Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89152.t1 | XP_013444467.1 | 98.4 | 449 | 7 | 0 | 1 | 449 | 1 | 449 | 3.10E-255 | 890.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89152.t1 | Q28EW0 | 34.6 | 260 | 163 | 4 | 191 | 448 | 197 | 451 | 2.2e-36 | 154.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89152.t1 | A0A072TM56 | 98.4 | 449 | 7 | 0 | 1 | 449 | 1 | 449 | 2.2e-255 | 890.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051087 | MS.gene89152 | 0.869524 | 2.90E-66 | -1.69E-46 |
| MS.gene056520 | MS.gene89152 | 0.832858 | 7.44E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89152.t1 | MTR_8g021310 | 98.441 | 449 | 7 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
| MS.gene89152.t1 | MTR_2g007740 | 58.796 | 432 | 174 | 3 | 20 | 448 | 23 | 453 | 0.0 | 536 |
| MS.gene89152.t1 | MTR_5g067670 | 52.954 | 457 | 200 | 5 | 7 | 449 | 21 | 476 | 1.55e-169 | 487 |
| MS.gene89152.t1 | MTR_8g005790 | 48.989 | 445 | 202 | 5 | 17 | 449 | 25 | 456 | 8.24e-138 | 405 |
| MS.gene89152.t1 | MTR_8g005485 | 42.212 | 443 | 197 | 7 | 19 | 449 | 27 | 422 | 6.48e-112 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89152.t1 | AT1G72480 | 73.550 | 431 | 114 | 0 | 19 | 449 | 18 | 448 | 0.0 | 676 |
| MS.gene89152.t1 | AT2G01070 | 55.353 | 439 | 181 | 3 | 14 | 448 | 18 | 445 | 4.35e-179 | 508 |
| MS.gene89152.t1 | AT2G01070 | 55.353 | 439 | 181 | 3 | 14 | 448 | 18 | 445 | 2.37e-178 | 508 |
| MS.gene89152.t1 | AT1G61670 | 50.442 | 452 | 212 | 3 | 9 | 449 | 14 | 464 | 4.18e-155 | 449 |
| MS.gene89152.t1 | AT1G61670 | 50.442 | 452 | 212 | 3 | 9 | 449 | 14 | 464 | 4.18e-155 | 449 |
| MS.gene89152.t1 | AT1G10980 | 38.816 | 456 | 259 | 9 | 6 | 447 | 10 | 459 | 4.40e-102 | 314 |
Find 112 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAATATGTTAGATTT+TGG | 0.195422 | 8.1:+78142182 | MS.gene89152:CDS |
| CTTAAGGATTTGGTTGTAGA+AGG | 0.250919 | 8.1:+78142049 | MS.gene89152:CDS |
| TAGACGTGTTCTTCATTCTT+TGG | 0.274888 | 8.1:+78142569 | MS.gene89152:CDS |
| TGATCCAAGGCTTAAGGATT+TGG | 0.284489 | 8.1:+78142039 | MS.gene89152:CDS |
| CTTGGATCATCCCAGCCTTT+TGG | 0.296514 | 8.1:+78143213 | MS.gene89152:CDS |
| ATGTGTTGCTTGGGATCTTT+TGG | 0.297305 | 8.1:+78142158 | MS.gene89152:CDS |
| CAGAAGGATGATGATAAAAT+TGG | 0.319028 | 8.1:+78142847 | MS.gene89152:CDS |
| CGGTGCAATAAGTGATCTTT+CGG | 0.324651 | 8.1:+78142507 | MS.gene89152:CDS |
| TGTGTGTCATCTGTGTTGTC+TGG | 0.328516 | 8.1:+78143258 | MS.gene89152:CDS |
| TGTCTGTTGCACTGGTGATC+TGG | 0.344568 | 8.1:+78141841 | MS.gene89152:CDS |
| CCGTCCTTCTACAGTGAATT+CGG | 0.349432 | 8.1:+78141901 | MS.gene89152:CDS |
| ACAACAAAAGCGTTGCCTTT+GGG | 0.350791 | 8.1:-78140834 | None:intergenic |
| TGCAACTTTGAATAAGCTTC+AGG | 0.353143 | 8.1:+78142609 | MS.gene89152:CDS |
| GACAACAAAAGCGTTGCCTT+TGG | 0.359766 | 8.1:-78140835 | None:intergenic |
| GATTCCTGTTTCGCTAAATT+CGG | 0.371232 | 8.1:-78142290 | None:intergenic |
| AGAGAAAGAGGTTTCATTGA+GGG | 0.381199 | 8.1:-78140889 | None:intergenic |
| AGGAATTGAAGGAGAGAAAG+AGG | 0.392808 | 8.1:-78140901 | None:intergenic |
| ACTGTATGGGCAGTTACCTT+TGG | 0.396776 | 8.1:+78142328 | MS.gene89152:CDS |
| TCCTTTGCATATGTGTTGCT+TGG | 0.397047 | 8.1:+78142148 | MS.gene89152:CDS |
| TGATAAAATTGGATATGTAT+AGG | 0.397388 | 8.1:+78142858 | MS.gene89152:CDS |
| TCACTGTGATCCAAGGCTTA+AGG | 0.398022 | 8.1:+78142033 | MS.gene89152:CDS |
