Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88285.t1 | ABD83946.1 | 93.9 | 263 | 16 | 0 | 1 | 263 | 1 | 263 | 1.90E-138 | 501.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88285.t1 | Q84KK6 | 77.9 | 267 | 55 | 2 | 1 | 263 | 1 | 267 | 6.9e-118 | 424.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88285.t1 | Q06YR0 | 93.9 | 263 | 16 | 0 | 1 | 263 | 1 | 263 | 1.3e-138 | 501.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060791 | MS.gene88285 | 0.957246 | 4.31E-115 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88285.t1 | MTR_4g033015 | 93.916 | 263 | 16 | 0 | 1 | 263 | 1 | 263 | 0.0 | 508 |
MS.gene88285.t1 | MTR_4g033200 | 93.536 | 263 | 17 | 0 | 1 | 263 | 1 | 263 | 0.0 | 508 |
MS.gene88285.t1 | MTR_4g033150 | 89.734 | 263 | 27 | 0 | 1 | 263 | 1 | 263 | 2.43e-177 | 493 |
MS.gene88285.t1 | MTR_0794s0020 | 89.558 | 249 | 26 | 0 | 1 | 249 | 1 | 249 | 7.23e-169 | 467 |
MS.gene88285.t1 | MTR_4g033085 | 76.046 | 263 | 57 | 1 | 1 | 263 | 1 | 257 | 4.63e-149 | 421 |
MS.gene88285.t1 | MTR_4g033170 | 76.046 | 263 | 57 | 1 | 1 | 263 | 1 | 257 | 6.80e-149 | 421 |
MS.gene88285.t1 | MTR_4g088200 | 72.624 | 263 | 70 | 1 | 1 | 263 | 1 | 261 | 1.01e-140 | 400 |
MS.gene88285.t1 | MTR_4g088190 | 75.000 | 264 | 65 | 1 | 1 | 263 | 1 | 264 | 2.02e-133 | 382 |
MS.gene88285.t1 | MTR_7g014570 | 51.331 | 263 | 118 | 3 | 6 | 268 | 6 | 258 | 2.25e-87 | 264 |
MS.gene88285.t1 | MTR_7g014510 | 47.692 | 260 | 131 | 3 | 6 | 265 | 6 | 260 | 9.90e-82 | 250 |
MS.gene88285.t1 | MTR_5g074680 | 48.031 | 254 | 125 | 4 | 11 | 263 | 12 | 259 | 4.72e-78 | 241 |
MS.gene88285.t1 | MTR_5g074600 | 44.882 | 254 | 133 | 4 | 11 | 263 | 11 | 258 | 8.76e-75 | 232 |
MS.gene88285.t1 | MTR_7g024500 | 45.736 | 258 | 128 | 4 | 6 | 263 | 5 | 250 | 2.20e-74 | 231 |
MS.gene88285.t1 | MTR_5g074580 | 46.063 | 254 | 130 | 4 | 11 | 263 | 12 | 259 | 5.62e-74 | 230 |
MS.gene88285.t1 | MTR_1g076940 | 45.977 | 261 | 134 | 5 | 6 | 263 | 6 | 262 | 1.11e-73 | 229 |
MS.gene88285.t1 | MTR_4g088345 | 48.819 | 254 | 121 | 4 | 11 | 263 | 11 | 256 | 1.96e-72 | 226 |
MS.gene88285.t1 | MTR_7g024520 | 44.574 | 258 | 131 | 4 | 6 | 263 | 5 | 250 | 3.09e-69 | 218 |
MS.gene88285.t1 | MTR_4g079160 | 43.701 | 254 | 134 | 3 | 11 | 263 | 10 | 255 | 6.58e-69 | 217 |
MS.gene88285.t1 | MTR_5g074610 | 45.455 | 253 | 105 | 3 | 11 | 263 | 7 | 226 | 1.62e-68 | 215 |
MS.gene88285.t1 | MTR_5g074540 | 41.732 | 254 | 123 | 5 | 11 | 263 | 11 | 240 | 1.07e-65 | 208 |
MS.gene88285.t1 | MTR_4g088340 | 46.888 | 241 | 119 | 4 | 24 | 263 | 1 | 233 | 8.47e-64 | 203 |
