Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88199.t1 | XP_024636833.1 | 93.7 | 317 | 17 | 1 | 1 | 314 | 1 | 317 | 1.10E-158 | 569.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88199.t1 | A0A396I6X6 | 93.7 | 317 | 17 | 1 | 1 | 314 | 1 | 317 | 7.9e-159 | 569.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055564 | MS.gene88199 | 0.819446 | 1.16E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88199.t1 | MTR_4g052500 | 94.352 | 301 | 14 | 1 | 1 | 298 | 1 | 301 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88199.t1 | AT5G22340 | 60.000 | 285 | 104 | 4 | 38 | 314 | 41 | 323 | 1.57e-114 | 334 |
| MS.gene88199.t1 | AT5G22340 | 58.566 | 251 | 94 | 4 | 38 | 280 | 41 | 289 | 2.07e-93 | 281 |
Find 58 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCAGCAATTTATGGTCTT+TGG | 0.181311 | 4.4:-50101036 | MS.gene88199:CDS |
| GCAGTCATCTTCCTATTTAC+TGG | 0.187800 | 4.4:+50103716 | None:intergenic |
| CTCAGCCTTCAAAATTCTTC+TGG | 0.224073 | 4.4:+50100526 | None:intergenic |
| TAGCTTGTGCCAGCCATGTT+TGG | 0.268429 | 4.4:-50100619 | MS.gene88199:CDS |
| GTGATCCCGGCAGCAATTTA+TGG | 0.287109 | 4.4:-50101043 | MS.gene88199:CDS |
| AGGAGAAAATGAAGGGGTTT+TGG | 0.293414 | 4.4:+50106232 | None:intergenic |
| CTACTTCTCTCTGTGGGTAT+TGG | 0.302680 | 4.4:-50103275 | MS.gene88199:CDS |
| AGTACCCAAGAGTGGTTATT+AGG | 0.309012 | 4.4:-50103752 | MS.gene88199:CDS |
| CTCTCTGTGGGTATTGGATT+GGG | 0.310124 | 4.4:-50103269 | MS.gene88199:CDS |
| TCTCTCTGTGGGTATTGGAT+TGG | 0.323276 | 4.4:-50103270 | MS.gene88199:CDS |
| ACAATTCTGCACCAGTAAAT+AGG | 0.325690 | 4.4:-50103727 | MS.gene88199:CDS |
| GGCAGCAATTTATGGTCTTT+GGG | 0.326533 | 4.4:-50101035 | MS.gene88199:CDS |
| CGAATGGATTACAGAAATTC+TGG | 0.335666 | 4.4:-50104025 | MS.gene88199:CDS |
| CAAGAACTTGTGATTTACTA+TGG | 0.342168 | 4.4:-50104048 | MS.gene88199:CDS |
| AGCTTGTGCCAGCCATGTTT+GGG | 0.354796 | 4.4:-50100618 | MS.gene88199:CDS |
| TGAGTCTTGCTCTGTTGTCT+TGG | 0.381989 | 4.4:+50103483 | None:intergenic |
| CTGCTATAAGTTATGCGATT+GGG | 0.398513 | 4.4:-50102913 | MS.gene88199:CDS |
| ATCTCCAAGGCTTGTGATCC+CGG | 0.413235 | 4.4:-50101056 | MS.gene88199:CDS |
| TGTCGCCTAATAACCACTCT+TGG | 0.416392 | 4.4:+50103747 | None:intergenic |
| ATTCTTTCGAGAAAACAATC+AGG | 0.440956 | 4.4:-50101099 | MS.gene88199:CDS |
| GAATTGAAAGGTGTAACAAT+TGG | 0.446108 | 4.4:+50106256 | None:intergenic |
| TATAGAGACAATAAAGACTT+AGG | 0.447368 | 4.4:-50100559 | MS.gene88199:CDS |
| ATGCAATAACAAACCTGAAA+AGG | 0.451361 | 4.4:+50102888 | None:intergenic |
| TTGAAGGATAGAGAATTAAA+CGG | 0.472253 | 4.4:-50104082 | MS.gene88199:CDS |
| TATTTGTGGAACAGTTTCAC+TGG | 0.472479 | 4.4:+50101278 | None:intergenic |
| TTGTGATTTACTATGGCGAA+TGG | 0.515409 | 4.4:-50104041 | MS.gene88199:CDS |
| GTCGCCTAATAACCACTCTT+GGG | 0.520653 | 4.4:+50103748 | None:intergenic |
| CAAAGACCATAAATTGCTGC+CGG | 0.523449 | 4.4:+50101037 | None:intergenic |
| CAATGCTCAACAAATAGAAC+AGG | 0.524035 | 4.4:-50103969 | MS.gene88199:intron |
| TCTCGTACTGCTACTACTAC+AGG | 0.526502 | 4.4:-50106158 | MS.gene88199:intron |
| GAGAAAACAATCAGGGGTAG+TGG | 0.540135 | 4.4:-50101091 | MS.gene88199:CDS |
| TTTAGTGAGTAATGTAGATG+AGG | 0.543159 | 4.4:-50104122 | MS.gene88199:intron |
| GACAAATCTAATGCTATCCA+TGG | 0.549721 | 4.4:+50106280 | None:intergenic |
| GAATTACTACTTCTCTCTGT+GGG | 0.553752 | 4.4:-50103281 | MS.gene88199:CDS |
| GCTGCCGGGATCACAAGCCT+TGG | 0.555710 | 4.4:+50101052 | None:intergenic |
| ACAAACATCCCAAACATGGC+TGG | 0.556898 | 4.4:+50100610 | None:intergenic |
| TGCTATAAGTTATGCGATTG+GGG | 0.558016 | 4.4:-50102912 | MS.gene88199:CDS |
| GTATAGCACTTTCATCTCCA+AGG | 0.559840 | 4.4:-50101069 | MS.gene88199:CDS |
| TTCTTTCGAGAAAACAATCA+GGG | 0.581970 | 4.4:-50101098 | MS.gene88199:CDS |
| GCTGCTATAAGTTATGCGAT+TGG | 0.586026 | 4.4:-50102914 | MS.gene88199:CDS |
| CATGTTGATACAAGAGCTGA+AGG | 0.591014 | 4.4:+50101313 | None:intergenic |
| AAAGACCATAAATTGCTGCC+GGG | 0.592930 | 4.4:+50101038 | None:intergenic |
| TTGTTGAGCATTGTTGTCGT+CGG | 0.594031 | 4.4:+50103979 | None:intergenic |
| GTTGGGAAAGGAGAAAATGA+AGG | 0.596622 | 4.4:+50106224 | None:intergenic |
| GGTATTGGATTGGGTTGTAG+CGG | 0.607478 | 4.4:-50103260 | MS.gene88199:CDS |
| AACTTTCAAGTACCCAAGAG+TGG | 0.615621 | 4.4:-50103760 | MS.gene88199:CDS |
| TTGGGAAAGGAGAAAATGAA+GGG | 0.630954 | 4.4:+50106225 | None:intergenic |
| ATCATAGAGACTAACAGCGA+TGG | 0.632346 | 4.4:-50103794 | MS.gene88199:CDS |
| AAATAGGAAGATGACTGCAA+AGG | 0.634207 | 4.4:-50103711 | MS.gene88199:intron |
| GTAGACAAACATCCCAAACA+TGG | 0.634660 | 4.4:+50100606 | None:intergenic |
| GCTCTCAGTGATGAAACAGA+GGG | 0.637121 | 4.4:+50106182 | None:intergenic |
| AGAATTACTACTTCTCTCTG+TGG | 0.661836 | 4.4:-50103282 | MS.gene88199:CDS |
| AGCTCTCAGTGATGAAACAG+AGG | 0.663245 | 4.4:+50106181 | None:intergenic |
| ATAGAGACTAACAGCGATGG+CGG | 0.666763 | 4.4:-50103791 | MS.gene88199:CDS |
| TCTTTCGAGAAAACAATCAG+GGG | 0.694510 | 4.4:-50101097 | MS.gene88199:CDS |
