Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88237.t1 | AES88313.2 | 98.4 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 4.10E-64 | 253.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88237.t1 | G7JIE4 | 98.4 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 3.0e-64 | 253.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060122 | MS.gene88237 | 0.80487 | 1.76E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88237.t1 | MTR_4g053290 | 98.425 | 127 | 2 | 0 | 1 | 127 | 3 | 129 | 6.56e-92 | 261 |
| MS.gene88237.t1 | MTR_1g054455 | 38.043 | 92 | 57 | 0 | 8 | 99 | 30 | 121 | 2.95e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88237.t1 | AT5G18250 | 69.600 | 125 | 34 | 1 | 4 | 124 | 7 | 131 | 1.08e-61 | 185 |
| MS.gene88237.t1 | AT3G04040 | 70.000 | 120 | 34 | 1 | 8 | 125 | 15 | 134 | 1.76e-59 | 180 |
| MS.gene88237.t1 | AT2G41945 | 36.957 | 92 | 58 | 0 | 8 | 99 | 30 | 121 | 2.77e-16 | 70.9 |
| MS.gene88237.t1 | AT2G41945 | 36.957 | 92 | 58 | 0 | 8 | 99 | 30 | 121 | 3.97e-16 | 70.5 |
| MS.gene88237.t1 | AT2G41945 | 34.568 | 81 | 53 | 0 | 8 | 88 | 30 | 110 | 1.33e-11 | 59.3 |
Find 26 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATATTGCTCCCCTTATT+AGG | 0.141962 | 4.4:-49199569 | MS.gene88237:CDS |
| CTTCGCAGGAAACTAGTAAA+TGG | 0.304094 | 4.4:-49199590 | MS.gene88237:intron |
| GAATATTGCTCCCCTTATTA+GGG | 0.327230 | 4.4:-49199568 | MS.gene88237:CDS |
| TTTACATATCTATGGACAAT+TGG | 0.386180 | 4.4:+49198383 | None:intergenic |
| GGCACTACAAGTGCATTCTA+TGG | 0.399068 | 4.4:-49199318 | MS.gene88237:CDS |
| ATTGTCCATAGATATGTAAA+AGG | 0.428830 | 4.4:-49198380 | MS.gene88237:CDS |
| ACGGAGGAGAATACTATAAC+AGG | 0.435912 | 4.4:+49197070 | None:intergenic |
| TTGTAGATTGGTTCTGCTGT+TGG | 0.451825 | 4.4:-49199342 | MS.gene88237:intron |
| CTCCTCCGTATGTGCAGGAC+TGG | 0.490974 | 4.4:-49197056 | MS.gene88237:CDS |
| TCCGTATGTGCAGGACTGGC+AGG | 0.496468 | 4.4:-49197052 | MS.gene88237:intron |
| ACCTGCCAGTCCTGCACATA+CGG | 0.498913 | 4.4:+49197051 | None:intergenic |
| TAGATTGGTTCTGCTGTTGG+TGG | 0.512853 | 4.4:-49199339 | MS.gene88237:CDS |
| GCATTCTATGGATTCAATCA+TGG | 0.519596 | 4.4:-49199306 | MS.gene88237:intron |
| AGGTCCGCTTTCAAAAGAAA+TGG | 0.527238 | 4.4:-49199700 | MS.gene88237:intron |
| GTATTCTCCTCCGTATGTGC+AGG | 0.534075 | 4.4:-49197061 | MS.gene88237:CDS |
| AGATTATTCATATTAGAGAG+TGG | 0.538606 | 4.4:+49196551 | None:intergenic |
| GAAACAAGCTGTGCTAAAGC+AGG | 0.542395 | 4.4:+49196645 | None:intergenic |
| ATTCGATGCCATCACTGTGC+AGG | 0.545287 | 4.4:-49199720 | MS.gene88237:CDS |
| AAAGCGGACCTGCACAGTGA+TGG | 0.570698 | 4.4:+49199712 | None:intergenic |
| ACAGTCATCACCTCCTTCAG+AGG | 0.608977 | 4.4:-49196604 | MS.gene88237:CDS |
| ATATGTAAAAGGACCGATGT+GGG | 0.657764 | 4.4:-49198369 | MS.gene88237:CDS |
| GATATGTAAAAGGACCGATG+TGG | 0.681263 | 4.4:-49198370 | MS.gene88237:CDS |