MS.gene88285.t1 | MTR_1g076930 | 45.306 | 245 | 123 | 6 | 24 | 264 | 1 | 238 | 1.39e-62 | 197 |
MS.gene88285.t1 | MTR_4g038440 | 33.962 | 265 | 165 | 5 | 3 | 264 | 14 | 271 | 1.13e-38 | 136 |
MS.gene88285.t1 | MTR_3g083620 | 35.510 | 245 | 147 | 6 | 20 | 263 | 27 | 261 | 5.98e-37 | 134 |
MS.gene88285.t1 | MTR_4g038440 | 33.712 | 264 | 165 | 5 | 3 | 263 | 14 | 270 | 6.28e-37 | 134 |
MS.gene88285.t1 | MTR_0017s0100 | 33.333 | 264 | 166 | 5 | 3 | 263 | 14 | 270 | 4.20e-36 | 132 |
MS.gene88285.t1 | MTR_0079s0070 | 34.025 | 241 | 149 | 5 | 26 | 263 | 3 | 236 | 1.14e-32 | 122 |
MS.gene88285.t1 | MTR_7g012090 | 31.174 | 247 | 156 | 6 | 32 | 268 | 40 | 282 | 2.91e-30 | 117 |
MS.gene88285.t1 | MTR_7g012020 | 32.353 | 238 | 152 | 6 | 32 | 264 | 39 | 272 | 1.12e-29 | 114 |
MS.gene88285.t1 | MTR_7g012020 | 32.231 | 242 | 155 | 6 | 32 | 268 | 39 | 276 | 1.83e-29 | 114 |
MS.gene88285.t1 | MTR_7g011990 | 31.579 | 247 | 147 | 7 | 32 | 268 | 40 | 274 | 1.68e-28 | 112 |
MS.gene88285.t1 | MTR_7g011900 | 31.818 | 242 | 156 | 6 | 32 | 268 | 40 | 277 | 1.77e-28 | 112 |
MS.gene88285.t1 | MTR_7g012070 | 30.769 | 247 | 157 | 7 | 32 | 268 | 40 | 282 | 2.01e-28 | 112 |
MS.gene88285.t1 | MTR_7g012040 | 30.705 | 241 | 159 | 6 | 32 | 268 | 39 | 275 | 2.00e-27 | 108 |
MS.gene88285.t1 | MTR_1g036460 | 29.880 | 251 | 165 | 6 | 25 | 268 | 30 | 276 | 1.67e-26 | 106 |
MS.gene88285.t1 | MTR_1g096310 | 29.851 | 268 | 173 | 7 | 8 | 268 | 20 | 279 | 3.03e-26 | 105 |
MS.gene88285.t1 | MTR_8g068870 | 31.349 | 252 | 162 | 7 | 18 | 263 | 19 | 265 | 4.34e-25 | 102 |
MS.gene88285.t1 | MTR_1g036490 | 30.952 | 252 | 161 | 8 | 25 | 268 | 30 | 276 | 1.13e-24 | 101 |
MS.gene88285.t1 | MTR_5g098170 | 34.298 | 242 | 141 | 11 | 31 | 263 | 33 | 265 | 9.44e-24 | 99.0 |
MS.gene88285.t1 | MTR_2g072790 | 32.773 | 238 | 146 | 6 | 31 | 263 | 27 | 255 | 1.71e-23 | 98.2 |
MS.gene88285.t1 | MTR_2g055940 | 29.461 | 241 | 162 | 6 | 32 | 268 | 34 | 270 | 3.44e-23 | 97.4 |
MS.gene88285.t1 | MTR_3g096050 | 32.258 | 248 | 151 | 9 | 23 | 264 | 24 | 260 | 5.00e-22 | 92.4 |
MS.gene88285.t1 | MTR_0591s0010 | 30.453 | 243 | 160 | 6 | 26 | 263 | 41 | 279 | 6.21e-22 | 94.4 |
MS.gene88285.t1 | MTR_1g036510 | 29.555 | 247 | 163 | 6 | 25 | 264 | 44 | 286 | 1.08e-21 | 92.4 |
MS.gene88285.t1 | MTR_1g036510 | 28.400 | 250 | 170 | 4 | 25 | 268 | 44 | 290 | 3.13e-21 | 92.4 |
MS.gene88285.t1 | MTR_8g068690 | 29.388 | 245 | 164 | 6 | 26 | 265 | 40 | 280 | 6.10e-21 | 90.1 |
MS.gene88285.t1 | MTR_3g096050 | 31.984 | 247 | 151 | 9 | 23 | 263 | 24 | 259 | 6.42e-21 | 91.3 |
MS.gene88285.t1 | MTR_3g092900 | 31.086 | 267 | 154 | 9 | 9 | 263 | 17 | 265 | 8.22e-21 | 90.9 |
