AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049614


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049614.t1 MTR_3g062920 97.222 216 6 0 1 216 1 216 1.99e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049614.t1 AT5G58250 78.417 139 30 0 75 213 70 208 7.82e-78 233

Find 54 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTCTTGAAATTT+TGG 0.059619 3.2:+59071416 None:intergenic
CACCATCCAGATTCATATTT+AGG 0.173330 3.2:+59069416 None:intergenic
TGGGAAACTTTCTTGCCTTC+TGG 0.255591 3.2:-59069395 MS.gene049614:CDS
TGTCATTGAGCCTAAATTCT+TGG 0.289570 3.2:-59070413 MS.gene049614:CDS
GAAGAAACAGCAGTGATAAA+AGG 0.290892 3.2:+59071394 None:intergenic
AGCAGGCCTCCGCAGTTTCT+TGG 0.307372 3.2:+59070372 None:intergenic
TTTGAACGCCGTCGCTACTA+TGG 0.311898 3.2:-59070466 MS.gene049614:CDS
GGAAAACTATCCAAGAATTT+AGG 0.316224 3.2:+59070403 None:intergenic
GTTAGAAAGGATGTGCCTTT+TGG 0.329162 3.2:+59071480 None:intergenic
GGCGTTCAAATAGTTGTTCT+TGG 0.330758 3.2:+59070479 None:intergenic
TCACTCTTTACCAATGAGTT+TGG 0.337284 3.2:-59071452 MS.gene049614:CDS
GTAATAAAGAACAGGATTAC+TGG 0.370944 3.2:-59070438 MS.gene049614:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 3.2:-59069422 MS.gene049614:CDS
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 3.2:+59070382 None:intergenic
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 3.2:+59069464 None:intergenic
CTTGCCTTCTGGACAGAAAG+AGG 0.426855 3.2:-59069384 MS.gene049614:CDS
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 3.2:+59069469 None:intergenic
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 3.2:-59069451 MS.gene049614:CDS
TGCAAATGCAAAATTTATGC+TGG 0.444095 3.2:-59070518 MS.gene049614:CDS
AAGAGTGAGTTCTGTTAGAA+AGG 0.452390 3.2:+59071467 None:intergenic
CCAGATTCATATTTAGGATA+GGG 0.459432 3.2:+59069422 None:intergenic
TGCAACAATAAAATAATACT+TGG 0.464259 3.2:+59070537 None:intergenic
CAGATTCATGAAATTAAGAC+TGG 0.474576 3.2:-59069546 MS.gene049614:CDS
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 3.2:-59070446 MS.gene049614:CDS
TGCAAAATTTATGCTGGATG+AGG 0.488625 3.2:-59070512 MS.gene049614:CDS
TAGTGTCAACCAACGGTCCA+TGG 0.496162 3.2:-59070342 MS.gene049614:CDS
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 3.2:-59069450 MS.gene049614:CDS
AGTTGGTGAACTCAAAGTTA+AGG 0.501880 3.2:+59071534 None:intergenic
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 3.2:+59069472 None:intergenic
TCCAGATTCATATTTAGGAT+AGG 0.511889 3.2:+59069421 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 3.2:-59069474 MS.gene049614:CDS
GCTAGCACGATGCTTGGCAT+GGG 0.515622 3.2:-59071559 None:intergenic
GTTTGAGCTACCATTGTAGT+TGG 0.518753 3.2:+59071517 None:intergenic
