AlfalfaGEDB | MS.gene88698

M. sativa cultivar XinJiangDaYe / MS.gene88698

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88698.t1	XP_003615503.1	93.9	425	20	2	1	419	19	443	8.60E-108	401

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88698.t1	Q9ZT96	76.1	397	84	2	34	419	55	451	2.8e-54	214.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88698.t1	G7K677	93.9	425	20	2	1	419	19	443	6.2e-108	401.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88698.t1	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049614	MS.gene88698	0.806229	9.11E-50	-1.69E-46
MS.gene055412	MS.gene88698	0.816711	4.80E-52	-1.69E-46
MS.gene056903	MS.gene88698	0.821603	3.70E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88698.t1	MTR_5g068860	93.176	425	23	2	1	419	19	443	0.0	772
MS.gene88698.t1	MTR_1g115415	51.453	344	161	1	82	419	71	414	2.36e-123	371
MS.gene88698.t1	MTR_8g105560	46.364	330	146	1	82	411	49	347	9.19e-99	309
MS.gene88698.t1	MTR_0189s0050	81.250	96	18	0	410	505	299	394	8.54e-44	162
MS.gene88698.t1	MTR_3g105990	79.167	96	20	0	410	505	301	396	1.22e-41	160
MS.gene88698.t1	MTR_4g070060	25.161	310	224	4	115	418	235	542	8.59e-21	96.3
MS.gene88698.t1	MTR_4g084630	23.237	241	148	3	155	394	46	250	2.77e-19	89.4
MS.gene88698.t1	MTR_4g084630	23.182	220	160	3	120	330	43	262	4.31e-17	82.8
MS.gene88698.t1	MTR_5g094610	27.434	226	150	6	150	368	191	409	6.86e-19	90.1
MS.gene88698.t1	MTR_5g094610	23.932	234	169	5	113	340	221	451	2.52e-13	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88698.t1	AT4G02990	70.277	397	107	2	34	419	55	451	0.0	558
MS.gene88698.t1	AT4G02990	70.277	397	107	2	34	419	55	451	0.0	558
MS.gene88698.t1	AT2G44020	48.980	343	172	1	82	421	76	418	4.47e-116	352
MS.gene88698.t1	AT2G21710	22.414	290	220	3	147	432	278	566	2.64e-22	100
MS.gene88698.t1	AT2G21710	24.820	278	193	6	81	343	274	550	3.38e-19	91.3
MS.gene88698.t1	AT2G21710	23.105	277	208	3	147	419	278	553	3.80e-22	100
MS.gene88698.t1	AT2G21710	24.820	278	193	6	81	343	274	550	3.70e-19	91.3
MS.gene88698.t1	AT2G21710	23.105	277	208	3	147	419	278	553	6.39e-22	100
MS.gene88698.t1	AT2G21710	24.820	278	193	6	81	343	274	550	5.01e-19	90.9
MS.gene88698.t1	AT3G18090	48.454	97	49	1	410	505	173	269	5.73e-21	97.4