MS.gene88285.t1 | MTR_7g118320 | 30.328 | 244 | 159 | 8 | 26 | 263 | 26 | 264 | 1.11e-20 | 90.5 |
MS.gene88285.t1 | MTR_8g068750 | 30.041 | 243 | 161 | 6 | 26 | 263 | 41 | 279 | 1.36e-20 | 90.5 |
MS.gene88285.t1 | MTR_7g012020 | 31.429 | 210 | 135 | 6 | 32 | 236 | 39 | 244 | 2.19e-20 | 87.8 |
MS.gene88285.t1 | MTR_8g068690 | 29.218 | 243 | 163 | 6 | 26 | 263 | 40 | 278 | 3.24e-20 | 89.4 |
MS.gene88285.t1 | MTR_3g021440 | 29.388 | 245 | 165 | 6 | 28 | 268 | 38 | 278 | 4.97e-19 | 85.9 |
MS.gene88285.t1 | MTR_8g068600 | 29.004 | 231 | 155 | 6 | 38 | 263 | 27 | 253 | 8.03e-19 | 84.3 |
MS.gene88285.t1 | MTR_7g118300 | 28.455 | 246 | 158 | 6 | 26 | 263 | 42 | 277 | 3.40e-18 | 83.6 |
MS.gene88285.t1 | MTR_8g068570 | 28.807 | 243 | 137 | 7 | 26 | 263 | 41 | 252 | 3.29e-17 | 80.1 |
MS.gene88285.t1 | MTR_3g096070 | 29.675 | 246 | 135 | 10 | 23 | 263 | 24 | 236 | 1.36e-16 | 78.6 |
MS.gene88285.t1 | MTR_3g021430 | 27.731 | 238 | 164 | 6 | 32 | 265 | 29 | 262 | 2.23e-16 | 78.2 |
MS.gene88285.t1 | MTR_8g068620 | 36.036 | 111 | 69 | 1 | 153 | 263 | 2 | 110 | 1.82e-15 | 71.2 |
MS.gene88285.t1 | MTR_4g025570 | 41.748 | 103 | 50 | 4 | 6 | 108 | 16 | 108 | 1.23e-14 | 71.6 |
MS.gene88285.t1 | MTR_8g024160 | 30.539 | 167 | 111 | 3 | 98 | 263 | 68 | 230 | 1.03e-13 | 70.5 |
MS.gene88285.t1 | MTR_1g036510 | 27.397 | 219 | 148 | 6 | 25 | 236 | 44 | 258 | 3.56e-13 | 68.2 |
MS.gene88285.t1 | MTR_6g078850 | 25.573 | 262 | 179 | 7 | 9 | 263 | 33 | 285 | 3.75e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88285.t1 | AT5G54160 | 33.333 | 243 | 139 | 7 | 31 | 263 | 34 | 263 | 8.00e-25 | 102 |
MS.gene88285.t1 | AT4G35160 | 32.171 | 258 | 154 | 8 | 16 | 263 | 29 | 275 | 9.08e-25 | 102 |
MS.gene88285.t1 | AT4G35150 | 28.685 | 251 | 129 | 7 | 16 | 263 | 15 | 218 | 1.12e-24 | 100 |
MS.gene88285.t1 | AT3G53140 | 33.878 | 245 | 139 | 10 | 31 | 263 | 27 | 260 | 4.98e-24 | 99.8 |
MS.gene88285.t1 | AT1G77520 | 30.453 | 243 | 155 | 6 | 31 | 263 | 44 | 282 | 5.45e-23 | 97.1 |
MS.gene88285.t1 | AT5G53810 | 29.098 | 244 | 158 | 6 | 31 | 263 | 40 | 279 | 6.02e-17 | 80.1 |
MS.gene88285.t1 | AT1G51990 | 26.891 | 238 | 161 | 6 | 33 | 263 | 32 | 263 | 6.15e-17 | 80.1 |
MS.gene88285.t1 | AT1G63140 | 27.407 | 270 | 177 | 8 | 9 | 264 | 39 | 303 | 1.59e-16 | 78.2 |
MS.gene88285.t1 | AT1G33030 | 28.216 | 241 | 158 | 9 | 31 | 264 | 21 | 253 | 2.53e-16 | 77.0 |
MS.gene88285.t1 | AT1G33030 | 28.216 | 241 | 158 | 9 | 31 | 264 | 21 | 253 | 3.47e-16 | 76.6 |
MS.gene88285.t1 | AT1G51990 | 26.891 | 238 | 161 | 6 | 33 | 263 | 32 | 263 | 3.57e-16 | 77.8 |
