Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88499.t1 | RHN40290.1 | 97.5 | 526 | 12 | 1 | 1 | 525 | 1 | 526 | 6.50E-289 | 1002.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88499.t1 | Q9SA38 | 45.9 | 516 | 268 | 4 | 1 | 509 | 1 | 512 | 1.7e-133 | 477.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88499.t1 | A0A396GH00 | 97.5 | 526 | 12 | 1 | 1 | 525 | 1 | 526 | 4.7e-289 | 1002.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056236 | MS.gene88499 | 0.902109 | 1.36E-78 | -1.69E-46 |
| MS.gene058075 | MS.gene88499 | 0.801679 | 8.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88499.t1 | MTR_8g039190 | 97.338 | 526 | 13 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1039 |
| MS.gene88499.t1 | MTR_8g039070 | 89.734 | 526 | 17 | 3 | 1 | 525 | 1 | 490 | 0.0 | 938 |
| MS.gene88499.t1 | MTR_5g080050 | 85.851 | 523 | 68 | 3 | 1 | 518 | 1 | 522 | 0.0 | 906 |
| MS.gene88499.t1 | MTR_5g082760 | 83.271 | 532 | 75 | 3 | 1 | 518 | 1 | 532 | 0.0 | 885 |
| MS.gene88499.t1 | MTR_4g030040 | 71.285 | 498 | 138 | 3 | 11 | 507 | 12 | 505 | 0.0 | 721 |
| MS.gene88499.t1 | MTR_4g030040 | 70.259 | 501 | 142 | 3 | 8 | 507 | 10 | 504 | 0.0 | 718 |
| MS.gene88499.t1 | MTR_4g030210 | 71.285 | 498 | 138 | 2 | 11 | 507 | 16 | 509 | 0.0 | 713 |
| MS.gene88499.t1 | MTR_8g447340 | 43.590 | 507 | 272 | 5 | 12 | 507 | 15 | 518 | 1.04e-158 | 462 |
| MS.gene88499.t1 | MTR_2g081930 | 31.518 | 514 | 327 | 10 | 9 | 504 | 17 | 523 | 8.75e-77 | 251 |
| MS.gene88499.t1 | MTR_4g120720 | 38.689 | 305 | 148 | 5 | 77 | 377 | 2 | 271 | 7.20e-65 | 212 |
| MS.gene88499.t1 | MTR_2g081950 | 30.102 | 392 | 245 | 7 | 128 | 499 | 18 | 400 | 2.56e-47 | 170 |
| MS.gene88499.t1 | MTR_4g081490 | 29.082 | 392 | 252 | 7 | 129 | 507 | 66 | 444 | 3.16e-46 | 168 |
| MS.gene88499.t1 | MTR_2g081960 | 32.031 | 128 | 83 | 2 | 7 | 133 | 16 | 140 | 1.13e-16 | 77.4 |
| MS.gene88499.t1 | MTR_4g081480 | 29.365 | 126 | 81 | 2 | 10 | 130 | 23 | 145 | 7.43e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88499.t1 | AT1G16390 | 45.930 | 516 | 268 | 4 | 1 | 509 | 1 | 512 | 5.32e-173 | 498 |
| MS.gene88499.t1 | AT1G79360 | 48.221 | 506 | 249 | 8 | 24 | 516 | 19 | 524 | 2.49e-172 | 497 |
| MS.gene88499.t1 | AT1G16370 | 44.158 | 505 | 268 | 9 | 16 | 513 | 21 | 518 | 1.37e-148 | 436 |
| MS.gene88499.t1 | AT1G79410 | 43.217 | 516 | 280 | 8 | 1 | 510 | 1 | 509 | 5.25e-146 | 429 |
| MS.gene88499.t1 | AT1G73220 | 38.327 | 514 | 289 | 9 | 11 | 507 | 27 | 529 | 4.33e-105 | 325 |
| MS.gene88499.t1 | AT3G20660 | 30.019 | 513 | 329 | 8 | 8 | 507 | 19 | 514 | 1.76e-73 | 243 |
