AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89064

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89064.t1 MTR_2g103170 99.143 350 3 0 5 354 24 373 0.0 718
MS.gene89064.t1 MTR_1g011800 68.876 347 102 2 5 350 35 376 3.19e-180 504
MS.gene89064.t1 MTR_0045s0110 50.595 336 160 2 7 342 32 361 3.77e-119 349
MS.gene89064.t1 MTR_4g039740 50.599 334 159 2 9 342 34 361 2.88e-115 339
MS.gene89064.t1 MTR_4g039720 50.000 334 161 2 9 342 38 365 9.75e-115 338
MS.gene89064.t1 MTR_2g019600 46.647 343 178 1 2 344 28 365 2.40e-111 330
MS.gene89064.t1 MTR_4g039680 47.904 334 168 2 9 342 34 361 3.15e-110 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89064.t1 AT5G11420 67.341 346 108 1 5 350 26 366 5.35e-179 501
MS.gene89064.t1 AT5G25460 67.919 346 106 1 5 350 29 369 5.49e-178 498
MS.gene89064.t1 AT4G32460 67.630 346 107 1 5 350 25 365 3.53e-175 491
MS.gene89064.t1 AT4G32460 67.630 346 107 1 5 350 25 365 3.53e-175 491
MS.gene89064.t1 AT1G80240 66.472 343 110 1 5 347 28 365 1.13e-168 475
MS.gene89064.t1 AT4G32460 67.273 330 103 1 21 350 1 325 1.43e-165 465
MS.gene89064.t1 AT4G32460 67.273 330 103 1 21 350 1 325 1.43e-165 465
MS.gene89064.t1 AT3G08030 52.786 341 156 1 2 342 24 359 1.18e-122 358
MS.gene89064.t1 AT2G41800 49.709 344 168 1 5 348 32 370 2.22e-119 350
MS.gene89064.t1 AT3G08030 53.106 322 146 1 21 342 1 317 1.06e-116 341
MS.gene89064.t1 AT2G41810 48.974 341 169 1 5 345 32 367 1.31e-116 342
MS.gene89064.t1 AT2G34510 47.647 340 178 0 5 344 39 378 3.77e-112 332
MS.gene89064.t1 AT1G29980 44.767 344 186 1 5 344 3 346 4.26e-108 321
MS.gene89064.t1 AT1G29980 44.767 344 186 1 5 344 39 382 9.79e-108 321
MS.gene89064.t1 AT2G34510 47.945 292 152 0 53 344 1 292 9.36e-98 293
MS.gene89064.t1 AT5G14150 32.597 362 203 13 2 344 18 357 1.24e-41 150
MS.gene89064.t1 AT5G14150 32.597 362 203 13 2 344 18 357 1.24e-41 150

Find 85 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTAGGTTTGATGCTTT+TGG 0.196530 2.4:+2208073 None:intergenic
TCAAGTTCCTTATCAATCTA+AGG 0.227907 2.4:-2206719 MS.gene89064:CDS
TTGTCACTACTGTGCCCTTT+AGG 0.246643 2.4:+2208059 None:intergenic
TGGATAACAATTTCCCCTTC+TGG 0.270997 2.4:+2207704 None:intergenic
AAATTACCTCTGGTTCTTCT+AGG 0.274083 2.4:+2207608 None:intergenic
TATTGATTCTGTTGCCTTGA+AGG 0.280632 2.4:-2207642 MS.gene89064:CDS
CCCATGATGCCATACCTAAT+TGG 0.285226 2.4:-2208036 MS.gene89064:CDS
ATACCTAATTGGACAGTTTC+AGG 0.305431 2.4:-2208025 MS.gene89064:CDS
CAAAAGGTGAAATTAAATAA+AGG 0.320615 2.4:-2207899 MS.gene89064:CDS
