AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88286

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88286.t1 MTR_4g033170 90.712 323 12 2 1 311 1 317 0.0 559
MS.gene88286.t1 MTR_4g033085 91.331 323 10 2 1 311 1 317 0.0 547
MS.gene88286.t1 MTR_4g033200 74.074 324 70 3 1 311 1 323 9.77e-175 488
MS.gene88286.t1 MTR_4g088200 73.926 326 71 2 1 314 1 324 3.82e-174 487
MS.gene88286.t1 MTR_4g033015 73.765 324 71 3 1 311 1 323 1.12e-173 486
MS.gene88286.t1 MTR_4g033150 71.914 324 77 3 1 311 1 323 9.24e-169 473
MS.gene88286.t1 MTR_4g088190 74.006 327 72 2 1 314 1 327 2.51e-161 454
MS.gene88286.t1 MTR_0794s0020 71.600 250 57 3 1 237 1 249 3.40e-127 363
MS.gene88286.t1 MTR_7g014570 45.886 316 151 3 6 310 6 312 4.12e-97 291
MS.gene88286.t1 MTR_7g014510 45.223 314 157 3 6 308 6 315 2.84e-95 286
MS.gene88286.t1 MTR_1g076940 47.003 317 151 5 5 307 5 318 1.17e-94 285
MS.gene88286.t1 MTR_4g088345 45.679 324 157 3 1 312 1 317 5.87e-91 275
MS.gene88286.t1 MTR_7g024520 44.839 310 157 4 6 308 5 307 1.09e-90 275
MS.gene88286.t1 MTR_7g024500 43.711 318 162 4 6 313 5 315 1.41e-90 274
MS.gene88286.t1 MTR_5g074680 43.385 325 163 6 4 312 2 321 6.50e-89 270
MS.gene88286.t1 MTR_5g074600 44.516 310 154 5 11 307 11 315 6.52e-88 268
MS.gene88286.t1 MTR_5g074580 42.587 317 164 6 4 307 5 316 2.73e-82 253
MS.gene88286.t1 MTR_5g074610 44.444 297 144 4 11 307 7 282 5.44e-82 251
MS.gene88286.t1 MTR_4g088340 44.333 300 148 3 24 311 1 293 1.45e-79 245
MS.gene88286.t1 MTR_5g074540 39.677 310 151 5 11 307 11 297 1.99e-76 238
MS.gene88286.t1 MTR_4g079160 40.968 310 162 5 11 307 10 311 5.04e-75 234
MS.gene88286.t1 MTR_1g076930 44.215 242 116 5 24 251 1 237 9.12e-59 189
MS.gene88286.t1 MTR_0017s0100 33.648 318 190 8 3 307 14 323 2.40e-45 158
MS.gene88286.t1 MTR_3g083620 35.099 302 170 9 20 307 27 316 7.91e-45 157
MS.gene88286.t1 MTR_4g038440 32.704 318 193 7 3 307 14 323 3.68e-44 155
MS.gene88286.t1 MTR_0079s0070 32.993 294 176 7 27 307 4 289 6.77e-40 143
MS.gene88286.t1 MTR_5g098170 33.333 267 156 8 29 278 31 292 1.26e-35 132
MS.gene88286.t1 MTR_3g092900 31.731 312 188 8 9 306 17 317 1.02e-32 124
MS.gene88286.t1 MTR_0591s0010 30.496 282 170 8 26 289 41 314 2.71e-31 121
MS.gene88286.t1 MTR_7g118300 30.403 273 173 6 26 286 42 309 3.91e-31 120
MS.gene88286.t1 MTR_7g118320 31.343 268 167 6 26 278 26 291 8.27e-31 119
MS.gene88286.t1 MTR_8g068870 28.283 297 193 7 5 286 6 297 5.24e-30 117
MS.gene88286.t1 MTR_1g096310 29.375 320 198 8 5 306 17 326 9.17e-30 117
MS.gene88286.t1 MTR_7g012040 28.889 270 171 7 32 286 39 302 6.32e-29 114
MS.gene88286.t1 MTR_8g068690 29.391 279 177 7 26 289 40 313 6.84e-29 114