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Find 123 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAATTCTAACATT+TGG	0.379697	5.4:-53916748	MS.gene88698:CDS
AAATCAACGTGCTTCAGCAT+AGG	0.578326	5.4:+53915653	None:intergenic
AAATCGAATCCAAGAATATA+AGG	0.400009	5.4:+53915899	None:intergenic
AAATGTGAAACATTTCATAG+GGG	0.677986	5.4:-53912198	MS.gene88698:CDS
AAATGTTTCACATTTGTCGT+CGG	0.555112	5.4:+53912206	None:intergenic
AAATTCAAAGGAAACGGGGA+GGG	0.552308	5.4:-53916564	MS.gene88698:CDS
AACAACTATCCTCTTGTATT+GGG	0.341713	5.4:-53916340	MS.gene88698:CDS
AACTAGATTCCCGGAGATTT+TGG	0.122651	5.4:-53916017	MS.gene88698:CDS
AAGCTTCAATGTTCTGTTGC+TGG	0.371075	5.4:-53916649	MS.gene88698:CDS
AATAAGAGGCTTGAGTTGGC+TGG	0.507515	5.4:-53911980	MS.gene88698:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCATGCTTGATACTTA+CGG	-	chr5.4:53913703-53913722	MS.gene88698:intron	30.0%
AAAAGATAGAATTGCCACTA+GGG	+	chr5.4:53915118-53915137	None:intergenic	30.0%
AAATCAAAATAGCGATGATG+AGG	+	chr5.4:53913303-53913322	None:intergenic	30.0%
AAATCAATCCCTGTAAATGT+TGG	+	chr5.4:53916543-53916562	None:intergenic	30.0%
AAATGTTTCACATTTGTCGT+CGG	+	chr5.4:53915492-53915511	None:intergenic	30.0%
AACAACTATCCTCTTGTATT+GGG	-	chr5.4:53911355-53911374	MS.gene88698:intron	30.0%
AACAATCTCTTTATCTGAAG+TGG	+	chr5.4:53915402-53915421	None:intergenic	30.0%
AACTTCTGATTGAAATGGTT+GGG	-	chr5.4:53916440-53916459	MS.gene88698:CDS	30.0%
AAGGATTAAAAAGAAAGGCA+CGG	-	chr5.4:53915624-53915643	MS.gene88698:CDS	30.0%
AATCAATCCCTGTAAATGTT+GGG	+	chr5.4:53916542-53916561	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	53910950	53916767	53910950	ID=MS.gene88698
chr5.4	mRNA	53910950	53916767	53910950	ID=MS.gene88698.t1;Parent=MS.gene88698
chr5.4	exon	53915540	53916767	53915540	ID=MS.gene88698.t1.exon1;Parent=MS.gene88698.t1
chr5.4	CDS	53915540	53916767	53915540	ID=cds.MS.gene88698.t1;Parent=MS.gene88698.t1
chr5.4	exon	53911981	53912309	53911981	ID=MS.gene88698.t1.exon2;Parent=MS.gene88698.t1
chr5.4	CDS	53911981	53912309	53911981	ID=cds.MS.gene88698.t1;Parent=MS.gene88698.t1
chr5.4	exon	53910950	53910970	53910950	ID=MS.gene88698.t1.exon3;Parent=MS.gene88698.t1
chr5.4	CDS	53910950	53910970	53910950	ID=cds.MS.gene88698.t1;Parent=MS.gene88698.t1