MS.gene88285.t1 | AT1G63140 | 27.138 | 269 | 177 | 8 | 9 | 263 | 19 | 282 | 1.15e-15 | 76.3 |
MS.gene88285.t1 | AT1G63140 | 27.138 | 269 | 177 | 8 | 9 | 263 | 39 | 302 | 1.23e-15 | 76.6 |
MS.gene88285.t1 | AT1G77530 | 30.041 | 243 | 156 | 6 | 31 | 263 | 44 | 282 | 1.32e-15 | 76.3 |
MS.gene88285.t1 | AT1G33030 | 26.778 | 239 | 162 | 7 | 31 | 263 | 21 | 252 | 2.40e-15 | 75.5 |
Find 55 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCAAGAGGAGAGACATTT+TGG | 0.134700 | 4.3:-67410156 | MS.gene88285:CDS |
TGTATATATGTTTGTATAGA+TGG | 0.289789 | 4.3:+67410557 | None:intergenic |
TAGCCATGTGTTTGAAGGTT+TGG | 0.322024 | 4.3:-67410035 | MS.gene88285:CDS |
CTCAGTGAGCCATTTGTTAG+AGG | 0.332609 | 4.3:+67410204 | None:intergenic |
TAAAGGACACTAACTTTAGA+AGG | 0.352110 | 4.3:+67410418 | None:intergenic |
GCTAATTCTGTAAGAGTCAT+TGG | 0.355375 | 4.3:+67410460 | None:intergenic |
GATGAAAATTTGAAATTTGT+TGG | 0.393974 | 4.3:-67409893 | MS.gene88285:CDS |
GTTGATGTTGGAGGTGGGAC+AGG | 0.396355 | 4.3:-67410004 | MS.gene88285:CDS |
TGAGGTGAGGAAAAGTTTCA+TGG | 0.410589 | 4.3:+67409963 | None:intergenic |
GAGTATAGCCATGTGTTTGA+AGG | 0.421443 | 4.3:-67410040 | MS.gene88285:CDS |
CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4.3:+67410295 | None:intergenic |
TCCCTGGTTGATGTTGGAGG+TGG | 0.450465 | 4.3:-67410010 | MS.gene88285:CDS |
CTCAAATCTGCTGTGGAACT+AGG | 0.472122 | 4.3:-67410514 | MS.gene88285:CDS |
GATGTTGGAGGTGGGACAGG+AGG | 0.486832 | 4.3:-67410001 | MS.gene88285:CDS |
GTTTGAAGGTTTGGAGTCCC+TGG | 0.488507 | 4.3:-67410026 | MS.gene88285:CDS |
GATCAAATACTATGCATTTG+AGG | 0.496242 | 4.3:+67409945 | None:intergenic |
CAGGTTGTAAGTAACTTGTC+TGG | 0.502887 | 4.3:-67409917 | MS.gene88285:CDS |
GCAAACGCAAGAGACGATAA+AGG | 0.507273 | 4.3:+67410401 | None:intergenic |
TTGGAGTCCCTGGTTGATGT+TGG | 0.509648 | 4.3:-67410016 | MS.gene88285:CDS |
CACAGCAGATTTGAGTGCCA+TGG | 0.511000 | 4.3:+67410522 | None:intergenic |
AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 4.3:-67410169 | MS.gene88285:CDS |
TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 4.3:+67410253 | None:intergenic |
ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4.3:-67410349 | MS.gene88285:CDS |
TGTGGCACTCCTCTAACAAA+TGG | 0.518573 | 4.3:-67410213 | MS.gene88285:CDS |
GAGTCCCTGGTTGATGTTGG+AGG | 0.529815 | 4.3:-67410013 | MS.gene88285:CDS |
GAAAATTTGAAATTTGTTGG+TGG | 0.531638 | 4.3:-67409890 | MS.gene88285:CDS |
TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 4.3:-67410262 | MS.gene88285:CDS |
ATCCATGCCGTCTGAACGTG+TGG | 0.545741 | 4.3:-67410231 | MS.gene88285:CDS |