| ACGAGAAAATGTACCCACAT+CGG | 0.682623 | 4.4:+49198356 | None:intergenic |
| GAGGAGAATACTATAACAGG+TGG | 0.695435 | 4.4:+49197073 | None:intergenic |
| TGCCAGTCCTGCACATACGG+AGG | 0.696167 | 4.4:+49197054 | None:intergenic |
| GAGGTGATGACTGTGATGCG+TGG | 0.717865 | 4.4:+49196613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAATTTATTTATGTA+TGG | - | chr4.4:49199000-49199019 | MS.gene88237:intron | 10.0% |
| !! | CATAAATAAATTTCATATAA+AGG | + | chr4.4:49198998-49199017 | None:intergenic | 10.0% |
| !!! | CAATAATTTTTTAATAAAAC+AGG | + | chr4.4:49198810-49198829 | None:intergenic | 10.0% |
| !!! | CTGTTTTATTAAAAAATTAT+TGG | - | chr4.4:49198808-49198827 | MS.gene88237:intron | 10.0% |
| !! | AATAAAATGATATATGTTAG+AGG | + | chr4.4:49198613-49198632 | None:intergenic | 15.0% |
| !! | AATAAATTTCATATAAAGGA+TGG | + | chr4.4:49198994-49199013 | None:intergenic | 15.0% |
| !! | TGATGAAATAAATGAAAAAA+AGG | + | chr4.4:49198001-49198020 | None:intergenic | 15.0% |
| !!! | ATTTGTTTGATTTTTTTATG+TGG | - | chr4.4:49196879-49196898 | MS.gene88237:intron | 15.0% |
| !!! | TTATAATATTAACTTTTCCA+TGG | - | chr4.4:49197510-49197529 | MS.gene88237:intron | 15.0% |
| !!! | TTGATTAATTTTTTGTAGAT+TGG | - | chr4.4:49196947-49196966 | MS.gene88237:intron | 15.0% |
| !!! | TTTGTTTGATTTTTTTATGT+GGG | - | chr4.4:49196880-49196899 | MS.gene88237:intron | 15.0% |
| !! | AAAATGTATAAATGAGCAAA+TGG | + | chr4.4:49198059-49198078 | None:intergenic | 20.0% |
| !! | ACAATCAAAACCTAAAAAAA+AGG | + | chr4.4:49196914-49196933 | None:intergenic | 20.0% |
| !! | AGTCTAACTAATAGTAATTA+TGG | + | chr4.4:49197673-49197692 | None:intergenic | 20.0% |
| !! | ATCATACAGAAGAATAAATT+TGG | + | chr4.4:49198881-49198900 | None:intergenic | 20.0% |
| !! | ATGAAAAAAACCAAAAAGTT+AGG | + | chr4.4:49196814-49196833 | None:intergenic | 20.0% |
| !! | ATGAATAATGATAGTATAAG+TGG | + | chr4.4:49197864-49197883 | None:intergenic | 20.0% |
| !! | TAATATAAAAGAGAAAGCAA+GGG | + | chr4.4:49198491-49198510 | None:intergenic | 20.0% |
| !! | TGAAATAAATGAAAAAAAGG+TGG | + | chr4.4:49197998-49198017 | None:intergenic | 20.0% |
| !! | TTAATATAAAAGAGAAAGCA+AGG | + | chr4.4:49198492-49198511 | None:intergenic | 20.0% |
| !! | TTTGACAAGAAATAAGAAAT+GGG | + | chr4.4:49196789-49196808 | None:intergenic | 20.0% |
| !!! | AAAAGCACAAATATTTTACA+AGG | + | chr4.4:49198838-49198857 | None:intergenic | 20.0% |
| !!! | AGGTTTTGATTGTTAATTAA+GGG | - | chr4.4:49196921-49196940 | MS.gene88237:intron | 20.0% |
| !!! | ATGTATAAGGTCTTTTTTAT+AGG | - | chr4.4:49197262-49197281 | MS.gene88237:intron | 20.0% |
| !!! | CTTCCTTTTTTTAAAAATCA+TGG | - | chr4.4:49198228-49198247 | MS.gene88237:intron | 20.0% |
| !!! | GATATATAATTTGTAGATAG+AGG | - | chr4.4:49197693-49197712 | MS.gene88237:intron | 20.0% |
| !!! | TAGGTTTTGATTGTTAATTA+AGG | - | chr4.4:49196920-49196939 | MS.gene88237:intron | 20.0% |