TATCCTGAAACTGTCCAATT+AGG 0.329626 2.4:+2208022 None:intergenic
AAAACAAGGTGACATGCTTT+TGG 0.342997 2.4:-2207975 MS.gene89064:CDS
ACTTCTGAGAAAAGAGATTA+TGG 0.344578 2.4:-2207800 MS.gene89064:CDS
CAAGAAGTCTTCACCACAAT+TGG 0.356227 2.4:-2206835 MS.gene89064:CDS
AATACTCCCCATGATGCATT+TGG 0.357606 2.4:+2207012 None:intergenic
ACCAGAGTTATCATTCTTCA+TGG 0.360617 2.4:+2206612 None:intergenic
ATTACTTAGGTATGCTTGTT+GGG 0.366782 2.4:+2206538 None:intergenic
CATTACTTAGGTATGCTTGT+TGG 0.371408 2.4:+2206537 None:intergenic
GATAACTCTGGTTCTCTTTG+TGG 0.379593 2.4:-2206601 MS.gene89064:CDS
GGCAAAGGAGGGTTTGTTAG+AGG 0.380600 2.4:-2206697 MS.gene89064:CDS
TCCAATTAGGTATGGCATCA+TGG 0.399317 2.4:+2208035 None:intergenic
CATCTTCAACACCAGAGTTA+TGG 0.410007 2.4:+2207684 None:intergenic
CTAACAGCATAAGCACCTTC+TGG 0.410744 2.4:+2207947 None:intergenic
AAAAGGTGAAATTAAATAAA+GGG 0.413489 2.4:-2207898 MS.gene89064:CDS
CAGAAGGTGCTTATGCTGTT+AGG 0.416893 2.4:-2207946 MS.gene89064:CDS
GTTGGGAATCATTTGCTTGT+GGG 0.420479 2.4:-2207742 MS.gene89064:CDS
CTACCATACATAGTCTGTAT+TGG 0.420768 2.4:+2207770 None:intergenic
CGACAAGACGTACTAGGATT+AGG 0.425557 2.4:-2206654 MS.gene89064:CDS
CTTTCAGGTTTATTGCCAAA+TGG 0.445556 2.4:-2208112 MS.gene89064:intron
TACGTTGAATACATAAAATC+AGG 0.449032 2.4:-2208001 MS.gene89064:CDS
CCAACTTCAAAGTCACCATT+TGG 0.454460 2.4:+2208097 None:intergenic
TCATGGTGTAAAATGTACTT+AGG 0.454825 2.4:+2206629 None:intergenic
GATGCATTTGGGAACACATA+TGG 0.455308 2.4:+2207024 None:intergenic
AGGCTACGACAAGACGTACT+AGG 0.457315 2.4:-2206660 MS.gene89064:CDS
TCAACTATCCATCCTGGTAA+TGG 0.458492 2.4:+2206958 None:intergenic
ATACTCCCCATGATGCATTT+GGG 0.460441 2.4:+2207013 None:intergenic
ATGACTGTAGAAGCATTTGC+TGG 0.463295 2.4:-2206754 MS.gene89064:CDS
CCTTTGCCCTTAGATTGATA+AGG 0.464510 2.4:+2206712 None:intergenic
TACCTCTGGTTCTTCTAGGT+GGG 0.470065 2.4:+2207612 None:intergenic
AGAGCAATTGAACTTGTAGC+AGG 0.483311 2.4:-2206877 MS.gene89064:CDS
TGAAGCATACATTAAACAAA+AGG 0.487173 2.4:-2207915 MS.gene89064:CDS
CCAAAAGCATCAAACCTAAA+GGG 0.488419 2.4:-2208073 MS.gene89064:CDS
GATGCTCATGGTCCATTACC+AGG 0.489743 2.4:-2206970 MS.gene89064:CDS
TCAATAAGTGGGCCACAAGC+TGG 0.490288 2.4:+2207659 None:intergenic
CCAAATGGTGACTTTGAAGT+TGG 0.493192 2.4:-2208097 MS.gene89064:CDS
ATGTGTTCCCAAATGCATCA+TGG 0.495027 2.4:-2207020 MS.gene89064:CDS
ATTCCAATACAGACTATGTA+TGG 0.495208 2.4:-2207773 MS.gene89064:CDS
TCCAAAAGCATCAAACCTAA+AGG 0.497345 2.4:-2208074 MS.gene89064:CDS
CCAATTAGGTATGGCATCAT+GGG 0.500399 2.4:+2208036 None:intergenic