Gene Sequence

>MS.gene88698

ATGCCAATTCTAACATTTGGTCATTCTAAGTTAACTGCTGCTACACTAGCTCTTCAATTGCCATGTAATTGTATTAGGAAGGTAAGGTTTATTACAAAGCTTCAATGTTCTGTTGCTGGTAGGACGTATAGTTATAGGACCGATGCTGCTGATTCGCGGGGATCCAAACGGGACTCTGGCGAAATTCAAAGGAAACGGGGAGGGGCATCGTCGTTGTATGCCCGTCCGAGTTTATCTGAAATTAAGAAAGATAAGGCGACATTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAACTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGATATTAACAACTATCCTCTTGTATTGGGATGTAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATTGGTGTTGGAAGAAGAGAACTCGGAGGTATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGGTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGAGAAAGTGAAGCCAAACGTCAAATCCCTCGAAGAGTTTAATGTTCGGCATACATCGCTTGCCTCTATAATTGCTCAGTATCCTGACATCATTGGAACCGACCTAGAGCCGAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTGTGCTTGATTTAGATGCTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGTAGTTAGCCTCAGTACTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGTGGGTTTTCTGTGGATCAAATAAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGAAGATTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTACTAAGAAAGGATTAAAGTGTTCTCTGGCTTGGATGCTTAACTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATACATTGATGCGACCAAGGAGCGATGAATCAGATTCTGATTATGAAGACAGTGATTTTGATGATGATGATGATGAGTAAAATGATTATCATACTTTAGTAACTAGTGTCTTCCTGGGAGAATTTTGATCTTCTCTTGGATGATCTTTATACTTATAGTTTCAATGCTGTAATGTACCATTGTAAAGGTATATGATTCATTTCCAAATATTTGCATCCTAATTTTTTTTGTTTATGAGATATGGTGCTGTGTTAGCCTTCTATTGTTTTAAGATTTTACATGTTATTCAGTTTTAGTCTTTTAGACTTGTAGACCTTCTGATCTCATCTTGTACTAAAATATTTTCAGTATTAAAACTCTAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACAAGATCAAATTACGCCATAATGTTCTATCATATTTAAACTCTGTAGTTATTAAACACATGTTTGGTTTATCTTTGTTATCCTGGTTGTCCTTTTCATCATTAATTTGATTTTAACCAGGTGGTTATGAATTGCACGCTCTATAGCACCGACACTTCAAGATTGAAAATGTGTTTAGTAACTAGTTTGTCTTGGAGATTTTGATCTTCTTTTGGATGATCTTTATACCAAAAGTGTTTGCGTCCTAATTTTTTTGTTTGTATATGTGATATGATGTTGTGTTAGTGTTGTATTGTCTTAAGAATTTACGTCTTGCACGTTCTTATTAACTTTCAGAGAAGTGATGCTAATGATCTCAGCTTCAAACTAAAATATTTGTAGTACTGAAATTCTGTGGACTGTAAATGAGATGTTAGTTGACTAACCAGTAAGCTTTGAGAATATGACAGTGATTATGCTTCTTTTTAGTAAATTTATGCTTGGATTATCTCTATCAGTGGCTGTCCTCATCATCGCTATTTTGATTTTAAGCTGATGGTTATGAATTCTATATTACACTGACACTAAATATTGAAGACGTGTTTGGTGTTAAAACATGTCACTGTACTATTGACAAGACACGGACACATGTAGTTACATTTAATAATTTCATTTAACCAGATAAGTGATCCTTATCCTTCCTATTACATTTAATATCCTGTTCTTGTGTCTTCCTTATCCTTCGTATTACAAATAAGTGATCCTGATCCGGGAATCCTTCTTGAATTTTGTATAAAGAAAACCCATTTGTATGTTCTAATTTGCACATTTTTTTAGCATGATAGCCTAAAAGCCAATGAAAGACAGGAAGAAAAATAATGGAAAGAAAGTCGATAAGTTGCAATTAGAGGTGTTTTAGACTGGCCAAAAAACCATGCTTGATACTTACGGAGACCCAACTAATACTTCGGTCCAAGAATTATCTATTGAACAAAAGTCTAGTCGTAAGAAGGGTTAAACACAGCCTGTGCCGCATCCTCAACAAAGGATAATCACATTTATGCTCTGCAAAATCTGTAGCACTTCTAACAATTAATGTCATCCAATATTCGATGGTTACAAAAACTTGTTGTTCGTAACAGTCTACCAGCATCTTGACGATCATTCCATTGCCTATATATAAAGGTCGTTGGACCAAAACTCAAGTTACACACAATTTATCATTTAACCTTTGACTCTTTACTCCTTTACCATGTACCCCAAACTCGCACCATTGATGTTGTTATCAGTCCCCGCCATCATTTGATCAGGACATCTCAAATGTATCAGTACAATGTTTTTACATTGACATATATGAATTTAACTGTTATAATAAATACATTTACACATGAGAAATATTATTTGTACAATTATTTTATGACAATTTTTTGACAATTATTTTTCTCATGTTTCTCTCTCTTTCTCTCCATTGTTTTTGACCAATAAAACTTTTTTTTTTTGACTAATTGACCAATAAAACCTTACATTAACATAGTTGTATAAATATCATTACCTTTCGAACATTAAAAAGATACTTATGTTAACTAGTATAATTCAAATGTTGAAAAAGTTGATAAATTTAAAAATTCATATAATATTGGCTTTTCATCACACACTCACACCGACAGTGTACTACACAGAGTGGAGTAGCAAATCCCGTGTCTTTAAACCCTAGATTTTCAACAACCAATCCATGGGTCACGTTTGTTCAAGATCCATCAATCATGAACGAGCTGGGCAACTGACATGACCGTCTTCAGAGAATCACTCATGCTTCCAAAACCAAACTTGATATTCAACTTCAGGTTCCAATTTTTTCCTTATTTCATAAATTTTTCATTTTTTTATGTGGGTCAGCACTAATGTGTTTATGAGAAATGGATTGATTTTTGTGTCTATTTTCGAATTGTGGGTAAGTTGCAGACAAAAACACATACAATGTCTTTGATATTTTAATAATTAACACAATCTGTGTTAATTTCACGTATATATTGTGGAAAATTAAATCAAGCTAAGAAAGAAAAACAATTAACCCCTTAAGAAGATATATAATTGCCACTTGGTTGCAAAGTTTGACTTGGTCACTATTACTTGGCTATTAATGATTTTGCATAGTCATTAAGTGAAGAAAAAAAATCTGTAGCTCTGCCTCTATAGTATAATTGCAGCACCGCCTCTTATTTACTTAATATAAGGTGGTGCTGCAACTATACTATAGATGTGGTGCTGCAGATTTTTTCACTTAATGACCAAGTAAAATCCTTAATATCCAAGTAATAGAGATCAAGTCAAACTTTGCAACCCTAGTGGCAATTCTATCTTTTCTTAAGGCGGTTAGTTGTTTTTCTTTTTTAGCTTGAGTTAATTTTCTAACAATCATATATTCCGAAGAAGATTCAGAGTGATAAATTTAAAACAAGAAAAGAGGAGTATATTGATAGAGAGATAATCATGGATGATAACTTTGAGTAAGGTTTATCTATGAATTCCAGCATTGTAGGAATTAAAAACGGAGAGAAGTTGCTCACAGTATATTTTGTGTCTGTTGAGATTCTGGCATGGATACTATTTTTTGCTCTTGGGTGCCACTTCAGATAAAGAGATTGTTGATCTCATCGATTATGAAGAGGGAGATGGAAGAATTCATAACATTCATTTTGCATCCATTCGCGAAACCGACGACAAATGTGAAACATTTCATAGGGGAAAGAATGTTGTTCTTTTCTTAGAGGAACGTGTTAAGGGTGTCCAATTTACGCCCTCAAAATCTATTGATGAGTGCCTTAACTTGTATGTCTTTCCGAACATTAAAGGATTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAGGTTCTATTACTGGCCGCTGAAAAACGGATAACAGGGATGACTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTGCTTGAACACGAGATCAAAGTGCACTTTTCACATGCTTGGAAGTGAATGGGGAAGGCTCTGCAGAGAGACCTCTATGGAGATCGAGATGTTCGTCAAATTGAGCATTATCTGACGCTTCCATTATTACAAATGGTCTCTAAAGAGCGTTCTCTACTGAAACATGGACACATCCTTTTAAATGGATGGAAAGGATTTCTGGTGTCGTTGCAACTCTTTGCCGAACTAATCCATTGCAAACCATGGCTGGATTAAGAAGAACATGGTAACAAGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGTAAGTTACTTTTAACTGGCTATTTTAGTCTTTCTATAGTCTTGGTGGCGGGTGCGAAGTGTGTCAAAATAATTTTTTTATCCTAGCTGACTGAATGATAGTTAAATATCAGCATCATACCAAATCTTATAACTAACGATCCTTTTGTTTTTGGACTCAATATAACTTATCATCCTAAACAACTTAGACATGCGAAGTGAAGACCCCTTGGAATATTGCTATCAACATTAAAACCAAAATTCAACCAAACAACCAACTGTATGGTCTTTAAAACTCATGGTTCATCAATTCAATACTTTATAGTGCCACCTGTGTAGACTAGATGCCGATTTTCAGTATCAACTTCTGTAAAGCTCCCTCATCGAGGGAATGAATCTTAAAAATTAGTAACTTCTGATTGAAATGGTTGGGTAAGAAATCATGTTGAAATCTATAATCTCTTTGTTAGTCATCACTGGCGTCAGTATAACTTTATAAGTATCAACCTCCCAACATTTACAGGGATTGATTTGTTTCCGGCATTGTCTTAGTAGCTTTAGCTTTATACATGTTCTCTAGTGAAGATATCGATGTCCGTAGTACAATGAATACTTTGCTTATTATAAAAATTTAAATGATTTCATTCATTTTAATGGAAGTTTGTGGTTGCAAGCATCCTTCTCACTGGGGTAAGGTTTGTTTCCTCTCTACCCTAGATGGTGAAAATTGCGGACTAG

Protein sequence

>MS.gene88698.t1

MPILTFGHSKLTAATLALQLPCNCIRKVRFITKLQCSVAGRTYSYRTDAADSRGSKRDSGEIQRKRGGASSLYARPSLSEIKKDKATLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKPNVKSLEEFNVRHTSLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSTTPMLKHVDFLKDCGFSVDQIRKMIVGCPQLLALNIDIMKLSFDYFQNKEIVDLIDYEEGDGRIHNIHFASIRETDDKCETFHRGKNVVLFLEERVKGVQFTPSKSIDECLNLYVFPNIKGLKRKARYLAYMVKVLLLAAEKRITGMTFEIRGLSWLMVKIAD