| !!! | TATAATTTGTAAGAGAATCA+TGG | - | chr4.4:49198571-49198590 | MS.gene88237:intron | 20.0% |
| !!! | TCTCCATGATTTTTAAAAAA+AGG | + | chr4.4:49198234-49198253 | None:intergenic | 20.0% |
| !!! | TGTATAAGGTCTTTTTTATA+GGG | - | chr4.4:49197263-49197282 | MS.gene88237:intron | 20.0% |
| !!! | TTATTTTTCTCCAAATCAAT+GGG | - | chr4.4:49198283-49198302 | MS.gene88237:intron | 20.0% |
| !!! | TTTTCATGTTTAATTGTTGT+GGG | - | chr4.4:49196827-49196846 | MS.gene88237:intron | 20.0% |
| !!! | TTTTGACAAGAAATAAGAAA+TGG | + | chr4.4:49196790-49196809 | None:intergenic | 20.0% |
| !!! | TTTTTCATGTTTAATTGTTG+TGG | - | chr4.4:49196826-49196845 | MS.gene88237:intron | 20.0% |
| ! | AAATCGTCACTAATATTTAC+AGG | + | chr4.4:49197347-49197366 | None:intergenic | 25.0% |
| ! | AACTTATTACAATACCAAGT+TGG | + | chr4.4:49199305-49199324 | None:intergenic | 25.0% |
| ! | AATGAAATCAAAAGAGGAAA+AGG | + | chr4.4:49196679-49196698 | None:intergenic | 25.0% |
| ! | ACAAATATGATTACGTAAGT+TGG | + | chr4.4:49198771-49198790 | None:intergenic | 25.0% |
| ! | AGAAAAACTATCCCTAATAA+GGG | + | chr4.4:49196747-49196766 | None:intergenic | 25.0% |
| ! | ATGAAATCAAAAGAGGAAAA+GGG | + | chr4.4:49196678-49196697 | None:intergenic | 25.0% |
| ! | ATTGTCCATAGATATGTAAA+AGG | - | chr4.4:49197921-49197940 | MS.gene88237:intron | 25.0% |
| ! | CTAATATTTACAGGCATATT+AGG | + | chr4.4:49197338-49197357 | None:intergenic | 25.0% |
| ! | GAAAAAGGAATACATATAGT+GGG | + | chr4.4:49198029-49198048 | None:intergenic | 25.0% |
| ! | GAGAATAATGAAATCAAAAG+AGG | + | chr4.4:49196685-49196704 | None:intergenic | 25.0% |
| ! | GCAAATGGATAAAATGAAAA+AGG | + | chr4.4:49198044-49198063 | None:intergenic | 25.0% |
| ! | GGCAAAATAGATCAATATTA+TGG | + | chr4.4:49197737-49197756 | None:intergenic | 25.0% |
| ! | TAAATTTGGAGACAATTCAT+TGG | + | chr4.4:49198867-49198886 | None:intergenic | 25.0% |
| ! | TAACGTTGCATAAATGTATA+AGG | - | chr4.4:49197249-49197268 | MS.gene88237:intron | 25.0% |
| ! | TAATCATATTTGTTTCCGTT+TGG | - | chr4.4:49198778-49198797 | MS.gene88237:intron | 25.0% |
| ! | TAGAAAAACTATCCCTAATA+AGG | + | chr4.4:49196748-49196767 | None:intergenic | 25.0% |
| ! | TATACATTTATGCAACGTTA+TGG | + | chr4.4:49197249-49197268 | None:intergenic | 25.0% |
| ! | TCAAGAAATCATTAAGTATG+AGG | + | chr4.4:49198082-49198101 | None:intergenic | 25.0% |
| ! | TCATACTTAATGATTTCTTG+AGG | - | chr4.4:49198081-49198100 | MS.gene88237:intron | 25.0% |
| ! | TGAAAAAAAGGTGGATAAAA+TGG | + | chr4.4:49197989-49198008 | None:intergenic | 25.0% |
| ! | TGAAAAAGGAATACATATAG+TGG | + | chr4.4:49198030-49198049 | None:intergenic | 25.0% |
| ! | TTGACAAGAAATAAGAAATG+GGG | + | chr4.4:49196788-49196807 | None:intergenic | 25.0% |
| ! | TTTACATATCTATGGACAAT+TGG | + | chr4.4:49197921-49197940 | None:intergenic | 25.0% |
| ! | TTTGTTTATATGGATATCTC+CGG | - | chr4.4:49199035-49199054 | MS.gene88237:intron | 25.0% |
