Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89156.t1 | XP_013444474.1 | 95.3 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.40E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89156.t1 | Q9C9E3 | 34.1 | 220 | 115 | 5 | 15 | 212 | 3 | 214 | 1.2e-17 | 91.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89156.t1 | I3T425 | 95.3 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.0e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89156.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057422 | MS.gene89156 | 0.808045 | 3.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89156.t1 | MTR_8g021380 | 95.319 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.83e-166 | 459 |
| MS.gene89156.t1 | MTR_8g021380 | 78.838 | 241 | 10 | 1 | 1 | 200 | 1 | 241 | 1.95e-130 | 369 |
| MS.gene89156.t1 | MTR_2g042900 | 32.900 | 231 | 118 | 7 | 11 | 210 | 12 | 236 | 1.39e-22 | 92.8 |
| MS.gene89156.t1 | MTR_2g042900 | 28.685 | 251 | 112 | 7 | 11 | 200 | 12 | 256 | 2.46e-14 | 70.5 |
| MS.gene89156.t1 | MTR_5g013530 | 33.071 | 127 | 70 | 4 | 85 | 208 | 24 | 138 | 4.76e-14 | 68.2 |
| MS.gene89156.t1 | MTR_5g013530 | 33.884 | 121 | 65 | 4 | 91 | 208 | 8 | 116 | 8.49e-14 | 67.0 |
| MS.gene89156.t1 | MTR_5g013520 | 32.258 | 124 | 63 | 3 | 91 | 208 | 1 | 109 | 1.18e-12 | 63.9 |
| MS.gene89156.t1 | MTR_5g013515 | 31.034 | 116 | 77 | 1 | 93 | 208 | 2 | 114 | 3.08e-12 | 62.4 |
| MS.gene89156.t1 | MTR_4g124960 | 30.693 | 202 | 100 | 7 | 11 | 208 | 12 | 177 | 3.95e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89156.t1 | AT1G72450 | 35.000 | 220 | 113 | 7 | 15 | 212 | 3 | 214 | 6.03e-24 | 97.1 |
| MS.gene89156.t1 | AT1G19180 | 33.036 | 224 | 115 | 8 | 12 | 209 | 14 | 228 | 5.57e-19 | 83.2 |
| MS.gene89156.t1 | AT1G19180 | 33.036 | 224 | 115 | 8 | 12 | 209 | 14 | 228 | 5.57e-19 | 83.2 |
| MS.gene89156.t1 | AT1G17380 | 33.180 | 217 | 110 | 8 | 17 | 212 | 11 | 213 | 1.00e-18 | 82.8 |
| MS.gene89156.t1 | AT1G72450 | 33.173 | 208 | 109 | 6 | 15 | 200 | 3 | 202 | 7.60e-18 | 79.3 |
| MS.gene89156.t1 | AT1G74950 | 29.600 | 250 | 142 | 9 | 1 | 223 | 1 | 243 | 1.98e-16 | 76.3 |
| MS.gene89156.t1 | AT1G19180 | 36.207 | 116 | 70 | 3 | 96 | 209 | 49 | 162 | 2.67e-13 | 66.6 |
| MS.gene89156.t1 | AT1G17380 | 34.194 | 155 | 77 | 5 | 99 | 230 | 63 | 215 | 5.91e-13 | 66.6 |
| MS.gene89156.t1 | AT1G17380 | 31.220 | 205 | 109 | 7 | 16 | 202 | 10 | 200 | 5.93e-13 | 66.2 |
| MS.gene89156.t1 | AT1G74950 | 28.634 | 227 | 129 | 8 | 1 | 200 | 1 | 221 | 4.80e-11 | 60.8 |