MS.gene88286.t1 MTR_2g072790 32.423 293 171 8 31 307 27 308 1.09e-28 113
MS.gene88286.t1 MTR_7g011900 29.710 276 172 7 32 291 40 309 1.16e-28 114
MS.gene88286.t1 MTR_4g038440 30.534 262 164 5 3 251 14 270 2.01e-28 111
MS.gene88286.t1 MTR_7g012090 28.520 277 169 7 32 286 40 309 2.84e-28 112
MS.gene88286.t1 MTR_1g036460 29.492 295 182 8 25 300 30 317 3.11e-28 112
MS.gene88286.t1 MTR_1g036490 29.195 298 179 7 25 300 30 317 3.96e-28 112
MS.gene88286.t1 MTR_8g068750 28.772 285 183 7 26 295 41 320 5.93e-28 112
MS.gene88286.t1 MTR_8g068570 29.478 268 164 6 26 289 41 287 1.83e-27 109
MS.gene88286.t1 MTR_7g012070 28.623 276 170 7 32 286 40 309 2.73e-27 110
MS.gene88286.t1 MTR_7g012020 28.782 271 171 7 32 286 39 303 2.86e-27 110
MS.gene88286.t1 MTR_7g011990 26.619 278 181 7 32 294 40 309 1.30e-26 108
MS.gene88286.t1 MTR_8g024160 34.359 195 116 4 101 286 71 262 7.56e-26 105
MS.gene88286.t1 MTR_2g055940 29.603 277 164 9 32 288 34 299 7.73e-26 105
MS.gene88286.t1 MTR_1g036510 29.236 301 175 9 25 300 44 331 1.33e-25 105
MS.gene88286.t1 MTR_3g021440 28.713 303 177 9 28 306 38 325 1.20e-23 100
MS.gene88286.t1 MTR_6g078850 27.622 286 185 8 9 278 33 312 1.93e-22 97.8
MS.gene88286.t1 MTR_8g068730 29.730 259 151 7 26 278 41 274 9.95e-21 91.7
MS.gene88286.t1 MTR_3g021430 27.645 293 185 9 32 306 29 312 1.29e-20 91.3
MS.gene88286.t1 MTR_7g012020 27.500 240 155 6 32 255 39 275 2.03e-20 90.1
MS.gene88286.t1 MTR_3g096050 26.159 302 193 10 23 307 24 312 1.62e-18 85.5
MS.gene88286.t1 MTR_3g096070 26.207 290 185 10 23 307 24 289 4.59e-18 84.0
MS.gene88286.t1 MTR_8g068740 28.517 263 155 8 26 280 41 278 1.14e-17 82.0
MS.gene88286.t1 MTR_8g068690 25.820 244 164 6 26 254 40 281 9.70e-17 79.3
MS.gene88286.t1 MTR_1g036510 28.968 252 144 8 25 251 44 285 3.44e-16 78.2
MS.gene88286.t1 MTR_8g068600 25.217 230 155 6 38 252 27 254 5.94e-15 74.3
MS.gene88286.t1 MTR_8g068620 33.929 112 72 1 143 254 4 113 3.17e-14 68.6
MS.gene88286.t1 MTR_1g050220 24.028 283 165 9 25 300 13 252 3.89e-13 69.3
MS.gene88286.t1 MTR_7g012020 27.273 209 133 6 32 224 39 244 1.49e-12 67.0
MS.gene88286.t1 MTR_4g025570 42.857 70 37 1 6 75 16 82 2.38e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88286.t1 AT5G54160 32.639 288 176 6 31 306 34 315 1.64e-36 135
MS.gene88286.t1 AT4G35150 32.119 302 158 11 16 307 15 279 2.19e-35 131
MS.gene88286.t1 AT1G77520 32.852 277 159 8 31 286 44 314 3.22e-31 121
MS.gene88286.t1 AT4G35160 32.177 317 181 10 16 307 29 336 2.09e-30 119
MS.gene88286.t1 AT3G53140 31.208 298 173 9 31 307 27 313 1.51e-28 113