| !! | AGAGTTTTCAATTAGTTAGA+TGG | + | chr4.4:49199194-49199213 | None:intergenic | 25.0% |
| !! | TATTAGGGATAGTTTTTCTA+TGG | - | chr4.4:49196748-49196767 | MS.gene88237:intron | 25.0% |
| !! | TCAAACTAAATGACGTTTTA+TGG | - | chr4.4:49197567-49197586 | MS.gene88237:intron | 25.0% |
| !! | TTGTCAAAATCCTAACTTTT+TGG | - | chr4.4:49196801-49196820 | MS.gene88237:intron | 25.0% |
| !!! | ATTACCATTTCTTTTGAAAG+CGG | + | chr4.4:49196608-49196627 | None:intergenic | 25.0% |
| !!! | CATCTTTAGTGTTTTTGAAA+AGG | + | chr4.4:49198739-49198758 | None:intergenic | 25.0% |
| !!! | CTTATTTTTCTCCAAATCAA+TGG | - | chr4.4:49198282-49198301 | MS.gene88237:intron | 25.0% |
| !!! | CTTTGAATTTTTTTTCCAAG+AGG | - | chr4.4:49198701-49198720 | MS.gene88237:intron | 25.0% |
| !!! | GGTTGTTTTTCCTTTTTTTT+AGG | - | chr4.4:49196901-49196920 | MS.gene88237:intron | 25.0% |
| !!! | GGTTTTGATTGTTAATTAAG+GGG | - | chr4.4:49196922-49196941 | MS.gene88237:intron | 25.0% |
| !!! | TTGATAACGTGAGAAATTTT+AGG | + | chr4.4:49199342-49199361 | None:intergenic | 25.0% |
| AAAACCATGCTGTAAAATAG+TGG | - | chr4.4:49197052-49197071 | MS.gene88237:intron | 30.0% | |
| AAATCCATTGTTGTCAATCA+CGG | + | chr4.4:49199578-49199597 | None:intergenic | 30.0% | |
| AATCAGCTTACTGTTATCAT+AGG | + | chr4.4:49198539-49198558 | None:intergenic | 30.0% | |
| ACCCAATAAGAACTATTTCA+AGG | + | chr4.4:49198370-49198389 | None:intergenic | 30.0% | |
| AGTGGTAAAATGCAATTGAT+AGG | + | chr4.4:49198679-49198698 | None:intergenic | 30.0% | |
| ATAAAGGACAAAAAAAGCCT+AGG | - | chr4.4:49197603-49197622 | MS.gene88237:intron | 30.0% | |
| ATAGCAGCTATGTACTAAAT+TGG | + | chr4.4:49199497-49199516 | None:intergenic | 30.0% | |
| ATATAAACAAAACACGAACG+TGG | + | chr4.4:49199026-49199045 | None:intergenic | 30.0% | |
| ATCAGCTTACTGTTATCATA+GGG | + | chr4.4:49198538-49198557 | None:intergenic | 30.0% | |
| CAGTACAATATTGTAAACCA+TGG | + | chr4.4:49197530-49197549 | None:intergenic | 30.0% | |
| CATGGTTTACAATATTGTAC+TGG | - | chr4.4:49197528-49197547 | MS.gene88237:intron | 30.0% | |
| CCCAATAAGAACTATTTCAA+GGG | + | chr4.4:49198369-49198388 | None:intergenic | 30.0% | |
| CCCTTGAAATAGTTCTTATT+GGG | - | chr4.4:49198366-49198385 | MS.gene88237:CDS | 30.0% | |
| CTAACTAATTGAAAACTCTC+TGG | - | chr4.4:49199195-49199214 | MS.gene88237:intron | 30.0% | |
| CTTGGTAAATCTTTATCAGA+AGG | + | chr4.4:49199404-49199423 | None:intergenic | 30.0% | |
| GAAAAAAAATTCAAAGCCAG+TGG | + | chr4.4:49198697-49198716 | None:intergenic | 30.0% | |
| GAAAAACTATCCCTAATAAG+GGG | + | chr4.4:49196746-49196765 | None:intergenic | 30.0% | |
| GAAACTTCATACTTTCAGTT+TGG | + | chr4.4:49197833-49197852 | None:intergenic | 30.0% | |
| GTGATATTTCACTTACACTT+AGG | - | chr4.4:49197388-49197407 | MS.gene88237:intron | 30.0% | |
| GTGGTAAAATGCAATTGATA+GGG | + | chr4.4:49198678-49198697 | None:intergenic | 30.0% | |