Find 49 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTTTCTTTGGGAAAA+TGG | 0.109042 | 8.1:-78012250 | MS.gene89156:CDS |
| TTGAAGGAAAAGAGAATTTC+TGG | 0.175716 | 8.1:-78012282 | MS.gene89156:CDS |
| GATTCTACACCTGCTTTCTT+TGG | 0.212849 | 8.1:-78012258 | MS.gene89156:CDS |
| TTAAGAAGTGAAGCTCTTCT+TGG | 0.236604 | 8.1:+78010382 | None:intergenic |
| CAATTGACGATATTCTATTC+TGG | 0.252458 | 8.1:-78010748 | MS.gene89156:CDS |
| GTGTTTGTTTGAGGAATTTC+GGG | 0.278263 | 8.1:+78010586 | None:intergenic |
| AACTAATTTACCTGAACATT+TGG | 0.278582 | 8.1:+78010531 | None:intergenic |
| GAACTTCTCCGGTGCCTTAC+CGG | 0.289709 | 8.1:+78012341 | None:intergenic |
| TCCTTGTTCGATTGTTTCTA+AGG | 0.291189 | 8.1:+78010561 | None:intergenic |
| AGTGTTTGTTTGAGGAATTT+CGG | 0.311669 | 8.1:+78010585 | None:intergenic |
| AGAGGACCTTATCAAATTAA+TGG | 0.313978 | 8.1:-78010217 | MS.gene89156:CDS |
| TGATCGGAAGAATTATCTTT+AGG | 0.316360 | 8.1:+78010160 | None:intergenic |
| ATTCTACACCTGCTTTCTTT+GGG | 0.379166 | 8.1:-78012257 | MS.gene89156:CDS |
| GGAAACCAAGCCAAATGTTC+AGG | 0.389691 | 8.1:-78010541 | MS.gene89156:intron |
| TTGTGACCATTAATTTGATA+AGG | 0.394801 | 8.1:+78010211 | None:intergenic |
| CACTAGTGACCGGTGCACTT+GGG | 0.400373 | 8.1:+78010623 | None:intergenic |
| AATTGACGATATTCTATTCT+GGG | 0.405626 | 8.1:-78010747 | MS.gene89156:CDS |
| TCACTAGTGACCGGTGCACT+TGG | 0.422956 | 8.1:+78010622 | None:intergenic |
| AACTAAATCACTATAAGTTA+AGG | 0.443726 | 8.1:+78010131 | None:intergenic |
| GTGCCTTACCGGTGAGTCTC+CGG | 0.457733 | 8.1:+78012352 | None:intergenic |
| TGTGAAAATTTGAACTTCTC+CGG | 0.466884 | 8.1:+78012330 | None:intergenic |
| TCTAAGGCAGTGTTTGTTTG+AGG | 0.469946 | 8.1:+78010577 | None:intergenic |
| TTTGGGAAAATGGAACCTAA+AGG | 0.472484 | 8.1:-78012240 | MS.gene89156:intron |
| ACTAGTGACCGGTGCACTTG+GGG | 0.487227 | 8.1:+78010624 | None:intergenic |
| TACGAATGCAACTGAGATCA+TGG | 0.488655 | 8.1:-78010695 | MS.gene89156:CDS |
| CTAATACTGTGTCGGATGGC+CGG | 0.499466 | 8.1:-78012371 | MS.gene89156:CDS |
| CCAACATGCAAAACTCAGAT+GGG | 0.513652 | 8.1:-78011910 | MS.gene89156:CDS |
| ATTTACCTGAACATTTGGCT+TGG | 0.519424 | 8.1:+78010536 | None:intergenic |
| GTATTAGACTTCTTAATGCA+AGG | 0.531343 | 8.1:+78011833 | None:intergenic |
| TGAATCTCTTCCTCAGCTTG+TGG | 0.531942 | 8.1:-78011861 | MS.gene89156:CDS |
| GCCAACATGCAAAACTCAGA+TGG | 0.537855 | 8.1:-78011911 | MS.gene89156:CDS |
| TCGGATGGCCGGAGACTCAC+CGG | 0.544946 | 8.1:-78012360 | MS.gene89156:CDS |
| CTAGTGACCGGTGCACTTGG+GGG | 0.549856 | 8.1:+78010625 | None:intergenic |
| TGCAACTGAGATCATGGAGT+TGG | 0.557096 | 8.1:-78010689 | MS.gene89156:CDS |
| TAAGTTAAGGTCGAATTGAT+CGG | 0.557387 | 8.1:+78010144 | None:intergenic |
| GAGACTCACCGGTAAGGCAC+CGG | 0.568974 | 8.1:-78012349 | MS.gene89156:CDS |
| TAGTGACCGGTGCACTTGGG+GGG | 0.574627 | 8.1:+78010626 | None:intergenic |
| TGGCCGGAGACTCACCGGTA+AGG | 0.579025 | 8.1:-78012355 | MS.gene89156:CDS |
| TTCTTGAGAAAAGAAAAGAA+AGG | 0.582036 | 8.1:-78010357 | MS.gene89156:intron |
| GAATAGAATATCGTCAATTG+TGG | 0.583205 | 8.1:+78010751 | None:intergenic |
| AAATTTAGCTAATACTGTGT+CGG | 0.588601 | 8.1:-78012379 | MS.gene89156:CDS |
| ATGATCTCAGTTGCATTCGT+AGG | 0.602248 | 8.1:+78010697 | None:intergenic |
| TGTTGCAGGGTCATTGCTAG+AGG | 0.603165 | 8.1:-78010235 | MS.gene89156:intron |
| TTAGCTAATACTGTGTCGGA+TGG | 0.619524 | 8.1:-78012375 | MS.gene89156:CDS |
| CAACATGCAAAACTCAGATG+GGG | 0.638179 | 8.1:-78011909 | MS.gene89156:CDS |
| GCATTAAGAAGTCTAATACA+AGG | 0.639363 | 8.1:-78011829 | MS.gene89156:intron |
| GCCTTAGAAACAATCGAACA+AGG | 0.645101 | 8.1:-78010562 | MS.gene89156:CDS |
| AACATGCAAAACTCAGATGG+GGG | 0.692839 | 8.1:-78011908 | MS.gene89156:CDS |
| TTAGCCTCTGAAAATCCAAG+CGG | 0.722831 | 8.1:-78010658 | MS.gene89156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAATTAAATT+AGG | + | chr8.1:78010428-78010447 | None:intergenic | 0.0% |
| !!! | ATTATTATTTTGTTACAAAA+TGG | - | chr8.1:78010439-78010458 | MS.gene89156:intron | 10.0% |
| !! | AAATATATATTGTAAGAGTT+TGG | - | chr8.1:78011693-78011712 | MS.gene89156:intron | 15.0% |
| !! | TCAATATTGTAAGAAATATT+CGG | - | chr8.1:78011632-78011651 | MS.gene89156:intron | 15.0% |
| !!! | ATATTGGTTAGAATAATAAT+TGG | - | chr8.1:78011322-78011341 | MS.gene89156:intron | 15.0% |
| !!! | TGTAAATTAATTTTATTGTG+AGG | + | chr8.1:78011577-78011596 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTATTTCTTACT+TGG | - | chr8.1:78010333-78010352 | MS.gene89156:intron | 15.0% |
| !!! | TTTAGAGTATCATTTTATTT+TGG | + | chr8.1:78011601-78011620 | None:intergenic | 15.0% |
| !!! | TTTAGTATTGGAAAATTATT+GGG | - | chr8.1:78010471-78010490 | MS.gene89156:intron | 15.0% |
| !! | AAGGAAATAAAATAAACAGA+CGG | + | chr8.1:78012220-78012239 | None:intergenic | 20.0% |
| !! | TAGATCTATTTATAACAAAG+TGG | - | chr8.1:78010940-78010959 | MS.gene89156:intron | 20.0% |
| !!! | AATGTTTTTCCATGTAAATT+AGG | - | chr8.1:78010831-78010850 | MS.gene89156:intron | 20.0% |
| !!! | ATTTACATGGAAAAACATTT+TGG | + | chr8.1:78010830-78010849 | None:intergenic | 20.0% |
| !!! | GTTTAGTATTGGAAAATTAT+TGG | - | chr8.1:78010470-78010489 | MS.gene89156:intron | 20.0% |
| !!! | TAAATAAGTGTAGATTTGTT+TGG | - | chr8.1:78011251-78011270 | MS.gene89156:intron | 20.0% |
| ! | AAATTTAGCTAATACTGTGT+CGG | - | chr8.1:78010146-78010165 | MS.gene89156:CDS | 25.0% |
| ! | AACCAAACAATTAATTGACA+AGG | + | chr8.1:78010393-78010412 | None:intergenic | 25.0% |
| ! | AACTAATTTACCTGAACATT+TGG | + | chr8.1:78011997-78012016 | None:intergenic | 25.0% |
| ! | AAGAGAAAGATTATACCTTT+AGG | + | chr8.1:78010303-78010322 | None:intergenic | 25.0% |
| ! | AATTAATGGTCACAAAAATG+AGG | - | chr8.1:78012322-78012341 | MS.gene89156:CDS | 25.0% |
| ! | AATTGACGATATTCTATTCT+GGG | - | chr8.1:78011778-78011797 | MS.gene89156:intron | 25.0% |
| ! | ATCTTGATTAAAACAATCGT+CGG | - | chr8.1:78011021-78011040 | MS.gene89156:intron | 25.0% |
| ! | ATTAATGGTCACAAAAATGA+GGG | - | chr8.1:78012323-78012342 | MS.gene89156:CDS | 25.0% |
| ! | CAAAAATAGACAACATACAA+AGG | + | chr8.1:78012239-78012258 | None:intergenic | 25.0% |
| ! | CAAGATTCAATTAATTAGCA+TGG | + | chr8.1:78012267-78012286 | None:intergenic | 25.0% |
| ! | TATTGTAAGAAATATTCGGT+AGG | - | chr8.1:78011636-78011655 | MS.gene89156:intron | 25.0% |
| ! | TTCTTGAGAAAAGAAAAGAA+AGG | - | chr8.1:78012168-78012187 | MS.gene89156:intron | 25.0% |
| ! | TTGTTACAAAATGGATGATT+TGG | - | chr8.1:78010448-78010467 | MS.gene89156:intron | 25.0% |
| !! | AGATTTGTTTGATTGAAAAG+AGG | - | chr8.1:78011424-78011443 | MS.gene89156:intron | 25.0% |
| !! | AGGTTGAAGTATTAATGATA+TGG | + | chr8.1:78011477-78011496 | None:intergenic | 25.0% |
| !! | ATAATCTTTCTCTTGTTTCA+TGG | - | chr8.1:78010309-78010328 | MS.gene89156:intron | 25.0% |
| !! | ATGTAAATTAGGTTAGTCAT+GGG | - | chr8.1:78010842-78010861 | MS.gene89156:intron | 25.0% |
| !! | CGGAAATAGAAATTTTTAAC+TGG | + | chr8.1:78012200-78012219 | None:intergenic | 25.0% |
| !! | TACATGTTAGTGATCAATTT+TGG | + | chr8.1:78011506-78011525 | None:intergenic | 25.0% |
| !! | TTGTGACCATTAATTTGATA+AGG | + | chr8.1:78012317-78012336 | None:intergenic | 25.0% |
| !!! | AATCTTTCATTTTGATCTTG+TGG | + | chr8.1:78011409-78011428 | None:intergenic | 25.0% |
| !!! | GATACAATTCAGTTTTGAAA+AGG | - | chr8.1:78010877-78010896 | MS.gene89156:intron | 25.0% |
| !!! | TGTATGTTGTCTATTTTTGT+TGG | - | chr8.1:78012240-78012259 | MS.gene89156:intron | 25.0% |
| !!! | TTTAATTTTTCACTAGTGAC+CGG | + | chr8.1:78011915-78011934 | None:intergenic | 25.0% |
| AGAGGACCTTATCAAATTAA+TGG | - | chr8.1:78012308-78012327 | MS.gene89156:CDS | 30.0% | |
| AGTGTTTGTTTGAGGAATTT+CGG | + | chr8.1:78011943-78011962 | None:intergenic | 30.0% | |
| ATTGAATCTTGAATTGTTGC+AGG | - | chr8.1:78012276-78012295 | MS.gene89156:CDS | 30.0% | |
| CAATTGACGATATTCTATTC+TGG | - | chr8.1:78011777-78011796 | MS.gene89156:intron | 30.0% | |
| CATGACTAACCTAATTTACA+TGG | + | chr8.1:78010843-78010862 | None:intergenic | 30.0% | |
| CTAACATGTATGTACGAAAA+AGG | - | chr8.1:78011516-78011535 | MS.gene89156:intron | 30.0% | |
| GAATAGAATATCGTCAATTG+TGG | + | chr8.1:78011777-78011796 | None:intergenic | 30.0% | |
| GAGAAAAGAAAAGAAAGGTA+TGG | - | chr8.1:78012173-78012192 | MS.gene89156:intron | 30.0% | |
| GCATTAAGAAGTCTAATACA+AGG | - | chr8.1:78010696-78010715 | MS.gene89156:CDS | 30.0% | |
| GGTCACTAGTGAAAAATTAA+AGG | - | chr8.1:78011914-78011933 | MS.gene89156:CDS | 30.0% | |
| GTATTAGACTTCTTAATGCA+AGG | + | chr8.1:78010695-78010714 | None:intergenic | 30.0% | |
| TAAGTTAAGGTCGAATTGAT+CGG | + | chr8.1:78012384-78012403 | None:intergenic | 30.0% | |
| TAGCAAAAGTCGAATTGTTT+GGG | - | chr8.1:78011123-78011142 | MS.gene89156:intron | 30.0% | |
| TGATCGGAAGAATTATCTTT+AGG | + | chr8.1:78012368-78012387 | None:intergenic | 30.0% | |
| TGCCTTGTCAATTAATTGTT+TGG | - | chr8.1:78010388-78010407 | MS.gene89156:CDS | 30.0% | |
| TGTGAAAATTTGAACTTCTC+CGG | + | chr8.1:78010198-78010217 | None:intergenic | 30.0% | |
| TTAGCAAAAGTCGAATTGTT+TGG | - | chr8.1:78011122-78011141 | MS.gene89156:intron | 30.0% | |
| TTGAAGGAAAAGAGAATTTC+TGG | - | chr8.1:78010243-78010262 | MS.gene89156:intron | 30.0% | |
| TTGAATCTTGAATTGTTGCA+GGG | - | chr8.1:78012277-78012296 | MS.gene89156:CDS | 30.0% | |
| TTGCATGCTTTGTAATGTTT+CGG | + | chr8.1:78012067-78012086 | None:intergenic | 30.0% | |
| ! | AACAGATCTAGACTTCTTTT+TGG | + | chr8.1:78011089-78011108 | None:intergenic | 30.0% |
| ! | AGGTATTGTTGTGTTAAGTT+TGG | - | chr8.1:78011536-78011555 | MS.gene89156:intron | 30.0% |
| ! | ATTTTGCTGATCGTGTTTTT+TGG | - | chr8.1:78010555-78010574 | MS.gene89156:CDS | 30.0% |
| ! | CATGTAAATTAGGTTAGTCA+TGG | - | chr8.1:78010841-78010860 | MS.gene89156:intron | 30.0% |
| !! | GATTTTTCTAGCAAGTACAA+AGG | - | chr8.1:78010583-78010602 | MS.gene89156:CDS | 30.0% |
| !! | GTTTTGATCTTCTAGTCTAA+GGG | + | chr8.1:78011229-78011248 | None:intergenic | 30.0% |
| !! | TGGAAAAACATTTTGGTAGT+AGG | + | chr8.1:78010823-78010842 | None:intergenic | 30.0% |
| !! | TGGATGATTTGGTTTAGTAT+TGG | - | chr8.1:78010459-78010478 | MS.gene89156:intron | 30.0% |
| !! | TGTTAGTGATCAATTTTGGT+TGG | + | chr8.1:78011502-78011521 | None:intergenic | 30.0% |
| !!! | GTTAGTGATCAATTTTGGTT+GGG | + | chr8.1:78011501-78011520 | None:intergenic | 30.0% |
| AAAAATGAGGGTAGTAGTTC+TGG | - | chr8.1:78012335-78012354 | MS.gene89156:CDS | 35.0% | |
| ATTCTACACCTGCTTTCTTT+GGG | - | chr8.1:78010268-78010287 | MS.gene89156:intron | 35.0% | |
| ATTTACCTGAACATTTGGCT+TGG | + | chr8.1:78011992-78012011 | None:intergenic | 35.0% | |
| CTTCTAGTCTAAGGGAAATT+GGG | + | chr8.1:78011221-78011240 | None:intergenic | 35.0% | |
| GTAGTACTCGAGTTCAATAT+TGG | - | chr8.1:78011306-78011325 | MS.gene89156:intron | 35.0% | |
| GTGTTTGTTTGAGGAATTTC+GGG | + | chr8.1:78011942-78011961 | None:intergenic | 35.0% | |
| TAAAATCGTGAATCAGTGAG+AGG | - | chr8.1:78011056-78011075 | MS.gene89156:intron | 35.0% | |
| TCTAGACATCTAATGACAAG+TGG | + | chr8.1:78010924-78010943 | None:intergenic | 35.0% | |
| TCTTCTAGTCTAAGGGAAAT+TGG | + | chr8.1:78011222-78011241 | None:intergenic | 35.0% | |
| TTAAGAAGTGAAGCTCTTCT+TGG | + | chr8.1:78012146-78012165 | None:intergenic | 35.0% | |
| TTAGCTAAGGCCTAATTGTT+CGG | - | chr8.1:78011283-78011302 | MS.gene89156:intron | 35.0% | |
| TTATAACAAAGTGGCGCAAT+TGG | - | chr8.1:78010949-78010968 | MS.gene89156:intron | 35.0% | |
| TTTATTGTGAGGTTGAGATC+TGG | + | chr8.1:78011566-78011585 | None:intergenic | 35.0% | |
| TTTGGGAAAATGGAACCTAA+AGG | - | chr8.1:78010285-78010304 | MS.gene89156:intron | 35.0% | |
| ! | ATCGTCAATTGTGGAGTTTT+AGG | + | chr8.1:78011768-78011787 | None:intergenic | 35.0% |
| ! | ATTTTCAGAGGCTAATTTGG+TGG | + | chr8.1:78011862-78011881 | None:intergenic | 35.0% |
| ! | TAGCTTAGGTCGAAATGTTT+TGG | - | chr8.1:78010983-78011002 | MS.gene89156:intron | 35.0% |
| ! | TGGATTTTCAGAGGCTAATT+TGG | + | chr8.1:78011865-78011884 | None:intergenic | 35.0% |
| !! | CGTTTTGATCTTCTAGTCTA+AGG | + | chr8.1:78011230-78011249 | None:intergenic | 35.0% |
| !! | TCCTTGTTCGATTGTTTCTA+AGG | + | chr8.1:78011967-78011986 | None:intergenic | 35.0% |
| !! | TCTTTTGAGTCAGTTCTTGA+AGG | - | chr8.1:78010227-78010246 | MS.gene89156:CDS | 35.0% |
| AACATGCAAAACTCAGATGG+GGG | - | chr8.1:78010617-78010636 | MS.gene89156:CDS | 40.0% | |
| AGACATCTAATGACAAGTGG+TGG | + | chr8.1:78010921-78010940 | None:intergenic | 40.0% | |
| AGTCTAAGGGAAATTGGGTT+CGG | + | chr8.1:78011216-78011235 | None:intergenic | 40.0% | |
| ATGATCTCAGTTGCATTCGT+AGG | + | chr8.1:78011831-78011850 | None:intergenic | 40.0% | |
| CAACATGCAAAACTCAGATG+GGG | - | chr8.1:78010616-78010635 | MS.gene89156:CDS | 40.0% | |
| CCAACATGCAAAACTCAGAT+GGG | - | chr8.1:78010615-78010634 | MS.gene89156:CDS | 40.0% | |
| GAACAATTAGGCCTTAGCTA+AGG | + | chr8.1:78011284-78011303 | None:intergenic | 40.0% | |
| GATTCTACACCTGCTTTCTT+TGG | - | chr8.1:78010267-78010286 | MS.gene89156:intron | 40.0% | |
| GCCTTAGAAACAATCGAACA+AGG | - | chr8.1:78011963-78011982 | MS.gene89156:intron | 40.0% | |
| GTAGTACTTGAGTTCGATCT+TGG | - | chr8.1:78011145-78011164 | MS.gene89156:intron | 40.0% | |
| TACGAATGCAACTGAGATCA+TGG | - | chr8.1:78011830-78011849 | MS.gene89156:CDS | 40.0% | |
| TACTTGAGTTCGATCTTGGT+TGG | - | chr8.1:78011149-78011168 | MS.gene89156:intron | 40.0% | |
| TAGCTAAGGCCTAATTGTTC+GGG | - | chr8.1:78011284-78011303 | MS.gene89156:intron | 40.0% | |
| TTAGCTAATACTGTGTCGGA+TGG | - | chr8.1:78010150-78010169 | MS.gene89156:CDS | 40.0% | |
| ! | AAATTAGGTTAGTCATGGGC+TGG | - | chr8.1:78010846-78010865 | MS.gene89156:intron | 40.0% |
| ! | ACCTGCTTTCTTTGGGAAAA+TGG | - | chr8.1:78010275-78010294 | MS.gene89156:intron | 40.0% |
| ! | TCCATTTTCCCAAAGAAAGC+AGG | + | chr8.1:78010279-78010298 | None:intergenic | 40.0% |
| ! | TCTAAGGCAGTGTTTGTTTG+AGG | + | chr8.1:78011951-78011970 | None:intergenic | 40.0% |
| ! | TTAGCCTCTGAAAATCCAAG+CGG | - | chr8.1:78011867-78011886 | MS.gene89156:CDS | 40.0% |
| !!! | CTGATCGTGTTTTTTGGTTG+TGG | - | chr8.1:78010561-78010580 | MS.gene89156:CDS | 40.0% |
| !!! | GTGATCAATTTTGGTTGGGA+AGG | + | chr8.1:78011497-78011516 | None:intergenic | 40.0% |
| CGAGTACTACCCGAACAATT+AGG | + | chr8.1:78011296-78011315 | None:intergenic | 45.0% | |
| GCCAACATGCAAAACTCAGA+TGG | - | chr8.1:78010614-78010633 | MS.gene89156:CDS | 45.0% | |
| GGAAACCAAGCCAAATGTTC+AGG | - | chr8.1:78011984-78012003 | MS.gene89156:intron | 45.0% | |
| GTCGAGACTGAATTTCACTG+TGG | - | chr8.1:78011382-78011401 | MS.gene89156:intron | 45.0% | |
| TGAATCTCTTCCTCAGCTTG+TGG | - | chr8.1:78010664-78010683 | MS.gene89156:CDS | 45.0% | |
| TGCAACTGAGATCATGGAGT+TGG | - | chr8.1:78011836-78011855 | MS.gene89156:CDS | 45.0% | |
| ! | CAAGGATTTTCCACAAGCTG+AGG | + | chr8.1:78010677-78010696 | None:intergenic | 45.0% |
| ! | CCCATCTGAGTTTTGCATGT+TGG | + | chr8.1:78010618-78010637 | None:intergenic | 45.0% |
| ! | TGGTTAATGCGCGTTAGCTT+AGG | - | chr8.1:78010969-78010988 | MS.gene89156:intron | 45.0% |
| ! | TTCACCGCTTGGATTTTCAG+AGG | + | chr8.1:78011874-78011893 | None:intergenic | 45.0% |
| !!! | ATATGAAATTTTAATTTTTT+TGG | - | chr8.1:78010357-78010376 | MS.gene89156:intron | 5.0% |
| CTAATACTGTGTCGGATGGC+CGG | - | chr8.1:78010154-78010173 | MS.gene89156:CDS | 50.0% | |
