AlfalfaGEDB | MS.gene88622

M. sativa cultivar XinJiangDaYe / MS.gene88622

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88622.t1	XP_013442014.1	94.6	428	18	2	1	423	1	428	1.50E-232	815.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88622.t1	I3SJ53	94.6	428	18	2	1	423	1	428	1.1e-232	815.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052426	MS.gene88622	0.803981	2.69E-49	-1.69E-46
MS.gene055701	MS.gene88622	0.812711	3.69E-51	-1.69E-46
MS.gene059710	MS.gene88622	0.822412	2.40E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88622.t1	MTR_0365s0010	94.952	416	18	1	11	423	13	428	0.0	806
MS.gene88622.t1	MTR_0400s0020	94.595	222	9	1	205	423	1	222	3.64e-151	427

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88622.t1	AT3G19990	67.749	431	125	5	1	423	1	425	0.0	595
MS.gene88622.t1	AT3G19990	68.310	426	124	4	6	423	28	450	0.0	594

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Find 102 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAATTGTCTTTGA+GGG	0.436171	1.4:-24017392	MS.gene88622:CDS
AAACCCGGCTTACCATTTCC+AGG	0.460541	1.4:+24017112	None:intergenic
AAAGATAGCAAGGTTAACAT+AGG	0.542518	1.4:+24017567	None:intergenic
AAAGGGTTTCTTGGGAAGGT+TGG	0.357316	1.4:-24016679	MS.gene88622:CDS
AAAGTGAAGCATATTCGTAC+AGG	0.535644	1.4:-24017289	MS.gene88622:CDS
AAATATCAACAAGGTGTTCA+AGG	0.492223	1.4:+24017665	None:intergenic
AAGCTATGATTTGTGAAGAA+GGG	0.584819	1.4:-24016874	MS.gene88622:CDS
AATCTTGGCCAAATACTTCA+TGG	0.437070	1.4:-24016616	MS.gene88622:CDS
ACAACTTCACGAGAGGTTGA+AGG	0.570776	1.4:+24017541	None:intergenic
ACATATGGCTCTCCCACAAA+AGG	0.450256	1.4:+24016806	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAGCAAGGTTAACAT+AGG	+	chr1.4:24016857-24016876	None:intergenic	30.0%
AGTTGCAAGAGATTTGTATT+GGG	-	chr1.4:24017524-24017543	MS.gene88622:CDS	30.0%
GAGTCAAGTTTATTTGACAA+AGG	-	chr1.4:24017644-24017663	MS.gene88622:CDS	30.0%
TAGTTGCAAGAGATTTGTAT+TGG	-	chr1.4:24017523-24017542	MS.gene88622:CDS	30.0%
TCATGAATAAGAGATTGTCT+AGG	+	chr1.4:24016961-24016980	None:intergenic	30.0%
TTAATAAGGATGAAAGTTGG+AGG	-	chr1.4:24017073-24017092	MS.gene88622:CDS	30.0%
AAAGTGAAGCATATTCGTAC+AGG	-	chr1.4:24017132-24017151	MS.gene88622:CDS	35.0%
AATCTTGGCCAAATACTTCA+TGG	-	chr1.4:24017805-24017824	MS.gene88622:CDS	35.0%
AGCAAGGTTAACATAGGAAT+TGG	+	chr1.4:24016851-24016870	None:intergenic	35.0%
AGTATGGAGATTTCCAAAGA+TGG	+	chr1.4:24016792-24016811	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	24016586	24017857	24016586	ID=MS.gene88622
chr1.4	mRNA	24016586	24017857	24016586	ID=MS.gene88622.t1;Parent=MS.gene88622
chr1.4	exon	24016586	24017857	24016586	ID=MS.gene88622.t1.exon1;Parent=MS.gene88622.t1
chr1.4	CDS	24016586	24017857	24016586	ID=cds.MS.gene88622.t1;Parent=MS.gene88622.t1