CCCTGGTTGATGTTGGAGGT+GGG | 0.547433 | 4.3:-67410009 | MS.gene88285:CDS |
ATACAGCTTTATAAATTCCA+TGG | 0.553200 | 4.3:-67410539 | MS.gene88285:CDS |
TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4.3:+67409845 | None:intergenic |
TCCCACCTCCAACATCAACC+AGG | 0.558273 | 4.3:+67410008 | None:intergenic |
CATAGTATTTGATCAACCAC+AGG | 0.564742 | 4.3:-67409936 | MS.gene88285:CDS |
GAGTATGTTTCAAGAGGCCA+TGG | 0.566423 | 4.3:-67410098 | MS.gene88285:CDS |
GACAAGTTACTTACAACCTG+TGG | 0.570330 | 4.3:+67409920 | None:intergenic |
CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4.3:-67410295 | MS.gene88285:CDS |
CAAATGGATTTCAAGTGCAA+TGG | 0.577941 | 4.3:-67410613 | MS.gene88285:CDS |
CAAATGGCTCACTGAGGACA+AGG | 0.577988 | 4.3:-67410197 | MS.gene88285:CDS |
TGCCACACGTTCAGACGGCA+TGG | 0.581336 | 4.3:+67410229 | None:intergenic |
GATTTGAGAATCAGCTGCCA+TGG | 0.584730 | 4.3:+67410081 | None:intergenic |
CATGGCACTCAAATCTGCTG+TGG | 0.591711 | 4.3:-67410521 | MS.gene88285:CDS |
AATACTATGCATTTGAGGTG+AGG | 0.599469 | 4.3:+67409950 | None:intergenic |
TTGCGTTTGCTAACACACAA+TGG | 0.605432 | 4.3:-67410388 | MS.gene88285:CDS |
GGACACTAACTTTAGAAGGG+TGG | 0.612811 | 4.3:+67410422 | None:intergenic |
AGGAGTGCCACACGTTCAGA+CGG | 0.616722 | 4.3:+67410224 | None:intergenic |
AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4.3:+67409848 | None:intergenic |
AGGGTGGAGTTTCAAAGATG+AGG | 0.627418 | 4.3:+67410438 | None:intergenic |
TGAACTGAGTATGTTTCAAG+AGG | 0.628302 | 4.3:-67410104 | MS.gene88285:CDS |
AAAGGACACTAACTTTAGAA+GGG | 0.634971 | 4.3:+67410419 | None:intergenic |
GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4.3:-67410487 | MS.gene88285:CDS |
ACTCCAAACCTTCAAACACA+TGG | 0.661101 | 4.3:+67410032 | None:intergenic |
CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4.3:+67410298 | None:intergenic |
CCCACCTCCAACATCAACCA+GGG | 0.674030 | 4.3:+67410009 | None:intergenic |
GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4.3:+67409849 | None:intergenic |
CTCTAACAAATGGCTCACTG+AGG | 0.728882 | 4.3:-67410203 | MS.gene88285:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTATATATGTTTGTATAGA+TGG | + | chr4.3:67409873-67409892 | None:intergenic | 20.0% |
!!! | GATGAAAATTTGAAATTTGT+TGG | - | chr4.3:67410534-67410553 | MS.gene88285:CDS | 20.0% |
!! | ATACAGCTTTATAAATTCCA+TGG | - | chr4.3:67409888-67409907 | MS.gene88285:CDS | 25.0% |
!!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4.3:67410537-67410556 | MS.gene88285:CDS | 25.0% |
GATCAAATACTATGCATTTG+AGG | + | chr4.3:67410485-67410504 | None:intergenic | 30.0% | |
TAAAGGACACTAACTTTAGA+AGG | + | chr4.3:67410012-67410031 | None:intergenic | 30.0% | |