TAAATATGAATCTGGATGGT+GGG 0.520478 3.2:-59069414 MS.gene049614:CDS
AGCTAGCACGATGCTTGGCA+TGG 0.522656 3.2:-59071560 None:intergenic
GTGGGAGAGACCAAACTCAT+TGG 0.524830 3.2:+59071442 None:intergenic
TTCTGATGCTCCTGCCACCA+AGG 0.526069 3.2:-59071347 MS.gene049614:intron
TCATGTTCTTACGTGATCCA+TGG 0.536324 3.2:+59070325 None:intergenic
ACAAGAGCTAGCACGATGCT+TGG 0.540081 3.2:-59071565 None:intergenic
CCACTCTTACCTCTTCCAAA+AGG 0.546522 3.2:-59071495 MS.gene049614:CDS
TTCACCTCTTTCTGTCCAGA+AGG 0.552493 3.2:+59069380 None:intergenic
TTACGTGATCCATGGACCGT+TGG 0.559376 3.2:+59070333 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 3.2:-59069415 MS.gene049614:CDS
AAAATTTATGCTGGATGAGG+AGG 0.565968 3.2:-59070509 MS.gene049614:CDS
TCTGTTCAATCTGACAACGT+TGG 0.597740 3.2:-59071373 MS.gene049614:CDS
ATCCTAAATATGAATCTGGA+TGG 0.610093 3.2:-59069418 MS.gene049614:CDS
TTTGAGTTCACCAACTACAA+TGG 0.618572 3.2:-59071527 MS.gene049614:CDS
TACGCTCTCCATAGTAGCGA+CGG 0.620144 3.2:+59070458 None:intergenic
GTTGACACTAGAGCAACAGC+AGG 0.644010 3.2:+59070355 None:intergenic
CTAGCACGATGCTTGGCATG+GGG 0.653262 3.2:-59071558 None:intergenic
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 3.2:-59069447 MS.gene049614:CDS
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 3.2:-59070349 MS.gene049614:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 3.2:-59070381 MS.gene049614:CDS
ACTTTACCAAGAAACTGCGG+AGG 0.707976 3.2:-59070378 MS.gene049614:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATTGTAAGAAATA+AGG - chr3.2:59071250-59071269 MS.gene049614:intron 10.0%
!! ATAAAAATTGTAAGAAATAA+GGG - chr3.2:59071251-59071270 MS.gene049614:intron 10.0%
!! ATATATTATTAATGTTTGAA+AGG - chr3.2:59069709-59069728 MS.gene049614:intron 10.0%
!! TATATTATTAATGTTTGAAA+GGG - chr3.2:59069710-59069729 MS.gene049614:intron 10.0%
!!! TTCAAACTTTTTGAAAATAT+TGG - chr3.2:59070801-59070820 MS.gene049614:intron 15.0%
!!! TTTATGTTTCTTGAAATTTT+GGG + chr3.2:59069509-59069528 None:intergenic 15.0%
!! TCATATTATACAACTTGAAA+GGG + chr3.2:59071231-59071250 None:intergenic 20.0%
!! TGCAACAATAAAATAATACT+TGG + chr3.2:59070389-59070408 None:intergenic 20.0%
!! TTCATATTATACAACTTGAA+AGG + chr3.2:59071232-59071251 None:intergenic 20.0%
!!! AATATTTGTTTTCTACTAAG+TGG - chr3.2:59069633-59069652 MS.gene049614:intron 20.0%
!!! ATCAAGGATTTTCAATTTTA+TGG + chr3.2:59069784-59069803 None:intergenic 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG + chr3.2:59069510-59069529 None:intergenic 20.0%
! AAAAAACAAAATGAAGACTC+TGG + chr3.2:59071105-59071124 None:intergenic 25.0%
! AGTTCATTTACGTATCAAAT+TGG - chr3.2:59070187-59070206 MS.gene049614:intron 25.0%
! ATAAACTATGACCATTCAAT+TGG - chr3.2:59070656-59070675 MS.gene049614:intron 25.0%