| TAAAACAGGATTGATCCAAA+CGG | + | chr4.4:49198796-49198815 | None:intergenic | 30.0% | |
| TAATCTGATAAACATTGCCT+AGG | + | chr4.4:49197623-49197642 | None:intergenic | 30.0% | |
| TAGCAGCTATGTACTAAATT+GGG | + | chr4.4:49199496-49199515 | None:intergenic | 30.0% | |
| TATTTCACTTACACTTAGGT+TGG | - | chr4.4:49197392-49197411 | MS.gene88237:intron | 30.0% | |
| TCCCTTGAAATAGTTCTTAT+TGG | - | chr4.4:49198365-49198384 | MS.gene88237:CDS | 30.0% | |
| TTATGTATTGTGGTATCGTT+TGG | - | chr4.4:49198948-49198967 | MS.gene88237:intron | 30.0% | |
| TTATTCTCTTTAATCTTCGC+AGG | - | chr4.4:49196697-49196716 | MS.gene88237:intron | 30.0% | |
| ! | AATACCAAGTTGGCAAAATA+AGG | + | chr4.4:49199295-49199314 | None:intergenic | 30.0% |
| ! | AATATGATTACGTAAGTTGG+TGG | + | chr4.4:49198768-49198787 | None:intergenic | 30.0% |
| ! | CTGAAAGTATGAAGTTTCAT+TGG | - | chr4.4:49197835-49197854 | MS.gene88237:intron | 30.0% |
| ! | GTCTTTCTTTTCAAAAATGC+AGG | - | chr4.4:49199623-49199642 | MS.gene88237:intron | 30.0% |
| ! | TATCAATTGCATTTTACCAC+TGG | - | chr4.4:49198678-49198697 | MS.gene88237:intron | 30.0% |
| ! | TATGGTTTGTAGAATTGACA+AGG | + | chr4.4:49197655-49197674 | None:intergenic | 30.0% |
| ! | TTTCTTTTCAAAAATGCAGG+CGG | - | chr4.4:49199626-49199645 | MS.gene88237:intron | 30.0% |
| !!! | ACGTTCGTGTTTTGTTTATA+TGG | - | chr4.4:49199025-49199044 | MS.gene88237:intron | 30.0% |
| !!! | TTTTCCTTATTTTGCCAACT+TGG | - | chr4.4:49199288-49199307 | MS.gene88237:intron | 30.0% |
| ACAAGAAATAAGAAATGGGG+TGG | + | chr4.4:49196785-49196804 | None:intergenic | 35.0% | |
| ACTATGACAACGAGATGTTT+AGG | + | chr4.4:49198151-49198170 | None:intergenic | 35.0% | |
| AGGTGACTAAAATTTCCTCT+TGG | + | chr4.4:49198719-49198738 | None:intergenic | 35.0% | |
| ATATGTAAAAGGACCGATGT+GGG | - | chr4.4:49197932-49197951 | MS.gene88237:intron | 35.0% | |
| ATGTCCTAGACATGCAAAAA+TGG | + | chr4.4:49198399-49198418 | None:intergenic | 35.0% | |
| CATAGCAGAAATACTACTAG+GGG | - | chr4.4:49199133-49199152 | MS.gene88237:intron | 35.0% | |
| CATGATGATTTGAACTTGTG+TGG | - | chr4.4:49197431-49197450 | MS.gene88237:intron | 35.0% | |
| CATGTTTAATTGTTGTGGGT+TGG | - | chr4.4:49196831-49196850 | MS.gene88237:intron | 35.0% | |
| CTTATTTCAGCAAAACTTGC+TGG | - | chr4.4:49199161-49199180 | MS.gene88237:intron | 35.0% | |
| GAATATTGCTCCCCTTATTA+GGG | - | chr4.4:49196733-49196752 | MS.gene88237:intron | 35.0% | |
| GCATAGCAGAAATACTACTA+GGG | - | chr4.4:49199132-49199151 | MS.gene88237:intron | 35.0% | |
| GCATTCTATGGATTCAATCA+TGG | - | chr4.4:49196995-49197014 | MS.gene88237:intron | 35.0% | |
| GGTATATATTTGTCACTCAC+TGG | - | chr4.4:49198102-49198121 | MS.gene88237:intron | 35.0% | |
| TCAATTTCGGTGGGATAATT+TGG | - | chr4.4:49199074-49199093 | MS.gene88237:intron | 35.0% | |
| TCACACATTCATCACATGAA+TGG | + | chr4.4:49197758-49197777 | None:intergenic | 35.0% | |