! | AAAGGACACTAACTTTAGAA+GGG | + | chr4.3:67410011-67410030 | None:intergenic | 30.0% |
CATAGTATTTGATCAACCAC+AGG | - | chr4.3:67410491-67410510 | MS.gene88285:CDS | 35.0% | |
GCAAAAACAACACTGATGAA+TGG | - | chr4.3:67410069-67410088 | MS.gene88285:CDS | 35.0% | |
GCTAATTCTGTAAGAGTCAT+TGG | + | chr4.3:67409970-67409989 | None:intergenic | 35.0% | |
TGAACTGAGTATGTTTCAAG+AGG | - | chr4.3:67410323-67410342 | MS.gene88285:CDS | 35.0% | |
! | AATACTATGCATTTGAGGTG+AGG | + | chr4.3:67410480-67410499 | None:intergenic | 35.0% |
! | TGTTTGTCACCATTTGTTAG+CGG | - | chr4.3:67410165-67410184 | MS.gene88285:CDS | 35.0% |
!!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4.3:67409960-67409979 | None:intergenic | 35.0% |
ACACTGATGAATGGCAAAGA+AGG | - | chr4.3:67410078-67410097 | MS.gene88285:CDS | 40.0% | |
ACTCCAAACCTTCAAACACA+TGG | + | chr4.3:67410398-67410417 | None:intergenic | 40.0% | |
GACAAGTTACTTACAACCTG+TGG | + | chr4.3:67410510-67410529 | None:intergenic | 40.0% | |
GAGTATAGCCATGTGTTTGA+AGG | - | chr4.3:67410387-67410406 | MS.gene88285:CDS | 40.0% | |
TAGCCATGTGTTTGAAGGTT+TGG | - | chr4.3:67410392-67410411 | MS.gene88285:CDS | 40.0% | |
TGAGGTGAGGAAAAGTTTCA+TGG | + | chr4.3:67410467-67410486 | None:intergenic | 40.0% | |
TTGAGTAAAACAGCATCTGC+AGG | + | chr4.3:67410585-67410604 | None:intergenic | 40.0% | |
! | CAGGTTGTAAGTAACTTGTC+TGG | - | chr4.3:67410510-67410529 | MS.gene88285:CDS | 40.0% |
! | TTGCGTTTGCTAACACACAA+TGG | - | chr4.3:67410039-67410058 | MS.gene88285:CDS | 40.0% |
!!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4.3:67409954-67409973 | None:intergenic | 40.0% |
!!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4.3:67410584-67410603 | MS.gene88285:CDS | 40.0% |
AGGGTGGAGTTTCAAAGATG+AGG | + | chr4.3:67409992-67410011 | None:intergenic | 45.0% | |
AGTAAAACAGCATCTGCAGG+AGG | + | chr4.3:67410582-67410601 | None:intergenic | 45.0% | |
CCTTCAATGCTTCTCATCAG+TGG | - | chr4.3:67410132-67410151 | MS.gene88285:CDS | 45.0% | |
CTCAAATCTGCTGTGGAACT+AGG | - | chr4.3:67409913-67409932 | MS.gene88285:CDS | 45.0% | |
CTCTAACAAATGGCTCACTG+AGG | - | chr4.3:67410224-67410243 | MS.gene88285:CDS | 45.0% | |
GAGTATGTTTCAAGAGGCCA+TGG | - | chr4.3:67410329-67410348 | MS.gene88285:CDS | 45.0% | |
GATTTGAGAATCAGCTGCCA+TGG | + | chr4.3:67410349-67410368 | None:intergenic | 45.0% | |
GCAAACGCAAGAGACGATAA+AGG | + | chr4.3:67410029-67410048 | None:intergenic | 45.0% | |
GTAAAACAGCATCTGCAGGA+GGG | + | chr4.3:67410581-67410600 | None:intergenic | 45.0% | |
TGTGGCACTCCTCTAACAAA+TGG | - | chr4.3:67410214-67410233 | MS.gene88285:CDS | 45.0% | |