| MS.gene88499.t1 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 9.85e-14 | 74.3 |
| MS.gene88499.t1 | AT3G51490 | 29.891 | 184 | 123 | 3 | 114 | 293 | 44 | 225 | 1.11e-13 | 74.3 |
| MS.gene88499.t1 | AT3G51490 | 29.714 | 175 | 117 | 3 | 123 | 293 | 3 | 175 | 2.31e-13 | 73.2 |
| MS.gene88499.t1 | AT1G20840 | 26.250 | 160 | 107 | 2 | 141 | 293 | 68 | 223 | 7.06e-12 | 68.6 |
| MS.gene88499.t1 | AT1G20840 | 26.250 | 160 | 107 | 2 | 141 | 293 | 68 | 223 | 7.06e-12 | 68.6 |
Find 70 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAATCTTCTTTCTTTAT+AGG | 0.092456 | 8.3:+58330922 | MS.gene88499:CDS |
| CCACTAGCTGTTGGAAATTT+AGG | 0.100486 | 8.3:+58331594 | MS.gene88499:CDS |
| TTCTTTATAGGTTGTCTTCT+TGG | 0.148431 | 8.3:+58330934 | MS.gene88499:CDS |
| TGAAATTCTTGACTGGTTTC+TGG | 0.161801 | 8.3:+58331088 | MS.gene88499:CDS |
| ATGATAGCTGTTATGATTCT+TGG | 0.200882 | 8.3:+58331540 | MS.gene88499:CDS |
| TTTAGGATTCAACATTTATT+TGG | 0.226455 | 8.3:+58331611 | MS.gene88499:CDS |
| ATTTCATCCCATGATAAAAT+TGG | 0.227150 | 8.3:-58330631 | None:intergenic |
| TTGTGTAGCAACATATTTCT+TGG | 0.258918 | 8.3:+58331668 | MS.gene88499:CDS |
| CCTCCCCGCCGATATCAAAA+AGG | 0.267652 | 8.3:-58331940 | None:intergenic |
| CAAAATGAACAATGTAAAAT+TGG | 0.272354 | 8.3:-58332012 | None:intergenic |
| TTGTGTGATGTGTGCTGTTT+TGG | 0.274294 | 8.3:+58331746 | MS.gene88499:CDS |
| GTAAACTCCCAAGATCTTCT+TGG | 0.282784 | 8.3:+58330821 | MS.gene88499:CDS |
| GAATTTGTGCAGTGCCATTT+TGG | 0.286472 | 8.3:-58330772 | None:intergenic |
| ACACTGATAATTATCCAAAA+TGG | 0.291848 | 8.3:+58330758 | MS.gene88499:CDS |
| ATTTACTCATATGGTGTGTT+TGG | 0.306270 | 8.3:+58331972 | MS.gene88499:CDS |
| TGCTCAATAGAATGAGATTC+AGG | 0.310523 | 8.3:-58330598 | None:intergenic |
| CGTGGAAATCTCTTTACATT+TGG | 0.314910 | 8.3:+58331259 | MS.gene88499:CDS |
| CCATTCAGCGCTAACTTTCT+CGG | 0.316763 | 8.3:-58331148 | None:intergenic |
| GCATTAGCTGATTCATCTAT+TGG | 0.326922 | 8.3:+58330973 | MS.gene88499:CDS |
| GCTGTTATGATTCTTGGAAT+TGG | 0.328512 | 8.3:+58331546 | MS.gene88499:CDS |
| TCCCAAGATCTTCTTGGTCT+TGG | 0.333286 | 8.3:+58330827 | MS.gene88499:CDS |
| TTTCAACTTTACTCATCAAT+AGG | 0.345221 | 8.3:+58331483 | MS.gene88499:CDS |
| GGACTTGGAATGGTTTATTT+CGG | 0.368666 | 8.3:+58331567 | MS.gene88499:CDS |
| CAAACACAATCATTTCTCAT+TGG | 0.381344 | 8.3:+58330863 | MS.gene88499:CDS |
| CCCAAGATCTTCTTGGTCTT+GGG | 0.388239 | 8.3:+58330828 | MS.gene88499:CDS |
| GAGAATTGTTTCATAAAAGA+TGG | 0.402166 | 8.3:+58331505 | MS.gene88499:CDS |
| GTGAGACAAGCTATTGTGTT+TGG | 0.405620 | 8.3:+58331903 | MS.gene88499:CDS |