! GCTGTCAACATATAATAAAA+TGG - chr3.2:59071302-59071321 MS.gene049614:intron 25.0%
! TAAAAGTAGAGATGCAAAAA+GGG + chr3.2:59071180-59071199 None:intergenic 25.0%
! TCATTCTCTCTTATCTTTAA+AGG + chr3.2:59069966-59069985 None:intergenic 25.0%
! TTAAAGATAAGAGAGAATGA+TGG - chr3.2:59069966-59069985 MS.gene049614:intron 25.0%
!! AATAACTCAGATTTTAAGCT+CGG + chr3.2:59071033-59071052 None:intergenic 25.0%
!! TCAAAAAGTTTGAATTTTCC+CGG + chr3.2:59070795-59070814 None:intergenic 25.0%
!!! AGACATCTATTTTAGCTATT+AGG + chr3.2:59070876-59070895 None:intergenic 25.0%
!!! AGATGGTTCAGATTTTTTAA+TGG + chr3.2:59070950-59070969 None:intergenic 25.0%
!!! GTTCAGATTTTTTAATGGTA+GGG + chr3.2:59070945-59070964 None:intergenic 25.0%
AAGCATCTAATCCAATTGAA+TGG + chr3.2:59070670-59070689 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG - chr3.2:59071505-59071524 MS.gene049614:CDS 30.0%
ATCGTTGGATTAAAATCAGA+CGG - chr3.2:59070720-59070739 MS.gene049614:intron 30.0%
CAATTAACTGTTGTTCTTGA+TGG - chr3.2:59070268-59070287 MS.gene049614:intron 30.0%
CAGATTCATGAAATTAAGAC+TGG - chr3.2:59071377-59071396 MS.gene049614:CDS 30.0%
CTAAAAGTAGAGATGCAAAA+AGG + chr3.2:59071181-59071200 None:intergenic 30.0%
GACTCAAAATAATGTGATCA+AGG + chr3.2:59069800-59069819 None:intergenic 30.0%
GATAAGAGAAAAAGAAACCT+TGG + chr3.2:59069596-59069615 None:intergenic 30.0%
GGAAAACTATCCAAGAATTT+AGG + chr3.2:59070523-59070542 None:intergenic 30.0%
GTAATAAAGAACAGGATTAC+TGG - chr3.2:59070485-59070504 MS.gene049614:CDS 30.0%
TAAATATGAATCTGGATGGT+GGG - chr3.2:59071509-59071528 MS.gene049614:CDS 30.0%
TATTATACAACTTGAAAGGG+TGG + chr3.2:59071228-59071247 None:intergenic 30.0%
TGCAAATGCAAAATTTATGC+TGG - chr3.2:59070405-59070424 MS.gene049614:CDS 30.0%
! AGAACTACTAGTTTCATTTC+CGG - chr3.2:59070210-59070229 MS.gene049614:intron 30.0%
! ATAACTCAGATTTTAAGCTC+GGG + chr3.2:59071032-59071051 None:intergenic 30.0%
! ATTACAAGCATGCAATTTTG+AGG + chr3.2:59069757-59069776 None:intergenic 30.0%
! CCAGATTCATATTTAGGATA+GGG + chr3.2:59071504-59071523 None:intergenic 30.0%
! TCCAGATTCATATTTAGGAT+AGG + chr3.2:59071505-59071524 None:intergenic 30.0%
! TCTTGATGGTTTATAAGCAT+TGG - chr3.2:59070282-59070301 MS.gene049614:intron 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG - chr3.2:59070316-59070335 MS.gene049614:intron 30.0%
!!! GGTTCAGATTTTTTAATGGT+AGG + chr3.2:59070946-59070965 None:intergenic 30.0%
!!! TGCAATTTTGAGGTCAATTT+TGG + chr3.2:59069747-59069766 None:intergenic 30.0%
!!! TTCTTGAAATTTTGGGTTGT+GGG + chr3.2:59069502-59069521 None:intergenic 30.0%
!!! TTTCTTGAAATTTTGGGTTG+TGG + chr3.2:59069503-59069522 None:intergenic 30.0%
!!! TTTTTGTTTTTACCCCTTAG+AGG - chr3.2:59071120-59071139 MS.gene049614:intron 30.0%