MS.gene88286.t1 AT1G33030 28.866 291 187 8 31 307 21 305 2.28e-27 110
MS.gene88286.t1 AT5G53810 31.071 280 167 7 29 287 38 312 6.07e-25 103
MS.gene88286.t1 AT1G51990 28.920 287 177 8 33 303 32 307 2.36e-24 102
MS.gene88286.t1 AT1G63140 28.431 306 191 9 9 291 19 319 3.00e-24 102
MS.gene88286.t1 AT1G63140 28.431 306 191 9 9 291 39 339 3.14e-24 102
MS.gene88286.t1 AT1G51990 28.920 287 177 8 33 303 32 307 8.37e-24 100
MS.gene88286.t1 AT1G77530 31.047 277 166 7 31 287 44 315 1.02e-23 100
MS.gene88286.t1 AT1G76790 26.364 330 194 11 7 307 9 318 1.37e-19 88.6
MS.gene88286.t1 AT1G62900 36.641 131 80 1 161 291 16 143 1.78e-19 85.5
MS.gene88286.t1 AT5G37170 30.000 150 100 3 160 307 43 189 4.36e-16 76.6
MS.gene88286.t1 AT5G37170 30.000 150 100 3 160 307 143 289 7.90e-16 77.4
MS.gene88286.t1 AT5G37170 32.824 131 80 4 182 307 14 141 4.41e-15 72.8
MS.gene88286.t1 AT1G33030 27.660 235 153 7 31 251 21 252 1.41e-14 72.8
MS.gene88286.t1 AT1G21130 24.252 301 190 10 31 307 40 326 1.84e-14 73.9
MS.gene88286.t1 AT1G33030 27.660 235 153 7 31 251 21 252 2.78e-14 72.4
MS.gene88286.t1 AT1G21120 23.920 301 191 10 31 307 88 374 2.82e-14 73.6
MS.gene88286.t1 AT1G21120 23.920 301 191 10 31 307 40 326 2.84e-14 73.2
MS.gene88286.t1 AT1G21100 24.252 301 190 10 31 307 40 326 5.93e-14 72.4
MS.gene88286.t1 AT1G21110 22.591 301 195 9 31 307 40 326 1.38e-13 71.2
MS.gene88286.t1 AT1G63140 25.940 266 172 8 9 251 39 302 9.05e-12 65.5

Find 62 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATACATGTTTGTATAAA+TGG 0.137435 4.3:+67433518 None:intergenic
CTCAGAGAACCATTTCTTAG+AGG 0.269041 4.3:+67433165 None:intergenic
TATAGGACACTAACTTTAGA+AGG 0.276793 4.3:+67433379 None:intergenic
TTCAAAGATGAGGCTAATTC+AGG 0.277863 4.3:+67433409 None:intergenic
CAGCCATGTGTTTGAGGGTT+TGG 0.284838 4.3:-67432998 MS.gene88286:CDS
GTTTGAGGGTTTGGAGTCTT+TGG 0.303653 4.3:-67432989 MS.gene88286:CDS
AACAGCAAAGAAGCTATTTC+AGG 0.318216 4.3:-67432164 MS.gene88286:CDS
GTTGATGTGGCAGGTGGGAC+TGG 0.337992 4.3:-67432967 MS.gene88286:CDS
CTAAAGTTAGTGTCCTATAT+AGG 0.347448 4.3:-67433375 MS.gene88286:CDS
AAAGAAGCTATTTCAGGAAA+AGG 0.388596 4.3:-67432158 MS.gene88286:CDS
CCACTGATGAGAAGCTTTGA+AGG 0.393766 4.3:+67433256 None:intergenic
CAGGTTGTGGCTAACTTATC+TGG 0.396383 4.3:-67432880 MS.gene88286:CDS
AATTCTTCATCCATGTTCTC+TGG 0.398747 4.3:-67433200 MS.gene88286:CDS
TCATAGGCTTTCCATGTTTG+TGG 0.399025 4.3:+67433437 None:intergenic
GATAAACTTAGTTTGTTTCA+AGG 0.401061 4.3:-67433069 MS.gene88286:CDS
CTCAAATCAGCTGTGGAACT+TGG 0.404196 4.3:-67433475 MS.gene88286:CDS
CAAAATTTGAACTTTGTTGG+TGG 0.427047 4.3:-67432853 MS.gene88286:CDS
ACTCAAAATTTGAACTTTGT+TGG 0.429435 4.3:-67432856 MS.gene88286:CDS
