4.3:+68806259 | MS.gene88158:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 4.3:+68805800 | MS.gene88158:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 4.3:+68806144 | MS.gene88158:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 4.3:+68804334 | MS.gene88158:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 4.3:+68806964 | MS.gene88158:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 4.3:-68806457 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 4.3:+68805986 | MS.gene88158:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 4.3:+68806121 | MS.gene88158:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 4.3:+68804106 | MS.gene88158:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 4.3:+68806055 | MS.gene88158:CDS |
| TGTAGACGCTTTGAACGCAG+AGG | 0.705116 | 4.3:+68805753 | MS.gene88158:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 4.3:+68804088 | MS.gene88158:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 4.3:-68805949 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 4.3:+68803976 | MS.gene88158:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 4.3:+68803925 | MS.gene88158:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 4.3:-68805428 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 4.3:+68804210 | MS.gene88158:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | + | chr4.3:68806830-68806849 | MS.gene88158:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | + | chr4.3:68806831-68806850 | MS.gene88158:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | - | chr4.3:68807059-68807078 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | + | chr4.3:68806386-68806405 | MS.gene88158:intron | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr4.3:68804666-68804685 | MS.gene88158:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | chr4.3:68805581-68805600 | MS.gene88158:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | chr4.3:68805669-68805688 | MS.gene88158:CDS | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | + | chr4.3:68806832-68806851 | MS.gene88158:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | chr4.3:68804962-68804981 | None:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr4.3:68804920-68804939 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | - | chr4.3:68806656-68806675 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr4.3:68804364-68804383 | MS.gene88158:CDS | 25.0% |
| ! | GATTTATAGTCTGTGTAATA+AGG | + | chr4.3:68806019-68806038 | MS.gene88158:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | chr4.3:68805286-68805305 | MS.gene88158:intron | 25.0% |
| ! | GTTCTAATTGTAGAAATCAT+GGG | + | chr4.3:68806198-68806217 | MS.gene88158:CDS | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | - | chr4.3:68806986-68807005 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr4.3:68804921-68804940 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | chr4.3:68804543-68804562 | None:intergenic | 25.0% |
| ! | TGTTCTAATTGTAGAAATCA+TGG | + | chr4.3:68806197-68806216 | MS.gene88158:CDS | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | chr4.3:68805692-68805711 | MS.gene88158:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | chr4.3:68805577-68805596 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | - | chr4.3:68806623-68806642 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | chr4.3:68805901-68805920 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | chr4.3:68805011-68805030 | MS.gene88158:intron | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | + | chr4.3:68806719-68806738 | MS.gene88158:intron | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | chr4.3:68805902-68805921 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | - | chr4.3:68806860-68806879 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | chr4.3:68804989-68805008 | MS.gene88158:intron | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | + | chr4.3:68806580-68806599 | MS.gene88158:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | chr4.3:68804990-68805009 | MS.gene88158:intron | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | chr4.3:68804699-68804718 | MS.gene88158:CDS | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | chr4.3:68805431-68805450 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | + | chr4.3:68806581-68806600 | MS.gene88158:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr4.3:68804889-68804908 | MS.gene88158:intron | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr4.3:68804195-68804214 | MS.gene88158:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | - | chr4.3:68806906-68806925 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr4.3:68804890-68804909 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr4.3:68804675-68804694 | MS.gene88158:CDS | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | - | chr4.3:68806114-68806133 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr4.3:68804188-68804207 | MS.gene88158:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | chr4.3:68804698-68804717 | MS.gene88158:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr4.3:68804334-68804353 | MS.gene88158:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr4.3:68804784-68804803 | MS.gene88158:intron | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | - | chr4.3:68806296-68806315 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr4.3:68804595-68804614 | MS.gene88158:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | chr4.3:68803920-68803939 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | chr4.3:68804253-68804272 | MS.gene88158:CDS | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr4.3:68804919-68804938 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr4.3:68804254-68804273 | MS.gene88158:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr4.3:68804333-68804352 | MS.gene88158:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | chr4.3:68804535-68804554 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr4.3:68804893-68804912 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr4.3:68804594-68804613 | MS.gene88158:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr4.3:68804189-68804208 | MS.gene88158:CDS | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | - | chr4.3:68805347-68805366 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | - | chr4.3:68806751-68806770 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | chr4.3:68805037-68805056 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | chr4.3:68805265-68805284 | MS.gene88158:intron | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | chr4.3:68806088-68806107 | MS.gene88158:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr4.3:68804807-68804826 | MS.gene88158:intron | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | chr4.3:68804607-68804626 | MS.gene88158:CDS | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | chr4.3:68804606-68804625 | MS.gene88158:CDS | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | chr4.3:68805656-68805675 | MS.gene88158:CDS | 30.0% |
| ACTTCATGGCACAAATAATG+TGG | - | chr4.3:68805791-68805810 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr4.3:68804648-68804667 | MS.gene88158:CDS | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | chr4.3:68806087-68806106 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | chr4.3:68805805-68805824 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | chr4.3:68804296-68804315 | MS.gene88158:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | chr4.3:68805722-68805741 | None:intergenic | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | - | chr4.3:68806907-68806926 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | + | chr4.3:68805226-68805245 | MS.gene88158:intron | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | chr4.3:68805790-68805809 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | + | chr4.3:68805555-68805574 | MS.gene88158:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | chr4.3:68805100-68805119 | MS.gene88158:intron | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | chr4.3:68804697-68804716 | MS.gene88158:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr4.3:68804330-68804349 | MS.gene88158:CDS | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | + | chr4.3:68805038-68805057 | MS.gene88158:intron | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr4.3:68804112-68804131 | MS.gene88158:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | - | chr4.3:68806811-68806830 | None:intergenic | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | chr4.3:68804525-68804544 | None:intergenic | 35.0% | |
| TAGAACAACATCTTGTCCTT+GGG | - | chr4.3:68806184-68806203 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | - | chr4.3:68806424-68806443 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | + | chr4.3:68803925-68803944 | MS.gene88158:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | - | chr4.3:68806185-68806204 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | chr4.3:68805835-68805854 | MS.gene88158:CDS | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr4.3:68803975-68803994 | MS.gene88158:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr4.3:68804844-68804863 | MS.gene88158:intron | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | + | chr4.3:68806798-68806817 | MS.gene88158:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | chr4.3:68805228-68805247 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr4.3:68804813-68804832 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr4.3:68804556-68804575 | MS.gene88158:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | chr4.3:68805983-68806002 | MS.gene88158:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | chr4.3:68805302-68805321 | MS.gene88158:intron | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr4.3:68804928-68804947 | MS.gene88158:intron | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | chr4.3:68805301-68805320 | MS.gene88158:intron | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | chr4.3:68804735-68804754 | MS.gene88158:intron | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | - | chr4.3:68806750-68806769 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr4.3:68804346-68804365 | MS.gene88158:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | chr4.3:68805997-68806016 | MS.gene88158:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | chr4.3:68804948-68804967 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | + | chr4.3:68806671-68806690 | MS.gene88158:intron | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr4.3:68804913-68804932 | MS.gene88158:intron | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr4.3:68804806-68804825 | MS.gene88158:intron | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | chr4.3:68804616-68804635 | MS.gene88158:CDS | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | chr4.3:68805219-68805238 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | + | chr4.3:68805053-68805072 | MS.gene88158:intron | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | chr4.3:68805918-68805937 | MS.gene88158:CDS | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | + | chr4.3:68807108-68807127 | MS.gene88158:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | chr4.3:68805919-68805938 | MS.gene88158:CDS | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | + | chr4.3:68806061-68806080 | MS.gene88158:CDS | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | + | chr4.3:68804076-68804095 | MS.gene88158:CDS | 40.0% | |