| GGTGCAATAAGTGATCTTTC+GGG | 0.400446 | 8.1:+78142508 | MS.gene89152:CDS |
| CAATTCCTGACTCTTTCATA+AGG | 0.416600 | 8.1:+78140916 | MS.gene89152:CDS |
| CCTTTGCATATGTGTTGCTT+GGG | 0.421476 | 8.1:+78142149 | MS.gene89152:CDS |
| ACAATTGGTGGTTCGGCCTA+TGG | 0.426657 | 8.1:+78141806 | MS.gene89152:CDS |
| TAGGAAATTCACCAATGCTT+TGG | 0.427064 | 8.1:+78142877 | MS.gene89152:CDS |
| GGCCAACCGGGACAACTGTA+TGG | 0.429543 | 8.1:+78142314 | MS.gene89152:CDS |
| GACAGAACTTGCCAAAAGGC+TGG | 0.431101 | 8.1:-78143224 | None:intergenic |
| TTGATAATTCCTTGTTTCTA+CGG | 0.431625 | 8.1:-78141730 | None:intergenic |
| CATATGCAAAGGACATGAAC+TGG | 0.433132 | 8.1:-78142138 | None:intergenic |
| GTGGAAGATAGAGAGACAAT+TGG | 0.436551 | 8.1:+78141791 | MS.gene89152:CDS |
| CAGTCCGAATTCACTGTAGA+AGG | 0.442631 | 8.1:-78141905 | None:intergenic |
| TATTACCTTATGAAAGAGTC+AGG | 0.444051 | 8.1:-78140921 | None:intergenic |
| TATGCCGAATTTAGCGAAAC+AGG | 0.444685 | 8.1:+78142286 | MS.gene89152:CDS |
| GAAACAGGAATCAGGCCAAC+CGG | 0.444955 | 8.1:+78142301 | MS.gene89152:CDS |
| GCATAATCACCTTCGAAGTA+AGG | 0.446042 | 8.1:-78142432 | None:intergenic |
| GTGTGTCATCTGTGTTGTCT+GGG | 0.457926 | 8.1:+78143259 | MS.gene89152:CDS |
| ACAACCAAATCCTTAAGCCT+TGG | 0.460415 | 8.1:-78142043 | None:intergenic |
| ATGAGCAATGGCAAAATGCT+TGG | 0.468783 | 8.1:+78143195 | MS.gene89152:CDS |
| TTTCATAGGTGCCATTCTAC+CGG | 0.470578 | 8.1:-78142107 | None:intergenic |
| TAGAGAGACAATTGGTGGTT+CGG | 0.471497 | 8.1:+78141799 | MS.gene89152:CDS |
| ACTTCGAAGGTGATTATGCT+TGG | 0.471919 | 8.1:+78142436 | MS.gene89152:CDS |
| AATTTAGCGAAACAGGAATC+AGG | 0.482089 | 8.1:+78142293 | MS.gene89152:CDS |
| CAAAGGGCTGTCTGTTGCAC+TGG | 0.484472 | 8.1:+78141833 | MS.gene89152:CDS |
| AATGAAGAACACGTCTAATA+CGG | 0.487209 | 8.1:-78142563 | None:intergenic |
| GAGAGAAAGAGGTTTCATTG+AGG | 0.491311 | 8.1:-78140890 | None:intergenic |
| TTAAGGATTTGGTTGTAGAA+GGG | 0.493677 | 8.1:+78142050 | MS.gene89152:CDS |
| TTGTAGAAGGGAAAACTGTA+TGG | 0.505105 | 8.1:+78142062 | MS.gene89152:CDS |
| CAACAAAAGCGTTGCCTTTG+GGG | 0.506916 | 8.1:-78140833 | None:intergenic |
| AAACTTGGTGTGTGCAATGA+AGG | 0.512261 | 8.1:+78141866 | MS.gene89152:CDS |
| AACACGTCTAATACGGCAGC+AGG | 0.523540 | 8.1:-78142556 | None:intergenic |
| ACTGGTGATCTGGCAAAACT+TGG | 0.524523 | 8.1:+78141851 | MS.gene89152:CDS |
| TCAAATACAACAGCTTGAAT+CGG | 0.526663 | 8.1:-78141767 | None:intergenic |
| CCTTCGAAGTAAGGCCTCCA+AGG | 0.527461 | 8.1:-78142423 | None:intergenic |
| AAATTCCTTCACTTCCTCCA+TGG | 0.529822 | 8.1:-78140857 | None:intergenic |
| TCAAGCTGTTGTATTTGAAG+TGG | 0.531264 | 8.1:+78141772 | MS.gene89152:CDS |
| ATGAAAGAGTCAGGAATTGA+AGG | 0.531275 | 8.1:-78140912 | None:intergenic |
| AACTGCCCATACAGTTGTCC+CGG | 0.532165 | 8.1:-78142320 | None:intergenic |
| TTAATCGTTTCAATGGGCTA+TGG | 0.532401 | 8.1:+78142385 | MS.gene89152:CDS |
| TGGTTATCTACCCGGTAGAA+TGG | 0.533484 | 8.1:+78142096 | MS.gene89152:CDS |
| GTTGTCCATGGAGGAAGTGA+AGG | 0.536293 | 8.1:+78140852 | MS.gene89152:CDS |
| ACAGAACTTGCCAAAAGGCT+GGG | 0.536502 | 8.1:-78143223 | None:intergenic |
| CACAGCTACTGCCAAAGCAT+TGG | 0.539058 | 8.1:-78142888 | None:intergenic |
| TCGAAGGTGATTATGCTTGG+TGG | 0.544203 | 8.1:+78142439 | MS.gene89152:CDS |
| AGTAGCTGTGGTTGTATCTG+TGG | 0.546402 | 8.1:+78142901 | MS.gene89152:CDS |
