AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88622

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88622.t1 MTR_0365s0010 94.952 416 18 1 11 423 13 428 0.0 806
MS.gene88622.t1 MTR_0400s0020 94.595 222 9 1 205 423 1 222 3.64e-151 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88622.t1 AT3G19990 67.749 431 125 5 1 423 1 425 0.0 595
MS.gene88622.t1 AT3G19990 68.310 426 124 4 6 423 28 450 0.0 594

Find 102 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGATGTCATTGGGATAAA+AGG 0.193236 1.4:-24016697 MS.gene88622:CDS
TTCATGGGGAATCCTCAATT+TGG 0.202185 1.4:-24016600 MS.gene88622:CDS
AGGATTCCCCATGAAGTATT+TGG 0.216030 1.4:+24016608 None:intergenic
CGCTAAATGTACCAAGGTTT+TGG 0.218781 1.4:-24016936 MS.gene88622:CDS
GATGGTAGGCTTGAGTTTAA+AGG 0.248142 1.4:-24017157 MS.gene88622:CDS
GAGTTTAAAGGGAACAATTT+TGG 0.290547 1.4:-24017145 MS.gene88622:CDS
CAAGGTCTTGTTCCAGTTGA+TGG 0.297823 1.4:-24017316 MS.gene88622:CDS
AGTGATTAGGGAAGGGAGTT+TGG 0.305646 1.4:+24017738 None:intergenic
GGAGAAGGGGATATTTAATA+AGG 0.337948 1.4:-24017362 MS.gene88622:CDS
ATTGGGATAAAAGGGTTTCT+TGG 0.340896 1.4:-24016688 MS.gene88622:CDS
GAGAGAGGAAGAGATATTCT+TGG 0.347724 1.4:-24017041 MS.gene88622:CDS
AAAGGGTTTCTTGGGAAGGT+TGG 0.357316 1.4:-24016679 MS.gene88622:CDS
CGGAACGGAGGATAGTGATT+AGG 0.362841 1.4:+24017725 None:intergenic
ATGGTAGGCTTGAGTTTAAA+GGG 0.367339 1.4:-24017156 MS.gene88622:CDS
AGCAAGGTTAACATAGGAAT+TGG 0.373886 1.4:+24017573 None:intergenic
CCATACTCCGTGTCTCTTTG+TGG 0.392811 1.4:-24017616 MS.gene88622:CDS
TGGAGTATGCTGAGTGGAAT+AGG 0.394596 1.4:+24017593 None:intergenic
TAGCTGACGTTAAGAGGGTT+TGG 0.405604 1.4:+24017797 None:intergenic
CTTGGGAAGGTTGGATTGCA+TGG 0.408127 1.4:-24016670 MS.gene88622:CDS
CCACAAAGAGACACGGAGTA+TGG 0.409510 1.4:+24017616 None:intergenic
TTGGGATAAAAGGGTTTCTT+GGG 0.409530 1.4:-24016687 MS.gene88622:CDS
TCATGGGGAATCCTCAATTT+GGG 0.409791 1.4:-24016599 MS.gene88622:CDS
TGAAGGCAAAAGAGAAATCT+TGG 0.410876 1.4:-24016631 MS.gene88622:CDS
GGAACGGAGGATAGTGATTA+GGG 0.414317 1.4:+24017726 None:intergenic
TGCTTGAATGGGGATGTCAT+TGG 0.423224 1.4:-24016706 MS.gene88622:CDS
ACTTGACTCAACGCCACATA+TGG 0.436003 1.4:+24016791 None:intergenic
AAAATCAGAATTGTCTTTGA+GGG 0.436171 1.4:-24017392 MS.gene88622:CDS
AATCTTGGCCAAATACTTCA+TGG 0.437070 1.4:-24016616 MS.gene88622:CDS