| AAGGTAAATAGCCGTCATGA+GGG | + | chr4.3:68806038-68806057 | MS.gene88158:CDS | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr4.3:68804130-68804149 | MS.gene88158:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | chr4.3:68805952-68805971 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | chr4.3:68803928-68803947 | MS.gene88158:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr4.3:68804443-68804462 | MS.gene88158:CDS | 40.0% | |
| AGAACAACATCTTGTCCTTG+GGG | - | chr4.3:68806183-68806202 | None:intergenic | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | + | chr4.3:68805363-68805382 | MS.gene88158:intron | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | chr4.3:68805590-68805609 | MS.gene88158:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr4.3:68804488-68804507 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | chr4.3:68805232-68805251 | MS.gene88158:intron | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | - | chr4.3:68806974-68806993 | None:intergenic | 40.0% | |
| ATCAAATGGACAAAACGCAC+AGG | - | chr4.3:68804511-68804530 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr4.3:68804131-68804150 | MS.gene88158:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | + | chr4.3:68805052-68805071 | MS.gene88158:intron | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr4.3:68804148-68804167 | MS.gene88158:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | + | chr4.3:68806964-68806983 | MS.gene88158:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | + | chr4.3:68806502-68806521 | MS.gene88158:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | chr4.3:68805632-68805651 | MS.gene88158:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr4.3:68804126-68804145 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr4.3:68804407-68804426 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | chr4.3:68805834-68805853 | None:intergenic | 40.0% | |
| GAAATCATGGGCACACAATA+CGG | + | chr4.3:68806210-68806229 | MS.gene88158:CDS | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | chr4.3:68804295-68804314 | MS.gene88158:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | chr4.3:68805783-68805802 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr4.3:68804487-68804506 | None:intergenic | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr4.3:68804210-68804229 | MS.gene88158:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | chr4.3:68805233-68805252 | MS.gene88158:intron | 40.0% | |
| TAAGGTAAATAGCCGTCATG+AGG | + | chr4.3:68806037-68806056 | MS.gene88158:CDS | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | - | chr4.3:68804750-68804769 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | + | chr4.3:68807074-68807093 | MS.gene88158:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | - | chr4.3:68806793-68806812 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | chr4.3:68805269-68805288 | MS.gene88158:intron | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr4.3:68804645-68804664 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | chr4.3:68805800-68805819 | MS.gene88158:CDS | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | + | chr4.3:68806803-68806822 | MS.gene88158:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | - | chr4.3:68806896-68806915 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | chr4.3:68805898-68805917 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr4.3:68804393-68804412 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | chr4.3:68805268-68805287 | MS.gene88158:intron | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr4.3:68804824-68804843 | MS.gene88158:intron | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr4.3:68803976-68803995 | MS.gene88158:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr4.3:68803974-68803993 | MS.gene88158:CDS | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | + | chr4.3:68806797-68806816 | MS.gene88158:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | chr4.3:68804730-68804749 | MS.gene88158:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | chr4.3:68805275-68805294 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | chr4.3:68804945-68804964 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | chr4.3:68805996-68806015 | MS.gene88158:CDS | 40.0% |
| !! | GGGTTGACTTTTTACTCCTA+CGG | - | chr4.3:68806163-68806182 | None:intergenic | 40.0% |
| !! | GGTTGACTTTTTACTCCTAC+GGG | - | chr4.3:68806162-68806181 | None:intergenic | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr4.3:68804619-68804638 | MS.gene88158:CDS | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | chr4.3:68805336-68805355 | MS.gene88158:intron | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | chr4.3:68804615-68804634 | MS.gene88158:CDS | 40.0% |
| AACGCACAGGAGCTAATTCA+TGG | - | chr4.3:68804498-68804517 | None:intergenic | 45.0% | |