| TGTTGCAGGGTCATTGCTAG+AGG | - | chr8.1:78012290-78012309 | MS.gene89156:CDS | 50.0% | |
| !! | TTGGTTCTGCGCCTTAGCTA+AGG | - | chr8.1:78011270-78011289 | MS.gene89156:intron | 50.0% |
| ACTAGTGACCGGTGCACTTG+GGG | + | chr8.1:78011904-78011923 | None:intergenic | 55.0% | |
| AGAAAACCCCCCAAGTGCAC+CGG | - | chr8.1:78011893-78011912 | MS.gene89156:CDS | 55.0% | |
| CACTAGTGACCGGTGCACTT+GGG | + | chr8.1:78011905-78011924 | None:intergenic | 55.0% | |
| GAACTTCTCCGGTGCCTTAC+CGG | + | chr8.1:78010187-78010206 | None:intergenic | 55.0% | |
| TCACTAGTGACCGGTGCACT+TGG | + | chr8.1:78011906-78011925 | None:intergenic | 55.0% | |
| CTAGTGACCGGTGCACTTGG+GGG | + | chr8.1:78011903-78011922 | None:intergenic | 60.0% | |
| GAGACTCACCGGTAAGGCAC+CGG | - | chr8.1:78010176-78010195 | MS.gene89156:CDS | 60.0% | |
| GTGCCTTACCGGTGAGTCTC+CGG | + | chr8.1:78010176-78010195 | None:intergenic | 60.0% | |
| TAGTGACCGGTGCACTTGGG+GGG | + | chr8.1:78011902-78011921 | None:intergenic | 60.0% | |
| ! | GGGGGGTTTTCTTCACCGCT+TGG | + | chr8.1:78011885-78011904 | None:intergenic | 60.0% |
| TCGGATGGCCGGAGACTCAC+CGG | - | chr8.1:78010165-78010184 | MS.gene89156:CDS | 65.0% | |
| TGGCCGGAGACTCACCGGTA+AGG | - | chr8.1:78010170-78010189 | MS.gene89156:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78010141 | 78012406 | 78010141 | ID=MS.gene89156 |
| chr8.1 | mRNA | 78010141 | 78012406 | 78010141 | ID=MS.gene89156.t1;Parent=MS.gene89156 |
| chr8.1 | exon | 78012241 | 78012406 | 78012241 | ID=MS.gene89156.t1.exon1;Parent=MS.gene89156.t1 |
| chr8.1 | CDS | 78012241 | 78012406 | 78012241 | ID=cds.MS.gene89156.t1;Parent=MS.gene89156.t1 |
| chr8.1 | exon | 78011830 | 78011953 | 78011830 | ID=MS.gene89156.t1.exon2;Parent=MS.gene89156.t1 |
| chr8.1 | CDS | 78011830 | 78011953 | 78011830 | ID=cds.MS.gene89156.t1;Parent=MS.gene89156.t1 |
| chr8.1 | exon | 78010542 | 78010792 | 78010542 | ID=MS.gene89156.t1.exon3;Parent=MS.gene89156.t1 |
| chr8.1 | CDS | 78010542 | 78010792 | 78010542 | ID=cds.MS.gene89156.t1;Parent=MS.gene89156.t1 |
| chr8.1 | exon | 78010358 | 78010415 | 78010358 | ID=MS.gene89156.t1.exon4;Parent=MS.gene89156.t1 |
| chr8.1 | CDS | 78010358 | 78010415 | 78010358 | ID=cds.MS.gene89156.t1;Parent=MS.gene89156.t1 |
| chr8.1 | exon | 78010141 | 78010249 | 78010141 | ID=MS.gene89156.t1.exon5;Parent=MS.gene89156.t1 |
| chr8.1 | CDS | 78010141 | 78010249 | 78010141 | ID=cds.MS.gene89156.t1;Parent=MS.gene89156.t1 |
| Gene Sequence |
| Protein sequence |