| TGGGAAAGGAGAAAATGAAG+GGG | 0.695621 | 4.4:+50106226 | None:intergenic |
| TCTCAGTGATGAAACAGAGG+GGG | 0.698666 | 4.4:+50106184 | None:intergenic |
| CTCTCAGTGATGAAACAGAG+GGG | 0.719051 | 4.4:+50106183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAAAAAATTAATAAG+GGG | + | chr4.4:50101243-50101262 | None:intergenic | 10.0% |
| !! | ATATTTGCATATTAAAATAA+TGG | - | chr4.4:50105171-50105190 | MS.gene88199:intron | 10.0% |
| !!! | AATATAACAACTTATTTTAA+TGG | + | chr4.4:50101717-50101736 | None:intergenic | 10.0% |
| !!! | CTTCATATTATAATTTTAAT+GGG | - | chr4.4:50102357-50102376 | MS.gene88199:intron | 10.0% |
| !!! | TATTTTAGTTAACATTAATT+GGG | + | chr4.4:50104920-50104939 | None:intergenic | 10.0% |
| !!! | TTATTTTAGTTAACATTAAT+TGG | + | chr4.4:50104921-50104940 | None:intergenic | 10.0% |
| !! | ACTAAAAATAAAGTATAAGT+TGG | + | chr4.4:50102260-50102279 | None:intergenic | 15.0% |
| !! | ATAAGATGAAAGAAATAATT+TGG | + | chr4.4:50103796-50103815 | None:intergenic | 15.0% |
| !! | ATAATACCAAACTTAAAATA+TGG | + | chr4.4:50105979-50105998 | None:intergenic | 15.0% |
| !! | ATATTGTAGAATTCATATTT+GGG | - | chr4.4:50101732-50101751 | MS.gene88199:intron | 15.0% |
| !! | CATACATATATAGAATATAA+TGG | - | chr4.4:50102284-50102303 | MS.gene88199:intron | 15.0% |
| !! | TAAAAAATAAATAAATCAGC+AGG | + | chr4.4:50103493-50103512 | None:intergenic | 15.0% |
| !! | TACATAAAAAATTAATAAGG+GGG | + | chr4.4:50101242-50101261 | None:intergenic | 15.0% |
| !! | TAGAATATAATTATATGTGT+TGG | - | chr4.4:50100833-50100852 | MS.gene88199:intron | 15.0% |
| !! | TATATTGTAGAATTCATATT+TGG | - | chr4.4:50101731-50101750 | MS.gene88199:intron | 15.0% |
| !! | TGATATATGATAAAACATTA+TGG | + | chr4.4:50101068-50101087 | None:intergenic | 15.0% |
| !! | TTGACTTTAATCATAAAAAA+GGG | + | chr4.4:50104482-50104501 | None:intergenic | 15.0% |
| !!! | ATATATTTTATAAGCAGAAT+TGG | - | chr4.4:50105667-50105686 | MS.gene88199:intron | 15.0% |
| !!! | GCTTCATATTATAATTTTAA+TGG | - | chr4.4:50102356-50102375 | MS.gene88199:intron | 15.0% |
| !!! | GTAAATTACATTTTAAATGA+TGG | + | chr4.4:50104185-50104204 | None:intergenic | 15.0% |
| !!! | TAAAACAAATTCTAAGTTTT+CGG | + | chr4.4:50105589-50105608 | None:intergenic | 15.0% |
| !!! | TATGTATATGTTTGATTTTT+TGG | - | chr4.4:50101256-50101275 | MS.gene88199:CDS | 15.0% |
| !!! | TGATTAAGTATAACTTTTTT+AGG | + | chr4.4:50102594-50102613 | None:intergenic | 15.0% |
| !!! | TGATTAGCTTTTAATATTAA+GGG | + | chr4.4:50101776-50101795 | None:intergenic | 15.0% |
| !!! | TTTACTTATTTTTCATAGTA+AGG | - | chr4.4:50102381-50102400 | MS.gene88199:intron | 15.0% |
| !!! | TTTGACTTTAATCATAAAAA+AGG | + | chr4.4:50104483-50104502 | None:intergenic | 15.0% |
| !! | ACATTACTCACTAAAAATTA+TGG | + | chr4.4:50102685-50102704 | None:intergenic | 20.0% |
| !! | ATGATAAGATTAAGTTTAGA+TGG | - | chr4.4:50103713-50103732 | MS.gene88199:CDS | 20.0% |
| !! | ATTCTTACAATGTTGTTAAA+TGG | - | chr4.4:50101804-50101823 | MS.gene88199:intron | 20.0% |
| !! | ATTTGATTAAAGTCAAATAG+GGG | - | chr4.4:50104287-50104306 | MS.gene88199:intron | 20.0% |
| !! | CATTTGATTAAAGTCAAATA+GGG | - | chr4.4:50104286-50104305 | MS.gene88199:intron | 20.0% |
| !! | CTATCTTCTCAAATTATTAT+CGG | + | chr4.4:50100816-50100835 | None:intergenic | 20.0% |
| !! | CTTAATATTAAAAGCTAATC+AGG | - | chr4.4:50101775-50101794 | MS.gene88199:intron | 20.0% |
| !! | GTTATACTTAATCATTTACA+TGG | - | chr4.4:50102600-50102619 | MS.gene88199:intron | 20.0% |
| !! | TCATTTGATTAAAGTCAAAT+AGG | - | chr4.4:50104285-50104304 | MS.gene88199:intron | 20.0% |
| !! | TTATTTGATCAGGAATTTAA+TGG | - | chr4.4:50101623-50101642 | MS.gene88199:intron | 20.0% |
| !!! | ACTACTTTCTTTTTTATTCT+AGG | - | chr4.4:50101990-50102009 | MS.gene88199:intron | 20.0% |
| !!! | ATATTTTTTGACCAAAACAA+GGG | + | chr4.4:50105651-50105670 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTTGTTTTTCATT+TGG | - | chr4.4:50103125-50103144 | MS.gene88199:intron | 20.0% |
| !!! | CGAAATATACTATTTTAATC+AGG | - | chr4.4:50105347-50105366 | MS.gene88199:intron | 20.0% |
| !!! | CTACTTTCTTTTTTATTCTA+GGG | - | chr4.4:50101991-50102010 | MS.gene88199:intron | 20.0% |
| !!! | CTGATTAGCTTTTAATATTA+AGG | + | chr4.4:50101777-50101796 | None:intergenic | 20.0% |
| !!! | TATATTTTTTGACCAAAACA+AGG | + | chr4.4:50105652-50105671 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr4.4:50101461-50101480 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCATGAATATTTG+TGG | + | chr4.4:50105551-50105570 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+CGG | - | chr4.4:50105264-50105283 | MS.gene88199:intron | 20.0% |
| ! | AAAAAGAAGTCAAAGAAGTA+AGG | - | chr4.4:50105563-50105582 | MS.gene88199:intron | 25.0% |
| ! | AAAAATTAATAAGGGGGTTA+AGG | + | chr4.4:50101236-50101255 | None:intergenic | 25.0% |
| ! | AAAAGAAAGTAGTGATTAGA+AGG | + | chr4.4:50101983-50102002 | None:intergenic | 25.0% |
| ! | AAACAAAAGAAATCAGTCAT+AGG | + | chr4.4:50105145-50105164 | None:intergenic | 25.0% |