| TCTAATTCTGTCATCAACTG+TGG | - | chr4.4:49196855-49196874 | MS.gene88237:intron | 35.0% | |
| TCTAGACAAACTGTTGTGTT+AGG | - | chr4.4:49197164-49197183 | MS.gene88237:intron | 35.0% | |
| TGCATACCTATAACTCTCTA+AGG | + | chr4.4:49198422-49198441 | None:intergenic | 35.0% | |
| TGGCTCAATGTGAATGATAA+AGG | - | chr4.4:49197587-49197606 | MS.gene88237:intron | 35.0% | |
| TGTACTGGATGTTAGACTAT+GGG | - | chr4.4:49197543-49197562 | MS.gene88237:intron | 35.0% | |
| TTGTACTGGATGTTAGACTA+TGG | - | chr4.4:49197542-49197561 | MS.gene88237:intron | 35.0% | |
| ! | ATCAACTTCTCCCATTGATT+TGG | + | chr4.4:49198296-49198315 | None:intergenic | 35.0% |
| ! | CATACTTTCAGTTTGGAACA+CGG | + | chr4.4:49197826-49197845 | None:intergenic | 35.0% |
| ! | GGACAAATGATTTCTTTTGC+AGG | + | chr4.4:49198348-49198367 | None:intergenic | 35.0% |
| ! | GTAGCAGAATTTTCACAAAC+CGG | - | chr4.4:49199455-49199474 | MS.gene88237:intron | 35.0% |
| ! | TACCAAGTGTTGTCAAATAC+TGG | - | chr4.4:49199417-49199436 | MS.gene88237:intron | 35.0% |
| ! | TATGGCTACTTTCGATATCA+CGG | + | chr4.4:49197719-49197738 | None:intergenic | 35.0% |
| ! | TCAAAAGAGGAAAAGGGTAT+TGG | + | chr4.4:49196672-49196691 | None:intergenic | 35.0% |
| ! | TCGGTCCTTTTACATATCTA+TGG | + | chr4.4:49197929-49197948 | None:intergenic | 35.0% |
| ! | TGAATCTTTTCATCCTCTGA+AGG | + | chr4.4:49199713-49199732 | None:intergenic | 35.0% |
| ! | TTCTTTTCAAAAATGCAGGC+GGG | - | chr4.4:49199627-49199646 | MS.gene88237:intron | 35.0% |
| !! | TGAACCATTTTTGCATGTCT+AGG | - | chr4.4:49198392-49198411 | MS.gene88237:intron | 35.0% |
| !!! | AGATATTTTTAGCCTGTGTC+TGG | - | chr4.4:49198251-49198270 | MS.gene88237:intron | 35.0% |
| AAAGGTGGATAAAATGGCTC+AGG | + | chr4.4:49197983-49198002 | None:intergenic | 40.0% | |
| ACGAGAAAATGTACCCACAT+CGG | + | chr4.4:49197948-49197967 | None:intergenic | 40.0% | |
| ACGGAGGAGAATACTATAAC+AGG | + | chr4.4:49199234-49199253 | None:intergenic | 40.0% | |
| AGCCAGTATTTGACAACACT+TGG | + | chr4.4:49199422-49199441 | None:intergenic | 40.0% | |
| AGGTCCGCTTTCAAAAGAAA+TGG | - | chr4.4:49196601-49196620 | MS.gene88237:CDS | 40.0% | |
| CGCATAGCAGAAATACTACT+AGG | - | chr4.4:49199131-49199150 | MS.gene88237:intron | 40.0% | |
| CTCAAACATTCGATTCCTCT+GGG | - | chr4.4:49197119-49197138 | MS.gene88237:intron | 40.0% | |
| CTTCGCAGGAAACTAGTAAA+TGG | - | chr4.4:49196711-49196730 | MS.gene88237:intron | 40.0% | |
| GACTGCTCTCTCAATATCAT+TGG | + | chr4.4:49198453-49198472 | None:intergenic | 40.0% | |
| GAGGAGAATACTATAACAGG+TGG | + | chr4.4:49199231-49199250 | None:intergenic | 40.0% | |
| GATATGTAAAAGGACCGATG+TGG | - | chr4.4:49197931-49197950 | MS.gene88237:intron | 40.0% | |
| GATTCTCTCCGTGTCAATTT+CGG | - | chr4.4:49199061-49199080 | MS.gene88237:intron | 40.0% | |
| GCTGCAGTCATTATGTATTG+TGG | - | chr4.4:49198938-49198957 | MS.gene88237:intron | 40.0% | |