| GAGATTTCCACGAAGAGTTT+CGG | 0.407414 | 8.3:-58331248 | None:intergenic |
| ATAGAAAACACAAGAATTGA+AGG | 0.420097 | 8.3:-58331708 | None:intergenic |
| TCCCAAGACCAAGAAGATCT+TGG | 0.437312 | 8.3:-58330829 | None:intergenic |
| GGTTTCTGGCGTTCATCCAT+CGG | 0.445814 | 8.3:+58331102 | MS.gene88499:CDS |
| CCGAGAAAGTTAGCGCTGAA+TGG | 0.463476 | 8.3:+58331148 | MS.gene88499:CDS |
| ATGATTCTTGGAATTGGACT+TGG | 0.469021 | 8.3:+58331552 | MS.gene88499:CDS |
| CCCAAGACCAAGAAGATCTT+GGG | 0.475977 | 8.3:-58330828 | None:intergenic |
| TTCGGTATGCCACTAGCTGT+TGG | 0.482710 | 8.3:+58331585 | MS.gene88499:CDS |
| GTTTCTGGCGTTCATCCATC+GGG | 0.485333 | 8.3:+58331103 | MS.gene88499:CDS |
| TAGAGTACCAGCTGCTAAAG+TGG | 0.490859 | 8.3:+58331773 | MS.gene88499:CDS |
| TGAGAAATGATTGTGTTTGA+AGG | 0.499350 | 8.3:-58330859 | None:intergenic |
| GAAACCAGTCAAGAATTTCA+TGG | 0.500112 | 8.3:-58331085 | None:intergenic |
| ATGGGGTACATGTCTTTACC+TGG | 0.502965 | 8.3:+58331210 | MS.gene88499:CDS |
| AGAACAATCCCTATAGTCTC+TGG | 0.504851 | 8.3:-58332035 | None:intergenic |
| ATATTAACCGAAACTCTTCG+TGG | 0.514113 | 8.3:+58331241 | MS.gene88499:CDS |
| GATTGTTCTTTGTGATACAA+TGG | 0.520244 | 8.3:+58332049 | MS.gene88499:CDS |
| GCTAAAGCCACTTTAGCAGC+TGG | 0.522596 | 8.3:-58331780 | None:intergenic |
| TCTTGGAATTGGACTTGGAA+TGG | 0.524447 | 8.3:+58331557 | MS.gene88499:CDS |
| AGAATTGTTTCATAAAAGAT+GGG | 0.525041 | 8.3:+58331506 | MS.gene88499:CDS |
| CCTAAATTTCCAACAGCTAG+TGG | 0.527532 | 8.3:-58331594 | None:intergenic |
| AAATATGTTGCTACACAAGA+AGG | 0.528534 | 8.3:-58331663 | None:intergenic |
| TCCGCCATGAAATTCTTGAC+TGG | 0.529656 | 8.3:+58331081 | MS.gene88499:CDS |
| TGCTAAAGTGGCTTTAGCAA+TGG | 0.540112 | 8.3:+58331785 | MS.gene88499:CDS |
| TGTTGAAAAGATTATGAGCA+TGG | 0.555849 | 8.3:-58331043 | None:intergenic |
| GCTGAATGGCGGTTTAGAGT+TGG | 0.556204 | 8.3:+58331162 | MS.gene88499:CDS |
| TGTGCTAGCACATTCATCAC+TGG | 0.561957 | 8.3:+58330895 | MS.gene88499:CDS |
| GAGAAATGATTGTGTTTGAA+GGG | 0.574527 | 8.3:-58330858 | None:intergenic |
| TCTTTGTTACCGAGTCGCCT+AGG | 0.584227 | 8.3:+58331322 | MS.gene88499:CDS |
| ATGACAGAGTAACATATAGC+AGG | 0.585106 | 8.3:-58331291 | None:intergenic |
| CGGTTAATATAAGCGAAACC+AGG | 0.588496 | 8.3:-58331228 | None:intergenic |
| AACAAGCCACCTAGGCGACT+CGG | 0.591181 | 8.3:-58331331 | None:intergenic |
| CCTAGGTGGCTTGTTATGCA+AGG | 0.598767 | 8.3:+58331339 | MS.gene88499:CDS |
| AGTTTACAAATATCAGAGGA+TGG | 0.609310 | 8.3:-58330805 | None:intergenic |
| AACAAGAACACATGTCCCGA+TGG | 0.611953 | 8.3:-58331118 | None:intergenic |
| TGGGAGTTTACAAATATCAG+AGG | 0.623076 | 8.3:-58330809 | None:intergenic |
| GAGGAACACAACAACGTCGT+TGG | 0.627045 | 8.3:+58331881 | MS.gene88499:CDS |
| CCTATAAAGAAAGAAGATTG+TGG | 0.630632 | 8.3:-58330922 | None:intergenic |
| GTTGTGTTCCTCACACATGT+CGG | 0.637523 | 8.3:-58331870 | None:intergenic |
| CCTTGCATAACAAGCCACCT+AGG | 0.639898 | 8.3:-58331339 | None:intergenic |
| AGTTGTTTCCGACATGTGTG+AGG | 0.640373 | 8.3:+58331862 | MS.gene88499:CDS |
| AGAAAGTTAGCGCTGAATGG+CGG | 0.664310 | 8.3:+58331151 | MS.gene88499:CDS |
| TTGTTACCGAGTCGCCTAGG+TGG | 0.668506 | 8.3:+58331325 | MS.gene88499:CDS |
| ACCAGTCAAGAATTTCATGG+CGG | 0.749781 | 8.3:-58331082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAATTTTATCAAATTT+TGG | + | chr8.3:58330658-58330677 | MS.gene88499:CDS | 10.0% |
| !! | AAAAACAATATTTACTCATA+TGG | + | chr8.3:58331963-58331982 | MS.gene88499:CDS | 15.0% |
| !!! | AAAAATGAAACTTTTTCTTT+TGG | - | chr8.3:58331465-58331484 | None:intergenic | 15.0% |
| !!! | AAAATGAAACTTTTTCTTTT+GGG | - | chr8.3:58331464-58331483 | None:intergenic | 15.0% |
| !! | AGAATTGTTTCATAAAAGAT+GGG | + | chr8.3:58331506-58331525 | MS.gene88499:CDS | 20.0% |
| !! | ATGAATCAACATGAAAAAAT+AGG | + | chr8.3:58332110-58332129 | MS.gene88499:CDS | 20.0% |
| !! | CAAAATGAACAATGTAAAAT+TGG | - | chr8.3:58332015-58332034 | None:intergenic | 20.0% |
| !!! | AAAAGAAACCAATTTTATCA+TGG | + | chr8.3:58330623-58330642 | MS.gene88499:CDS | 20.0% |
| !!! | AAAGAAACCAATTTTATCAT+GGG | + | chr8.3:58330624-58330643 | MS.gene88499:CDS | 20.0% |
| !!! | AAATGAAACTTTTTCTTTTG+GGG | - | chr8.3:58331463-58331482 | None:intergenic | 20.0% |
| !!! | AAATTTTATCAAATTTTGGG+TGG | + | chr8.3:58330662-58330681 | MS.gene88499:CDS | 20.0% |
| !!! | TAATCTTTTCAACAAATGTT+TGG | + | chr8.3:58331052-58331071 | MS.gene88499:CDS | 20.0% |
| !!! | TATTTTTTCATGTTGATTCA+TGG | - | chr8.3:58332111-58332130 | None:intergenic | 20.0% |
| !!! | TTTAGGATTCAACATTTATT+TGG | + | chr8.3:58331611-58331630 | MS.gene88499:CDS | 20.0% |
| ! | ACACTGATAATTATCCAAAA+TGG | + | chr8.3:58330758-58330777 | MS.gene88499:CDS | 25.0% |
| ! | ATAGAAAACACAAGAATTGA+AGG | - | chr8.3:58331711-58331730 | None:intergenic | 25.0% |
| ! | ATTTCATCCCATGATAAAAT+TGG | - | chr8.3:58330634-58330653 | None:intergenic | 25.0% |
| ! | GAGAATTGTTTCATAAAAGA+TGG | + | chr8.3:58331505-58331524 | MS.gene88499:CDS | 25.0% |
| ! | TTTCAACTTTACTCATCAAT+AGG | + | chr8.3:58331483-58331502 | MS.gene88499:CDS | 25.0% |
| !! | AGTATTTTACTTTCACAATG+GGG | + | chr8.3:58331193-58331212 | MS.gene88499:CDS | 25.0% |
| !! | ATTCTTGTGTTTTCTATCTT+AGG | + | chr8.3:58331714-58331733 | MS.gene88499:CDS | 25.0% |
| !! | GAGTATTTTACTTTCACAAT+GGG | + | chr8.3:58331192-58331211 | MS.gene88499:CDS | 25.0% |
| !! | TGAGTATTTTACTTTCACAA+TGG | + | chr8.3:58331191-58331210 | MS.gene88499:CDS | 25.0% |
| !!! | AATGAAACTTTTTCTTTTGG+GGG | - | chr8.3:58331462-58331481 | None:intergenic | 25.0% |
| AAATATGTTGCTACACAAGA+AGG | - | chr8.3:58331666-58331685 | None:intergenic | 30.0% | |
| AGTTTACAAATATCAGAGGA+TGG | - | chr8.3:58330808-58330827 | None:intergenic | 30.0% | |
| ATGATAGCTGTTATGATTCT+TGG | + | chr8.3:58331540-58331559 | MS.gene88499:CDS | 30.0% | |
| ATTTACTCATATGGTGTGTT+TGG | + | chr8.3:58331972-58331991 | MS.gene88499:CDS | 30.0% | |
| CAAACACAATCATTTCTCAT+TGG | + | chr8.3:58330863-58330882 | MS.gene88499:CDS | 30.0% | |
| CCACAATCTTCTTTCTTTAT+AGG | + | chr8.3:58330922-58330941 | MS.gene88499:CDS | 30.0% | |
| CCTATAAAGAAAGAAGATTG+TGG | - | chr8.3:58330925-58330944 | None:intergenic | 30.0% | |
| GAGAAATGATTGTGTTTGAA+GGG | - | chr8.3:58330861-58330880 | None:intergenic | 30.0% | |
| GATTGTTCTTTGTGATACAA+TGG | + | chr8.3:58332049-58332068 | MS.gene88499:CDS | 30.0% | |
| TGAGAAATGATTGTGTTTGA+AGG | - | chr8.3:58330862-58330881 | None:intergenic | 30.0% | |
| TGTTGAAAAGATTATGAGCA+TGG | - | chr8.3:58331046-58331065 | None:intergenic | 30.0% | |
| TTCTTTATAGGTTGTCTTCT+TGG | + | chr8.3:58330934-58330953 | MS.gene88499:CDS | 30.0% | |
| TTGTGTAGCAACATATTTCT+TGG | + | chr8.3:58331668-58331687 | MS.gene88499:CDS | 30.0% | |
| ! | ATTCTGTCCCTTTTTGATAT+CGG | + | chr8.3:58331932-58331951 | MS.gene88499:CDS | 30.0% |
| ! | TTAGCAATGGTTGCATTTTT+CGG | + | chr8.3:58331798-58331817 | MS.gene88499:CDS | 30.0% |
| !! | TTTATCAAATTTTGGGTGGA+TGG | + | chr8.3:58330666-58330685 | MS.gene88499:CDS | 30.0% |
| !!! | AGTAGTTTTTAGTGCTTCAA+TGG | + | chr8.3:58331635-58331654 | MS.gene88499:CDS | 30.0% |
| ATATTAACCGAAACTCTTCG+TGG | + | chr8.3:58331241-58331260 | MS.gene88499:CDS | 35.0% | |
| ATGACAGAGTAACATATAGC+AGG | - | chr8.3:58331294-58331313 | None:intergenic | 35.0% | |
| ATGATTCTTGGAATTGGACT+TGG | + | chr8.3:58331552-58331571 | MS.gene88499:CDS | 35.0% | |
| CGTGGAAATCTCTTTACATT+TGG | + | chr8.3:58331259-58331278 | MS.gene88499:CDS | 35.0% | |
| GAAACCAGTCAAGAATTTCA+TGG | - | chr8.3:58331088-58331107 | None:intergenic | 35.0% | |
| GCTGTTATGATTCTTGGAAT+TGG | + | chr8.3:58331546-58331565 | MS.gene88499:CDS | 35.0% | |
| GGACTTGGAATGGTTTATTT+CGG | + | chr8.3:58331567-58331586 | MS.gene88499:CDS | 35.0% | |
| TGCTCAATAGAATGAGATTC+AGG | - | chr8.3:58330601-58330620 | None:intergenic | 35.0% | |
| TGGGAGTTTACAAATATCAG+AGG | - | chr8.3:58330812-58330831 | None:intergenic | 35.0% | |
| ! | CTTGTGTTTTCTATCTTAGG+TGG | + | chr8.3:58331717-58331736 | MS.gene88499:CDS | 35.0% |
| ! | GCATTAGCTGATTCATCTAT+TGG | + | chr8.3:58330973-58330992 | MS.gene88499:CDS | 35.0% |
| ! | TCATTTTGCCAGAGACTATA+GGG | + | chr8.3:58332027-58332046 | MS.gene88499:CDS | 35.0% |
| ! | TTCATTTTGCCAGAGACTAT+AGG | + | chr8.3:58332026-58332045 | MS.gene88499:CDS | 35.0% |
| !! | TGAAATTCTTGACTGGTTTC+TGG | + | chr8.3:58331088-58331107 | MS.gene88499:CDS | 35.0% |
| ACCAGTCAAGAATTTCATGG+CGG | - | chr8.3:58331085-58331104 | None:intergenic | 40.0% | |
| AGAACAATCCCTATAGTCTC+TGG | - | chr8.3:58332038-58332057 | None:intergenic | 40.0% | |
| CCACTAGCTGTTGGAAATTT+AGG | + | chr8.3:58331594-58331613 | MS.gene88499:CDS | 40.0% | |
| CCTAAATTTCCAACAGCTAG+TGG | - | chr8.3:58331597-58331616 | None:intergenic | 40.0% | |
| CGGTTAATATAAGCGAAACC+AGG | - | chr8.3:58331231-58331250 | None:intergenic | 40.0% | |
| GAGATTTCCACGAAGAGTTT+CGG | - | chr8.3:58331251-58331270 | None:intergenic | 40.0% | |
| GTAAACTCCCAAGATCTTCT+TGG | + | chr8.3:58330821-58330840 | MS.gene88499:CDS | 40.0% | |
| GTGAGACAAGCTATTGTGTT+TGG | + | chr8.3:58331903-58331922 | MS.gene88499:CDS | 40.0% | |
| TCTTGGAATTGGACTTGGAA+TGG | + | chr8.3:58331557-58331576 | MS.gene88499:CDS | 40.0% | |
| !! | TGCTAAAGTGGCTTTAGCAA+TGG | + | chr8.3:58331785-58331804 | MS.gene88499:CDS | 40.0% |
| !! | TTTTCTTTTGGGGGCAGTTT+TGG | - | chr8.3:58331453-58331472 | None:intergenic | 40.0% |
| !!! | GAATTTGTGCAGTGCCATTT+TGG | - | chr8.3:58330775-58330794 | None:intergenic | 40.0% |
| !!! | TTGTGTGATGTGTGCTGTTT+TGG | + | chr8.3:58331746-58331765 | MS.gene88499:CDS | 40.0% |
| AACAAGAACACATGTCCCGA+TGG | - | chr8.3:58331121-58331140 | None:intergenic | 45.0% | |
| ATGGGGTACATGTCTTTACC+TGG | + | chr8.3:58331210-58331229 | MS.gene88499:CDS | 45.0% | |
| CCATTCAGCGCTAACTTTCT+CGG | - | chr8.3:58331151-58331170 | None:intergenic | 45.0% | |
| CCCAAGACCAAGAAGATCTT+GGG | - | chr8.3:58330831-58330850 | None:intergenic | 45.0% | |
| GTTGTGTTCCTCACACATGT+CGG | - | chr8.3:58331873-58331892 | None:intergenic | 45.0% | |
| TCCCAAGACCAAGAAGATCT+TGG | - | chr8.3:58330832-58330851 | None:intergenic | 45.0% | |
| TCCCAAGATCTTCTTGGTCT+TGG | + | chr8.3:58330827-58330846 | MS.gene88499:CDS | 45.0% | |
| TCCGCCATGAAATTCTTGAC+TGG | + | chr8.3:58331081-58331100 | MS.gene88499:CDS | 45.0% | |
| TGTGCTAGCACATTCATCAC+TGG | + | chr8.3:58330895-58330914 | MS.gene88499:CDS | 45.0% | |
| ! | AGAAAGTTAGCGCTGAATGG+CGG | + | chr8.3:58331151-58331170 | MS.gene88499:CDS | 45.0% |
| ! | AGTTGTTTCCGACATGTGTG+AGG | + | chr8.3:58331862-58331881 | MS.gene88499:CDS | 45.0% |
| ! | CCCAAGATCTTCTTGGTCTT+GGG | + | chr8.3:58330828-58330847 | MS.gene88499:CDS | 45.0% |
| ! | CTGTCCCTTTTTGATATCGG+CGG | + | chr8.3:58331935-58331954 | MS.gene88499:CDS | 45.0% |
| ! | TAGAGTACCAGCTGCTAAAG+TGG | + | chr8.3:58331773-58331792 | MS.gene88499:CDS | 45.0% |
| ! | TGTCCCTTTTTGATATCGGC+GGG | + | chr8.3:58331936-58331955 | MS.gene88499:CDS | 45.0% |
| !! | TGCATTTTTCGGCGCTTGTA+CGG | + | chr8.3:58331809-58331828 | MS.gene88499:CDS | 45.0% |
| !!! | AAAAAATTTTATCAAATTTT+GGG | + | chr8.3:58330659-58330678 | MS.gene88499:CDS | 5.0% |
| CCTTGCATAACAAGCCACCT+AGG | - | chr8.3:58331342-58331361 | None:intergenic | 50.0% | |
| CTCCCCGCCGATATCAAAAA+GGG | - | chr8.3:58331942-58331961 | None:intergenic | 50.0% | |
| GAGGAACACAACAACGTCGT+TGG | + | chr8.3:58331881-58331900 | MS.gene88499:CDS | 50.0% | |
| TCTTTGTTACCGAGTCGCCT+AGG | + | chr8.3:58331322-58331341 | MS.gene88499:CDS | 50.0% | |
| TTCGGTATGCCACTAGCTGT+TGG | + | chr8.3:58331585-58331604 | MS.gene88499:CDS | 50.0% | |
| ! | CCGAGAAAGTTAGCGCTGAA+TGG | + | chr8.3:58331148-58331167 | MS.gene88499:CDS | 50.0% |
| ! | GCTAAAGCCACTTTAGCAGC+TGG | - | chr8.3:58331783-58331802 | None:intergenic | 50.0% |
| ! | GCTGAATGGCGGTTTAGAGT+TGG | + | chr8.3:58331162-58331181 | MS.gene88499:CDS | 50.0% |
| ! | GTCCCTTTTTGATATCGGCG+GGG | + | chr8.3:58331937-58331956 | MS.gene88499:CDS | 50.0% |
| !! | CCTAGGTGGCTTGTTATGCA+AGG | + | chr8.3:58331339-58331358 | MS.gene88499:CDS | 50.0% |
| !! | GGTTTCTGGCGTTCATCCAT+CGG | + | chr8.3:58331102-58331121 | MS.gene88499:CDS | 50.0% |
| !! | GTTTCTGGCGTTCATCCATC+GGG | + | chr8.3:58331103-58331122 | MS.gene88499:CDS | 50.0% |
| AACAAGCCACCTAGGCGACT+CGG | - | chr8.3:58331334-58331353 | None:intergenic | 55.0% | |
| CCTCCCCGCCGATATCAAAA+AGG | - | chr8.3:58331943-58331962 | None:intergenic | 55.0% | |
| TTGTTACCGAGTCGCCTAGG+TGG | + | chr8.3:58331325-58331344 | MS.gene88499:CDS | 55.0% | |
| ! | CCTTTTTGATATCGGCGGGG+AGG | + | chr8.3:58331940-58331959 | MS.gene88499:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58330571 | 58332148 | 58330571 | ID=MS.gene88499 |
| chr8.3 | mRNA | 58330571 | 58332148 | 58330571 | ID=MS.gene88499.t1;Parent=MS.gene88499 |
| chr8.3 | exon | 58330571 | 58332148 | 58330571 | ID=MS.gene88499.t1.exon1;Parent=MS.gene88499.t1 |
| chr8.3 | CDS | 58330571 | 58332148 | 58330571 | ID=cds.MS.gene88499.t1;Parent=MS.gene88499.t1 |
| Gene Sequence |
| Protein sequence |