Gene Sequence

>MS.gene88622

ATGTCGAATTCTTCTTCATCAAGTTCAAGTGAATACCTCCAAACCCTCTTAACGTCAGCTAAACCCTTCCTCCGAAACGAACTCAGTTCCATCGACACCAAACTCCCTTCCCTAATCACTATCCTCCGTTCCGTTGGTGCATCCGAATGTTGGCACAAACATGGCACTTTCCTTGAACACCTTGTTGATATTTTCCGCATTCTCCATCTTTGGAAATCTCCATACTCCGTGTCTCTTTGTGGCCTATTCCACTCAGCATACTCCAATTCCTATGTTAACCTTGCTATCTTTGATCCTTCAACCTCTCGTGAAGTTGTTCGTGGACATGTTGGTGTAGAAGCTGAACGTTTGATTCATTTGTTTTGTATTGTTCCTAGACAATCTCTTATTCATGATGATCTTCTTTTTCACTACTCTGATAAGGAGCTTTTTCATGATCTTGAAAAATCAGAATTGTCTTTGAGGGATGCAAAGGAGAAGGGGATATTTAATAAGGATGAAAGTTGGAGGAAGAAATTGCAAGGTCTTGTTCCAGTTGATGGCATAAAAGTGAAGCATATTCGTACAGGTGAAGACGTGAAGCTTTCGAGGAGAATTGTCGCTGTTTTTGTTATGATGACTATGGCTGATTTTTGTGATCAGCTTTTTGGTTTTCAAGATATGTTGTTTGAGAACTTTGATGGTAGGCTTGAGTTTAAAGGGAACAATTTTGGTGCTGTTTGGCCTGGAAATGGTAAGCCGGGTTTGTGGTTGAATTCGATTTCACGGATGGGAGCTGTTTATAATTTGATTCTGAGAGAGGAAGAGATATTCTTGGAAGAAAAGAATAAAGTAAAAAGAGTTAATGGTGTTAATAGTGAGAGAGATGAAGATATTGAGTTGGTTTTGCCACCGGTTTTCGCTAAATGTACCAAGGTTTTGGATGCAGGGGATCAAATAGTTGCAAGAGATTTGTATTGGGAAGCTATGATTTGTGAAGAAGGGTTGGAGAAGATTGAGGAGTTGTTGGTGAAGAGTATTGAGAAAAACCCTTTTGTGGGAGAGCCATATGTGGCGTTGAGTCAAGTTTATTTGACAAAGGGTAGATTTGAAGAGGCTGAGAAAGAAGCTGAGAGAGGATTGACTCTTTTGCTTGAATGGGGATGTCATTGGGATAAAAGGGTTTCTTGGGAAGGTTGGATTGCATGGACTAGAGTTTTGTTAATGAAGGCAAAAGAGAAATCTTGGCCAAATACTTCATGGGGAATCCTCAATTTGGGTCTTGTAAAATAA

Protein sequence

>MS.gene88622.t1

MSNSSSSSSSEYLQTLLTSAKPFLRNELSSIDTKLPSLITILRSVGASECWHKHGTFLEHLVDIFRILHLWKSPYSVSLCGLFHSAYSNSYVNLAIFDPSTSREVVRGHVGVEAERLIHLFCIVPRQSLIHDDLLFHYSDKELFHDLEKSELSLRDAKEKGIFNKDESWRKKLQGLVPVDGIKVKHIRTGEDVKLSRRIVAVFVMMTMADFCDQLFGFQDMLFENFDGRLEFKGNNFGAVWPGNGKPGLWLNSISRMGAVYNLILREEEIFLEEKNKVKRVNGVNSERDEDIELVLPPVFAKCTKVLDAGDQIVARDLYWEAMICEEGLEKIEELLVKSIEKNPFVGEPYVALSQVYLTKGRFEEAEKEAERGLTLLLEWGCHWDKRVSWEGWIAWTRVLLMKAKEKSWPNTSWGILNLGLVK