! | CGCAAGAGGAGAGACATTTT+GGG | - | chr4.3:67410272-67410291 | MS.gene88285:CDS | 45.0% |
! | CTCAGTGAGCCATTTGTTAG+AGG | + | chr4.3:67410226-67410245 | None:intergenic | 45.0% |
! | GGACACTAACTTTAGAAGGG+TGG | + | chr4.3:67410008-67410027 | None:intergenic | 45.0% |
! | TGAAGCACTCCGCTAACAAA+TGG | + | chr4.3:67410177-67410196 | None:intergenic | 45.0% |
!! | CCACTGATGAGAAGCATTGA+AGG | + | chr4.3:67410135-67410154 | None:intergenic | 45.0% |
!! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4.3:67410132-67410151 | None:intergenic | 45.0% |
CAAATGGCTCACTGAGGACA+AGG | - | chr4.3:67410230-67410249 | MS.gene88285:CDS | 50.0% | |
CACAGCAGATTTGAGTGCCA+TGG | + | chr4.3:67409908-67409927 | None:intergenic | 50.0% | |
CATGGCACTCAAATCTGCTG+TGG | - | chr4.3:67409906-67409925 | MS.gene88285:CDS | 50.0% | |
GCAGATGCAATCCACAACCA+TGG | - | chr4.3:67409940-67409959 | MS.gene88285:CDS | 50.0% | |
! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4.3:67410258-67410277 | MS.gene88285:CDS | 50.0% |
! | GCGCAAGAGGAGAGACATTT+TGG | - | chr4.3:67410271-67410290 | MS.gene88285:CDS | 50.0% |
! | GTTTGAAGGTTTGGAGTCCC+TGG | - | chr4.3:67410401-67410420 | MS.gene88285:CDS | 50.0% |
! | TTGGAGTCCCTGGTTGATGT+TGG | - | chr4.3:67410411-67410430 | MS.gene88285:CDS | 50.0% |
ATCCATGCCGTCTGAACGTG+TGG | - | chr4.3:67410196-67410215 | MS.gene88285:CDS | 55.0% | |
CCCACCTCCAACATCAACCA+GGG | + | chr4.3:67410421-67410440 | None:intergenic | 55.0% | |
GTTGATGTTGGAGGTGGGAC+AGG | - | chr4.3:67410423-67410442 | MS.gene88285:CDS | 55.0% | |
TCCCACCTCCAACATCAACC+AGG | + | chr4.3:67410422-67410441 | None:intergenic | 55.0% | |
! | CCCTGGTTGATGTTGGAGGT+GGG | - | chr4.3:67410418-67410437 | MS.gene88285:CDS | 55.0% |
! | GAGTCCCTGGTTGATGTTGG+AGG | - | chr4.3:67410414-67410433 | MS.gene88285:CDS | 55.0% |
! | TCCCTGGTTGATGTTGGAGG+TGG | - | chr4.3:67410417-67410436 | MS.gene88285:CDS | 55.0% |
!! | AGGAGTGCCACACGTTCAGA+CGG | + | chr4.3:67410206-67410225 | None:intergenic | 55.0% |
GATGTTGGAGGTGGGACAGG+AGG | - | chr4.3:67410426-67410445 | MS.gene88285:CDS | 60.0% | |
TGCCACACGTTCAGACGGCA+TGG | + | chr4.3:67410201-67410220 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 67409817 | 67410632 | 67409817 | ID=MS.gene88285 |
chr4.3 | mRNA | 67409817 | 67410632 | 67409817 | ID=MS.gene88285.t1;Parent=MS.gene88285 |
chr4.3 | exon | 67409817 | 67410632 | 67409817 | ID=MS.gene88285.t1.exon1;Parent=MS.gene88285.t1 |
chr4.3 | CDS | 67409817 | 67410632 | 67409817 | ID=cds.MS.gene88285.t1;Parent=MS.gene88285.t1 |
Gene Sequence |
Protein sequence |