AGGTGGGTTCAAAACCTTCA+AGG 0.507765 2.4:+2207628 None:intergenic
GGTTGGGAATCATTTGCTTG+TGG 0.513196 2.4:-2207743 MS.gene89064:CDS
TATGTATGGTAGCAATGGTT+GGG 0.515899 2.4:-2207759 MS.gene89064:CDS
TGTGTTCCCAAATGCATCAT+GGG 0.517111 2.4:-2207019 MS.gene89064:CDS
CAAGTTCCTTATCAATCTAA+GGG 0.522342 2.4:-2206718 MS.gene89064:CDS
TTACCTCTGGTTCTTCTAGG+TGG 0.537982 2.4:+2207611 None:intergenic
AGAGATTCAACTATCCATCC+TGG 0.540762 2.4:+2206952 None:intergenic
CTATGTATGGTAGCAATGGT+TGG 0.542393 2.4:-2207760 MS.gene89064:CDS
GAAATTGTTATCCATAACTC+TGG 0.550258 2.4:-2207695 MS.gene89064:CDS
AAGGCAACAGAATCAATAAG+TGG 0.552750 2.4:+2207647 None:intergenic
TGAAACTGTCCAATTAGGTA+TGG 0.554450 2.4:+2208027 None:intergenic
TATCAATCTAAGGGCAAAGG+AGG 0.558454 2.4:-2206709 MS.gene89064:CDS
TTTAGAGCTGATTATCCAGA+AGG 0.574156 2.4:-2207719 MS.gene89064:CDS
CCTTATCAATCTAAGGGCAA+AGG 0.577087 2.4:-2206712 MS.gene89064:CDS
GGTGCTTATGCTGTTAGGCT+AGG 0.577781 2.4:-2207941 MS.gene89064:CDS
CAGACTATGTATGGTAGCAA+TGG 0.586345 2.4:-2207764 MS.gene89064:CDS
CTCATGGTCCATTACCAGGA+TGG 0.588455 2.4:-2206966 MS.gene89064:CDS
GTTGAAGATGATCCAGCTTG+TGG 0.588645 2.4:-2207671 MS.gene89064:CDS
TCTCTTCACATGGCTTACAA+AGG 0.593441 2.4:-2208412 None:intergenic
ATTGATCCCACCACACATTG+AGG 0.605497 2.4:-2206992 MS.gene89064:CDS
TAGAGCTGATTATCCAGAAG+GGG 0.606448 2.4:-2207717 MS.gene89064:CDS
ATCAATCTAAGGGCAAAGGA+GGG 0.607832 2.4:-2206708 MS.gene89064:CDS
GAGCATCCTCAATGTGTGGT+GGG 0.618690 2.4:+2206986 None:intergenic
AGAGAAGCTTAATGTGTCAG+TGG 0.619453 2.4:-2207828 MS.gene89064:CDS
GAGCAATTGAACTTGTAGCA+GGG 0.620186 2.4:-2206876 MS.gene89064:CDS
CCACACATTGAGGATGCTCA+TGG 0.621467 2.4:-2206982 MS.gene89064:CDS
TTAGAGCTGATTATCCAGAA+GGG 0.629847 2.4:-2207718 MS.gene89064:CDS
AGGCAACAGAATCAATAAGT+GGG 0.639484 2.4:+2207648 None:intergenic
TGAGCATCCTCAATGTGTGG+TGG 0.646759 2.4:+2206985 None:intergenic
GCGAGCTGCACTGAACGTGA+TGG 0.648755 2.4:+2207865 None:intergenic
GAACACTTCACAGTACCAGA+AGG 0.657571 2.4:-2206904 MS.gene89064:CDS
CATCACCAACTGCAAAAGTG+AGG 0.664865 2.4:+2206800 None:intergenic
GATGCTAATAATGCATGTGA+AGG 0.670003 2.4:-2206781 MS.gene89064:CDS
GTGTTCCCAAATGCATCATG+GGG 0.678543 2.4:-2207018 MS.gene89064:CDS
ACCATGAAGAATGATAACTC+TGG 0.691442 2.4:-2206613 MS.gene89064:CDS
CCATGAGCATCCTCAATGTG+TGG 0.691876 2.4:+2206982 None:intergenic
AACCCACCTAGAAGAACCAG+AGG 0.693541 2.4:-2207614 MS.gene89064:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGGTGAAATTAAATAAA+GGG - chr2.4:2207048-2207067 MS.gene89064:CDS 15.0%