GCTAATTCAGGAACAGTCAT+AGG 0.442962 4.3:+67433421 None:intergenic
AATGTTCAAGCTTGCTCTCA+AGG 0.450410 4.3:-67433025 MS.gene88286:CDS
TGTGGCACTCCTCTAAGAAA+TGG 0.452397 4.3:-67433174 MS.gene88286:intron
GATTGCAGCCATGTGTTTGA+GGG 0.455193 4.3:-67433003 MS.gene88286:CDS
ATAAACTTAGTTTGTTTCAA+GGG 0.456335 4.3:-67433068 MS.gene88286:CDS
ACAACGGTGAAAGGCAAAGA+AGG 0.456389 4.3:-67433313 MS.gene88286:CDS
GCAAGCGCAAGAACCTATAT+AGG 0.464145 4.3:+67433362 None:intergenic
AGAGACTTGAAGCCACATAC+TGG 0.465897 4.3:+67431951 None:intergenic
GGATTGCAGCCATGTGTTTG+AGG 0.478258 4.3:-67433004 MS.gene88286:CDS
GAGTCTTTGGTTGATGTGGC+AGG 0.479885 4.3:-67432976 MS.gene88286:CDS
AAGAAGCTATTTCAGGAAAA+GGG 0.484470 4.3:-67432157 MS.gene88286:CDS
GCACTCTATGAAAGTGCAAT+GGG 0.484567 4.3:-67433132 MS.gene88286:intron
ATCCATGTTCTCTGGATATG+TGG 0.500274 4.3:-67433192 MS.gene88286:CDS
TCTTTGGTTGATGTGGCAGG+TGG 0.504535 4.3:-67432973 MS.gene88286:CDS
TTTAGATCAACCACAGGTTG+TGG 0.518679 4.3:-67432893 MS.gene88286:CDS
CACAGCTGATTTGAGTGCCA+TGG 0.520024 4.3:+67433483 None:intergenic
TGCACTCTATGAAAGTGCAA+TGG 0.543647 4.3:-67433133 MS.gene88286:intron
CAACGGTGAAAGGCAAAGAA+GGG 0.548081 4.3:-67433312 MS.gene88286:CDS
TTTGGAGTCTTTGGTTGATG+TGG 0.555368 4.3:-67432980 MS.gene88286:CDS
TTGAGTAAAACAGCATCTGC+AGG 0.557051 4.3:+67432808 None:intergenic
TAAACTTAGTTTGTTTCAAG+GGG 0.566712 4.3:-67433067 MS.gene88286:CDS
TTGCGCTTGCTAACACGCGA+TGG 0.566747 4.3:-67433349 MS.gene88286:CDS
TACAAGATTACTCCAGTATG+TGG 0.572465 4.3:-67431963 MS.gene88286:CDS
CAAATGGATTTCAAGAGCAA+TGG 0.577950 4.3:-67433574 MS.gene88286:CDS
CCTTCAAAGCTTCTCATCAG+TGG 0.578749 4.3:-67433256 MS.gene88286:CDS
CTTTGGTTGATGTGGCAGGT+GGG 0.578821 4.3:-67432972 MS.gene88286:CDS
GTTGCAATTGCACTTTGACA+TGG 0.578956 4.3:-67432066 MS.gene88286:intron
TGCCACATATCCAGAGAACA+TGG 0.593078 4.3:+67433190 None:intergenic
CATTTGTGAATCAGCTGCCA+TGG 0.594995 4.3:+67433044 None:intergenic
GTCAAAGTGCAATTGCAACT+CGG 0.597693 4.3:+67432070 None:intergenic
TAGTTTGTTTCAAGGGGCCA+TGG 0.599443 4.3:-67433061 MS.gene88286:CDS
GATAAGTTAGCCACAACCTG+TGG 0.609880 4.3:+67432883 None:intergenic
GGACACTAACTTTAGAAGGG+TGG 0.621869 4.3:+67433383 None:intergenic
AGTAAAACAGCATCTGCAGG+AGG 0.624714 4.3:+67432811 None:intergenic
GTAGATGCAATCCACAAACA+TGG 0.627357 4.3:-67433448 MS.gene88286:CDS
AGGGTGGAGTTTCAAAGATG+AGG 0.627418 4.3:+67433399 None:intergenic
ATAGGACACTAACTTTAGAA+GGG 0.629455 4.3:+67433380 None:intergenic
CATGGCACTCAAATCAGCTG+TGG 0.632130 4.3:-67433482 MS.gene88286:CDS
ACTCCAAACCCTCAAACACA+TGG 0.632186 4.3:+67432995 None:intergenic
AACGGTGAAAGGCAAAGAAG+GGG 0.637209 4.3:-67433311 MS.gene88286:CDS
AAAACTGTGCATTTGATGTG+AGG 0.654544 4.3:+67432913 None:intergenic
TGAAGAATTCCCTTAACAAG+TGG 0.661082 4.3:+67433214 None:intergenic
CTGATGAGAAGCTTTGAAGG+AGG 0.668837 4.3:+67433259 None:intergenic
GTAAAACAGCATCTGCAGGA+GGG 0.681270 4.3:+67432812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATTATTTTAATTTAT+TGG - chr4.3:67433241-67433260 MS.gene88286:CDS 0.0%
!! TTTGTTAAGAAAGTTAAAAA+AGG + chr4.3:67432416-67432435 None:intergenic 15.0%
!! CATATATGGACAAAATAAAA+TGG + chr4.3:67432774-67432793 None:intergenic 20.0%
!! TATGAAATCATGAACATATA+TGG + chr4.3:67432788-67432807 None:intergenic 20.0%
!! TGTATACATGTTTGTATAAA+TGG + chr4.3:67432002-67432021 None:intergenic 20.0%
!!! ATAAACTTAGTTTGTTTCAA+GGG - chr4.3:67432449-67432468 MS.gene88286:intron 20.0%
!!! ATCAAGAAATTTTTACTTGT+GGG - chr4.3:67432820-67432839 MS.gene88286:CDS 20.0%
!!! TATCAAGAAATTTTTACTTG+TGG - chr4.3:67432819-67432838 MS.gene88286:CDS 20.0%
! AAGAAAGAGAAAAGAAAGAA+TGG - chr4.3:67433498-67433517 MS.gene88286:CDS 25.0%
! ACTCAAAATTTGAACTTTGT+TGG - chr4.3:67432661-67432680 MS.gene88286:intron 25.0%
! ATGTTCATGATTTCATAATC+AGG - chr4.3:67432791-67432810 MS.gene88286:intron 25.0%
!! TCAAGAAATTTTTACTTGTG+GGG - chr4.3:67432821-67432840 MS.gene88286:CDS 25.0%
!!! ATACAGTTTTATAAGTTCCA+TGG - chr4.3:67432017-67432036 MS.gene88286:intron 25.0%
!!! GATAAACTTAGTTTGTTTCA+AGG - chr4.3:67432448-67432467 MS.gene88286:intron 25.0%
!!! TAAACTTAGTTTGTTTCAAG+GGG - chr4.3:67432450-67432469 MS.gene88286:intron 25.0%
ATTTCAGGAAAAGGGAAAAA+AGG - chr4.3:67433368-67433387 MS.gene88286:CDS 30.0%
CAAAATTTGAACTTTGTTGG+TGG - chr4.3:67432664-67432683 MS.gene88286:intron 30.0%
CTAAAGTTAGTGTCCTATAT+AGG - chr4.3:67432142-67432161 MS.gene88286:CDS 30.0%
CTTAACTCAAAAAGTTACGA+CGG + chr4.3:67433170-67433189 None:intergenic 30.0%
TATAGGACACTAACTTTAGA+AGG + chr4.3:67432141-67432160 None:intergenic 30.0%
! AAAGAAGCTATTTCAGGAAA+AGG - chr4.3:67433359-67433378 MS.gene88286:CDS 30.0%
! AAGAAGCTATTTCAGGAAAA+GGG - chr4.3:67433360-67433379 MS.gene88286:CDS 30.0%
! ATAGGACACTAACTTTAGAA+GGG + chr4.3:67432140-67432159 None:intergenic 30.0%
AAAACTGTGCATTTGATGTG+AGG + chr4.3:67432607-67432626 None:intergenic 35.0%
AAGAAACTCATATATGACGC+AGG - chr4.3:67433521-67433540 MS.gene88286:CDS 35.0%
AATTCTTCATCCATGTTCTC+TGG - chr4.3:67432317-67432336 MS.gene88286:intron 35.0%
ATCTCAAATGTCTTTCGAAG+TGG - chr4.3:67433285-67433304 MS.gene88286:CDS 35.0%
GTAATGATGACTCTGCATAA+TGG - chr4.3:67433473-67433492 MS.gene88286:CDS 35.0%
TACAAGATTACTCCAGTATG+TGG - chr4.3:67433554-67433573 MS.gene88286:CDS 35.0%
TCTCAAATGTCTTTCGAAGT+GGG - chr4.3:67433286-67433305 MS.gene88286:CDS 35.0%
TGAAGAATTCCCTTAACAAG+TGG + chr4.3:67432306-67432325 None:intergenic 35.0%
TGGTTTCTTCGCAAAAACAA+CGG - chr4.3:67432188-67432207 MS.gene88286:CDS 35.0%
TTCAAAGATGAGGCTAATTC+AGG + chr4.3:67432111-67432130 None:intergenic 35.0%
! AACAGCAAAGAAGCTATTTC+AGG - chr4.3:67433353-67433372 MS.gene88286:CDS 35.0%
!! TGTTTTGCACCACTTGTTAA+GGG - chr4.3:67432294-67432313 MS.gene88286:intron 35.0%
!! TTGTTTTGCACCACTTGTTA+AGG - chr4.3:67432293-67432312 MS.gene88286:intron 35.0%
ATCCAGTCACATGTGATTGA+GGG + chr4.3:67433124-67433143 None:intergenic 40.0%
ATCCATGTTCTCTGGATATG+TGG - chr4.3:67432325-67432344 MS.gene88286:intron 40.0%
CTCAGAGAACCATTTCTTAG+AGG + chr4.3:67432355-67432374 None:intergenic 40.0%
GCTAATTCAGGAACAGTCAT+AGG + chr4.3:67432099-67432118 None:intergenic 40.0%
GTAGATGCAATCCACAAACA+TGG - chr4.3:67432069-67432088 MS.gene88286:CDS 40.0%
GTCAAAGTGCAATTGCAACT+CGG + chr4.3:67433450-67433469 None:intergenic 40.0%
GTTGCAATTGCACTTTGACA+TGG - chr4.3:67433451-67433470 MS.gene88286:CDS 40.0%
TCATAGGCTTTCCATGTTTG+TGG + chr4.3:67432083-67432102 None:intergenic 40.0%
TTCGCAAAAACAACGGTGAA+AGG - chr4.3:67432195-67432214 MS.gene88286:CDS 40.0%
TTGAGTAAAACAGCATCTGC+AGG + chr4.3:67432712-67432731 None:intergenic 40.0%
TTTAGATCAACCACAGGTTG+TGG - chr4.3:67432624-67432643 MS.gene88286:intron 40.0%
! AAGAAATGGTTCTCTGAGGA+AGG - chr4.3:67432357-67432376 MS.gene88286:intron 40.0%
! AATGTTCAAGCTTGCTCTCA+AGG - chr4.3:67432492-67432511 MS.gene88286:intron 40.0%
! ATTGAGGGCACATACATAGA+GGG + chr4.3:67433109-67433128 None:intergenic 40.0%
! CTCTAAGAAATGGTTCTCTG+AGG - chr4.3:67432353-67432372 MS.gene88286:intron 40.0%
! GCACTCTATGAAAGTGCAAT+GGG - chr4.3:67432385-67432404 MS.gene88286:intron 40.0%
! TGCACTCTATGAAAGTGCAA+TGG - chr4.3:67432384-67432403 MS.gene88286:intron 40.0%
! TTTGGAGTCTTTGGTTGATG+TGG - chr4.3:67432537-67432556 MS.gene88286:intron 40.0%
!! GAAGTGGGTTTTGCATGATT+GGG - chr4.3:67433301-67433320 MS.gene88286:CDS 40.0%
!!! CACAGTTTTAGATCAACCAC+AGG - chr4.3:67432618-67432637 MS.gene88286:intron 40.0%
!!! TGCAGATGCTGTTTTACTCA+AGG - chr4.3:67432711-67432730 MS.gene88286:intron 40.0%
AACGGTGAAAGGCAAAGAAG+GGG - chr4.3:67432206-67432225 MS.gene88286:CDS 45.0%
ACAACGGTGAAAGGCAAAGA+AGG - chr4.3:67432204-67432223 MS.gene88286:CDS 45.0%
ACTCCAAACCCTCAAACACA+TGG + chr4.3:67432525-67432544 None:intergenic 45.0%
AGAGACTTGAAGCCACATAC+TGG + chr4.3:67433569-67433588 None:intergenic 45.0%
AGGGTGGAGTTTCAAAGATG+AGG + chr4.3:67432121-67432140 None:intergenic 45.0%
AGTAAAACAGCATCTGCAGG+AGG + chr4.3:67432709-67432728 None:intergenic 45.0%
CAACGGTGAAAGGCAAAGAA+GGG - chr4.3:67432205-67432224 MS.gene88286:CDS 45.0%
CAGGTTGTGGCTAACTTATC+TGG - chr4.3:67432637-67432656 MS.gene88286:intron 45.0%
CATTTGTGAATCAGCTGCCA+TGG + chr4.3:67432476-67432495 None:intergenic 45.0%
CCTTCAAAGCTTCTCATCAG+TGG - chr4.3:67432261-67432280 MS.gene88286:intron 45.0%
CTCAAATCAGCTGTGGAACT+TGG - chr4.3:67432042-67432061 MS.gene88286:intron 45.0%
GATAAGTTAGCCACAACCTG+TGG + chr4.3:67432637-67432656 None:intergenic 45.0%
GATCCAGTCACATGTGATTG+AGG + chr4.3:67433125-67433144 None:intergenic 45.0%
GATTGCAGCCATGTGTTTGA+GGG - chr4.3:67432514-67432533 MS.gene88286:intron 45.0%
GCAAGCGCAAGAACCTATAT+AGG + chr4.3:67432158-67432177 None:intergenic 45.0%
GTAAAACAGCATCTGCAGGA+GGG + chr4.3:67432708-67432727 None:intergenic 45.0%
TGCCACATATCCAGAGAACA+TGG + chr4.3:67432330-67432349 None:intergenic 45.0%
! CCACTGATGAGAAGCTTTGA+AGG + chr4.3:67432264-67432283 None:intergenic 45.0%
! GATTGAGGGCACATACATAG+AGG + chr4.3:67433110-67433129 None:intergenic 45.0%
! GGACACTAACTTTAGAAGGG+TGG + chr4.3:67432137-67432156 None:intergenic 45.0%
! GTTTGAGGGTTTGGAGTCTT+TGG - chr4.3:67432528-67432547 MS.gene88286:intron 45.0%
! TGTGGCACTCCTCTAAGAAA+TGG - chr4.3:67432343-67432362 MS.gene88286:intron 45.0%
!! CGAAGTGGGTTTTGCATGAT+TGG - chr4.3:67433300-67433319 MS.gene88286:CDS 45.0%
!! CTGATGAGAAGCTTTGAAGG+AGG + chr4.3:67432261-67432280 None:intergenic 45.0%
!! TAGTTTGTTTCAAGGGGCCA+TGG - chr4.3:67432456-67432475 MS.gene88286:intron 45.0%
CAGCCATGTGTTTGAGGGTT+TGG - chr4.3:67432519-67432538 MS.gene88286:intron 50.0%
CATGGCACTCAAATCAGCTG+TGG - chr4.3:67432035-67432054 MS.gene88286:intron 50.0%
GGATTGCAGCCATGTGTTTG+AGG - chr4.3:67432513-67432532 MS.gene88286:intron 50.0%
TGCCCTCAATCACATGTGAC+TGG - chr4.3:67433119-67433138 MS.gene88286:CDS 50.0%
! CTTTGGTTGATGTGGCAGGT+GGG - chr4.3:67432545-67432564 MS.gene88286:intron 50.0%
! GAGTCTTTGGTTGATGTGGC+AGG - chr4.3:67432541-67432560 MS.gene88286:intron 50.0%
! TCTTTGGTTGATGTGGCAGG+TGG - chr4.3:67432544-67432563 MS.gene88286:intron 50.0%
!! CACAGCTGATTTGAGTGCCA+TGG + chr4.3:67432037-67432056 None:intergenic 50.0%
! TTGCGCTTGCTAACACGCGA+TGG - chr4.3:67432168-67432187 MS.gene88286:CDS 55.0%
GTTGATGTGGCAGGTGGGAC+TGG - chr4.3:67432550-67432569 MS.gene88286:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 67431946 67433593 67431946 ID=MS.gene88286
chr4.3 mRNA 67431946 67433593 67431946 ID=MS.gene88286.t1;Parent=MS.gene88286
chr4.3 exon 67433175 67433593 67433175 ID=MS.gene88286.t1.exon1;Parent=MS.gene88286.t1
chr4.3 CDS 67433175 67433593 67433175 ID=cds.MS.gene88286.t1;Parent=MS.gene88286.t1
chr4.3 exon 67432807 67433140 67432807 ID=MS.gene88286.t1.exon2;Parent=MS.gene88286.t1
chr4.3 CDS 67432807 67433140 67432807 ID=cds.MS.gene88286.t1;Parent=MS.gene88286.t1
chr4.3 exon 67432067 67432234 67432067 ID=MS.gene88286.t1.exon3;Parent=MS.gene88286.t1
chr4.3 CDS 67432067 67432234 67432067 ID=cds.MS.gene88286.t1;Parent=MS.gene88286.t1
chr4.3 exon 67431946 67431996 67431946 ID=MS.gene88286.t1.exon4;Parent=MS.gene88286.t1
chr4.3 CDS 67431946 67431996 67431946 ID=cds.MS.gene88286.t1;Parent=MS.gene88286.t1
Gene Sequence

>MS.gene88286

ATGGATTTCAAGAGCAATGGCAGTGAAGAAACTCAGCTGTATCATGCTCAAATCCATTTATACAAACATGTATACAGTTTTATAAGTTCCATGGCACTCAAATCAGCTGTGGAACTTGGCATAGTAGATGCAATCCACAAACATGGAAAGCCTATGACTGTTCCTGAATTAGCCTCATCTTTGAAACTCCACCCTTCTAAAGTTAGTGTCCTATATAGGTTCTTGCGCTTGCTAACACGCGATGGTTTCTTCGCAAAAACAACGGTGAAAGGCAAAGAAGGGGAAGAAGAAGAAACAGCTTATGCTCTCACTCCTCCTTCAAAGCTTCTCATCAGTGGTGAATCAACTTGTTTTGCACCACTTGTTAAGGGAATTCTTCATCCATGTTCTCTGGATATGTGGCACTCCTCTAAGAAATGGTTCTCTGAGGAAGGATCTTGCACTCTATGAAAGTGCAATGGGAGAGACCTTTTTTAACTTTCTTAACAAAGATTCTGAATCTGATAAACTTAGTTTGTTTCAAGGGGCCATGGCAGCTGATTCACAAATGTTCAAGCTTGCTCTCAAGGATTGCAGCCATGTGTTTGAGGGTTTGGAGTCTTTGGTTGATGTGGCAGGTGGGACTGGAGTTGTGTCAAAACTCATTCATGAAGAATTTCCTCACATCAAATGCACAGTTTTAGATCAACCACAGGTTGTGGCTAACTTATCTGGAACTCAAAATTTGAACTTTGTTGGTGGAGATATGTTCAAATCTATCCCTCCTGCAGATGCTGTTTTACTCAAGGTATGTTTATGTTTATCATTTTCTACTATTTGATCATTCCATTTTATTTTGTCCATATATGTTCATGATTTCATAATCAGGATCAGTATCAAGAAATTTTTACTTGTGGGGCAAGATTTTATATAATAAATATTTATACAAAATTTTTAGCAATGTGTAAGTAATAAATTAAAATCATTAGTTTTTTTTACTAAAAAATAATATCGTTATCATTGAGAAAAATACTTGAGATTTTAAACACTACACTATTATATTTAGAAAAATTAAAGAGTCATTAACATCTAAAAATTAAAATTGTTCTTTATATATGTGTCTTTTTATAATTAAAAAAGTATCATAGAATTTTGCTCATATTTAGCACTATCAAAAATATCCCTCTATGTATGTGCCCTCAATCACATGTGACTGGATCTGTGTCTGATTAAGATATAAATCCGTCGTAACTTTTTGAGTTAAGATCTTCTCTGTTTAATAAACATTTCAATTTTGAAAGAAATAAAATTGTAAAATAATATTATTTTAATTTATTGGTCAATTTAACATTGTACTAAAATCTCAAATGTCTTTCGAAGTGGGTTTTGCATGATTGGGATGATGAGCTCTCTTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCAGGAAAAGGGAAAAAAGGAAAGATAATAATCATAGACATATCAATTGATGAAGCAAGTGATGATCGTGAATTAACCGAGTTGCAATTGCACTTTGACATGGTAATGATGACTCTGCATAATGGAAAAGAAAGAGAAAAGAAAGAATGGAAGAAACTCATATATGACGCAGGCTTCAGCAACTACAAGATTACTCCAGTATGTGGCTTCAAGTCTCTCATAG
Protein sequence

>MS.gene88286.t1

MDFKSNGSEETQLYHAQIHLYKHVYSFISSMALKSAVELGIVDAIHKHGKPMTVPELASSLKLHPSKVSVLYRFLRLLTRDGFFAKTTVKGKEGEEEETAYALTPPSKLLISGESTCFAPLVKGILHPCSLDMWHSSKKCAMGETFFNFLNKDSESDKLSLFQGAMAADSQMFKLALKDCSHVFEGLESLVDVAGGTGVVSKLIHEEFPHIKCTVLDQPQVVANLSGTQNLNFVGGDMFKSIPPADAVLLKWVLHDWDDELSLKILKNSKEAISGKGKKGKIIIIDISIDEASDDRELTELQLHFDMASATTRLLQYVASSLS