| GTAAGACAGAACTTGCCAAA+AGG | 0.547149 | 8.1:-78143228 | None:intergenic |
| CCTTGGAGGCCTTACTTCGA+AGG | 0.548498 | 8.1:+78142423 | MS.gene89152:CDS |
| ATTTCATTCACTGTGATCCA+AGG | 0.552944 | 8.1:+78142026 | MS.gene89152:CDS |
| GTGATCTGAATAGATTTGAT+CGG | 0.555253 | 8.1:-78141980 | None:intergenic |
| CGTTCTCTTAATAGTTCCAA+AGG | 0.556060 | 8.1:-78142344 | None:intergenic |
| CAATGCTTTGGCAGTAGCTG+TGG | 0.556217 | 8.1:+78142889 | MS.gene89152:CDS |
| AAACAGGAATCAGGCCAACC+GGG | 0.556253 | 8.1:+78142302 | MS.gene89152:CDS |
| AACACTCGGCATGTTTGAGA+TGG | 0.559304 | 8.1:+78142246 | MS.gene89152:CDS |
| CTTTGGAACTATTAAGAGAA+CGG | 0.560201 | 8.1:+78142345 | MS.gene89152:CDS |
| GTTCGGCCTATGGAGGTCAA+AGG | 0.561879 | 8.1:+78141816 | MS.gene89152:CDS |
| TTCGGCCTATGGAGGTCAAA+GGG | 0.562746 | 8.1:+78141817 | MS.gene89152:CDS |
| AGTGTTATGCAGTTCTGCAA+TGG | 0.563040 | 8.1:-78142217 | None:intergenic |
| CTGTGGTTGTATCTGTGGGA+TGG | 0.563356 | 8.1:+78142906 | MS.gene89152:CDS |
| GCCCATACAGTTGTCCCGGT+TGG | 0.566907 | 8.1:-78142316 | None:intergenic |
| ACTGTATGGAAGAATCCCTC+TGG | 0.567501 | 8.1:+78142076 | MS.gene89152:CDS |
| GTAGCTGTGGTTGTATCTGT+GGG | 0.568371 | 8.1:+78142902 | MS.gene89152:CDS |
| TTCATAGGTGCCATTCTACC+GGG | 0.571888 | 8.1:-78142106 | None:intergenic |
| AACGCGATGCCGAAAACTTG+AGG | 0.572333 | 8.1:-78141929 | None:intergenic |
| TGCATCTGAAGTGCTTGAGT+TGG | 0.574697 | 8.1:+78142474 | MS.gene89152:CDS |
| GTTGTGAGACCTACCCTTGG+AGG | 0.576450 | 8.1:+78142409 | MS.gene89152:CDS |
| GGTGTTGTGAGACCTACCCT+TGG | 0.582898 | 8.1:+78142406 | MS.gene89152:CDS |
| ATGATATATACAATGAGCAA+TGG | 0.584957 | 8.1:+78143183 | MS.gene89152:CDS |
| ATGCAATGTAACAGGCCAGA+AGG | 0.587442 | 8.1:+78142831 | MS.gene89152:intron |
| GCCAACCGGGACAACTGTAT+GGG | 0.591569 | 8.1:+78142315 | MS.gene89152:CDS |
| TGGTGTGTGCAATGAAGGAC+AGG | 0.592622 | 8.1:+78141871 | MS.gene89152:CDS |
| CTTCTACAGTGAATTCGGAC+TGG | 0.597379 | 8.1:+78141906 | MS.gene89152:CDS |
| GAAGTAAGGCCTCCAAGGGT+AGG | 0.598489 | 8.1:-78142418 | None:intergenic |
| AGTCACATTCCGTAGAAACA+AGG | 0.604075 | 8.1:+78141721 | MS.gene89152:CDS |
| AGAATTGTAAGAACTGTGAG+AGG | 0.606225 | 8.1:-78140747 | None:intergenic |
| CTATTAAGAGAACGGTTGCG+CGG | 0.608444 | 8.1:+78142353 | MS.gene89152:CDS |
| ATTGGTGGTTCGGCCTATGG+AGG | 0.610044 | 8.1:+78141809 | MS.gene89152:CDS |
| GAAGATAGAGAGACAATTGG+TGG | 0.619803 | 8.1:+78141794 | MS.gene89152:CDS |
| AATTATCAAACTTTAGCTCG+TGG | 0.622921 | 8.1:+78141744 | MS.gene89152:CDS |
| AATCCCTCTGGTTATCTACC+CGG | 0.623736 | 8.1:+78142088 | MS.gene89152:CDS |
| CCCAAGCAACACATATGCAA+AGG | 0.627872 | 8.1:-78142149 | None:intergenic |
| AACAAAAGCGTTGCCTTTGG+GGG | 0.633130 | 8.1:-78140832 | None:intergenic |
| CTTCGAAGTAAGGCCTCCAA+GGG | 0.635016 | 8.1:-78142422 | None:intergenic |
| GAATTGTAAGAACTGTGAGA+GGG | 0.646971 | 8.1:-78140746 | None:intergenic |
| AATTGTAAGAACTGTGAGAG+GGG | 0.650924 | 8.1:-78140745 | None:intergenic |
| CACCATCTCAAAATTCAACA+CGG | 0.653546 | 8.1:+78143282 | MS.gene89152:CDS |
| CCGAATTCACTGTAGAAGGA+CGG | 0.663014 | 8.1:-78141901 | None:intergenic |
| GACAGCCCTTTGACCTCCAT+AGG | 0.665364 | 8.1:-78141822 | None:intergenic |
| TGTGGGATGGATATGCTATG+AGG | 0.666058 | 8.1:+78142919 | MS.gene89152:CDS |
| CTTGAGTTGGTAGAACATGT+CGG | 0.689634 | 8.1:+78142487 | MS.gene89152:CDS |