| GGAATATTGCTCCCCTTATT+AGG | - | chr4.4:49196732-49196751 | MS.gene88237:intron | 40.0% | |
| GGACATCCTTAGAGAGTTAT+AGG | - | chr4.4:49198413-49198432 | MS.gene88237:intron | 40.0% | |
| GTGTGTATGCAGTATTCATG+AGG | + | chr4.4:49198638-49198657 | None:intergenic | 40.0% | |
| TGATCCGTGATTGACAACAA+TGG | - | chr4.4:49199571-49199590 | MS.gene88237:CDS | 40.0% | |
| TTATCCCACCGAAATTGACA+CGG | + | chr4.4:49199072-49199091 | None:intergenic | 40.0% | |
| ! | ACTGCCACTATTTTACAGCA+TGG | + | chr4.4:49197059-49197078 | None:intergenic | 40.0% |
| ! | ATGTGGGTACATTTTCTCGT+TGG | - | chr4.4:49197948-49197967 | MS.gene88237:intron | 40.0% |
| ! | TCTTTTCAAAAATGCAGGCG+GGG | - | chr4.4:49199628-49199647 | MS.gene88237:intron | 40.0% |
| ! | TGGGTATTGCAGAACAATAC+CGG | + | chr4.4:49199477-49199496 | None:intergenic | 40.0% |
| !! | ATCTTTTCATCCTCTGAAGG+AGG | + | chr4.4:49199710-49199729 | None:intergenic | 40.0% |
| !! | TTGTAGATTGGTTCTGCTGT+TGG | - | chr4.4:49196959-49196978 | MS.gene88237:intron | 40.0% |
| AGAGTGATGAAGTTGCGAAG+TGG | + | chr4.4:49196634-49196653 | None:intergenic | 45.0% | |
| AGTTTGTCTAGACCCAACCT+AGG | + | chr4.4:49197156-49197175 | None:intergenic | 45.0% | |
| CCAGAGGAATCGAATGTTTG+AGG | + | chr4.4:49197121-49197140 | None:intergenic | 45.0% | |
| CCTCAAACATTCGATTCCTC+TGG | - | chr4.4:49197118-49197137 | MS.gene88237:intron | 45.0% | |
| GAAACAAGCTGTGCTAAAGC+AGG | + | chr4.4:49199659-49199678 | None:intergenic | 45.0% | |
| GAGTGATGAAGTTGCGAAGT+GGG | + | chr4.4:49196633-49196652 | None:intergenic | 45.0% | |
| GCGCTAACAATTCCTAGGTT+GGG | - | chr4.4:49197141-49197160 | MS.gene88237:intron | 45.0% | |
| GGCACTACAAGTGCATTCTA+TGG | - | chr4.4:49196983-49197002 | MS.gene88237:intron | 45.0% | |
| !! | AAGAGAAAGCAAGGGTGTCT+AGG | + | chr4.4:49198483-49198502 | None:intergenic | 45.0% |
| !! | TAAGAAGAGTGTCCAGACAC+AGG | + | chr4.4:49198266-49198285 | None:intergenic | 45.0% |
| !! | TAGATTGGTTCTGCTGTTGG+TGG | - | chr4.4:49196962-49196981 | MS.gene88237:intron | 45.0% |
| ACAACCAAACCAACCCTGGA+GGG | + | chr4.4:49197086-49197105 | None:intergenic | 50.0% | |
| ACAGTCATCACCTCCTTCAG+AGG | - | chr4.4:49199697-49199716 | MS.gene88237:intron | 50.0% | |
| ATTCGATGCCATCACTGTGC+AGG | - | chr4.4:49196581-49196600 | MS.gene88237:CDS | 50.0% | |
| CTACACAACCAAACCAACCC+TGG | + | chr4.4:49197090-49197109 | None:intergenic | 50.0% | |
| CTCTCCGTGTCAATTTCGGT+GGG | - | chr4.4:49199065-49199084 | MS.gene88237:intron | 50.0% | |
| GAGAGCAGTGTTGTCAATCG+TGG | + | chr4.4:49197194-49197213 | None:intergenic | 50.0% | |
| GGCGCTAACAATTCCTAGGT+TGG | - | chr4.4:49197140-49197159 | MS.gene88237:intron | 50.0% | |
| GTATTCTCCTCCGTATGTGC+AGG | - | chr4.4:49199240-49199259 | MS.gene88237:intron | 50.0% | |
| TAGGAATTGTTAGCGCCCAG+AGG | + | chr4.4:49197137-49197156 | None:intergenic | 50.0% | |