| AAGACAGCCATTGTGCAAGT+TGG | + | chr4.3:68806783-68806802 | MS.gene88158:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | chr4.3:68806044-68806063 | MS.gene88158:CDS | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | + | chr4.3:68805920-68805939 | MS.gene88158:CDS | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | - | chr4.3:68806242-68806261 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | + | chr4.3:68806935-68806954 | MS.gene88158:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | chr4.3:68805139-68805158 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | - | chr4.3:68806892-68806911 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr4.3:68804680-68804699 | MS.gene88158:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | chr4.3:68805114-68805133 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | + | chr4.3:68806458-68806477 | MS.gene88158:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | chr4.3:68806052-68806071 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | - | chr4.3:68806460-68806479 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | + | chr4.3:68805051-68805070 | MS.gene88158:intron | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr4.3:68804273-68804292 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | chr4.3:68806137-68806156 | None:intergenic | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | chr4.3:68805636-68805655 | MS.gene88158:CDS | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr4.3:68804106-68804125 | MS.gene88158:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | chr4.3:68805986-68806005 | MS.gene88158:CDS | 45.0% | |
| GGAGTAAAAAGTCAACCCCA+AGG | + | chr4.3:68806165-68806184 | MS.gene88158:CDS | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | - | chr4.3:68805522-68805541 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | chr4.3:68806258-68806277 | MS.gene88158:CDS | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | + | chr4.3:68806917-68806936 | MS.gene88158:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | + | chr4.3:68806461-68806480 | MS.gene88158:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | chr4.3:68806259-68806278 | MS.gene88158:CDS | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | chr4.3:68806121-68806140 | MS.gene88158:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr4.3:68804681-68804700 | MS.gene88158:CDS | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | + | chr4.3:68806845-68806864 | MS.gene88158:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr4.3:68804270-68804289 | MS.gene88158:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | chr4.3:68806134-68806153 | MS.gene88158:CDS | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | chr4.3:68805054-68805073 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | + | chr4.3:68806485-68806504 | MS.gene88158:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | + | chr4.3:68806501-68806520 | MS.gene88158:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | + | chr4.3:68806848-68806867 | MS.gene88158:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr4.3:68803979-68803998 | MS.gene88158:CDS | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | chr4.3:68806236-68806255 | MS.gene88158:CDS | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | chr4.3:68805416-68805435 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | + | chr4.3:68806737-68806756 | MS.gene88158:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | chr4.3:68805413-68805432 | MS.gene88158:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | - | chr4.3:68806956-68806975 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | - | chr4.3:68806893-68806912 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr4.3:68804571-68804590 | MS.gene88158:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | - | chr4.3:68806884-68806903 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | + | chr4.3:68806265-68806284 | MS.gene88158:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | chr4.3:68805885-68805904 | MS.gene88158:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | chr4.3:68806055-68806074 | MS.gene88158:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr4.3:68804088-68804107 | MS.gene88158:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | chr4.3:68806257-68806276 | MS.gene88158:CDS | 50.0% |
| ! | TGTAGACGCTTTGAACGCAG+AGG | + | chr4.3:68805753-68805772 | MS.gene88158:CDS | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | chr4.3:68806144-68806163 | MS.gene88158:CDS | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr4.3:68804634-68804653 | MS.gene88158:CDS | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | chr4.3:68805928-68805947 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr4.3:68804635-68804654 | MS.gene88158:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | chr4.3:68805131-68805150 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr4.3:68804628-68804647 | MS.gene88158:CDS | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr4.3:68804093-68804112 | MS.gene88158:CDS | 55.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | chr4.3:68806230-68806249 | MS.gene88158:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | chr4.3:68805118-68805137 | MS.gene88158:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68803890 | 68807143 | 68803890 | ID=MS.gene88158 |
| chr4.3 | mRNA | 68803890 | 68807143 | 68803890 | ID=MS.gene88158.t1;Parent=MS.gene88158 |
| chr4.3 | exon | 68803890 | 68804751 | 68803890 | ID=MS.gene88158.t1.exon1;Parent=MS.gene88158.t1 |
| chr4.3 | CDS | 68803890 | 68804751 | 68803890 | ID=cds.MS.gene88158.t1;Parent=MS.gene88158.t1 |
| chr4.3 | exon | 68805388 | 68806328 | 68805388 | ID=MS.gene88158.t1.exon2;Parent=MS.gene88158.t1 |
| chr4.3 | CDS | 68805388 | 68806328 | 68805388 | ID=cds.MS.gene88158.t1;Parent=MS.gene88158.t1 |
| chr4.3 | exon | 68806425 | 68806646 | 68806425 | ID=MS.gene88158.t1.exon3;Parent=MS.gene88158.t1 |
| chr4.3 | CDS | 68806425 | 68806646 | 68806425 | ID=cds.MS.gene88158.t1;Parent=MS.gene88158.t1 |
| chr4.3 | exon | 68806737 | 68806985 | 68806737 | ID=MS.gene88158.t1.exon4;Parent=MS.gene88158.t1 |
| chr4.3 | CDS | 68806737 | 68806985 | 68806737 | ID=cds.MS.gene88158.t1;Parent=MS.gene88158.t1 |
| chr4.3 | exon | 68807072 | 68807143 | 68807072 | ID=MS.gene88158.t1.exon5;Parent=MS.gene88158.t1 |
| chr4.3 | CDS | 68807072 | 68807143 | 68807072 | ID=cds.MS.gene88158.t1;Parent=MS.gene88158.t1 |
| Gene Sequence |
| Protein sequence |