AAAATTTATGCTGGATGAGG+AGG - chr3.2:59070414-59070433 MS.gene049614:CDS 35.0%
AAATTCCAGCTTAGTAGGAT+TGG + chr3.2:59071457-59071476 None:intergenic 35.0%
AAGAGAAAAAGAAACCTTGG+TGG + chr3.2:59069593-59069612 None:intergenic 35.0%
AAGAGTGAGTTCTGTTAGAA+AGG + chr3.2:59069459-59069478 None:intergenic 35.0%
AATTTGAGAAGCCTGCAAAA+TGG - chr3.2:59071472-59071491 MS.gene049614:CDS 35.0%
ACCATCTGATCTTGATTAGA+TGG - chr3.2:59070963-59070982 MS.gene049614:intron 35.0%
AGTCAATGTCAGATCACTTT+AGG + chr3.2:59070123-59070142 None:intergenic 35.0%
AGTCAGTTTAGTACCTAAAG+TGG - chr3.2:59069816-59069835 MS.gene049614:intron 35.0%
ATGAATCACCAATTCAGTTC+CGG + chr3.2:59070232-59070251 None:intergenic 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG - chr3.2:59071473-59071492 MS.gene049614:CDS 35.0%
CACCATCCAGATTCATATTT+AGG + chr3.2:59071510-59071529 None:intergenic 35.0%
CCCTATCCTAAATATGAATC+TGG - chr3.2:59071501-59071520 MS.gene049614:CDS 35.0%
CTAAATATGAATCTGGATGG+TGG - chr3.2:59071508-59071527 MS.gene049614:CDS 35.0%
GAAGAAACAGCAGTGATAAA+AGG + chr3.2:59069532-59069551 None:intergenic 35.0%
GTCAATGTCAGATCACTTTA+GGG + chr3.2:59070122-59070141 None:intergenic 35.0%
TATATGCTTGCATCAAGAGT+TGG - chr3.2:59070900-59070919 MS.gene049614:intron 35.0%
TCACGTAGTACTTATTGAGT+TGG - chr3.2:59070307-59070326 MS.gene049614:intron 35.0%
TCACTCTTTACCAATGAGTT+TGG - chr3.2:59069471-59069490 MS.gene049614:CDS 35.0%
TGCAAAATTTATGCTGGATG+AGG - chr3.2:59070411-59070430 MS.gene049614:CDS 35.0%
TGTAGATGAGAGAGAATGAT+TGG - chr3.2:59070010-59070029 MS.gene049614:intron 35.0%
TGTCATTGAGCCTAAATTCT+TGG - chr3.2:59070510-59070529 MS.gene049614:CDS 35.0%
TTAGCTATTAGGCTTAGCTT+AGG + chr3.2:59070865-59070884 None:intergenic 35.0%
TTCTCAAATTCCAGCTTAGT+AGG + chr3.2:59071462-59071481 None:intergenic 35.0%
TTTCATTTCCGGAACTGAAT+TGG - chr3.2:59070221-59070240 MS.gene049614:intron 35.0%
! TGATTGGTTAAACGAGAGAT+AGG - chr3.2:59070026-59070045 MS.gene049614:intron 35.0%
! TTTGAGTTCACCAACTACAA+TGG - chr3.2:59069396-59069415 MS.gene049614:CDS 35.0%
!! AGTTGGTGAACTCAAAGTTA+AGG + chr3.2:59069392-59069411 None:intergenic 35.0%
!! ATGACACCTTCTAGTTCATA+AGG + chr3.2:59069931-59069950 None:intergenic 35.0%
!! TATGAACTAGAAGGTGTCAT+TGG - chr3.2:59069931-59069950 MS.gene049614:intron 35.0%
!!! TAGAAGGTGTCATTGGTTTT+TGG - chr3.2:59069938-59069957 MS.gene049614:intron 35.0%
AGTCAGCATATCTCAATCGT+TGG - chr3.2:59070705-59070724 MS.gene049614:intron 40.0%
CTGACTTTACCAAGAAACTG+CGG - chr3.2:59070542-59070561 MS.gene049614:CDS 40.0%
GATAGGAACCAATGTACCTA+AGG - chr3.2:59070043-59070062 MS.gene049614:intron 40.0%
GCCATCTAATCAAGATCAGA+TGG + chr3.2:59070967-59070986 None:intergenic 40.0%