AGTTGCAAGAGATTTGTATT+GGG 0.443766 1.4:-24016897 MS.gene88622:CDS
ACATATGGCTCTCCCACAAA+AGG 0.450256 1.4:+24016806 None:intergenic
GGTGCTGTTTGGCCTGGAAA+TGG 0.450409 1.4:-24017124 MS.gene88622:CDS
CGATGGAACTGAGTTCGTTT+CGG 0.450841 1.4:+24017764 None:intergenic
TAGTTGCAAGAGATTTGTAT+TGG 0.453285 1.4:-24016898 MS.gene88622:CDS
TATTTAATAAGGATGAAAGT+TGG 0.455200 1.4:-24017351 MS.gene88622:CDS
GGAGAAGATTGAGGAGTTGT+TGG 0.455932 1.4:-24016849 MS.gene88622:CDS
ACCTCTCGTGAAGTTGTTCG+TGG 0.457601 1.4:-24017535 MS.gene88622:CDS
GCTTGAATGGGGATGTCATT+GGG 0.459953 1.4:-24016705 MS.gene88622:CDS
AAACCCGGCTTACCATTTCC+AGG 0.460541 1.4:+24017112 None:intergenic
GGGATGTCATTGGGATAAAA+GGG 0.463467 1.4:-24016696 MS.gene88622:CDS
ATGTTGTTTGAGAACTTTGA+TGG 0.465122 1.4:-24017175 MS.gene88622:CDS
GAGAGATGAAGATATTGAGT+TGG 0.467332 1.4:-24016975 MS.gene88622:CDS
AGGGTTTAGCTGACGTTAAG+AGG 0.469193 1.4:+24017791 None:intergenic
TTGGTACATTTAGCGAAAAC+CGG 0.470769 1.4:+24016944 None:intergenic
CCGTTGGTGCATCCGAATGT+TGG 0.471677 1.4:-24017705 MS.gene88622:CDS
TGTGGTTGAATTCGATTTCA+CGG 0.477866 1.4:-24017090 MS.gene88622:CDS
GGAAGGGAGTTTGGTGTCGA+TGG 0.488941 1.4:+24017747 None:intergenic
AAATATCAACAAGGTGTTCA+AGG 0.492223 1.4:+24017665 None:intergenic
ACTGAGTTCGTTTCGGAGGA+AGG 0.494057 1.4:+24017771 None:intergenic
AGAAGGGTTGGAGAAGATTG+AGG 0.501081 1.4:-24016858 MS.gene88622:CDS
GTGAAGACGTGAAGCTTTCG+AGG 0.504729 1.4:-24017267 MS.gene88622:CDS
CTGAGTTCGTTTCGGAGGAA+GGG 0.507032 1.4:+24017772 None:intergenic
AGTCAAGTTTATTTGACAAA+GGG 0.507942 1.4:-24016776 MS.gene88622:CDS
GCCATGTTTGTGCCAACATT+CGG 0.508059 1.4:+24017693 None:intergenic
GTTGAATTCGATTTCACGGA+TGG 0.515604 1.4:-24017086 MS.gene88622:CDS
CGGAGGATAGTGATTAGGGA+AGG 0.517047 1.4:+24017730 None:intergenic
TGGCCTGGAAATGGTAAGCC+GGG 0.526760 1.4:-24017115 MS.gene88622:CDS
GAAGCTATGATTTGTGAAGA+AGG 0.528989 1.4:-24016875 MS.gene88622:CDS
ATCTTGGCCAAATACTTCAT+GGG 0.532651 1.4:-24016615 MS.gene88622:CDS
CTGACGTTAAGAGGGTTTGG+AGG 0.534638 1.4:+24017800 None:intergenic
AAAGTGAAGCATATTCGTAC+AGG 0.535644 1.4:-24017289 MS.gene88622:CDS
ATCACTATCCTCCGTTCCGT+TGG 0.535749 1.4:-24017721 MS.gene88622:CDS
TATGATTTGTGAAGAAGGGT+TGG 0.536677 1.4:-24016870 MS.gene88622:CDS
AAAGATAGCAAGGTTAACAT+AGG 0.542518 1.4:+24017567 None:intergenic
TTGGCCTGGAAATGGTAAGC+CGG 0.547055 1.4:-24017116 MS.gene88622:CDS