| ! | AAACCATTATGATAAGACAT+AGG | + | chr4.4:50103748-50103767 | None:intergenic | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | - | chr4.4:50104377-50104396 | MS.gene88199:intron | 25.0% |
| ! | AATTTAACTAGATTTGTGCT+TGG | - | chr4.4:50103969-50103988 | MS.gene88199:intron | 25.0% |
| ! | AGTGATATACTATATCCAAA+AGG | + | chr4.4:50105025-50105044 | None:intergenic | 25.0% |
| ! | ATGAACTTTCTTTCGTTTAA+CGG | - | chr4.4:50102060-50102079 | MS.gene88199:intron | 25.0% |
| ! | CAGAAATACAATATTCAGTT+CGG | - | chr4.4:50100898-50100917 | MS.gene88199:intron | 25.0% |
| ! | CTTACAACATCAAAAGTAAT+TGG | + | chr4.4:50104014-50104033 | None:intergenic | 25.0% |
| ! | GAAGAAAGAATATAATTGAG+TGG | + | chr4.4:50103693-50103712 | None:intergenic | 25.0% |
| ! | TAACATCTTGTGTAAAAAAC+AGG | - | chr4.4:50104376-50104395 | MS.gene88199:intron | 25.0% |
| ! | TACAGTATGAAATATAAGCA+AGG | + | chr4.4:50101652-50101671 | None:intergenic | 25.0% |
| ! | TATAGAGACAATAAAGACTT+AGG | - | chr4.4:50106253-50106272 | MS.gene88199:CDS | 25.0% |
| ! | TCTAGTTAAATTCAACAAGA+CGG | + | chr4.4:50103961-50103980 | None:intergenic | 25.0% |
| ! | TGTACAAACGATAGAAATAA+TGG | + | chr4.4:50102571-50102590 | None:intergenic | 25.0% |
| ! | TTGAAGGATAGAGAATTAAA+CGG | - | chr4.4:50102730-50102749 | MS.gene88199:intron | 25.0% |
| ! | TTTCCTATGTCTTATCATAA+TGG | - | chr4.4:50103742-50103761 | MS.gene88199:CDS | 25.0% |
| ! | TTTGATTAAAGTCAAATAGG+GGG | - | chr4.4:50104288-50104307 | MS.gene88199:intron | 25.0% |
| !! | AAATAAAGTATAAGTTGGAC+CGG | + | chr4.4:50102255-50102274 | None:intergenic | 25.0% |
| !! | AAATGTTTCTAATGATCTCA+TGG | - | chr4.4:50104500-50104519 | MS.gene88199:intron | 25.0% |
| !! | AGAACATTATATTTTCTCTG+TGG | - | chr4.4:50100968-50100987 | MS.gene88199:intron | 25.0% |
| !! | TAACATTAATTGGGAAGTAT+CGG | + | chr4.4:50104911-50104930 | None:intergenic | 25.0% |
| !! | TGTTCTTTATTTGCTAAAGT+CGG | - | chr4.4:50103406-50103425 | MS.gene88199:intron | 25.0% |
| !! | TTTTCAATAGAAAGAGAAGA+AGG | + | chr4.4:50102017-50102036 | None:intergenic | 25.0% |
| !!! | AACGATCCATATTTTAAGTT+TGG | - | chr4.4:50105970-50105989 | MS.gene88199:intron | 25.0% |
| !!! | AAGCTCCTAATTTTAATTAG+AGG | - | chr4.4:50102310-50102329 | MS.gene88199:intron | 25.0% |
| !!! | ATGTAGTACTGGTTTAAAAT+AGG | + | chr4.4:50104671-50104690 | None:intergenic | 25.0% |
| !!! | GTATTTTATCAATGACTTGT+TGG | - | chr4.4:50105813-50105832 | MS.gene88199:intron | 25.0% |
| !!! | TGTAGTACTGGTTTAAAATA+GGG | + | chr4.4:50104670-50104689 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTGTCTTTTTTCT+TGG | - | chr4.4:50103241-50103260 | MS.gene88199:CDS | 25.0% |
| AAATAACTGTTGTCAAGAAC+AGG | - | chr4.4:50101594-50101613 | MS.gene88199:intron | 30.0% | |
| AAGAGAGAAATGAAGAAAGA+TGG | + | chr4.4:50100683-50100702 | None:intergenic | 30.0% | |
| AATATTGACGATTAAGAGAG+TGG | + | chr4.4:50105094-50105113 | None:intergenic | 30.0% | |
| ACAAACGATAGAAATAATGG+TGG | + | chr4.4:50102568-50102587 | None:intergenic | 30.0% | |
| AGTATGAAATATAAGCAAGG+AGG | + | chr4.4:50101649-50101668 | None:intergenic | 30.0% | |
| ATGCAATAACAAACCTGAAA+AGG | + | chr4.4:50103927-50103946 | None:intergenic | 30.0% | |
| ATTATCCCTTAACGAAAAGT+TGG | - | chr4.4:50103180-50103199 | MS.gene88199:intron | 30.0% | |
| ATTCTTTCGAGAAAACAATC+AGG | - | chr4.4:50105713-50105732 | MS.gene88199:intron | 30.0% | |
| CAAGAACTTGTGATTTACTA+TGG | - | chr4.4:50102764-50102783 | MS.gene88199:intron | 30.0% | |
| GCACTCCTCTAATTAAAATT+AGG | + | chr4.4:50102318-50102337 | None:intergenic | 30.0% | |
| GTAATTTCAATACTCCTACA+GGG | + | chr4.4:50104216-50104235 | None:intergenic | 30.0% | |
| TAATTTCAATACTCCTACAG+GGG | + | chr4.4:50104215-50104234 | None:intergenic | 30.0% | |
| TACAAATGATAGTTCGTGAA+TGG | + | chr4.4:50104059-50104078 | None:intergenic | 30.0% | |
| TATTGGTGCAGGATAATTAT+TGG | + | chr4.4:50104882-50104901 | None:intergenic | 30.0% | |
| TGTAATTTCAATACTCCTAC+AGG | + | chr4.4:50104217-50104236 | None:intergenic | 30.0% | |
| TGTTGATACATTCAACTCAA+GGG | - | chr4.4:50101564-50101583 | MS.gene88199:intron | 30.0% | |
| TTCAGTGTAGTTATATGTGT+CGG | - | chr4.4:50101486-50101505 | MS.gene88199:intron | 30.0% | |
| TTCTTTCGAGAAAACAATCA+GGG | - | chr4.4:50105714-50105733 | MS.gene88199:intron | 30.0% | |
| TTGTTGATACATTCAACTCA+AGG | - | chr4.4:50101563-50101582 | MS.gene88199:intron | 30.0% | |
| TTTAGTGAGTAATGTAGATG+AGG | - | chr4.4:50102690-50102709 | MS.gene88199:intron | 30.0% | |
| ! | AACTTTTCGTTAAGGGATAA+TGG | + | chr4.4:50103181-50103200 | None:intergenic | 30.0% |
| ! | AGCTTTTAATATTAAGGGCT+AGG | + | chr4.4:50101771-50101790 | None:intergenic | 30.0% |
| ! | AGTTTCCAACTTTTCGTTAA+GGG | + | chr4.4:50103188-50103207 | None:intergenic | 30.0% |
| ! | ATGTCTTATTCCAGTAAGTT+GGG | - | chr4.4:50101019-50101038 | MS.gene88199:CDS | 30.0% |
| ! | CCAACCATTTAAAATTCACT+AGG | + | chr4.4:50104643-50104662 | None:intergenic | 30.0% |
| ! | CCTAGTGAATTTTAAATGGT+TGG | - | chr4.4:50104640-50104659 | MS.gene88199:intron | 30.0% |
| ! | GAAGCCTAGTGAATTTTAAA+TGG | - | chr4.4:50104636-50104655 | MS.gene88199:intron | 30.0% |
| ! | GAATTGAAAGGTGTAACAAT+TGG | + | chr4.4:50100559-50100578 | None:intergenic | 30.0% |
| ! | GCTTTTAATATTAAGGGCTA+GGG | + | chr4.4:50101770-50101789 | None:intergenic | 30.0% |
| ! | GTTTAACGGCTTAATCTTTT+GGG | - | chr4.4:50102074-50102093 | MS.gene88199:intron | 30.0% |
| ! | TCAATCTTCGTTGCTTATTT+TGG | - | chr4.4:50105437-50105456 | MS.gene88199:intron | 30.0% |
| ! | TGTCTTGCAAACATTTTTGA+AGG | - | chr4.4:50102714-50102733 | MS.gene88199:intron | 30.0% |
| ! | TTCATGCCTACAAATTTGTT+GGG | - | chr4.4:50102448-50102467 | MS.gene88199:intron | 30.0% |
| ! | TTTTCTCGAAAGAATCACTA+AGG | + | chr4.4:50105708-50105727 | None:intergenic | 30.0% |
| !! | AACATTAATTGGGAAGTATC+GGG | + | chr4.4:50104910-50104929 | None:intergenic | 30.0% |
| !! | GTTTGAAGTCTTAGTTTTCT+TGG | - | chr4.4:50101348-50101367 | MS.gene88199:intron | 30.0% |
| !! | TATTGTATTTCTGAAGCAGA+AGG | + | chr4.4:50100891-50100910 | None:intergenic | 30.0% |
| !!! | CGTCATCCATTTTTAAGTAT+CGG | + | chr4.4:50104722-50104741 | None:intergenic | 30.0% |
| !!! | CTTGATAGTTTTTTCTGTAC+AGG | - | chr4.4:50103581-50103600 | MS.gene88199:intron | 30.0% |
| !!! | GTCATCCATTTTTAAGTATC+GGG | + | chr4.4:50104721-50104740 | None:intergenic | 30.0% |
| !!! | TCATCCATTTTTAAGTATCG+GGG | + | chr4.4:50104720-50104739 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTTCATTTGGACC+TGG | - | chr4.4:50103131-50103150 | MS.gene88199:intron | 30.0% |
| AAATAGGAAGATGACTGCAA+AGG | - | chr4.4:50103101-50103120 | MS.gene88199:intron | 35.0% | |
| ACAATTCTGCACCAGTAAAT+AGG | - | chr4.4:50103085-50103104 | MS.gene88199:intron | 35.0% | |
| ACACATGTTTGATGTTTCCA+AGG | + | chr4.4:50105852-50105871 | None:intergenic | 35.0% | |
| ACGCACTTAAACAACATATG+TGG | + | chr4.4:50103836-50103855 | None:intergenic | 35.0% | |
| AGAATTACTACTTCTCTCTG+TGG | - | chr4.4:50103530-50103549 | MS.gene88199:intron | 35.0% | |
| AGGCTTCTCAGATTCAAAAA+AGG | + | chr4.4:50104623-50104642 | None:intergenic | 35.0% | |
| AGTTTAGATAACCAGAGCAT+TGG | - | chr4.4:50101309-50101328 | MS.gene88199:CDS | 35.0% | |
| ATGAAGCAAATGCTAATGCA+AGG | + | chr4.4:50102433-50102452 | None:intergenic | 35.0% | |
| ATGTTGTTAAATGGCAGTCA+TGG | - | chr4.4:50101813-50101832 | MS.gene88199:intron | 35.0% | |
| ATTTACCAATTTACCCCTGT+AGG | - | chr4.4:50104199-50104218 | MS.gene88199:intron | 35.0% | |
| CAAAAACCTCACTTTCTTGA+GGG | - | chr4.4:50105874-50105893 | MS.gene88199:intron | 35.0% | |
| CAACTTACTGGAATAAGACA+TGG | + | chr4.4:50101020-50101039 | None:intergenic | 35.0% | |
| CAATGCTCAACAAATAGAAC+AGG | - | chr4.4:50102843-50102862 | MS.gene88199:intron | 35.0% | |
| CTGCTATAAGTTATGCGATT+GGG | - | chr4.4:50103899-50103918 | MS.gene88199:intron | 35.0% | |
| CTTCATGCCTACAAATTTGT+TGG | - | chr4.4:50102447-50102466 | MS.gene88199:intron | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr4.4:50104382-50104401 | MS.gene88199:intron | 35.0% | |
| GAATTACTACTTCTCTCTGT+GGG | - | chr4.4:50103531-50103550 | MS.gene88199:intron | 35.0% | |
| GTTAACAACAGAACACTAAC+TGG | + | chr4.4:50105618-50105637 | None:intergenic | 35.0% | |
| GTTGGTCGTTGGATAAAAAT+TGG | + | chr4.4:50106046-50106065 | None:intergenic | 35.0% | |
| TATTCATCAGTTGTAGGGTT+TGG | - | chr4.4:50102493-50102512 | MS.gene88199:intron | 35.0% | |
| TATTTGTGGAACAGTTTCAC+TGG | + | chr4.4:50105537-50105556 | None:intergenic | 35.0% | |
| TCAAAAACCTCACTTTCTTG+AGG | - | chr4.4:50105873-50105892 | MS.gene88199:intron | 35.0% | |
| TCAACTATCGTTTAACACGT+TGG | - | chr4.4:50106142-50106161 | MS.gene88199:intron | 35.0% | |
| TCCACTATTCATCAGTTGTA+GGG | - | chr4.4:50102488-50102507 | MS.gene88199:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr4.4:50101455-50101474 | None:intergenic | 35.0% | |
| TCTTTCGAGAAAACAATCAG+GGG | - | chr4.4:50105715-50105734 | MS.gene88199:intron | 35.0% | |
| TGATACGTATCGGGAAATAT+CGG | + | chr4.4:50104850-50104869 | None:intergenic | 35.0% | |
| TGCTATAAGTTATGCGATTG+GGG | - | chr4.4:50103900-50103919 | MS.gene88199:intron | 35.0% | |
| TGTAAGTAGAAAAAGCGGTT+GGG | + | chr4.4:50100608-50100627 | None:intergenic | 35.0% | |
| TGTGTATGGTTTCTTTGATC+AGG | - | chr4.4:50102958-50102977 | MS.gene88199:intron | 35.0% | |
| TTAAACCAGTACTACATGTG+TGG | - | chr4.4:50104674-50104693 | MS.gene88199:intron | 35.0% | |
| TTAATCCACACATGTAGTAC+TGG | + | chr4.4:50104682-50104701 | None:intergenic | 35.0% | |
| TTATGCAGTCAGATCATTGT+TGG | + | chr4.4:50106064-50106083 | None:intergenic | 35.0% | |
| TTCTTGGATGAATACCTTGT+TGG | - | chr4.4:50101364-50101383 | MS.gene88199:intron | 35.0% | |
| TTCTTTCTAATCCAATGCTC+TGG | + | chr4.4:50101323-50101342 | None:intergenic | 35.0% | |
| TTGGGAAAGGAGAAAATGAA+GGG | + | chr4.4:50100590-50100609 | None:intergenic | 35.0% | |
| TTGTGATTTACTATGGCGAA+TGG | - | chr4.4:50102771-50102790 | MS.gene88199:intron | 35.0% | |
| ! | AAAAACAAGGCTTTTGCATG+AGG | - | chr4.4:50102183-50102202 | MS.gene88199:intron | 35.0% |
| ! | AGCACTAACAATGTTCCTTT+TGG | - | chr4.4:50105007-50105026 | MS.gene88199:intron | 35.0% |
| ! | AGTAAAGCGCTTTCAAGAAA+GGG | + | chr4.4:50106120-50106139 | None:intergenic | 35.0% |
| ! | ATCACTGATGTTGCTCTTTT+TGG | - | chr4.4:50105039-50105058 | MS.gene88199:intron | 35.0% |
| ! | ATCCTATGTTTTCGTGTCAT+TGG | - | chr4.4:50102624-50102643 | MS.gene88199:intron | 35.0% |
| ! | CAGTTTCCAACTTTTCGTTA+AGG | + | chr4.4:50103189-50103208 | None:intergenic | 35.0% |
| ! | CATGTCTTATTCCAGTAAGT+TGG | - | chr4.4:50101018-50101037 | MS.gene88199:CDS | 35.0% |
| ! | CGTTTAACGGCTTAATCTTT+TGG | - | chr4.4:50102073-50102092 | MS.gene88199:intron | 35.0% |
| ! | TAGTAAAGCGCTTTCAAGAA+AGG | + | chr4.4:50106121-50106140 | None:intergenic | 35.0% |
| ! | TATCGGTGTCTAAGTATCAA+AGG | + | chr4.4:50100799-50100818 | None:intergenic | 35.0% |
| ! | TCACTGATGTTGCTCTTTTT+GGG | - | chr4.4:50105040-50105059 | MS.gene88199:intron | 35.0% |
| ! | TGGTTTAACTTTCACCATCA+TGG | - | chr4.4:50103762-50103781 | MS.gene88199:CDS | 35.0% |
| ! | TGTGTTTTGCTTTCGTTCTA+AGG | + | chr4.4:50104115-50104134 | None:intergenic | 35.0% |
| !! | ACATTAATTGGGAAGTATCG+GGG | + | chr4.4:50104909-50104928 | None:intergenic | 35.0% |
| !! | ATTTTAATGCCCGTCTTTTC+AGG | - | chr4.4:50103876-50103895 | MS.gene88199:intron | 35.0% |
| !! | CGAATGGATTACAGAAATTC+TGG | - | chr4.4:50102787-50102806 | MS.gene88199:intron | 35.0% |
| !!! | ATGCAAAAGCCTTGTTTTTG+GGG | + | chr4.4:50102182-50102201 | None:intergenic | 35.0% |
| !!! | CAATGACTTGTTGGATTTTC+AGG | - | chr4.4:50105822-50105841 | MS.gene88199:intron | 35.0% |
| !!! | CATGCAAAAGCCTTGTTTTT+GGG | + | chr4.4:50102183-50102202 | None:intergenic | 35.0% |
| !!! | GAGCATTGATGTGTTCTTTT+TGG | - | chr4.4:50104951-50104970 | MS.gene88199:intron | 35.0% |
| !!! | TCATGCAAAAGCCTTGTTTT+TGG | + | chr4.4:50102184-50102203 | None:intergenic | 35.0% |
| !!! | TTGGATTTTCAGGTAAACCT+TGG | - | chr4.4:50105832-50105851 | MS.gene88199:intron | 35.0% |
| AAAGACCATAAATTGCTGCC+GGG | + | chr4.4:50105777-50105796 | None:intergenic | 40.0% | |
| AAGCAGAAGGAACTACTCAT+CGG | + | chr4.4:50100878-50100897 | None:intergenic | 40.0% | |
| AATCATAAAAAAGGGCAGCC+CGG | + | chr4.4:50104474-50104493 | None:intergenic | 40.0% | |
| ACCCTACAACTGATGAATAG+TGG | + | chr4.4:50102492-50102511 | None:intergenic | 40.0% | |
| AGAACATACTGAGTCAAGAG+AGG | + | chr4.4:50103392-50103411 | None:intergenic | 40.0% | |
| AGCATGATCACCTGAGAATA+TGG | - | chr4.4:50101140-50101159 | MS.gene88199:intron | 40.0% | |
| AGTACCCAAGAGTGGTTATT+AGG | - | chr4.4:50103060-50103079 | MS.gene88199:intron | 40.0% | |
| ATACTCCTACAGGGGTAAAT+TGG | + | chr4.4:50104207-50104226 | None:intergenic | 40.0% | |
| ATACTCTCCTGATACGTATC+GGG | + | chr4.4:50104790-50104809 | None:intergenic | 40.0% | |
| ATCATAGAGACTAACAGCGA+TGG | - | chr4.4:50103018-50103037 | MS.gene88199:intron | 40.0% | |
| ATCCCTTCACAAATTGGCTA+TGG | + | chr4.4:50101882-50101901 | None:intergenic | 40.0% | |
| ATCTGTCCATTAATGCAGTC+AGG | - | chr4.4:50105920-50105939 | MS.gene88199:intron | 40.0% | |
| CAAAGACCATAAATTGCTGC+CGG | + | chr4.4:50105778-50105797 | None:intergenic | 40.0% | |
| CAGTATCGTATCTTGTATCC+GGG | - | chr4.4:50105297-50105316 | MS.gene88199:intron | 40.0% | |
| CATGATCACCTGAGAATATG+GGG | - | chr4.4:50101142-50101161 | MS.gene88199:intron | 40.0% | |
| CATGGATACAGATACAGACA+CGG | - | chr4.4:50101395-50101414 | MS.gene88199:intron | 40.0% | |
| CATGTTGATACAAGAGCTGA+AGG | + | chr4.4:50105502-50105521 | None:intergenic | 40.0% | |
| CGAGAAAATCAATGTACACC+AGG | + | chr4.4:50103152-50103171 | None:intergenic | 40.0% | |
| CTAAATCCCTCAAGAAAGTG+AGG | + | chr4.4:50105883-50105902 | None:intergenic | 40.0% | |
| CTTATAGCAGCCTGAAAAGA+CGG | + | chr4.4:50103889-50103908 | None:intergenic | 40.0% | |
| GAAGCCCCGATACTTAAAAA+TGG | - | chr4.4:50104713-50104732 | MS.gene88199:intron | 40.0% | |
| GATACTCTCCTGATACGTAT+CGG | + | chr4.4:50104791-50104810 | None:intergenic | 40.0% | |
| GATATTTCCCGATACGTATC+AGG | - | chr4.4:50104849-50104868 | MS.gene88199:intron | 40.0% | |
| GCAATAGCGTGTTTGTATAG+CGG | - | chr4.4:50101927-50101946 | MS.gene88199:intron | 40.0% | |
| GCAGTATCGTATCTTGTATC+CGG | - | chr4.4:50105296-50105315 | MS.gene88199:intron | 40.0% | |
| GCAGTCATCTTCCTATTTAC+TGG | + | chr4.4:50103099-50103118 | None:intergenic | 40.0% | |
| GCATGATCACCTGAGAATAT+GGG | - | chr4.4:50101141-50101160 | MS.gene88199:intron | 40.0% | |
| GCTGCTATAAGTTATGCGAT+TGG | - | chr4.4:50103898-50103917 | MS.gene88199:intron | 40.0% | |
| GGCAGCAATTTATGGTCTTT+GGG | - | chr4.4:50105777-50105796 | MS.gene88199:intron | 40.0% | |
| GTAGACAAACATCCCAAACA+TGG | + | chr4.4:50106209-50106228 | None:intergenic | 40.0% | |
| GTATAGCACTTTCATCTCCA+AGG | - | chr4.4:50105743-50105762 | MS.gene88199:intron | 40.0% | |
| GTCCACTATTCATCAGTTGT+AGG | - | chr4.4:50102487-50102506 | MS.gene88199:intron | 40.0% | |
| GTGTAAGTAGAAAAAGCGGT+TGG | + | chr4.4:50100609-50100628 | None:intergenic | 40.0% | |
| GTTCATGACAATTGCTCTCT+GGG | - | chr4.4:50105388-50105407 | MS.gene88199:intron | 40.0% | |
| GTTGGGAAAGGAGAAAATGA+AGG | + | chr4.4:50100591-50100610 | None:intergenic | 40.0% | |
| TATCGGTGCATGATATGCAT+GGG | + | chr4.4:50104753-50104772 | None:intergenic | 40.0% | |
| TCAAAAACCTACATGCCTTG+AGG | + | chr4.4:50103441-50103460 | None:intergenic | 40.0% | |
| TCCCATAGCCAATTTGTGAA+GGG | - | chr4.4:50101877-50101896 | MS.gene88199:intron | 40.0% | |
| TCCCTTCACAAATTGGCTAT+GGG | + | chr4.4:50101881-50101900 | None:intergenic | 40.0% | |
| TCTCTTTGACCGAGTAATCA+AGG | - | chr4.4:50102124-50102143 | MS.gene88199:intron | 40.0% | |
| TGGGAAAGGAGAAAATGAAG+GGG | + | chr4.4:50100589-50100608 | None:intergenic | 40.0% | |
| TGTTCATGACAATTGCTCTC+TGG | - | chr4.4:50105387-50105406 | MS.gene88199:intron | 40.0% | |
| TTATAGCAGCCTGAAAAGAC+GGG | + | chr4.4:50103888-50103907 | None:intergenic | 40.0% | |
| ! | AACTTTCAAGTACCCAAGAG+TGG | - | chr4.4:50103052-50103071 | MS.gene88199:intron | 40.0% |
| ! | AGGAGAAAATGAAGGGGTTT+TGG | + | chr4.4:50100583-50100602 | None:intergenic | 40.0% |
| ! | ATTTGGAACTTACGCCATGA+TGG | + | chr4.4:50103779-50103798 | None:intergenic | 40.0% |
| ! | CAGGCTTCTGTTATTTGATC+AGG | - | chr4.4:50101613-50101632 | MS.gene88199:intron | 40.0% |
| ! | CGTACAATACACCGATTGAT+GGG | - | chr4.4:50104408-50104427 | MS.gene88199:intron | 40.0% |
| ! | CTTATTCCAGTAAGTTGGGT+CGG | - | chr4.4:50101023-50101042 | MS.gene88199:CDS | 40.0% |
| ! | TAATAGTGAGTTGACGAGAC+TGG | + | chr4.4:50103637-50103656 | None:intergenic | 40.0% |
| ! | TGTTTCTGCTGAGAGCTAAT+TGG | - | chr4.4:50102652-50102671 | MS.gene88199:intron | 40.0% |
| ! | TTAGAAGGCAGTGTTGTTGA+TGG | + | chr4.4:50101968-50101987 | None:intergenic | 40.0% |
| ! | TTGTTGAGCATTGTTGTCGT+CGG | + | chr4.4:50102836-50102855 | None:intergenic | 40.0% |
| !! | AGTATTGAGCGTGTGAGTTT+TGG | - | chr4.4:50102899-50102918 | MS.gene88199:intron | 40.0% |
| !! | ATTTTTCCGTATCGGCGTAT+CGG | - | chr4.4:50105272-50105291 | MS.gene88199:intron | 40.0% |
| !! | CATTCGCTTATCCCTTGTTT+TGG | - | chr4.4:50105637-50105656 | MS.gene88199:intron | 40.0% |
| !! | GCTTAATCTTTTGGGAGAAC+TGG | - | chr4.4:50102082-50102101 | MS.gene88199:intron | 40.0% |
| !! | TTTAAGTATCGGGGCTTCAT+AGG | + | chr4.4:50104711-50104730 | None:intergenic | 40.0% |
| !!! | AGGGGTTTTGGAGAATTGAA+AGG | + | chr4.4:50100571-50100590 | None:intergenic | 40.0% |
| !!! | TGGACACAGTGCTTCTTTTT+TGG | - | chr4.4:50104971-50104990 | MS.gene88199:intron | 40.0% |
| AAACACGCTATTGCAGCCTA+TGG | + | chr4.4:50101921-50101940 | None:intergenic | 45.0% | |
| ACAAACATCCCAAACATGGC+TGG | + | chr4.4:50106205-50106224 | None:intergenic | 45.0% | |
| ACACTTACCTCAAGGCATGT+AGG | - | chr4.4:50103431-50103450 | MS.gene88199:intron | 45.0% | |
| ACTTGATCCAACAGCTACCA+AGG | + | chr4.4:50105947-50105966 | None:intergenic | 45.0% | |
| AGCTCTCAGTGATGAAACAG+AGG | + | chr4.4:50100634-50100653 | None:intergenic | 45.0% | |
| AGTCGGTAACACTTACCTCA+AGG | - | chr4.4:50103423-50103442 | MS.gene88199:intron | 45.0% | |
| ATACCCTCCTGATACGTATC+GGG | + | chr4.4:50104859-50104878 | None:intergenic | 45.0% | |
| ATAGAGACTAACAGCGATGG+CGG | - | chr4.4:50103021-50103040 | MS.gene88199:intron | 45.0% | |
| ATTTCCCGATACGTATCAGG+AGG | - | chr4.4:50104852-50104871 | MS.gene88199:intron | 45.0% | |
| CAAGGTCCTGACTGCATTAA+TGG | + | chr4.4:50105929-50105948 | None:intergenic | 45.0% | |
| CACAGAATTCGCAACTGGAT+CGG | + | chr4.4:50102942-50102961 | None:intergenic | 45.0% | |
| CATCACATCCCCATATTCTC+AGG | + | chr4.4:50101153-50101172 | None:intergenic | 45.0% | |
| CATTAATGCAGTCAGGACCT+TGG | - | chr4.4:50105927-50105946 | MS.gene88199:intron | 45.0% | |
| CCAGTTGCGAATTCTGTGTA+TGG | - | chr4.4:50102944-50102963 | MS.gene88199:intron | 45.0% | |
| CCATACACAGAATTCGCAAC+TGG | + | chr4.4:50102947-50102966 | None:intergenic | 45.0% | |
| CGCCAATGACACGAAAACAT+AGG | + | chr4.4:50102629-50102648 | None:intergenic | 45.0% | |
| CGGCAGCAATTTATGGTCTT+TGG | - | chr4.4:50105776-50105795 | MS.gene88199:intron | 45.0% | |
| CTACTTCTCTCTGTGGGTAT+TGG | - | chr4.4:50103537-50103556 | MS.gene88199:intron | 45.0% | |
| CTCCCATAGCCAATTTGTGA+AGG | - | chr4.4:50101876-50101895 | MS.gene88199:intron | 45.0% | |
| CTCTCAGTGATGAAACAGAG+GGG | + | chr4.4:50100632-50100651 | None:intergenic | 45.0% | |
| GAGAAAACAATCAGGGGTAG+TGG | - | chr4.4:50105721-50105740 | MS.gene88199:intron | 45.0% | |
| GATACCCTCCTGATACGTAT+CGG | + | chr4.4:50104860-50104879 | None:intergenic | 45.0% | |
| GATACGTATCGGGAAGAATC+AGG | + | chr4.4:50104780-50104799 | None:intergenic | 45.0% | |
| GATTCTTCCCGATACGTATC+AGG | - | chr4.4:50104780-50104799 | MS.gene88199:intron | 45.0% | |
| GCAGGAATCCCTTCACAAAT+TGG | + | chr4.4:50101888-50101907 | None:intergenic | 45.0% | |
| GCGCTTTCAAGAAAGGGATT+TGG | + | chr4.4:50106114-50106133 | None:intergenic | 45.0% | |