| TCTCTCCGTGTCAATTTCGG+TGG | - | chr4.4:49199064-49199083 | MS.gene88237:intron | 50.0% | |
| TCTGGGCGCTAACAATTCCT+AGG | - | chr4.4:49197136-49197155 | MS.gene88237:intron | 50.0% | |
| TGACACGGAGAGAATCGAAC+CGG | + | chr4.4:49199057-49199076 | None:intergenic | 50.0% | |
| !! | CAGGGTTGGTTTGGTTGTGT+AGG | - | chr4.4:49197088-49197107 | MS.gene88237:intron | 50.0% |
| AAAGCGGACCTGCACAGTGA+TGG | + | chr4.4:49196592-49196611 | None:intergenic | 55.0% | |
| ACCTGCCAGTCCTGCACATA+CGG | + | chr4.4:49199253-49199272 | None:intergenic | 55.0% | |
| AGTGGCAGTAGAACCCTCCA+GGG | - | chr4.4:49197070-49197089 | MS.gene88237:CDS | 55.0% | |
| CACAACCAAACCAACCCTGG+AGG | + | chr4.4:49197087-49197106 | None:intergenic | 55.0% | |
| GAGGTGATGACTGTGATGCG+TGG | + | chr4.4:49199691-49199710 | None:intergenic | 55.0% | |
| TAGTGGCAGTAGAACCCTCC+AGG | - | chr4.4:49197069-49197088 | MS.gene88237:CDS | 55.0% | |
| !! | AGAACCCTCCAGGGTTGGTT+TGG | - | chr4.4:49197079-49197098 | MS.gene88237:CDS | 55.0% |
| CTCCTCCGTATGTGCAGGAC+TGG | - | chr4.4:49199245-49199264 | MS.gene88237:intron | 60.0% | |
| GCAGTAGAACCCTCCAGGGT+TGG | - | chr4.4:49197074-49197093 | MS.gene88237:CDS | 60.0% | |
| TGCCAGTCCTGCACATACGG+AGG | + | chr4.4:49199250-49199269 | None:intergenic | 60.0% | |
| ! | TCCGTATGTGCAGGACTGGC+AGG | - | chr4.4:49199249-49199268 | MS.gene88237:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 49196563 | 49199760 | 49196563 | ID=MS.gene88237 |
| chr4.4 | mRNA | 49196563 | 49199760 | 49196563 | ID=MS.gene88237.t1;Parent=MS.gene88237 |
| chr4.4 | exon | 49199701 | 49199760 | 49199701 | ID=MS.gene88237.t1.exon1;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49199701 | 49199760 | 49199701 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| chr4.4 | exon | 49199554 | 49199604 | 49199554 | ID=MS.gene88237.t1.exon2;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49199554 | 49199604 | 49199554 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| chr4.4 | exon | 49199307 | 49199358 | 49199307 | ID=MS.gene88237.t1.exon3;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49199307 | 49199358 | 49199307 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| chr4.4 | exon | 49198352 | 49198410 | 49198352 | ID=MS.gene88237.t1.exon4;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49198352 | 49198410 | 49198352 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| chr4.4 | exon | 49197053 | 49197098 | 49197053 | ID=MS.gene88237.t1.exon5;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49197053 | 49197098 | 49197053 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| chr4.4 | exon | 49196563 | 49196678 | 49196563 | ID=MS.gene88237.t1.exon6;Parent=MS.gene88237.t1 |
| chr4.4 | CDS | 49196563 | 49196678 | 49196563 | ID=cds.MS.gene88237.t1;Parent=MS.gene88237.t1 |
| Gene Sequence |
| Protein sequence |