GGCGTTCAAATAGTTGTTCT+TGG + chr3.2:59070447-59070466 None:intergenic 40.0%
GTTCTCTTGAAGACCACTTT+AGG + chr3.2:59069832-59069851 None:intergenic 40.0%
GTTTGAGCTACCATTGTAGT+TGG + chr3.2:59069409-59069428 None:intergenic 40.0%
TCATAAGGCCTTCACAATCT+AGG + chr3.2:59069916-59069935 None:intergenic 40.0%
TCATGTTCTTACGTGATCCA+TGG + chr3.2:59070601-59070620 None:intergenic 40.0%
TCTGTTCAATCTGACAACGT+TGG - chr3.2:59069550-59069569 MS.gene049614:intron 40.0%
TGTCGAATCCTAGATTGTGA+AGG - chr3.2:59069905-59069924 MS.gene049614:intron 40.0%
TTAGCAACTGACACCTCTAA+GGG + chr3.2:59071136-59071155 None:intergenic 40.0%
TTTAGCAACTGACACCTCTA+AGG + chr3.2:59071137-59071156 None:intergenic 40.0%
TTTGATCTTAAGCCAGTGAC+CGG - chr3.2:59070773-59070792 MS.gene049614:intron 40.0%
! ATCAAGAGTTGGTCATCTGT+GGG - chr3.2:59070911-59070930 MS.gene049614:intron 40.0%
! GACGAAAGATTGTTCTAGCT+AGG + chr3.2:59069867-59069886 None:intergenic 40.0%
! GTTAGAAAGGATGTGCCTTT+TGG + chr3.2:59069446-59069465 None:intergenic 40.0%
! TCACAATCTAGGATTCGACA+GGG + chr3.2:59069905-59069924 None:intergenic 40.0%
! TGAAGGCCTTATGAACTAGA+AGG - chr3.2:59069922-59069941 MS.gene049614:intron 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG - chr3.2:59070477-59070496 MS.gene049614:CDS 40.0%
! TTCACAATCTAGGATTCGAC+AGG + chr3.2:59069906-59069925 None:intergenic 40.0%
! TTTTGCTTAAACCCTCCAGT+AGG + chr3.2:59070090-59070109 None:intergenic 40.0%
!! AGACTGGATCGAGTTTTATC+AGG - chr3.2:59071393-59071412 MS.gene049614:CDS 40.0%
!! GTCACTGGCTTAAGATCAAA+CGG + chr3.2:59070773-59070792 None:intergenic 40.0%
AAGGGTGGATCTCTATCTGA+TGG + chr3.2:59071213-59071232 None:intergenic 45.0%
AATCTGCCAAAACACGCACA+GGG + chr3.2:59071363-59071382 None:intergenic 45.0%
ACCAATGTACCTAAGGCCAA+TGG - chr3.2:59070050-59070069 MS.gene049614:intron 45.0%
ACTTTACCAAGAAACTGCGG+AGG - chr3.2:59070545-59070564 MS.gene049614:CDS 45.0%
CCAAGTGAAATCCTACTGGA+GGG - chr3.2:59070076-59070095 MS.gene049614:intron 45.0%
CCACTCTTACCTCTTCCAAA+AGG - chr3.2:59069428-59069447 MS.gene049614:CDS 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG + chr3.2:59070544-59070563 None:intergenic 45.0%
GCATCCAAGTGAAATCCTAC+TGG - chr3.2:59070072-59070091 MS.gene049614:intron 45.0%
GCTATTAGGCTTAGCTTAGG+TGG + chr3.2:59070862-59070881 None:intergenic 45.0%
GGATTTCACTTGGATGCCAT+TGG + chr3.2:59070069-59070088 None:intergenic 45.0%
GTTGCTCTAGTGTCAACCAA+CGG - chr3.2:59070574-59070593 MS.gene049614:intron 45.0%
TAGCAACTGACACCTCTAAG+GGG + chr3.2:59071135-59071154 None:intergenic 45.0%
TCCAAGTGAAATCCTACTGG+AGG - chr3.2:59070075-59070094 MS.gene049614:intron 45.0%
TCCATGCAGTCATGCAAATC+AGG + chr3.2:59071064-59071083 None:intergenic 45.0%