!! ACAAAAATATTCAATCATAT+TGG + chr2.4:2207745-2207764 None:intergenic 15.0%
!! TTGATGTATCAAATTAAATT+TGG - chr2.4:2207826-2207845 MS.gene89064:CDS 15.0%
!!! CAACTTTTATTTATATATCT+AGG - chr2.4:2206645-2206664 MS.gene89064:CDS 15.0%
!!! GAAAGAATTTTAAATTGATA+AGG + chr2.4:2206819-2206838 None:intergenic 15.0%
!!! TATCAATTTAAAATTCTTTC+AGG - chr2.4:2206819-2206838 MS.gene89064:CDS 15.0%
!!! TTGAATATTTTTGTACATTA+TGG - chr2.4:2207751-2207770 MS.gene89064:CDS 15.0%
!! ATTCTTAATTTAATGCAAAG+AGG - chr2.4:2207793-2207812 MS.gene89064:CDS 20.0%
!! CAAAAGGTGAAATTAAATAA+AGG - chr2.4:2207047-2207066 MS.gene89064:CDS 20.0%
!! TAGTAAAATACAATTAAGCT+AGG + chr2.4:2207435-2207454 None:intergenic 20.0%
!! TGTATACAAATTTAGATACA+TGG + chr2.4:2207389-2207408 None:intergenic 20.0%
!!! AACTATTGTTTTTGTTTGTT+TGG - chr2.4:2207859-2207878 MS.gene89064:CDS 20.0%
!!! AATTTTACATCATCAATAAC+AGG + chr2.4:2208372-2208391 None:intergenic 20.0%
!!! AGAAAAATTTTCCTATCATA+AGG - chr2.4:2206720-2206739 MS.gene89064:CDS 20.0%
!!! GTTTCCATTTTTCAATAAAT+TGG + chr2.4:2207890-2207909 None:intergenic 20.0%
!!! TATATTTTCCACACAAAAAA+AGG + chr2.4:2206684-2206703 None:intergenic 20.0%
!!! TTTTTTTGTGTGGAAAATAT+AGG - chr2.4:2206683-2206702 MS.gene89064:CDS 20.0%
! AATTGTTTGAACCTTATGAT+AGG + chr2.4:2206734-2206753 None:intergenic 25.0%
! ACTCCATACATGTAATTAAA+CGG - chr2.4:2207718-2207737 MS.gene89064:CDS 25.0%
! ATAAAATCAGGACAAAAACA+AGG - chr2.4:2206957-2206976 MS.gene89064:CDS 25.0%
! GCATATATTTATGATGTGTT+TGG - chr2.4:2207599-2207618 MS.gene89064:intron 25.0%
! TACGTTGAATACATAAAATC+AGG - chr2.4:2206945-2206964 MS.gene89064:CDS 25.0%
! TGAAGCATACATTAAACAAA+AGG - chr2.4:2207031-2207050 MS.gene89064:CDS 25.0%
!! AAAAATGGAAACTTTGAAGA+AGG - chr2.4:2207898-2207917 MS.gene89064:CDS 25.0%
!!! TATGTATACCTTTTTTTGTG+TGG - chr2.4:2206673-2206692 MS.gene89064:CDS 25.0%
ATTCCAATACAGACTATGTA+TGG - chr2.4:2207173-2207192 MS.gene89064:intron 30.0%
CAAGTTCCTTATCAATCTAA+GGG - chr2.4:2208228-2208247 MS.gene89064:intron 30.0%
GAAATTGTTATCCATAACTC+TGG - chr2.4:2207251-2207270 MS.gene89064:intron 30.0%
GCAGCCAATTTATTGAAAAA+TGG - chr2.4:2207883-2207902 MS.gene89064:CDS 30.0%
TCAAGTTCCTTATCAATCTA+AGG - chr2.4:2208227-2208246 MS.gene89064:intron 30.0%
TCATGGTGTAAAATGTACTT+AGG + chr2.4:2208320-2208339 None:intergenic 30.0%
TTATGATGTGTTTGGATTGA+CGG - chr2.4:2207607-2207626 MS.gene89064:intron 30.0%
! ACTTCTGAGAAAAGAGATTA+TGG - chr2.4:2207146-2207165 MS.gene89064:intron 30.0%