| ATAACACTAGTGATAACACT+CGG | 0.692289 | 8.1:+78142232 | MS.gene89152:CDS |
| CTACCGGGTAGATAACCAGA+GGG | 0.714310 | 8.1:-78142091 | None:intergenic |
| TCTACCGGGTAGATAACCAG+AGG | 0.740575 | 8.1:-78142092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATACTATGAACAAATTAAA+AGG | + | chr8.1:78143049-78143068 | MS.gene89152:intron | 15.0% |
| !! | TGATAAAATTGGATATGTAT+AGG | + | chr8.1:78142858-78142877 | MS.gene89152:CDS | 20.0% |
| !!! | AAATTATGTTGATTGGATTT+TGG | + | chr8.1:78141669-78141688 | MS.gene89152:intron | 20.0% |
| !!! | ATCATTTTAATCGTTTCAAT+GGG | + | chr8.1:78142379-78142398 | MS.gene89152:CDS | 20.0% |
| !!! | TAAGCTATTTCTATAACAAA+AGG | + | chr8.1:78141433-78141452 | MS.gene89152:intron | 20.0% |
| !!! | TCTTTCAATATGTTAGATTT+TGG | + | chr8.1:78142182-78142201 | MS.gene89152:CDS | 20.0% |
| ! | AATAATTCACATTCCTTTCT+GGG | + | chr8.1:78140940-78140959 | MS.gene89152:intron | 25.0% |
| ! | AATTACTTTCTATGCTAACT+AGG | + | chr8.1:78142973-78142992 | MS.gene89152:intron | 25.0% |
| ! | ATGATATATACAATGAGCAA+TGG | + | chr8.1:78143183-78143202 | MS.gene89152:CDS | 25.0% |
| ! | CTGAATACTAAAATGTGAAA+AGG | - | chr8.1:78140993-78141012 | None:intergenic | 25.0% |
| ! | GTTATGGAAATTATGTTGAT+TGG | + | chr8.1:78141662-78141681 | MS.gene89152:intron | 25.0% |
| ! | TAAGCTGTTAAAATCAAACA+AGG | - | chr8.1:78141147-78141166 | None:intergenic | 25.0% |
| ! | TAATAATTCACATTCCTTTC+TGG | + | chr8.1:78140939-78140958 | MS.gene89152:intron | 25.0% |
| ! | TTGATTCAACTATCATAACT+AGG | - | chr8.1:78142999-78143018 | None:intergenic | 25.0% |
| !! | AACTGGAAGAAAATTTTCAT+AGG | - | chr8.1:78142124-78142143 | None:intergenic | 25.0% |
| !! | TCAATATGTTAGATTTTGGA+AGG | + | chr8.1:78142186-78142205 | MS.gene89152:CDS | 25.0% |
| !! | TTGTACATAAAAGCATATCA+TGG | - | chr8.1:78142684-78142703 | None:intergenic | 25.0% |
| !!! | AAATGATTTTTTGAACCTGT+CGG | + | chr8.1:78141085-78141104 | MS.gene89152:intron | 25.0% |
| !!! | GATCATTTTAATCGTTTCAA+TGG | + | chr8.1:78142378-78142397 | MS.gene89152:CDS | 25.0% |
| !!! | TTGATAATTCCTTGTTTCTA+CGG | - | chr8.1:78141733-78141752 | None:intergenic | 25.0% |
| AAATAGCGCTTACTTTGTTA+TGG | + | chr8.1:78141646-78141665 | MS.gene89152:intron | 30.0% | |
| AACAAAGTAAGCGCTATTTA+GGG | - | chr8.1:78141645-78141664 | None:intergenic | 30.0% | |
| AATGAAGAACACGTCTAATA+CGG | - | chr8.1:78142566-78142585 | None:intergenic | 30.0% | |
| AGAAAGGTAAGTACTAGAAA+TGG | - | chr8.1:78143134-78143153 | None:intergenic | 30.0% | |
| AGCTCAAATAAGCCTATTTA+AGG | + | chr8.1:78141341-78141360 | MS.gene89152:intron | 30.0% | |
| ATAACACTAGTGATAACACT+CGG | + | chr8.1:78142232-78142251 | MS.gene89152:CDS | 30.0% | |
| CAGAAGGATGATGATAAAAT+TGG | + | chr8.1:78142847-78142866 | MS.gene89152:CDS | 30.0% | |
| GTGATCTGAATAGATTTGAT+CGG | - | chr8.1:78141983-78142002 | None:intergenic | 30.0% | |
| TAACAAAGTAAGCGCTATTT+AGG | - | chr8.1:78141646-78141665 | None:intergenic | 30.0% | |
| TAACATTCTTGATCTAGTCT+AGG | - | chr8.1:78143083-78143102 | None:intergenic | 30.0% | |
| TAAGTAATTCTCATGCTAAG+TGG | + | chr8.1:78141403-78141422 | MS.gene89152:intron | 30.0% | |
| TATTACCTTATGAAAGAGTC+AGG | - | chr8.1:78140924-78140943 | None:intergenic | 30.0% | |
| TCAAATACAACAGCTTGAAT+CGG | - | chr8.1:78141770-78141789 | None:intergenic | 30.0% | |
| TCAAATATGGCAATACAAAC+AGG | + | chr8.1:78141619-78141638 | MS.gene89152:intron | 30.0% | |