| GCTCAGCTACCTTGATTACT+CGG | + | chr4.4:50102136-50102155 | None:intergenic | 45.0% | |
| GCTCTCAGTGATGAAACAGA+GGG | + | chr4.4:50100633-50100652 | None:intergenic | 45.0% | |
| GGAAGATGACTGCAAAGGTA+TGG | - | chr4.4:50103106-50103125 | MS.gene88199:intron | 45.0% | |
| GGGAAGAATCAGGCAAGTAT+CGG | + | chr4.4:50104770-50104789 | None:intergenic | 45.0% | |
| GTAGAAAAAGCGGTTGGGAA+AGG | + | chr4.4:50100603-50100622 | None:intergenic | 45.0% | |
| GTCAGATCATTGTTGGTCGT+TGG | + | chr4.4:50106057-50106076 | None:intergenic | 45.0% | |
| GTCGCCTAATAACCACTCTT+GGG | + | chr4.4:50103067-50103086 | None:intergenic | 45.0% | |
| GTGCTAGAAACACACTCTGT+AGG | - | chr4.4:50102334-50102353 | MS.gene88199:intron | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr4.4:50104331-50104350 | MS.gene88199:intron | 45.0% | |
| TAGCACACGATAGCATTGCA+GGG | - | chr4.4:50102229-50102248 | MS.gene88199:intron | 45.0% | |
| TCCATGCTTCATAGCCAACA+AGG | + | chr4.4:50101381-50101400 | None:intergenic | 45.0% | |
| TCTACCACATCATTCCACCT+TGG | + | chr4.4:50101844-50101863 | None:intergenic | 45.0% | |
| TCTCAGTGATGAAACAGAGG+GGG | + | chr4.4:50100631-50100650 | None:intergenic | 45.0% | |
| TCTCGTACTGCTACTACTAC+AGG | - | chr4.4:50100654-50100673 | MS.gene88199:intron | 45.0% | |
| TGAGTCTTGCTCTGTTGTCT+TGG | + | chr4.4:50103332-50103351 | None:intergenic | 45.0% | |
| TGTCGCCTAATAACCACTCT+TGG | + | chr4.4:50103068-50103087 | None:intergenic | 45.0% | |
| TTAGCACACGATAGCATTGC+AGG | - | chr4.4:50102228-50102247 | MS.gene88199:intron | 45.0% | |
| TTTCCCGATACGTATCAGGA+GGG | - | chr4.4:50104853-50104872 | MS.gene88199:intron | 45.0% | |
| ! | ACCTTGTTGGCTATGAAGCA+TGG | - | chr4.4:50101377-50101396 | MS.gene88199:intron | 45.0% |
| ! | GCGTACAATACACCGATTGA+TGG | - | chr4.4:50104407-50104426 | MS.gene88199:intron | 45.0% |
| ! | GGGGGTGTAAGTAGAAAAAG+CGG | + | chr4.4:50100613-50100632 | None:intergenic | 45.0% |
| ! | GGTATTGGATTGGGTTGTAG+CGG | - | chr4.4:50103552-50103571 | MS.gene88199:intron | 45.0% |
| ! | GTATCGGTGCATGATATGCA+TGG | + | chr4.4:50104754-50104773 | None:intergenic | 45.0% |
| !! | CTCTCTGTGGGTATTGGATT+GGG | - | chr4.4:50103543-50103562 | MS.gene88199:intron | 45.0% |
| !! | TAATTGGGAAGTATCGGGGA+AGG | + | chr4.4:50104905-50104924 | None:intergenic | 45.0% |
| !! | TAGCTTGTTTCTGTGAAGCC+CGG | + | chr4.4:50105318-50105337 | None:intergenic | 45.0% |
| !! | TCTCTCTGTGGGTATTGGAT+TGG | - | chr4.4:50103542-50103561 | MS.gene88199:intron | 45.0% |
| !! | TGCCTACAAATTTGTTGGGC+CGG | - | chr4.4:50102452-50102471 | MS.gene88199:intron | 45.0% |
| !! | AAAAAATAAAATTTAATCTT+CGG | + | chr4.4:50104813-50104832 | None:intergenic | 5.0% |
| !! | ATATACATAAAAAATTAATA+AGG | + | chr4.4:50101245-50101264 | None:intergenic | 5.0% |
| !! | TATACATAAAAAATTAATAA+GGG | + | chr4.4:50101244-50101263 | None:intergenic | 5.0% |
| !!! | TTTTTATAATATTTTGTTTT+TGG | - | chr4.4:50101090-50101109 | MS.gene88199:CDS | 5.0% |
| AACATGGCTGGCACAAGCTA+AGG | + | chr4.4:50106193-50106212 | None:intergenic | 50.0% | |
| ACAACTCTACCGTTGCGTCA+AGG | + | chr4.4:50104316-50104335 | None:intergenic | 50.0% | |
| ACATGGCTGGCACAAGCTAA+GGG | + | chr4.4:50106192-50106211 | None:intergenic | 50.0% | |
| AGCTTGTGCCAGCCATGTTT+GGG | - | chr4.4:50106194-50106213 | MS.gene88199:CDS | 50.0% | |
| ATCTCCAAGGCTTGTGATCC+CGG | - | chr4.4:50105756-50105775 | MS.gene88199:intron | 50.0% | |
| ATGTAGCCGACCCAACTTAC+TGG | + | chr4.4:50101032-50101051 | None:intergenic | 50.0% | |
| CACCGGCCCAACAAATTTGT+AGG | + | chr4.4:50102457-50102476 | None:intergenic | 50.0% | |
| CACCTCAAGCCCCAAAAACA+AGG | - | chr4.4:50102170-50102189 | MS.gene88199:intron | 50.0% | |
| GTGATCCCGGCAGCAATTTA+TGG | - | chr4.4:50105769-50105788 | MS.gene88199:intron | 50.0% | |
| TGTCGTGTCTGTGTCGTGTT+TGG | + | chr4.4:50101430-50101449 | None:intergenic | 50.0% | |
| TTCGCAACTGGATCGGTACA+AGG | + | chr4.4:50102935-50102954 | None:intergenic | 50.0% | |
| TTGTGAAGGGATTCCTGCCA+TGG | - | chr4.4:50101890-50101909 | MS.gene88199:intron | 50.0% | |
| ! | ATGCGATTGGGGTCCTTTTC+AGG | - | chr4.4:50103911-50103930 | MS.gene88199:intron | 50.0% |
| ! | GAAGGCAGTGTTGTTGATGG+CGG | + | chr4.4:50101965-50101984 | None:intergenic | 50.0% |
| ! | TAGCTTGTGCCAGCCATGTT+TGG | - | chr4.4:50106193-50106212 | MS.gene88199:CDS | 50.0% |
| ! | TCCTCAGACTAGTTGTGTCC+CGG | + | chr4.4:50101526-50101545 | None:intergenic | 50.0% |
| !! | GGAAGTATCGGGGAAGGTAT+TGG | + | chr4.4:50104899-50104918 | None:intergenic | 50.0% |
| !!! | AGCCTTGTTTTTGGGGCTTG+AGG | + | chr4.4:50102175-50102194 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGGGCTTGAGGTG+AGG | + | chr4.4:50102170-50102189 | None:intergenic | 50.0% |
| AAGGTCGCGGGTTCAAGTCT+TGG | - | chr4.4:50104350-50104369 | MS.gene88199:intron | 55.0% | |
| ACACGATAGCATTGCAGGGC+CGG | - | chr4.4:50102233-50102252 | MS.gene88199:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr4.4:50104448-50104467 | None:intergenic | 55.0% | |
| AGTGGACAAAGCTCCAGCAC+CGG | + | chr4.4:50102474-50102493 | None:intergenic | 55.0% | |
| CGATTGATGGGACCTCTTCC+CGG | - | chr4.4:50104420-50104439 | MS.gene88199:intron | 55.0% | |
| CGGGAAGAGGTCCCATCAAT+CGG | + | chr4.4:50104422-50104441 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr4.4:50104447-50104466 | None:intergenic | 55.0% | |
| GAGACGCTGATACCACATCG+CGG | + | chr4.4:50102108-50102127 | None:intergenic | 55.0% | |
| GCTGCCAAGGTGGAATGATG+TGG | - | chr4.4:50101837-50101856 | MS.gene88199:intron | 55.0% | |
| GTCACGTGACTGAAAGGTCG+CGG | - | chr4.4:50104337-50104356 | MS.gene88199:intron | 55.0% | |
| TCACGTGACTGAAAGGTCGC+GGG | - | chr4.4:50104338-50104357 | MS.gene88199:intron | 55.0% | |
| TGAAGGGATTCCTGCCATGG+CGG | - | chr4.4:50101893-50101912 | MS.gene88199:intron | 55.0% | |
| ! | ACCGGGACACAACTAGTCTG+AGG | - | chr4.4:50101522-50101541 | MS.gene88199:intron | 55.0% |
| ! | ACTGCACCGATACGCCGATA+CGG | + | chr4.4:50105281-50105300 | None:intergenic | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr4.4:50104452-50104471 | MS.gene88199:intron | 55.0% |
| ! | GTCAGGACCTTGGTAGCTGT+TGG | - | chr4.4:50105937-50105956 | MS.gene88199:intron | 55.0% |
| !! | ATCGGGGAAGGTATTGGTGC+AGG | + | chr4.4:50104893-50104912 | None:intergenic | 55.0% |
| !! | CAAATTTGTTGGGCCGGTGC+TGG | - | chr4.4:50102458-50102477 | MS.gene88199:intron | 55.0% |
| !! | GCAGTGTTGTTGATGGCGGA+AGG | + | chr4.4:50101961-50101980 | None:intergenic | 55.0% |
| GTCGGACACGTGTCTGACAC+CGG | - | chr4.4:50101504-50101523 | MS.gene88199:intron | 60.0% | |
| TAGGGGGAGCCTTGACGCAA+CGG | - | chr4.4:50104304-50104323 | MS.gene88199:intron | 60.0% | |
| TCGGACACGTGTCTGACACC+GGG | - | chr4.4:50101505-50101524 | MS.gene88199:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr4.4:50104453-50104472 | MS.gene88199:intron | 60.0% |
| CAGTCATGGCGCTGCCAAGG+TGG | - | chr4.4:50101827-50101846 | MS.gene88199:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+AGG | + | chr4.4:50104435-50104454 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr4.4:50104435-50104454 | MS.gene88199:intron | 65.0% | |
| GCTGCCGGGATCACAAGCCT+TGG | + | chr4.4:50105763-50105782 | None:intergenic | 65.0% | |
| TGCAGCCTATGGCACCGCCA+TGG | + | chr4.4:50101910-50101929 | None:intergenic | 65.0% | |
| TGGCAGTCATGGCGCTGCCA+AGG | - | chr4.4:50101824-50101843 | MS.gene88199:intron | 65.0% | |
| TGGGAGAACTGGCCGCGATG+TGG | - | chr4.4:50102093-50102112 | MS.gene88199:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr4.4:50104436-50104455 | MS.gene88199:intron | 65.0% | |
| !! | TCCTGCCATGGCGGTGCCAT+AGG | - | chr4.4:50101902-50101921 | MS.gene88199:intron | 65.0% |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr4.4:50104441-50104460 | None:intergenic | 70.0% | |
| GCCTATGGCACCGCCATGGC+AGG | + | chr4.4:50101906-50101925 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr4.4:50104442-50104461 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50100534 | 50106300 | 50100534 | ID=MS.gene88199 |
| chr4.4 | mRNA | 50100534 | 50106300 | 50100534 | ID=MS.gene88199.t1;Parent=MS.gene88199 |
| chr4.4 | exon | 50106159 | 50106300 | 50106159 | ID=MS.gene88199.t1.exon1;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50106159 | 50106300 | 50106159 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50103970 | 50104139 | 50103970 | ID=MS.gene88199.t1.exon2;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50103970 | 50104139 | 50103970 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50103712 | 50103816 | 50103712 | ID=MS.gene88199.t1.exon3;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50103712 | 50103816 | 50103712 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50103454 | 50103510 | 50103454 | ID=MS.gene88199.t1.exon4;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50103454 | 50103510 | 50103454 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50103232 | 50103312 | 50103232 | ID=MS.gene88199.t1.exon5;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50103232 | 50103312 | 50103232 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50102902 | 50102936 | 50102902 | ID=MS.gene88199.t1.exon6;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50102902 | 50102936 | 50102902 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50101255 | 50101344 | 50101255 | ID=MS.gene88199.t1.exon7;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50101255 | 50101344 | 50101255 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50100991 | 50101150 | 50100991 | ID=MS.gene88199.t1.exon8;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50100991 | 50101150 | 50100991 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| chr4.4 | exon | 50100534 | 50100638 | 50100534 | ID=MS.gene88199.t1.exon9;Parent=MS.gene88199.t1 |
| chr4.4 | CDS | 50100534 | 50100638 | 50100534 | ID=cds.MS.gene88199.t1;Parent=MS.gene88199.t1 |
| Gene Sequence |
| Protein sequence |