! GACATAAACTTTTCCAATTG+TGG + chr2.4:2208127-2208146 None:intergenic 30.0%
! GTTAATGTGATTTTCGCAAT+TGG - chr2.4:2207653-2207672 MS.gene89064:CDS 30.0%
! TAATCTCTTTTCTCAGAAGT+TGG + chr2.4:2207146-2207165 None:intergenic 30.0%
!!! TCTTTTTCAAGAGCACTTTT+TGG + chr2.4:2206620-2206639 None:intergenic 30.0%
AAGGCAACAGAATCAATAAG+TGG + chr2.4:2207302-2207321 None:intergenic 35.0%
ACCAGAGTTATCATTCTTCA+TGG + chr2.4:2208337-2208356 None:intergenic 35.0%
ACCATGAAGAATGATAACTC+TGG - chr2.4:2208333-2208352 MS.gene89064:intron 35.0%
AGGCAACAGAATCAATAAGT+GGG + chr2.4:2207301-2207320 None:intergenic 35.0%
ATACCTAATTGGACAGTTTC+AGG - chr2.4:2206921-2206940 MS.gene89064:CDS 35.0%
CTAACATGTTCCTTATCACA+TGG - chr2.4:2206584-2206603 MS.gene89064:CDS 35.0%
CTACCATACATAGTCTGTAT+TGG + chr2.4:2207179-2207198 None:intergenic 35.0%
GATGCTAATAATGCATGTGA+AGG - chr2.4:2208165-2208184 MS.gene89064:intron 35.0%
GGACCGTTTAATTACATGTA+TGG + chr2.4:2207724-2207743 None:intergenic 35.0%
GTGGAAAATATAGGTCTCAT+GGG - chr2.4:2206692-2206711 MS.gene89064:CDS 35.0%
TAGGGAACAAAAATTACCTC+TGG + chr2.4:2207351-2207370 None:intergenic 35.0%
TATCCTGAAACTGTCCAATT+AGG + chr2.4:2206927-2206946 None:intergenic 35.0%
TATGTATGGTAGCAATGGTT+GGG - chr2.4:2207187-2207206 MS.gene89064:intron 35.0%
TGAAACTGTCCAATTAGGTA+TGG + chr2.4:2206922-2206941 None:intergenic 35.0%
TGGAAAATATAGGTCTCATG+GGG - chr2.4:2206693-2206712 MS.gene89064:CDS 35.0%
TGTGGAAAATATAGGTCTCA+TGG - chr2.4:2206691-2206710 MS.gene89064:CDS 35.0%
TTAGAGCTGATTATCCAGAA+GGG - chr2.4:2207228-2207247 MS.gene89064:intron 35.0%
! AAAACAAGGTGACATGCTTT+TGG - chr2.4:2206971-2206990 MS.gene89064:CDS 35.0%
! TAGAGGCAAACTTCGTTTTA+AGG - chr2.4:2208266-2208285 MS.gene89064:intron 35.0%
! TCAATTGCTCTTTTTCCTTC+TGG + chr2.4:2208060-2208079 None:intergenic 35.0%
! TTTAGAGCTGATTATCCAGA+AGG - chr2.4:2207227-2207246 MS.gene89064:intron 35.0%
!! AAATTACCTCTGGTTCTTCT+AGG + chr2.4:2207341-2207360 None:intergenic 35.0%
!! CCAAAAGCATCAAACCTAAA+GGG - chr2.4:2206873-2206892 MS.gene89064:CDS 35.0%
!! CTTTCAGGTTTATTGCCAAA+TGG - chr2.4:2206834-2206853 MS.gene89064:CDS 35.0%
!! TATTGATTCTGTTGCCTTGA+AGG - chr2.4:2207304-2207323 MS.gene89064:intron 35.0%
!! TCCAAAAGCATCAAACCTAA+AGG - chr2.4:2206872-2206891 MS.gene89064:CDS 35.0%
AATACTCCCCATGATGCATT+TGG + chr2.4:2207937-2207956 None:intergenic 40.0%
ACATGTTCCTTATCACATGG+TGG - chr2.4:2206587-2206606 MS.gene89064:CDS 40.0%
AGAGAAGCTTAATGTGTCAG+TGG - chr2.4:2207118-2207137 MS.gene89064:intron 40.0%
AGAGATTCAACTATCCATCC+TGG + chr2.4:2207997-2208016 None:intergenic 40.0%
AGAGCAATTGAACTTGTAGC+AGG - chr2.4:2208069-2208088 MS.gene89064:CDS 40.0%
AGGAACATGTTAGTAAGTGC+AGG + chr2.4:2206577-2206596 None:intergenic 40.0%
ATACTCCCCATGATGCATTT+GGG + chr2.4:2207936-2207955 None:intergenic 40.0%
ATCAATCTAAGGGCAAAGGA+GGG - chr2.4:2208238-2208257 MS.gene89064:intron 40.0%
ATGGACATGCACTTCTATGT+AGG + chr2.4:2207370-2207389 None:intergenic 40.0%
ATGTGTTCCCAAATGCATCA+TGG - chr2.4:2207926-2207945 MS.gene89064:CDS 40.0%
CAAGAAGTCTTCACCACAAT+TGG - chr2.4:2208111-2208130 MS.gene89064:intron 40.0%
CAGACTATGTATGGTAGCAA+TGG - chr2.4:2207182-2207201 MS.gene89064:intron 40.0%
CATCTTCAACACCAGAGTTA+TGG + chr2.4:2207265-2207284 None:intergenic 40.0%
CCAACTTCAAAGTCACCATT+TGG + chr2.4:2206852-2206871 None:intergenic 40.0%
CCAATTAGGTATGGCATCAT+GGG + chr2.4:2206913-2206932 None:intergenic 40.0%
CCTTATCAATCTAAGGGCAA+AGG - chr2.4:2208234-2208253 MS.gene89064:intron 40.0%
CCTTTGCCCTTAGATTGATA+AGG + chr2.4:2208237-2208256 None:intergenic 40.0%
CTATGTATGGTAGCAATGGT+TGG - chr2.4:2207186-2207205 MS.gene89064:intron 40.0%
GAGCAATTGAACTTGTAGCA+GGG - chr2.4:2208070-2208089 MS.gene89064:CDS 40.0%
GATGCATTTGGGAACACATA+TGG + chr2.4:2207925-2207944 None:intergenic 40.0%
GTTGGGAATCATTTGCTTGT+GGG - chr2.4:2207204-2207223 MS.gene89064:intron 40.0%
TAGAGCTGATTATCCAGAAG+GGG - chr2.4:2207229-2207248 MS.gene89064:intron 40.0%
TATCAATCTAAGGGCAAAGG+AGG - chr2.4:2208237-2208256 MS.gene89064:intron 40.0%
TCAACTATCCATCCTGGTAA+TGG + chr2.4:2207991-2208010 None:intergenic 40.0%
TCCAATTAGGTATGGCATCA+TGG + chr2.4:2206914-2206933 None:intergenic 40.0%
TCTTGTTCCACCATGTGATA+AGG + chr2.4:2206597-2206616 None:intergenic 40.0%
TGGACATGCACTTCTATGTA+GGG + chr2.4:2207369-2207388 None:intergenic 40.0%
TGGATAACAATTTCCCCTTC+TGG + chr2.4:2207245-2207264 None:intergenic 40.0%
TGTGTTCCCAAATGCATCAT+GGG - chr2.4:2207927-2207946 MS.gene89064:CDS 40.0%
!! ATGACTGTAGAAGCATTTGC+TGG - chr2.4:2208192-2208211 MS.gene89064:intron 40.0%
!! ATGCTTTTGGTTGTACCAGA+AGG - chr2.4:2206984-2207003 MS.gene89064:CDS 40.0%
!! CCAAATGGTGACTTTGAAGT+TGG - chr2.4:2206849-2206868 MS.gene89064:CDS 40.0%
!! CCCTTTAGGTTTGATGCTTT+TGG + chr2.4:2206876-2206895 None:intergenic 40.0%
!! GATAACTCTGGTTCTCTTTG+TGG - chr2.4:2208345-2208364 MS.gene89064:intron 40.0%
!! TATGTCCTCACTTTTGCAGT+TGG - chr2.4:2208141-2208160 MS.gene89064:intron 40.0%
ATGTTAGTAAGTGCAGGCTG+TGG + chr2.4:2206571-2206590 None:intergenic 45.0%
ATTGATCCCACCACACATTG+AGG - chr2.4:2207954-2207973 MS.gene89064:CDS 45.0%
CATCACCAACTGCAAAAGTG+AGG + chr2.4:2208149-2208168 None:intergenic 45.0%
CCCATGATGCCATACCTAAT+TGG - chr2.4:2206910-2206929 MS.gene89064:CDS 45.0%
CGACAAGACGTACTAGGATT+AGG - chr2.4:2208292-2208311 MS.gene89064:intron 45.0%
CTAACAGCATAAGCACCTTC+TGG + chr2.4:2207002-2207021 None:intergenic 45.0%
GAACACTTCACAGTACCAGA+AGG - chr2.4:2208042-2208061 MS.gene89064:CDS 45.0%
GGTTGGGAATCATTTGCTTG+TGG - chr2.4:2207203-2207222 MS.gene89064:intron 45.0%
GTGTTCCCAAATGCATCATG+GGG - chr2.4:2207928-2207947 MS.gene89064:CDS 45.0%
GTTGAAGATGATCCAGCTTG+TGG - chr2.4:2207275-2207294 MS.gene89064:intron 45.0%
TGTTAGTAAGTGCAGGCTGT+GGG + chr2.4:2206570-2206589 None:intergenic 45.0%
TTGTCACTACTGTGCCCTTT+AGG + chr2.4:2206890-2206909 None:intergenic 45.0%
! AGGTGGGTTCAAAACCTTCA+AGG + chr2.4:2207321-2207340 None:intergenic 45.0%
!! CAGAAGGTGCTTATGCTGTT+AGG - chr2.4:2207000-2207019 MS.gene89064:CDS 45.0%
!! TACCTCTGGTTCTTCTAGGT+GGG + chr2.4:2207337-2207356 None:intergenic 45.0%
!! TTACCTCTGGTTCTTCTAGG+TGG + chr2.4:2207338-2207357 None:intergenic 45.0%
AACCCACCTAGAAGAACCAG+AGG - chr2.4:2207332-2207351 MS.gene89064:intron 50.0%
AGGCTACGACAAGACGTACT+AGG - chr2.4:2208286-2208305 MS.gene89064:intron 50.0%
CCACACATTGAGGATGCTCA+TGG - chr2.4:2207964-2207983 MS.gene89064:CDS 50.0%
CCATGAGCATCCTCAATGTG+TGG + chr2.4:2207967-2207986 None:intergenic 50.0%
CTCATGGTCCATTACCAGGA+TGG - chr2.4:2207980-2207999 MS.gene89064:CDS 50.0%
GAGCATCCTCAATGTGTGGT+GGG + chr2.4:2207963-2207982 None:intergenic 50.0%
GATGCTCATGGTCCATTACC+AGG - chr2.4:2207976-2207995 MS.gene89064:CDS 50.0%
GGTGCTTATGCTGTTAGGCT+AGG - chr2.4:2207005-2207024 MS.gene89064:CDS 50.0%
TCAATAAGTGGGCCACAAGC+TGG + chr2.4:2207290-2207309 None:intergenic 50.0%
TGAGCATCCTCAATGTGTGG+TGG + chr2.4:2207964-2207983 None:intergenic 50.0%
!! GGCAAAGGAGGGTTTGTTAG+AGG - chr2.4:2208249-2208268 MS.gene89064:intron 50.0%
GCGAGCTGCACTGAACGTGA+TGG + chr2.4:2207084-2207103 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 2206543 2208425 2206543 ID=MS.gene89064
chr2.4 mRNA 2206543 2208425 2206543 ID=MS.gene89064.t1;Parent=MS.gene89064
chr2.4 exon 2208413 2208425 2208413 ID=MS.gene89064.t1.exon1;Parent=MS.gene89064.t1
chr2.4 CDS 2208413 2208425 2208413 ID=cds.MS.gene89064.t1;Parent=MS.gene89064.t1
chr2.4 exon 2207615 2208127 2207615 ID=MS.gene89064.t1.exon2;Parent=MS.gene89064.t1
chr2.4 CDS 2207615 2208127 2207615 ID=cds.MS.gene89064.t1;Parent=MS.gene89064.t1
chr2.4 exon 2206543 2207081 2206543 ID=MS.gene89064.t1.exon3;Parent=MS.gene89064.t1
chr2.4 CDS 2206543 2207081 2206543 ID=cds.MS.gene89064.t1;Parent=MS.gene89064.t1
Gene Sequence

>MS.gene89064

ATGGCTTACAAAGGTTTGCATGTGCCCACAGCCTGCACTTACTAACATGTTCCTTATCACATGGTGGAACAAGACCAAAAAGTGCTCTTGAAAAAGATATTTCAACTTTTATTTATATATCTAGGTGTCATATGTATACCTTTTTTTGTGTGGAAAATATAGGTCTCATGGGGATGTAGAAAAATTTTCCTATCATAAGGTTCAAACAATTTAATCTTTTAAATTTACGAAATATCACACAAATCTTTTAAATTTAAAAAATATCGATTTAGTCCTTATCAATTTAAAATTCTTTCAGGTTTATTGCCAAATGGTGACTTTGAAGTTGGTCCAAAAGCATCAAACCTAAAGGGCACAGTAGTGACAACCCATGATGCCATACCTAATTGGACAGTTTCAGGATACGTTGAATACATAAAATCAGGACAAAAACAAGGTGACATGCTTTTGGTTGTACCAGAAGGTGCTTATGCTGTTAGGCTAGGAAATGAAGCATACATTAAACAAAAGGTGAAATTAAATAAAGGGTCATCTTATTCCATCACGTTCAGTGCAGCTCGCACGTGTGCACAAGAAGAGAAGCTTAATGTGTCAGTGGTACCAACTTCTGAGAAAAGAGATTATGGTATCATTCCAATACAGACTATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCTGATTATCCAGAAGGGGAAATTGTTATCCATAACTCTGGTGTTGAAGATGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCTAGAAGAACCAGAGGTAATTTTTGTTCCCTACATAGAAGTGCATGTCCATGTATCTAAATTTGTATACATTGATATTGTGCACAAAATTCTACCTAGCTTAATTGTATTTTACTATTTACATATATCATAATGTTATTATTTAAAGTATCTAAATAAATAATAATATGATGATATCATGACTTTGACAAAAGCTACATGTTATAATTTTAACAAAATCAAAGTGTCTTCATGATTTCGTCAAATTCATTGTGATTTCAAGCATATATTTATGATGTGTTTGGATTGACGGTAAACATGTCACAATCACAGTGTGTTAATGTGATTTTCGCAATTGGAGACAAAGTATCACACACAATGTCATAGTCAAATACATTGTGACTCCATACATGTAATTAAACGGTCCAATATGATTGAATATTTTTGTACATTATGGTTTTTTACATACAAATAAAATTCTTAATTTAATGCAAAGAGGATTAAACTATTTGATGTATCAAATTAAATTTGGATTGAAGTTTAACTATTGTTTTTGTTTGTTTGGTGCAGCCAATTTATTGAAAAATGGAAACTTTGAAGAAGGACCATATGTGTTCCCAAATGCATCATGGGGAGTATTGATCCCACCACACATTGAGGATGCTCATGGTCCATTACCAGGATGGATAGTTGAATCTCTCAAAGCAGTGAAATACATTGATTCTGAACACTTCACAGTACCAGAAGGAAAAAGAGCAATTGAACTTGTAGCAGGGAAAGAAAGTGCACTTGCACAAGAAGTCTTCACCACAATTGGAAAAGTTTATGTCCTCACTTTTGCAGTTGGTGATGCTAATAATGCATGTGAAGGTTCTATGACTGTAGAAGCATTTGCTGGTAGAGACACTGTTCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTTTGTTAGAGGCAAACTTCGTTTTAAGGCTACGACAAGACGTACTAGGATTAGGTTCCTAAGTACATTTTACACCATGAAGAATGATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTAAAATTGCTTAGTGTTCGTTATCCCAACAAGCATACCTAA
Protein sequence

>MS.gene89064.t1

MAYKGLLPNGDFEVGPKASNLKGTVVTTHDAIPNWTVSGYVEYIKSGQKQGDMLLVVPEGAYAVRLGNEAYIKQKVKLNKGSSYSITFSAARTCAQEEKLNVSVVPTSEKRDYGIIPIQTMYGSNGWESFACGFRADYPEGEIVIHNSGVEDDPACGPLIDSVALKVLNPPRRTRANLLKNGNFEEGPYVFPNASWGVLIPPHIEDAHGPLPGWIVESLKAVKYIDSEHFTVPEGKRAIELVAGKESALAQEVFTTIGKVYVLTFAVGDANNACEGSMTVEAFAGRDTVQVPYQSKGKGGFVRGKLRFKATTRRTRIRFLSTFYTMKNDNSGSLCGPVIDDVKLLSVRYPNKHT