| TCAGTAGTTAAGCTCAAATA+TGG | + | chr8.1:78141606-78141625 | MS.gene89152:intron | 30.0% | |
| TCTATTCAGATCACAAAAAC+TGG | + | chr8.1:78141989-78142008 | MS.gene89152:CDS | 30.0% | |
| ! | AATTATCAAACTTTAGCTCG+TGG | + | chr8.1:78141744-78141763 | MS.gene89152:CDS | 30.0% |
| ! | CAATTTTATCATCATCCTTC+TGG | - | chr8.1:78142849-78142868 | None:intergenic | 30.0% |
| ! | TTAAGGATTTGGTTGTAGAA+GGG | + | chr8.1:78142050-78142069 | MS.gene89152:CDS | 30.0% |
| !! | CTTTGGAACTATTAAGAGAA+CGG | + | chr8.1:78142345-78142364 | MS.gene89152:CDS | 30.0% |
| !! | GTTGTTTTCATAAGCTAACA+TGG | + | chr8.1:78141240-78141259 | MS.gene89152:intron | 30.0% |
| AAAAGAGAAGAAACCCAGAA+AGG | - | chr8.1:78140956-78140975 | None:intergenic | 35.0% | |
| AAGCATTTGTGACACTGTTT+GGG | - | chr8.1:78141583-78141602 | None:intergenic | 35.0% | |
| AATTGTAAGAACTGTGAGAG+GGG | - | chr8.1:78140748-78140767 | None:intergenic | 35.0% | |
| AATTTAGCGAAACAGGAATC+AGG | + | chr8.1:78142293-78142312 | MS.gene89152:CDS | 35.0% | |
| AGAATTGTAAGAACTGTGAG+AGG | - | chr8.1:78140750-78140769 | None:intergenic | 35.0% | |
| AGAGAAAGAGGTTTCATTGA+GGG | - | chr8.1:78140892-78140911 | None:intergenic | 35.0% | |
| ATCCAAACAGAGCCTTAAAT+AGG | - | chr8.1:78141356-78141375 | None:intergenic | 35.0% | |
| ATGAAAGAGTCAGGAATTGA+AGG | - | chr8.1:78140915-78140934 | None:intergenic | 35.0% | |
| ATTTCATTCACTGTGATCCA+AGG | + | chr8.1:78142026-78142045 | MS.gene89152:CDS | 35.0% | |
| CAAGGTTTAGAAACTAAACC+AGG | - | chr8.1:78141129-78141148 | None:intergenic | 35.0% | |
| CAATTCCTGACTCTTTCATA+AGG | + | chr8.1:78140916-78140935 | MS.gene89152:CDS | 35.0% | |
| CACTTCAGATGCAACAAAAA+AGG | - | chr8.1:78142467-78142486 | None:intergenic | 35.0% | |
| CAGCTGAAAGAAAATCAGAA+AGG | - | chr8.1:78143150-78143169 | None:intergenic | 35.0% | |
| CGTTCTCTTAATAGTTCCAA+AGG | - | chr8.1:78142347-78142366 | None:intergenic | 35.0% | |
| GAATGTGACTTTATCAAACC+TGG | - | chr8.1:78141711-78141730 | None:intergenic | 35.0% | |
| GAATTGTAAGAACTGTGAGA+GGG | - | chr8.1:78140749-78140768 | None:intergenic | 35.0% | |
| GATAGTTGAATCAAGCTCAT+TGG | + | chr8.1:78143005-78143024 | MS.gene89152:intron | 35.0% | |
| GATTCCTGTTTCGCTAAATT+CGG | - | chr8.1:78142293-78142312 | None:intergenic | 35.0% | |
| TAAACACTTCCAAGACTGTT+TGG | - | chr8.1:78141309-78141328 | None:intergenic | 35.0% | |
| TAAGCATTTGTGACACTGTT+TGG | - | chr8.1:78141584-78141603 | None:intergenic | 35.0% | |
| TAATCTCTTCCAAACAGTCT+TGG | + | chr8.1:78141297-78141316 | MS.gene89152:intron | 35.0% | |
| TAGACGTGTTCTTCATTCTT+TGG | + | chr8.1:78142569-78142588 | MS.gene89152:CDS | 35.0% | |
| TAGGAAATTCACCAATGCTT+TGG | + | chr8.1:78142877-78142896 | MS.gene89152:CDS | 35.0% | |
| TCAAGCTGTTGTATTTGAAG+TGG | + | chr8.1:78141772-78141791 | MS.gene89152:CDS | 35.0% | |
| TGCAACTTTGAATAAGCTTC+AGG | + | chr8.1:78142609-78142628 | MS.gene89152:CDS | 35.0% | |
| TGGTACAAAAAATGATAGCC+TGG | + | chr8.1:78141108-78141127 | MS.gene89152:intron | 35.0% | |
| TTGTAGAAGGGAAAACTGTA+TGG | + | chr8.1:78142062-78142081 | MS.gene89152:CDS | 35.0% | |
| ! | CTTAAGGATTTGGTTGTAGA+AGG | + | chr8.1:78142049-78142068 | MS.gene89152:CDS | 35.0% |
| ! | GGGAAAAGCAAAACTTTTCT+TGG | + | chr8.1:78142528-78142547 | MS.gene89152:CDS | 35.0% |
| !! | AAGTTTCGCTTTTGTAGTCA+TGG | - | chr8.1:78140809-78140828 | None:intergenic | 35.0% |
| !! | TTAATCGTTTCAATGGGCTA+TGG | + | chr8.1:78142385-78142404 | MS.gene89152:CDS | 35.0% |
| AAATTCCTTCACTTCCTCCA+TGG | - | chr8.1:78140860-78140879 | None:intergenic | 40.0% | |
| ACAACCAAATCCTTAAGCCT+TGG | - | chr8.1:78142046-78142065 | None:intergenic | 40.0% | |
| ACTTCGAAGGTGATTATGCT+TGG | + | chr8.1:78142436-78142455 | MS.gene89152:CDS | 40.0% | |
| AGGAATTGAAGGAGAGAAAG+AGG | - | chr8.1:78140904-78140923 | None:intergenic | 40.0% | |
| AGTCACATTCCGTAGAAACA+AGG | + | chr8.1:78141721-78141740 | MS.gene89152:CDS | 40.0% | |
| AGTGTTATGCAGTTCTGCAA+TGG | - | chr8.1:78142220-78142239 | None:intergenic | 40.0% | |
| ATGAGCAATGGCAAAATGCT+TGG | + | chr8.1:78143195-78143214 | MS.gene89152:CDS | 40.0% | |
| CATATGCAAAGGACATGAAC+TGG | - | chr8.1:78142141-78142160 | None:intergenic | 40.0% | |
| CGGTGCAATAAGTGATCTTT+CGG | + | chr8.1:78142507-78142526 | MS.gene89152:CDS | 40.0% | |
| CTCTGCTTATGCAATGTAAC+AGG | + | chr8.1:78142823-78142842 | MS.gene89152:intron | 40.0% | |
| CTTATTTCCATAAGCTCTCC+TGG | - | chr8.1:78141514-78141533 | None:intergenic | 40.0% | |
| GAAGATAGAGAGACAATTGG+TGG | + | chr8.1:78141794-78141813 | MS.gene89152:CDS | 40.0% | |
| GAATGACTCAATTCACTCTG+TGG | + | chr8.1:78142760-78142779 | MS.gene89152:intron | 40.0% | |
| GAGAGAAAGAGGTTTCATTG+AGG | - | chr8.1:78140893-78140912 | None:intergenic | 40.0% | |
| GCATAATCACCTTCGAAGTA+AGG | - | chr8.1:78142435-78142454 | None:intergenic | 40.0% | |
| GCTTCAGGTATTTATCTGCA+AGG | + | chr8.1:78142624-78142643 | MS.gene89152:intron | 40.0% | |
| GGTGCAATAAGTGATCTTTC+GGG | + | chr8.1:78142508-78142527 | MS.gene89152:CDS | 40.0% | |
| GTAAGACAGAACTTGCCAAA+AGG | - | chr8.1:78143231-78143250 | None:intergenic | 40.0% | |
| GTGGAAGATAGAGAGACAAT+TGG | + | chr8.1:78141791-78141810 | MS.gene89152:CDS | 40.0% | |
| TATGCCGAATTTAGCGAAAC+AGG | + | chr8.1:78142286-78142305 | MS.gene89152:CDS | 40.0% | |
| TGATCCAAGGCTTAAGGATT+TGG | + | chr8.1:78142039-78142058 | MS.gene89152:CDS | 40.0% | |
| ! | AGCCTATTTAAGGCTCTGTT+TGG | + | chr8.1:78141351-78141370 | MS.gene89152:intron | 40.0% |
| ! | GAGTCATTCATCGTTTTACG+TGG | - | chr8.1:78142749-78142768 | None:intergenic | 40.0% |
| ! | GGTGTTGTAATGTGAAAACC+AGG | + | chr8.1:78141690-78141709 | MS.gene89152:intron | 40.0% |
| ! | TAGAGAGACAATTGGTGGTT+CGG | + | chr8.1:78141799-78141818 | MS.gene89152:CDS | 40.0% |
| ! | TCCTTTGCATATGTGTTGCT+TGG | + | chr8.1:78142148-78142167 | MS.gene89152:CDS | 40.0% |
| !! | AAACTTGGTGTGTGCAATGA+AGG | + | chr8.1:78141866-78141885 | MS.gene89152:CDS | 40.0% |
| !! | ACAACAAAAGCGTTGCCTTT+GGG | - | chr8.1:78140837-78140856 | None:intergenic | 40.0% |
| !! | CCTTTGCATATGTGTTGCTT+GGG | + | chr8.1:78142149-78142168 | MS.gene89152:CDS | 40.0% |
| !! | CTTGAGTTGGTAGAACATGT+CGG | + | chr8.1:78142487-78142506 | MS.gene89152:CDS | 40.0% |
| !! | GCATGTTTGAGATGGCTTTT+TGG | + | chr8.1:78142254-78142273 | MS.gene89152:CDS | 40.0% |
| !! | TTCGCTTTTGTAGTCATGGA+CGG | - | chr8.1:78140805-78140824 | None:intergenic | 40.0% |
| !! | TTTCATAGGTGCCATTCTAC+CGG | - | chr8.1:78142110-78142129 | None:intergenic | 40.0% |
| !!! | ATGTGTTGCTTGGGATCTTT+TGG | + | chr8.1:78142158-78142177 | MS.gene89152:CDS | 40.0% |
| !!! | TCATTTTTTGTACCACCGAC+AGG | - | chr8.1:78141103-78141122 | None:intergenic | 40.0% |
| !!! | TGATTTTTTGAACCTGTCGG+TGG | + | chr8.1:78141088-78141107 | MS.gene89152:intron | 40.0% |
| AACACTCGGCATGTTTGAGA+TGG | + | chr8.1:78142246-78142265 | MS.gene89152:CDS | 45.0% | |
| AATCCCTCTGGTTATCTACC+CGG | + | chr8.1:78142088-78142107 | MS.gene89152:CDS | 45.0% | |
| ACAGAACTTGCCAAAAGGCT+GGG | - | chr8.1:78143226-78143245 | None:intergenic | 45.0% | |
| ACTGGTGATCTGGCAAAACT+TGG | + | chr8.1:78141851-78141870 | MS.gene89152:CDS | 45.0% | |
| ACTGTATGGAAGAATCCCTC+TGG | + | chr8.1:78142076-78142095 | MS.gene89152:CDS | 45.0% | |
| ACTGTATGGGCAGTTACCTT+TGG | + | chr8.1:78142328-78142347 | MS.gene89152:CDS | 45.0% | |
| ACTGTCTTCATAAGCTAGCC+AGG | + | chr8.1:78141493-78141512 | MS.gene89152:intron | 45.0% | |
| AGTAGCTGTGGTTGTATCTG+TGG | + | chr8.1:78142901-78142920 | MS.gene89152:CDS | 45.0% | |
| ATGCAATGTAACAGGCCAGA+AGG | + | chr8.1:78142831-78142850 | MS.gene89152:intron | 45.0% | |
| CAGTCCGAATTCACTGTAGA+AGG | - | chr8.1:78141908-78141927 | None:intergenic | 45.0% | |
| CCCAAGCAACACATATGCAA+AGG | - | chr8.1:78142152-78142171 | None:intergenic | 45.0% | |
| CCGAATTCACTGTAGAAGGA+CGG | - | chr8.1:78141904-78141923 | None:intergenic | 45.0% | |
| CCGTCCTTCTACAGTGAATT+CGG | + | chr8.1:78141901-78141920 | MS.gene89152:CDS | 45.0% | |
| CTATTAAGAGAACGGTTGCG+CGG | + | chr8.1:78142353-78142372 | MS.gene89152:CDS | 45.0% | |
| CTTCTACAGTGAATTCGGAC+TGG | + | chr8.1:78141906-78141925 | MS.gene89152:CDS | 45.0% | |
| GTAGCTGTGGTTGTATCTGT+GGG | + | chr8.1:78142902-78142921 | MS.gene89152:CDS | 45.0% | |
| GTGTGTCATCTGTGTTGTCT+GGG | + | chr8.1:78143259-78143278 | MS.gene89152:CDS | 45.0% | |
| TCACTGTGATCCAAGGCTTA+AGG | + | chr8.1:78142033-78142052 | MS.gene89152:CDS | 45.0% | |
| TCGAAGGTGATTATGCTTGG+TGG | + | chr8.1:78142439-78142458 | MS.gene89152:CDS | 45.0% | |
| TGGTTATCTACCCGGTAGAA+TGG | + | chr8.1:78142096-78142115 | MS.gene89152:CDS | 45.0% | |
| TGTGGGATGGATATGCTATG+AGG | + | chr8.1:78142919-78142938 | MS.gene89152:CDS | 45.0% | |
| TGTGTGTCATCTGTGTTGTC+TGG | + | chr8.1:78143258-78143277 | MS.gene89152:CDS | 45.0% | |
| ! | TGCATCTGAAGTGCTTGAGT+TGG | + | chr8.1:78142474-78142493 | MS.gene89152:CDS | 45.0% |
| !! | AACAAAAGCGTTGCCTTTGG+GGG | - | chr8.1:78140835-78140854 | None:intergenic | 45.0% |
| !! | AACGCTTTTGTTGTCCATGG+AGG | + | chr8.1:78140843-78140862 | MS.gene89152:CDS | 45.0% |
| !! | CAACAAAAGCGTTGCCTTTG+GGG | - | chr8.1:78140836-78140855 | None:intergenic | 45.0% |
| !! | GACAACAAAAGCGTTGCCTT+TGG | - | chr8.1:78140838-78140857 | None:intergenic | 45.0% |
| !! | TTCATAGGTGCCATTCTACC+GGG | - | chr8.1:78142109-78142128 | None:intergenic | 45.0% |
| AAACAGGAATCAGGCCAACC+GGG | + | chr8.1:78142302-78142321 | MS.gene89152:CDS | 50.0% | |
| AACACGTCTAATACGGCAGC+AGG | - | chr8.1:78142559-78142578 | None:intergenic | 50.0% | |
| AACGCGATGCCGAAAACTTG+AGG | - | chr8.1:78141932-78141951 | None:intergenic | 50.0% | |
| AACTGCCCATACAGTTGTCC+CGG | - | chr8.1:78142323-78142342 | None:intergenic | 50.0% | |
| AAGCTAGCCAGGAGAGCTTA+TGG | + | chr8.1:78141504-78141523 | MS.gene89152:intron | 50.0% | |
| AGCGAAACTTTCTCCCCCAA+AGG | + | chr8.1:78140819-78140838 | MS.gene89152:CDS | 50.0% | |
| CAATGCTTTGGCAGTAGCTG+TGG | + | chr8.1:78142889-78142908 | MS.gene89152:CDS | 50.0% | |
| CACAGCTACTGCCAAAGCAT+TGG | - | chr8.1:78142891-78142910 | None:intergenic | 50.0% | |
| CTACCGGGTAGATAACCAGA+GGG | - | chr8.1:78142094-78142113 | None:intergenic | 50.0% | |
| CTGTGGTTGTATCTGTGGGA+TGG | + | chr8.1:78142906-78142925 | MS.gene89152:CDS | 50.0% | |
| CTTCGAAGTAAGGCCTCCAA+GGG | - | chr8.1:78142425-78142444 | None:intergenic | 50.0% | |
| GAAACAGGAATCAGGCCAAC+CGG | + | chr8.1:78142301-78142320 | MS.gene89152:CDS | 50.0% | |
| GACAGAACTTGCCAAAAGGC+TGG | - | chr8.1:78143227-78143246 | None:intergenic | 50.0% | |
| GTTGTCCATGGAGGAAGTGA+AGG | + | chr8.1:78140852-78140871 | MS.gene89152:CDS | 50.0% | |
| TCTACCGGGTAGATAACCAG+AGG | - | chr8.1:78142095-78142114 | None:intergenic | 50.0% | |
| TGGTGTGTGCAATGAAGGAC+AGG | + | chr8.1:78141871-78141890 | MS.gene89152:CDS | 50.0% | |
| TTCGGCCTATGGAGGTCAAA+GGG | + | chr8.1:78141817-78141836 | MS.gene89152:CDS | 50.0% | |
| ! | ACAATTGGTGGTTCGGCCTA+TGG | + | chr8.1:78141806-78141825 | MS.gene89152:CDS | 50.0% |
| ! | CTTGGATCATCCCAGCCTTT+TGG | + | chr8.1:78143213-78143232 | MS.gene89152:CDS | 50.0% |
| ! | TGTCTGTTGCACTGGTGATC+TGG | + | chr8.1:78141841-78141860 | MS.gene89152:CDS | 50.0% |
| !! | GGCAACGCTTTTGTTGTCCA+TGG | + | chr8.1:78140840-78140859 | MS.gene89152:CDS | 50.0% |
| !!! | TCGGACTGGCCTCAAGTTTT+CGG | + | chr8.1:78141920-78141939 | MS.gene89152:CDS | 50.0% |
| CAAAGGGCTGTCTGTTGCAC+TGG | + | chr8.1:78141833-78141852 | MS.gene89152:CDS | 55.0% | |
| CCTTCGAAGTAAGGCCTCCA+AGG | - | chr8.1:78142426-78142445 | None:intergenic | 55.0% | |
| CCTTGGAGGCCTTACTTCGA+AGG | + | chr8.1:78142423-78142442 | MS.gene89152:CDS | 55.0% | |
| GAAGTAAGGCCTCCAAGGGT+AGG | - | chr8.1:78142421-78142440 | None:intergenic | 55.0% | |
| GACAGCCCTTTGACCTCCAT+AGG | - | chr8.1:78141825-78141844 | None:intergenic | 55.0% | |
| GCCAACCGGGACAACTGTAT+GGG | + | chr8.1:78142315-78142334 | MS.gene89152:CDS | 55.0% | |
| GTTCGGCCTATGGAGGTCAA+AGG | + | chr8.1:78141816-78141835 | MS.gene89152:CDS | 55.0% | |
| GTTGTGAGACCTACCCTTGG+AGG | + | chr8.1:78142409-78142428 | MS.gene89152:CDS | 55.0% | |
| ! | ATTGGTGGTTCGGCCTATGG+AGG | + | chr8.1:78141809-78141828 | MS.gene89152:CDS | 55.0% |
| ! | GGTGTTGTGAGACCTACCCT+TGG | + | chr8.1:78142406-78142425 | MS.gene89152:CDS | 55.0% |
| GCCCATACAGTTGTCCCGGT+TGG | - | chr8.1:78142319-78142338 | None:intergenic | 60.0% | |
| GGCCAACCGGGACAACTGTA+TGG | + | chr8.1:78142314-78142333 | MS.gene89152:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78140741 | 78143303 | 78140741 | ID=MS.gene89152 |
| chr8.1 | mRNA | 78140741 | 78143303 | 78140741 | ID=MS.gene89152.t1;Parent=MS.gene89152 |
| chr8.1 | exon | 78140741 | 78140937 | 78140741 | ID=MS.gene89152.t1.exon1;Parent=MS.gene89152.t1 |
| chr8.1 | CDS | 78140741 | 78140937 | 78140741 | ID=cds.MS.gene89152.t1;Parent=MS.gene89152.t1 |
| chr8.1 | exon | 78141712 | 78142630 | 78141712 | ID=MS.gene89152.t1.exon2;Parent=MS.gene89152.t1 |
| chr8.1 | CDS | 78141712 | 78142630 | 78141712 | ID=cds.MS.gene89152.t1;Parent=MS.gene89152.t1 |
| chr8.1 | exon | 78142845 | 78142940 | 78142845 | ID=MS.gene89152.t1.exon3;Parent=MS.gene89152.t1 |
| chr8.1 | CDS | 78142845 | 78142940 | 78142845 | ID=cds.MS.gene89152.t1;Parent=MS.gene89152.t1 |
| chr8.1 | exon | 78143167 | 78143303 | 78143167 | ID=MS.gene89152.t1.exon4;Parent=MS.gene89152.t1 |
| chr8.1 | CDS | 78143167 | 78143303 | 78143167 | ID=cds.MS.gene89152.t1;Parent=MS.gene89152.t1 |
| Gene Sequence |
| Protein sequence |