TGGGAAACTTTCTTGCCTTC+TGG - chr3.2:59071528-59071547 MS.gene049614:CDS 45.0%
TTCACCTCTTTCTGTCCAGA+AGG + chr3.2:59071546-59071565 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG + chr3.2:59071454-59071473 None:intergenic 45.0%
TTGATCTTAAGCCAGTGACC+GGG - chr3.2:59070774-59070793 MS.gene049614:intron 45.0%
! CATCAAGAGTTGGTCATCTG+TGG - chr3.2:59070910-59070929 MS.gene049614:intron 45.0%
! GAAAAAGAAACCTTGGTGGC+AGG + chr3.2:59069589-59069608 None:intergenic 45.0%
! GTTTGAATTTTCCCGGTCAC+TGG + chr3.2:59070788-59070807 None:intergenic 45.0%
! TCCTGATTTGCATGACTGCA+TGG - chr3.2:59071060-59071079 MS.gene049614:intron 45.0%
!! AAGGATGTGCCTTTTGGAAG+AGG + chr3.2:59069440-59069459 None:intergenic 45.0%
!! CCTTTTGGAAGAGGTAAGAG+TGG + chr3.2:59069431-59069450 None:intergenic 45.0%
AGCCTCCAATCCTACTAAGC+TGG - chr3.2:59071449-59071468 MS.gene049614:CDS 50.0%
ATCTGCCAAAACACGCACAG+GGG + chr3.2:59071362-59071381 None:intergenic 50.0%
CCCTCCAGTAGGATTTCACT+TGG + chr3.2:59070079-59070098 None:intergenic 50.0%
CTGCATGGATTCATGACTGC+AGG - chr3.2:59071075-59071094 MS.gene049614:intron 50.0%
CTTGCCTTCTGGACAGAAAG+AGG - chr3.2:59071539-59071558 MS.gene049614:CDS 50.0%
GAATCTGCCAAAACACGCAC+AGG + chr3.2:59071364-59071383 None:intergenic 50.0%
GTGGGAGAGACCAAACTCAT+TGG + chr3.2:59069484-59069503 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG + chr3.2:59070571-59070590 None:intergenic 50.0%
TACGCTCTCCATAGTAGCGA+CGG + chr3.2:59070468-59070487 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG - chr3.2:59070581-59070600 MS.gene049614:intron 50.0%
TGAGAAGCCTGCAAAATGGG+TGG - chr3.2:59071476-59071495 MS.gene049614:CDS 50.0%
TTACGTGATCCATGGACCGT+TGG + chr3.2:59070593-59070612 None:intergenic 50.0%
TTTGAACGCCGTCGCTACTA+TGG - chr3.2:59070457-59070476 MS.gene049614:CDS 50.0%
! GAGTTGGTCATCTGTGGGAT+TGG - chr3.2:59070916-59070935 MS.gene049614:intron 50.0%
!! ACTTGGATGCCATTGGCCTT+AGG + chr3.2:59070062-59070081 None:intergenic 50.0%
!! GCCATTGGCCTTAGGTACAT+TGG + chr3.2:59070054-59070073 None:intergenic 50.0%
TTCTGATGCTCCTGCCACCA+AGG - chr3.2:59069576-59069595 MS.gene049614:intron 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG + chr3.2:59071486-59071505 None:intergenic 55.0%
AGCAGGCCTCCGCAGTTTCT+TGG + chr3.2:59070554-59070573 None:intergenic 60.0%
! CTCTGCCCCTGTGCGTGTTT+TGG - chr3.2:59071354-59071373 MS.gene049614:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 59069373 59071572 59069373 ID=MS.gene049614
chr3.2 mRNA 59069373 59071572 59069373 ID=MS.gene049614.t1;Parent=MS.gene049614
chr3.2 exon 59071348 59071572 59071348 ID=MS.gene049614.t1.exon1;Parent=MS.gene049614.t1
chr3.2 CDS 59071348 59071572 59071348 ID=cds.MS.gene049614.t1;Parent=MS.gene049614.t1