TTAATAAGGATGAAAGTTGG+AGG 0.548735 1.4:-24017348 MS.gene88622:CDS
TTGAGGGATGCAAAGGAGAA+GGG 0.550379 1.4:-24017376 MS.gene88622:CDS
ATCCCCTGCATCCAAAACCT+TGG 0.551710 1.4:+24016925 None:intergenic
GACAAAGGGTAGATTTGAAG+AGG 0.553281 1.4:-24016762 MS.gene88622:CDS
GAGTCAAGTTTATTTGACAA+AGG 0.555570 1.4:-24016777 MS.gene88622:CDS
TTTGAGGGATGCAAAGGAGA+AGG 0.562814 1.4:-24017377 MS.gene88622:CDS
CCAACATTCGGATGCACCAA+CGG 0.564997 1.4:+24017705 None:intergenic
ATCGAATTCAACCACAAACC+CGG 0.565553 1.4:+24017097 None:intergenic
GGAGGATAGTGATTAGGGAA+GGG 0.569144 1.4:+24017731 None:intergenic
ACAACTTCACGAGAGGTTGA+AGG 0.570776 1.4:+24017541 None:intergenic
CATATGGCTCTCCCACAAAA+GGG 0.575285 1.4:+24016807 None:intergenic
TGTTTGAGAACTTTGATGGT+AGG 0.580594 1.4:-24017171 MS.gene88622:CDS
TTATAATTTGATTCTGAGAG+AGG 0.581262 1.4:-24017056 MS.gene88622:CDS
ATTGTCTTTGAGGGATGCAA+AGG 0.581268 1.4:-24017383 MS.gene88622:CDS
GGGTTTAGCTGACGTTAAGA+GGG 0.582726 1.4:+24017792 None:intergenic
TCCGAATGTTGGCACAAACA+TGG 0.584556 1.4:-24017694 MS.gene88622:CDS
AAGCTATGATTTGTGAAGAA+GGG 0.584819 1.4:-24016874 MS.gene88622:CDS
AGTATGGAGATTTCCAAAGA+TGG 0.588474 1.4:+24017632 None:intergenic
TTGAATTCGATTTCACGGAT+GGG 0.589542 1.4:-24017085 MS.gene88622:CDS
GATAAAAGGGTTTCTTGGGA+AGG 0.592453 1.4:-24016683 MS.gene88622:CDS
GAAATGGTAAGCCGGGTTTG+TGG 0.595506 1.4:-24017108 MS.gene88622:CDS
TTGAAGGATCAAAGATAGCA+AGG 0.597008 1.4:+24017557 None:intergenic
GAAGTTGTTCGTGGACATGT+TGG 0.608364 1.4:-24017526 MS.gene88622:CDS
TCTTGGCCAAATACTTCATG+GGG 0.613444 1.4:-24016614 MS.gene88622:CDS
TGGAACTGAGTTCGTTTCGG+AGG 0.616898 1.4:+24017767 None:intergenic
TGAGGGATGCAAAGGAGAAG+GGG 0.618392 1.4:-24017375 MS.gene88622:CDS
CGGATGCACCAACGGAACGG+AGG 0.622375 1.4:+24017713 None:intergenic
ATTTCCAAAGATGGAGAATG+CGG 0.626455 1.4:+24017641 None:intergenic
ATTCGGATGCACCAACGGAA+CGG 0.633751 1.4:+24017710 None:intergenic
TCATGAATAAGAGATTGTCT+AGG 0.638163 1.4:+24017463 None:intergenic
AGTTGGAGGAAGAAATTGCA+AGG 0.640534 1.4:-24017334 MS.gene88622:CDS
GCTGAGAAAGAAGCTGAGAG+AGG 0.642827 1.4:-24016740 MS.gene88622:CDS
TCCACGAACAACTTCACGAG+AGG 0.665126 1.4:+24017534 None:intergenic
GTACATTTAGCGAAAACCGG+TGG 0.676971 1.4:+24016947 None:intergenic
TGATGAAGAAGAATTCGACA+TGG 0.696259 1.4:+24017837 None:intergenic
AGGAATTGGAGTATGCTGAG+TGG 0.705496 1.4:+24017587 None:intergenic
GAATAGGCCACAAAGAGACA+CGG 0.705843 1.4:+24017609 None:intergenic
GAATGCGGAAAATATCAACA+AGG 0.731228 1.4:+24017656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGTAAAAAGAGTTAA+TGG - chr1.4:24017411-24017430 MS.gene88622:CDS 15.0%
!! TATTTAATAAGGATGAAAGT+TGG - chr1.4:24017070-24017089 MS.gene88622:CDS 20.0%
! AAAAATCAGAATTGTCTTTG+AGG - chr1.4:24017028-24017047 MS.gene88622:CDS 25.0%
! AAAATCAGAATTGTCTTTGA+GGG - chr1.4:24017029-24017048 MS.gene88622:CDS 25.0%
! AGTCAAGTTTATTTGACAAA+GGG - chr1.4:24017645-24017664 MS.gene88622:CDS 25.0%
!! TTATAATTTGATTCTGAGAG+AGG - chr1.4:24017365-24017384 MS.gene88622:CDS 25.0%
!!! TGTTTTTGTTATGATGACTA+TGG - chr1.4:24017188-24017207 MS.gene88622:CDS 25.0%
AAAGATAGCAAGGTTAACAT+AGG + chr1.4:24016857-24016876 None:intergenic 30.0%
AGTTGCAAGAGATTTGTATT+GGG - chr1.4:24017524-24017543 MS.gene88622:CDS 30.0%
GAGTCAAGTTTATTTGACAA+AGG - chr1.4:24017644-24017663 MS.gene88622:CDS 30.0%
TAGTTGCAAGAGATTTGTAT+TGG - chr1.4:24017523-24017542 MS.gene88622:CDS 30.0%
TCATGAATAAGAGATTGTCT+AGG + chr1.4:24016961-24016980 None:intergenic 30.0%
TTAATAAGGATGAAAGTTGG+AGG - chr1.4:24017073-24017092 MS.gene88622:CDS 30.0%
! AAATATCAACAAGGTGTTCA+AGG + chr1.4:24016759-24016778 None:intergenic 30.0%
! AAGCTATGATTTGTGAAGAA+GGG - chr1.4:24017547-24017566 MS.gene88622:CDS 30.0%
! ATGTTGTTTGAGAACTTTGA+TGG - chr1.4:24017246-24017265 MS.gene88622:CDS 30.0%
! ATTGAGAAAAACCCTTTTGT+GGG - chr1.4:24017603-24017622 MS.gene88622:CDS 30.0%
! ATTTTACAAGACCCAAATTG+AGG + chr1.4:24017836-24017855 None:intergenic 30.0%
! GAGTTTAAAGGGAACAATTT+TGG - chr1.4:24017276-24017295 MS.gene88622:CDS 30.0%
! GATTTTTGTGATCAGCTTTT+TGG - chr1.4:24017213-24017232 MS.gene88622:CDS 30.0%
! TATTGAGAAAAACCCTTTTG+TGG - chr1.4:24017602-24017621 MS.gene88622:CDS 30.0%
!! ATTGACTCTTTTGCTTGAAT+GGG - chr1.4:24017704-24017723 MS.gene88622:CDS 30.0%
!! TCTTTTTCACTACTCTGATA+AGG - chr1.4:24016987-24017006 MS.gene88622:CDS 30.0%
!!! GACTAGAGTTTTGTTAATGA+AGG - chr1.4:24017773-24017792 MS.gene88622:CDS 30.0%
AAAGTGAAGCATATTCGTAC+AGG - chr1.4:24017132-24017151 MS.gene88622:CDS 35.0%
AATCTTGGCCAAATACTTCA+TGG - chr1.4:24017805-24017824 MS.gene88622:CDS 35.0%
AGCAAGGTTAACATAGGAAT+TGG + chr1.4:24016851-24016870 None:intergenic 35.0%
AGTATGGAGATTTCCAAAGA+TGG + chr1.4:24016792-24016811 None:intergenic 35.0%
ATCTTGGCCAAATACTTCAT+GGG - chr1.4:24017806-24017825 MS.gene88622:CDS 35.0%
ATGGTAGGCTTGAGTTTAAA+GGG - chr1.4:24017265-24017284 MS.gene88622:CDS 35.0%
ATTGGGATAAAAGGGTTTCT+TGG - chr1.4:24017733-24017752 MS.gene88622:CDS 35.0%
ATTTCCAAAGATGGAGAATG+CGG + chr1.4:24016783-24016802 None:intergenic 35.0%
GAATGCGGAAAATATCAACA+AGG + chr1.4:24016768-24016787 None:intergenic 35.0%
GAGAGATGAAGATATTGAGT+TGG - chr1.4:24017446-24017465 MS.gene88622:CDS 35.0%
GGAGAAGGGGATATTTAATA+AGG - chr1.4:24017059-24017078 MS.gene88622:CDS 35.0%
TGAAGGCAAAAGAGAAATCT+TGG - chr1.4:24017790-24017809 MS.gene88622:CDS 35.0%
TGTGGTTGAATTCGATTTCA+CGG - chr1.4:24017331-24017350 MS.gene88622:CDS 35.0%
TTGAAGGATCAAAGATAGCA+AGG + chr1.4:24016867-24016886 None:intergenic 35.0%
TTGAATTCGATTTCACGGAT+GGG - chr1.4:24017336-24017355 MS.gene88622:CDS 35.0%
TTGGGATAAAAGGGTTTCTT+GGG - chr1.4:24017734-24017753 MS.gene88622:CDS 35.0%
TTGGTACATTTAGCGAAAAC+CGG + chr1.4:24017480-24017499 None:intergenic 35.0%
! GAAGCTATGATTTGTGAAGA+AGG - chr1.4:24017546-24017565 MS.gene88622:CDS 35.0%
! TATGATTTGTGAAGAAGGGT+TGG - chr1.4:24017551-24017570 MS.gene88622:CDS 35.0%
! TGTTTGAGAACTTTGATGGT+AGG - chr1.4:24017250-24017269 MS.gene88622:CDS 35.0%
! TTGACTCTTTTGCTTGAATG+GGG - chr1.4:24017705-24017724 MS.gene88622:CDS 35.0%
!! GATTGACTCTTTTGCTTGAA+TGG - chr1.4:24017703-24017722 MS.gene88622:CDS 35.0%
!! TTCACTTTTATGCCATCAAC+TGG + chr1.4:24017120-24017139 None:intergenic 35.0%
AGTTGGAGGAAGAAATTGCA+AGG - chr1.4:24017087-24017106 MS.gene88622:CDS 40.0%
ATCGAATTCAACCACAAACC+CGG + chr1.4:24017327-24017346 None:intergenic 40.0%
GACAAAGGGTAGATTTGAAG+AGG - chr1.4:24017659-24017678 MS.gene88622:CDS 40.0%
GAGAGAGGAAGAGATATTCT+TGG - chr1.4:24017380-24017399 MS.gene88622:CDS 40.0%
GATAAAAGGGTTTCTTGGGA+AGG - chr1.4:24017738-24017757 MS.gene88622:CDS 40.0%
GATGGTAGGCTTGAGTTTAA+AGG - chr1.4:24017264-24017283 MS.gene88622:CDS 40.0%
GGGATGTCATTGGGATAAAA+GGG - chr1.4:24017725-24017744 MS.gene88622:CDS 40.0%
GTTGAATTCGATTTCACGGA+TGG - chr1.4:24017335-24017354 MS.gene88622:CDS 40.0%
TCATGGGGAATCCTCAATTT+GGG - chr1.4:24017822-24017841 MS.gene88622:CDS 40.0%
TCTTGGCCAAATACTTCATG+GGG - chr1.4:24017807-24017826 MS.gene88622:CDS 40.0%
TTCATGGGGAATCCTCAATT+TGG - chr1.4:24017821-24017840 MS.gene88622:CDS 40.0%
! AGGATTCCCCATGAAGTATT+TGG + chr1.4:24017816-24017835 None:intergenic 40.0%
! ATTGTCTTTGAGGGATGCAA+AGG - chr1.4:24017038-24017057 MS.gene88622:CDS 40.0%
! CGCTAAATGTACCAAGGTTT+TGG - chr1.4:24017485-24017504 MS.gene88622:CDS 40.0%
! GGTTTTCGCTAAATGTACCA+AGG - chr1.4:24017479-24017498 MS.gene88622:CDS 40.0%
! TTTTCCGCATTCTCCATCTT+TGG - chr1.4:24016776-24016795 MS.gene88622:CDS 40.0%
!!! GGAACAATTTTGGTGCTGTT+TGG - chr1.4:24017286-24017305 MS.gene88622:CDS 40.0%
!!! TATTGAGTTGGTTTTGCCAC+CGG - chr1.4:24017458-24017477 MS.gene88622:CDS 40.0%
AAAGGGTTTCTTGGGAAGGT+TGG - chr1.4:24017742-24017761 MS.gene88622:CDS 45.0%
ACAACTTCACGAGAGGTTGA+AGG + chr1.4:24016883-24016902 None:intergenic 45.0%
ACATATGGCTCTCCCACAAA+AGG + chr1.4:24017618-24017637 None:intergenic 45.0%
ACTTGACTCAACGCCACATA+TGG + chr1.4:24017633-24017652 None:intergenic 45.0%
AGAAGGGTTGGAGAAGATTG+AGG - chr1.4:24017563-24017582 MS.gene88622:CDS 45.0%
AGGAATTGGAGTATGCTGAG+TGG + chr1.4:24016837-24016856 None:intergenic 45.0%
AGGGTTTAGCTGACGTTAAG+AGG + chr1.4:24016633-24016652 None:intergenic 45.0%
AGTGATTAGGGAAGGGAGTT+TGG + chr1.4:24016686-24016705 None:intergenic 45.0%
CATATGGCTCTCCCACAAAA+GGG + chr1.4:24017617-24017636 None:intergenic 45.0%
CGATGGAACTGAGTTCGTTT+CGG + chr1.4:24016660-24016679 None:intergenic 45.0%
GAAGTTGTTCGTGGACATGT+TGG - chr1.4:24016895-24016914 MS.gene88622:CDS 45.0%
GAATAGGCCACAAAGAGACA+CGG + chr1.4:24016815-24016834 None:intergenic 45.0%
GCCATGTTTGTGCCAACATT+CGG + chr1.4:24016731-24016750 None:intergenic 45.0%
GCTTGAATGGGGATGTCATT+GGG - chr1.4:24017716-24017735 MS.gene88622:CDS 45.0%
GGAACGGAGGATAGTGATTA+GGG + chr1.4:24016698-24016717 None:intergenic 45.0%
GGAGAAGATTGAGGAGTTGT+TGG - chr1.4:24017572-24017591 MS.gene88622:CDS 45.0%
GGAGGATAGTGATTAGGGAA+GGG + chr1.4:24016693-24016712 None:intergenic 45.0%
GGGGATGTCATTGGGATAAA+AGG - chr1.4:24017724-24017743 MS.gene88622:CDS 45.0%
GGGTTTAGCTGACGTTAAGA+GGG + chr1.4:24016632-24016651 None:intergenic 45.0%
GTACATTTAGCGAAAACCGG+TGG + chr1.4:24017477-24017496 None:intergenic 45.0%
TAGCTGACGTTAAGAGGGTT+TGG + chr1.4:24016627-24016646 None:intergenic 45.0%
TCCGAATGTTGGCACAAACA+TGG - chr1.4:24016727-24016746 MS.gene88622:CDS 45.0%
TGCTTGAATGGGGATGTCAT+TGG - chr1.4:24017715-24017734 MS.gene88622:CDS 45.0%
TGGAGTATGCTGAGTGGAAT+AGG + chr1.4:24016831-24016850 None:intergenic 45.0%
TTGAGGGATGCAAAGGAGAA+GGG - chr1.4:24017045-24017064 MS.gene88622:CDS 45.0%
TTTGAGGGATGCAAAGGAGA+AGG - chr1.4:24017044-24017063 MS.gene88622:CDS 45.0%
! TTTTGTGGGAGAGCCATATG+TGG - chr1.4:24017617-24017636 MS.gene88622:CDS 45.0%
!! CAAGGTCTTGTTCCAGTTGA+TGG - chr1.4:24017105-24017124 MS.gene88622:CDS 45.0%
!!! AATTTTGGTGCTGTTTGGCC+TGG - chr1.4:24017291-24017310 MS.gene88622:CDS 45.0%
!!! GTACCAAGGTTTTGGATGCA+GGG - chr1.4:24017493-24017512 MS.gene88622:CDS 45.0%
!!! TACCAAGGTTTTGGATGCAG+GGG - chr1.4:24017494-24017513 MS.gene88622:CDS 45.0%
!!! TGTACCAAGGTTTTGGATGC+AGG - chr1.4:24017492-24017511 MS.gene88622:CDS 45.0%
AAACCCGGCTTACCATTTCC+AGG + chr1.4:24017312-24017331 None:intergenic 50.0%
ACCTCTCGTGAAGTTGTTCG+TGG - chr1.4:24016886-24016905 MS.gene88622:CDS 50.0%
ACTGAGTTCGTTTCGGAGGA+AGG + chr1.4:24016653-24016672 None:intergenic 50.0%
ATCACTATCCTCCGTTCCGT+TGG - chr1.4:24016700-24016719 MS.gene88622:CDS 50.0%
ATCCCCTGCATCCAAAACCT+TGG + chr1.4:24017499-24017518 None:intergenic 50.0%
ATTCGGATGCACCAACGGAA+CGG + chr1.4:24016714-24016733 None:intergenic 50.0%
CCAACATTCGGATGCACCAA+CGG + chr1.4:24016719-24016738 None:intergenic 50.0%
CCACAAAGAGACACGGAGTA+TGG + chr1.4:24016808-24016827 None:intergenic 50.0%
CCATACTCCGTGTCTCTTTG+TGG - chr1.4:24016805-24016824 MS.gene88622:CDS 50.0%
CGGAACGGAGGATAGTGATT+AGG + chr1.4:24016699-24016718 None:intergenic 50.0%
CGGAGGATAGTGATTAGGGA+AGG + chr1.4:24016694-24016713 None:intergenic 50.0%
CTGACGTTAAGAGGGTTTGG+AGG + chr1.4:24016624-24016643 None:intergenic 50.0%
CTGAGTTCGTTTCGGAGGAA+GGG + chr1.4:24016652-24016671 None:intergenic 50.0%
CTTGGGAAGGTTGGATTGCA+TGG - chr1.4:24017751-24017770 MS.gene88622:CDS 50.0%
GAAATGGTAAGCCGGGTTTG+TGG - chr1.4:24017313-24017332 MS.gene88622:CDS 50.0%
GCTGAGAAAGAAGCTGAGAG+AGG - chr1.4:24017681-24017700 MS.gene88622:CDS 50.0%
GTGAAGACGTGAAGCTTTCG+AGG - chr1.4:24017154-24017173 MS.gene88622:CDS 50.0%
TCCACGAACAACTTCACGAG+AGG + chr1.4:24016890-24016909 None:intergenic 50.0%
TGAGGGATGCAAAGGAGAAG+GGG - chr1.4:24017046-24017065 MS.gene88622:CDS 50.0%
TGGAACTGAGTTCGTTTCGG+AGG + chr1.4:24016657-24016676 None:intergenic 50.0%
TTGGCCTGGAAATGGTAAGC+CGG - chr1.4:24017305-24017324 MS.gene88622:CDS 50.0%
CCGTTGGTGCATCCGAATGT+TGG - chr1.4:24016716-24016735 MS.gene88622:CDS 55.0%
TGGCCTGGAAATGGTAAGCC+GGG - chr1.4:24017306-24017325 MS.gene88622:CDS 55.0%
!! GGAAGGGAGTTTGGTGTCGA+TGG + chr1.4:24016677-24016696 None:intergenic 55.0%
!! GGTGCTGTTTGGCCTGGAAA+TGG - chr1.4:24017297-24017316 MS.gene88622:CDS 55.0%
CGGATGCACCAACGGAACGG+AGG + chr1.4:24016711-24016730 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 24016586 24017857 24016586 ID=MS.gene88622
chr1.4 mRNA 24016586 24017857 24016586 ID=MS.gene88622.t1;Parent=MS.gene88622
chr1.4 exon 24016586 24017857 24016586 ID=MS.gene88622.t1.exon1;Parent=MS.gene88622.t1
chr1.4 CDS 24016586 24017857 24016586 ID=cds.MS.gene88622.t1;Parent=MS.gene88622.t1
Gene Sequence

>MS.gene88622

ATGTCGAATTCTTCTTCATCAAGTTCAAGTGAATACCTCCAAACCCTCTTAACGTCAGCTAAACCCTTCCTCCGAAACGAACTCAGTTCCATCGACACCAAACTCCCTTCCCTAATCACTATCCTCCGTTCCGTTGGTGCATCCGAATGTTGGCACAAACATGGCACTTTCCTTGAACACCTTGTTGATATTTTCCGCATTCTCCATCTTTGGAAATCTCCATACTCCGTGTCTCTTTGTGGCCTATTCCACTCAGCATACTCCAATTCCTATGTTAACCTTGCTATCTTTGATCCTTCAACCTCTCGTGAAGTTGTTCGTGGACATGTTGGTGTAGAAGCTGAACGTTTGATTCATTTGTTTTGTATTGTTCCTAGACAATCTCTTATTCATGATGATCTTCTTTTTCACTACTCTGATAAGGAGCTTTTTCATGATCTTGAAAAATCAGAATTGTCTTTGAGGGATGCAAAGGAGAAGGGGATATTTAATAAGGATGAAAGTTGGAGGAAGAAATTGCAAGGTCTTGTTCCAGTTGATGGCATAAAAGTGAAGCATATTCGTACAGGTGAAGACGTGAAGCTTTCGAGGAGAATTGTCGCTGTTTTTGTTATGATGACTATGGCTGATTTTTGTGATCAGCTTTTTGGTTTTCAAGATATGTTGTTTGAGAACTTTGATGGTAGGCTTGAGTTTAAAGGGAACAATTTTGGTGCTGTTTGGCCTGGAAATGGTAAGCCGGGTTTGTGGTTGAATTCGATTTCACGGATGGGAGCTGTTTATAATTTGATTCTGAGAGAGGAAGAGATATTCTTGGAAGAAAAGAATAAAGTAAAAAGAGTTAATGGTGTTAATAGTGAGAGAGATGAAGATATTGAGTTGGTTTTGCCACCGGTTTTCGCTAAATGTACCAAGGTTTTGGATGCAGGGGATCAAATAGTTGCAAGAGATTTGTATTGGGAAGCTATGATTTGTGAAGAAGGGTTGGAGAAGATTGAGGAGTTGTTGGTGAAGAGTATTGAGAAAAACCCTTTTGTGGGAGAGCCATATGTGGCGTTGAGTCAAGTTTATTTGACAAAGGGTAGATTTGAAGAGGCTGAGAAAGAAGCTGAGAGAGGATTGACTCTTTTGCTTGAATGGGGATGTCATTGGGATAAAAGGGTTTCTTGGGAAGGTTGGATTGCATGGACTAGAGTTTTGTTAATGAAGGCAAAAGAGAAATCTTGGCCAAATACTTCATGGGGAATCCTCAATTTGGGTCTTGTAAAATAA
Protein sequence

>MS.gene88622.t1

MSNSSSSSSSEYLQTLLTSAKPFLRNELSSIDTKLPSLITILRSVGASECWHKHGTFLEHLVDIFRILHLWKSPYSVSLCGLFHSAYSNSYVNLAIFDPSTSREVVRGHVGVEAERLIHLFCIVPRQSLIHDDLLFHYSDKELFHDLEKSELSLRDAKEKGIFNKDESWRKKLQGLVPVDGIKVKHIRTGEDVKLSRRIVAVFVMMTMADFCDQLFGFQDMLFENFDGRLEFKGNNFGAVWPGNGKPGLWLNSISRMGAVYNLILREEEIFLEEKNKVKRVNGVNSERDEDIELVLPPVFAKCTKVLDAGDQIVARDLYWEAMICEEGLEKIEELLVKSIEKNPFVGEPYVALSQVYLTKGRFEEAEKEAERGLTLLLEWGCHWDKRVSWEGWIAWTRVLLMKAKEKSWPNTSWGILNLGLVK