chr3.2 exon 59070337 59070569 59070337 ID=MS.gene049614.t1.exon2;Parent=MS.gene049614.t1
chr3.2 CDS 59070337 59070569 59070337 ID=cds.MS.gene049614.t1;Parent=MS.gene049614.t1
chr3.2 exon 59069373 59069565 59069373 ID=MS.gene049614.t1.exon3;Parent=MS.gene049614.t1
chr3.2 CDS 59069373 59069565 59069373 ID=cds.MS.gene049614.t1;Parent=MS.gene049614.t1
Gene Sequence

>MS.gene049614

ATGCTTGGCATGGGGTCCTTAACTTTGAGTTCACCAACTACAATGGTAGCTCAAACCACTCTTACCTCTTCCAAAAGGCACATCCTTTCTAACAGAACTCACTCTTTACCAATGAGTTTGGTCTCTCCCACAACCCAAAATTTCAAGAAACATAAACCTTTTATCACTGCTGTTTCTTCTGTTCAATCTGACAACGTTGGTTCTTCTGATGCTCCTGCCACCAAGGTTTCTTTTTCTCTTATCTTTATTATCTCGTGTTCAATATTTGTTTTCTACTAAGTGGTTGATTTGAAATGATCTTGCAATATAACATTTACTTATTGCTCTAAATGTTTGATATATTATTAATGTTTGAAAGGGTTATTGAATCACCAAAATTGACCTCAAAATTGCATGCTTGTAATTAGTCCATAAAATTGAAAATCCTTGATCACATTATTTTGAGTCAGTTTAGTACCTAAAGTGGTCTTCAAGAGAACTTGAGTTTGAATCCTAGCTAGAACAATCTTTCGTCGAACTTTACTTTTCTCCCTGTCGAATCCTAGATTGTGAAGGCCTTATGAACTAGAAGGTGTCATTGGTTTTTGGTGCCTTTAAAGATAAGAGAGAATGATGGATGCACGATTAAAATAAATCATGTAGATGAGAGAGAATGATTGGTTAAACGAGAGATAGGAACCAATGTACCTAAGGCCAATGGCATCCAAGTGAAATCCTACTGGAGGGTTTAAGCAAAACAAAAAAGTCCCTAAAGTGATCTGACATTGACTAATGTGATCGAGTATTTTCGATTTCAGAAATCATCATACAATTTAGTTCATTTACGTATCAAATTGGAGAACTACTAGTTTCATTTCCGGAACTGAATTGGTGATTCATTAATTTTTTAGCTATGCAATTAACTGTTGTTCTTGATGGTTTATAAGCATTGGATTCACGTAGTACTTATTGAGTTGGTTTTTGTGGTAATGATTAGTCTATTCTTTTTTGTTTTGTTGCTCAGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTGGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGCCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGGCCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACGTAAGAACATGAATCAATTCTTGATTTTTCAGTGCTCAGTTTCTTTCATAAACTATGACCATTCAATTGGATTAGATGCTTATCAAAATACACTAAAGTCAGCATATCTCAATCGTTGGATTAAAATCAGACGGTTTGTATTTGAAAAAGTCTGAACTTGACCGTTTGATCTTAAGCCAGTGACCGGGAAAATTCAAACTTTTTGAAAATATTGGAAGACATTCTTAGAGTTGAATGTTGCTGCAGTTAACCACCTAAGCTAAGCCTAATAGCTAAAATAGATGTCTTTATTATATGCTTGCATCAAGAGTTGGTCATCTGTGGGATTGGATTCCCTACCATTAAAAAATCTGAACCATCTGATCTTGATTAGATGGCTCACGACATAAAGAATTTGAGTTTGATTTTTAGATATGATTTCCCGAGCTTAAAATCTGAGTTATTGAATCGATCCTGATTTGCATGACTGCATGGATTCATGACTGCAGGCAATCCAGAGTCTTCATTTTGTTTTTTGTTTTTACCCCTTAGAGGTGTCAGTTGCTAAAGATTATAAGCGTTTGATCTTCCCTTTTTGCATCTCTACTTTTAGTGTCTAGATCCATCAGATAGAGATCCACCCTTTCAAGTTGTATAATATGAATAAAAATTGTAAGAAATAAGGGTATGATCAATTAAATTTCTGCAATGCAAGCTGTCAACATATAATAAAATGGCAGCTTTTGATGTTTCAGACAAATTTTAACTCTGCCCCTGTGCGTGTTTTGGCAGATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCTTCTGGACAGAAAGAGGTGAACTCTTAA

Protein sequence

>MS.gene049614.t1

MLGMGSLTLSSPTTMVAQTTLTSSKRHILSNRTHSLPMSLVSPTTQNFKKHKPFITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS