Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057422.t1 | XP_003595354.1 | 92.9 | 253 | 15 | 1 | 1 | 250 | 1 | 253 | 1.40E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057422.t1 | Q9S7M2 | 36.9 | 271 | 104 | 7 | 2 | 240 | 3 | 238 | 5.9e-31 | 136.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057422.t1 | G7IIQ4 | 92.9 | 253 | 15 | 1 | 1 | 250 | 1 | 253 | 1.0e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene057422.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051780 | MS.gene057422 | 0.85961 | 3.67E-63 | -1.69E-46 |
| MS.gene051837 | MS.gene057422 | 0.81827 | 2.14E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene067477 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene09595 | 0.801562 | 8.49E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene20293 | 0.806662 | 7.38E-50 | -1.69E-46 |
| MS.gene057422 | MS.gene24332 | 0.817337 | 3.47E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene24789 | 0.857113 | 2.04E-62 | -1.69E-46 |
| MS.gene057422 | MS.gene24855 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene057422 | MS.gene24856 | 0.815475 | 9.07E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene25093 | 0.821867 | 3.21E-53 | -1.69E-46 |
| MS.gene057422 | MS.gene26683 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene057422 | MS.gene48476 | 0.805838 | 1.10E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene56695 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene59435 | 0.814851 | 1.25E-51 | -1.69E-46 |
| MS.gene057422 | MS.gene63043 | 0.818591 | 1.81E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene64493 | 0.95144 | 2.03E-109 | -1.69E-46 |
| MS.gene057422 | MS.gene64732 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene057422 | MS.gene65682 | 0.806516 | 7.92E-50 | -1.69E-46 |
| MS.gene057422 | MS.gene68028 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene80640 | 0.815451 | 9.18E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene81604 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene057422 | MS.gene83618 | 0.818159 | 2.27E-52 | -1.69E-46 |
| MS.gene057422 | MS.gene89156 | 0.808045 | 3.76E-50 | -1.69E-46 |
| MS.gene057422 | MS.gene90362 | 0.814037 | 1.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057422 | MS.gene85313 | PPI |
| MS.gene057422 | MS.gene068904 | PPI |
| MS.gene057422 | MS.gene025386 | PPI |
| MS.gene057422 | MS.gene062084 | PPI |
| MS.gene057422 | MS.gene85363 | PPI |
| MS.gene057422 | MS.gene26736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057422.t1 | MTR_2g042900 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 0.0 | 500 |
| MS.gene057422.t1 | MTR_2g042900 | 85.156 | 256 | 5 | 2 | 1 | 223 | 1 | 256 | 1.31e-153 | 427 |
| MS.gene057422.t1 | MTR_4g124960 | 44.961 | 258 | 77 | 10 | 1 | 248 | 1 | 203 | 1.95e-48 | 159 |
| MS.gene057422.t1 | MTR_4g124960 | 44.934 | 227 | 69 | 8 | 1 | 226 | 1 | 172 | 2.40e-42 | 142 |
| MS.gene057422.t1 | MTR_5g013515 | 45.513 | 156 | 47 | 6 | 99 | 242 | 3 | 132 | 5.20e-35 | 122 |
| MS.gene057422.t1 | MTR_5g013530 | 46.309 | 149 | 38 | 4 | 105 | 242 | 18 | 135 | 8.86e-34 | 119 |
| MS.gene057422.t1 | MTR_5g013530 | 44.512 | 164 | 43 | 5 | 96 | 242 | 25 | 157 | 1.39e-33 | 120 |
| MS.gene057422.t1 | MTR_5g013520 | 46.622 | 148 | 38 | 5 | 105 | 242 | 11 | 127 | 2.04e-33 | 118 |
| MS.gene057422.t1 | MTR_8g021380 | 32.018 | 228 | 121 | 6 | 12 | 233 | 11 | 210 | 1.29e-22 | 93.2 |
| MS.gene057422.t1 | MTR_4g124950 | 36.196 | 163 | 57 | 6 | 69 | 231 | 1 | 116 | 7.11e-19 | 80.1 |
| MS.gene057422.t1 | MTR_8g021380 | 30.165 | 242 | 128 | 8 | 12 | 223 | 11 | 241 | 1.42e-15 | 74.7 |
| MS.gene057422.t1 | MTR_2g044910 | 32.031 | 128 | 62 | 5 | 109 | 230 | 15 | 123 | 1.34e-13 | 67.0 |
| MS.gene057422.t1 | MTR_2g044910 | 32.031 | 128 | 62 | 5 | 109 | 230 | 58 | 166 | 2.02e-13 | 67.4 |
| MS.gene057422.t1 | MTR_1g031930 | 30.460 | 174 | 67 | 4 | 107 | 237 | 111 | 273 | 1.63e-12 | 66.2 |
| MS.gene057422.t1 | MTR_1g031930 | 30.460 | 174 | 67 | 4 | 107 | 237 | 172 | 334 | 7.98e-12 | 64.7 |
| MS.gene057422.t1 | MTR_4g124360 | 29.771 | 131 | 69 | 4 | 105 | 230 | 3 | 115 | 5.02e-11 | 59.3 |
| MS.gene057422.t1 | MTR_4g124360 | 29.771 | 131 | 69 | 4 | 105 | 230 | 41 | 153 | 6.66e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057422.t1 | AT1G74950 | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 3.07e-43 | 147 |
| MS.gene057422.t1 | AT1G19180 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.23e-41 | 141 |
| MS.gene057422.t1 | AT1G19180 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.23e-41 | 141 |
| MS.gene057422.t1 | AT1G74950 | 36.863 | 255 | 92 | 8 | 2 | 223 | 3 | 221 | 5.48e-37 | 130 |
| MS.gene057422.t1 | AT1G72450 | 32.328 | 232 | 121 | 9 | 17 | 234 | 4 | 213 | 3.15e-27 | 106 |
| MS.gene057422.t1 | AT1G17380 | 30.677 | 251 | 129 | 7 | 1 | 241 | 1 | 216 | 5.98e-25 | 100 |
| MS.gene057422.t1 | AT1G19180 | 39.041 | 146 | 59 | 4 | 106 | 242 | 57 | 181 | 1.89e-22 | 91.3 |
| MS.gene057422.t1 | AT1G72450 | 30.317 | 221 | 118 | 9 | 17 | 223 | 4 | 202 | 3.19e-22 | 91.3 |
| MS.gene057422.t1 | AT1G17380 | 29.954 | 217 | 114 | 6 | 17 | 223 | 10 | 198 | 1.81e-19 | 84.3 |
| MS.gene057422.t1 | AT1G17380 | 34.507 | 142 | 59 | 5 | 105 | 236 | 65 | 182 | 3.97e-14 | 70.1 |
| MS.gene057422.t1 | AT5G20900 | 31.746 | 126 | 63 | 3 | 109 | 230 | 57 | 163 | 5.81e-12 | 63.2 |
| MS.gene057422.t1 | AT3G17860 | 33.544 | 158 | 70 | 7 | 108 | 234 | 177 | 330 | 2.66e-11 | 63.2 |
| MS.gene057422.t1 | AT3G17860 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.81e-11 | 62.8 |
| MS.gene057422.t1 | AT3G17860 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.81e-11 | 62.8 |
| MS.gene057422.t1 | AT3G17860 | 33.544 | 158 | 70 | 7 | 108 | 234 | 164 | 317 | 4.26e-11 | 62.4 |
Find 59 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGAGTCAATATATTA+AGG | 0.231958 | 2.1:+51216471 | MS.gene057422:CDS |
| GCCTTCATTTCCTCCTAATT+TGG | 0.255924 | 2.1:+51217946 | MS.gene057422:CDS |
| AGCCTCGCTTCATCGGTTTC+TGG | 0.260318 | 2.1:+51218201 | MS.gene057422:CDS |
| GCTGGCTTATTAACTTGATA+TGG | 0.264533 | 2.1:-51218401 | None:intergenic |
| CATGAGCTCATGTGCTTTAT+CGG | 0.271727 | 2.1:-51217858 | None:intergenic |
| AGCGAGGCTTTCCTCATAAT+TGG | 0.283392 | 2.1:-51218187 | None:intergenic |
| ACCGAAGTTCTGACCAAATT+AGG | 0.285058 | 2.1:-51217959 | None:intergenic |
| TCGGAATATTCAGAAGTTTC+CGG | 0.324209 | 2.1:+51216394 | MS.gene057422:CDS |
| ATTGTCAATTGTGCAGCTTT+AGG | 0.328266 | 2.1:-51217794 | None:intergenic |
| CTTCGCCGGTGGTTTGTTGC+CGG | 0.328284 | 2.1:-51216413 | None:intergenic |
| ACAAAAGAACCTTACAACTA+TGG | 0.341905 | 2.1:+51217187 | MS.gene057422:CDS |
| GAGTCAATATATTAAGGAAA+AGG | 0.376605 | 2.1:+51216477 | MS.gene057422:CDS |
| CCGGTGCCGGTGCCAGTACT+AGG | 0.379925 | 2.1:-51218022 | None:intergenic |
| TGCTTCAAAGATCTTTCTCT+TGG | 0.389248 | 2.1:+51216502 | MS.gene057422:CDS |
| CATGGTTGGAAACAAGTTCA+TGG | 0.390560 | 2.1:-51217150 | None:intergenic |
| AAGAAATTACCGCAAAGATT+AGG | 0.403918 | 2.1:-51218079 | None:intergenic |
| AGTCAATATATTAAGGAAAA+GGG | 0.413916 | 2.1:+51216478 | MS.gene057422:CDS |
| AATGATTTGCAGTGCTATCA+AGG | 0.444008 | 2.1:+51217769 | MS.gene057422:intron |
| CCTTCCAGACCTAATCTTTG+CGG | 0.448657 | 2.1:+51218070 | MS.gene057422:CDS |
| TTGCAGATCTGCCAATTATG+AGG | 0.452309 | 2.1:+51218176 | MS.gene057422:intron |
| TTCATTAATCGAGCCGGTGC+CGG | 0.460250 | 2.1:-51218035 | None:intergenic |
| ATTACCGCAAAGATTAGGTC+TGG | 0.470927 | 2.1:-51218074 | None:intergenic |
| AGCTCATGTGCTTTATCGGC+AGG | 0.475762 | 2.1:-51217854 | None:intergenic |
| GAGTCCATGTCATGGCTTGT+GGG | 0.483230 | 2.1:+51218425 | MS.gene057422:CDS |
| TCCTAATTTGGTCAGAACTT+CGG | 0.497883 | 2.1:+51217958 | MS.gene057422:CDS |
| TAGGTCTGGAAGGCACTTGA+AGG | 0.506440 | 2.1:-51218060 | None:intergenic |
| ACATGCAACACAGACCCTTC+TGG | 0.507485 | 2.1:+51216529 | MS.gene057422:CDS |
| TGAGGAAAGCCTCGCTTCAT+CGG | 0.508146 | 2.1:+51218194 | MS.gene057422:CDS |
| TCGGTTTCTGGAGAAGAGAA+AGG | 0.512539 | 2.1:+51218213 | MS.gene057422:CDS |
| CAAACCACCGGCGAAGTCAC+CGG | 0.513459 | 2.1:+51216420 | MS.gene057422:CDS |
| CATGAACTTGTTTCCAACCA+TGG | 0.520010 | 2.1:+51217151 | MS.gene057422:CDS |
| CGGTGCCGGTGCCAGTACTA+GGG | 0.531615 | 2.1:-51218021 | None:intergenic |
| CGATAAAGCACATGAGCTCA+TGG | 0.531706 | 2.1:+51217859 | MS.gene057422:CDS |
| TGAGCAAATCCATAGTTGTA+AGG | 0.532508 | 2.1:-51217196 | None:intergenic |
| ATTAACTTGATATGGTGCAT+TGG | 0.537946 | 2.1:-51218393 | None:intergenic |
| TGAGTCCATGTCATGGCTTG+TGG | 0.539136 | 2.1:+51218424 | MS.gene057422:CDS |
| GTGAACATCATCCCTAGTAC+TGG | 0.540119 | 2.1:+51218010 | MS.gene057422:CDS |
| GAATTGTTCAAAGCAGCTTG+TGG | 0.542652 | 2.1:-51217221 | None:intergenic |
| CCTAGTACTGGCACCGGCAC+CGG | 0.542742 | 2.1:+51218022 | MS.gene057422:CDS |
| TTCAACTATGTCTACCTCAT+CGG | 0.558400 | 2.1:+51216375 | None:intergenic |
| ATGTTCACAGTAGGAACGAT+TGG | 0.560290 | 2.1:-51217995 | None:intergenic |
| TGCACCCACAAGCCATGACA+TGG | 0.562173 | 2.1:-51218429 | None:intergenic |
| ACCAAATTAGGAGGAAATGA+AGG | 0.565826 | 2.1:-51217947 | None:intergenic |
| TTCTCCGGTGACTTCGCCGG+TGG | 0.568647 | 2.1:-51216424 | None:intergenic |
| AAGGTGTTCATTAATCGAGC+CGG | 0.572295 | 2.1:-51218041 | None:intergenic |
| AGCCATGACATGGACTCAGC+TGG | 0.572954 | 2.1:-51218419 | None:intergenic |
| AATTAGGAGGAAATGAAGGC+TGG | 0.580229 | 2.1:-51217943 | None:intergenic |
| ATCATCCCTAGTACTGGCAC+CGG | 0.592342 | 2.1:+51218016 | MS.gene057422:CDS |
| CCGCAAAGATTAGGTCTGGA+AGG | 0.596635 | 2.1:-51218070 | None:intergenic |
| ATTAAGGTTGCGTACCAGAA+GGG | 0.608421 | 2.1:-51216543 | None:intergenic |
| CTCCAGAAACCGATGAAGCG+AGG | 0.614975 | 2.1:-51218203 | None:intergenic |
| TTCTGGAGAAGAGAAAGGAT+AGG | 0.619484 | 2.1:+51218218 | MS.gene057422:CDS |
| GAAGTTCTGACCAAATTAGG+AGG | 0.621959 | 2.1:-51217956 | None:intergenic |
| ATGATTTGCAGTGCTATCAA+GGG | 0.622638 | 2.1:+51217770 | MS.gene057422:intron |
| AGTTTCCGGCAACAAACCAC+CGG | 0.625545 | 2.1:+51216408 | MS.gene057422:CDS |
| CTAGGGATGATGTTCACAGT+AGG | 0.634680 | 2.1:-51218004 | None:intergenic |
| AGCCAGCTGAGTCCATGTCA+TGG | 0.640187 | 2.1:+51218417 | MS.gene057422:CDS |
| CACAGTAGGAACGATTGGAG+CGG | 0.672313 | 2.1:-51217990 | None:intergenic |
| AACTTCTGAATATTCCGATG+AGG | 0.677602 | 2.1:-51216389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTTTTTTAAAATT+TGG | + | chr2.1:51216633-51216652 | MS.gene057422:intron | 0.0% |
| !! | AAAAATTAATAATCAACTAA+TGG | - | chr2.1:51217713-51217732 | None:intergenic | 10.0% |
| !! | AAATAAAAAAATAAACAACA+TGG | - | chr2.1:51216885-51216904 | None:intergenic | 10.0% |
| !! | AGTTAAAAAAATAAATTTGA+TGG | + | chr2.1:51217451-51217470 | MS.gene057422:intron | 10.0% |
| !! | TACAATTGAATAATTATAAA+AGG | - | chr2.1:51216836-51216855 | None:intergenic | 10.0% |
| !! | TTTATTGAGTCAATATATTA+AGG | + | chr2.1:51216471-51216490 | MS.gene057422:CDS | 15.0% |
| !!! | AATCTTTGAAATTTTTTTGT+GGG | + | chr2.1:51216605-51216624 | MS.gene057422:intron | 15.0% |
| !!! | ATTTTTTTACAAACCTAATT+TGG | - | chr2.1:51217297-51217316 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCCTTTTTTGTA+AGG | + | chr2.1:51216780-51216799 | MS.gene057422:intron | 15.0% |
| !!! | TAATTTATAGCTCTAATTAA+TGG | + | chr2.1:51216952-51216971 | MS.gene057422:intron | 15.0% |
| !!! | TTTAAAATTTGGTATCTTAA+TGG | + | chr2.1:51216644-51216663 | MS.gene057422:intron | 15.0% |
| !! | AAAAAATAAATTTGATGGAG+AGG | + | chr2.1:51217456-51217475 | MS.gene057422:intron | 20.0% |
| !! | AGTCAATATATTAAGGAAAA+GGG | + | chr2.1:51216478-51216497 | MS.gene057422:CDS | 20.0% |
| !! | ATTTCATTTCATACCAAATT+AGG | + | chr2.1:51217281-51217300 | MS.gene057422:intron | 20.0% |
| !! | GAAACAAAAAACGAAAAATT+CGG | - | chr2.1:51216573-51216592 | None:intergenic | 20.0% |
| !! | TTAATTATTCCTTTCTTCTT+AGG | + | chr2.1:51216667-51216686 | MS.gene057422:intron | 20.0% |
| !!! | AATTTGTTTTTTTTCTTTGC+AGG | + | chr2.1:51217095-51217114 | MS.gene057422:intron | 20.0% |
| !!! | AATTTTTCGTTTTTTGTTTC+TGG | + | chr2.1:51216573-51216592 | MS.gene057422:intron | 20.0% |
| !!! | ATATATTAGTCTCTAATTGA+AGG | - | chr2.1:51217738-51217757 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATCTGCTAAAT+TGG | + | chr2.1:51216995-51217014 | MS.gene057422:intron | 20.0% |
| !!! | ATTTGTTTTTTTTCTTTGCA+GGG | + | chr2.1:51217096-51217115 | MS.gene057422:intron | 20.0% |
| !!! | ATTTTTCGTTTTTTGTTTCT+GGG | + | chr2.1:51216574-51216593 | MS.gene057422:intron | 20.0% |
| !!! | CAATCTTTGAAATTTTTTTG+TGG | + | chr2.1:51216604-51216623 | MS.gene057422:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+CGG | + | chr2.1:51217806-51217825 | MS.gene057422:CDS | 20.0% |
| !!! | CTTGTAAATGAACTATTTTT+TGG | + | chr2.1:51218265-51218284 | MS.gene057422:intron | 20.0% |
| ! | AACCATTGACACTTAAAATT+CGG | + | chr2.1:51218104-51218123 | MS.gene057422:intron | 25.0% |
| ! | AATTTATGAGTGATGACAAA+TGG | + | chr2.1:51217318-51217337 | MS.gene057422:intron | 25.0% |
| ! | ATCGACAAAAATAAACAACA+TGG | - | chr2.1:51216913-51216932 | None:intergenic | 25.0% |
| ! | ATTCTAGTACTTAAGAGTAA+CGG | + | chr2.1:51216704-51216723 | MS.gene057422:intron | 25.0% |
| ! | GAGTCAATATATTAAGGAAA+AGG | + | chr2.1:51216477-51216496 | MS.gene057422:CDS | 25.0% |
| ! | TTGATAAGATTGTAATCTTG+TGG | + | chr2.1:51217027-51217046 | MS.gene057422:intron | 25.0% |
| !! | ATAGTTCTACCTTACAAAAA+AGG | - | chr2.1:51216792-51216811 | None:intergenic | 25.0% |
| AAGAAATTACCGCAAAGATT+AGG | - | chr2.1:51218082-51218101 | None:intergenic | 30.0% | |
| ACAAAAGAACCTTACAACTA+TGG | + | chr2.1:51217187-51217206 | MS.gene057422:CDS | 30.0% | |
| ATTATTCCTTTCTTCTTAGG+TGG | + | chr2.1:51216670-51216689 | MS.gene057422:intron | 30.0% | |
| ATTTCACTCGCTAAATGTAA+CGG | + | chr2.1:51217552-51217571 | MS.gene057422:intron | 30.0% | |
| CAAAATGAAGAAAACTCACT+TGG | - | chr2.1:51217246-51217265 | None:intergenic | 30.0% | |
| CGAAAAATTCGGAGAAATTA+AGG | - | chr2.1:51216562-51216581 | None:intergenic | 30.0% | |
| TGCTATTAGTCATTACTAAG+CGG | - | chr2.1:51217636-51217655 | None:intergenic | 30.0% | |
| ! | ATTAACTTGATATGGTGCAT+TGG | - | chr2.1:51218396-51218415 | None:intergenic | 30.0% |
| ! | TTGTGTCAAATTGTTTTCCA+TGG | - | chr2.1:51217171-51217190 | None:intergenic | 30.0% |
| !! | ATCCGAATTTTAAGTGTCAA+TGG | - | chr2.1:51218109-51218128 | None:intergenic | 30.0% |
| !! | TTTTTAACTAGTTCCACCTA+GGG | - | chr2.1:51217440-51217459 | None:intergenic | 30.0% |
| !!! | TTTTTTAACTAGTTCCACCT+AGG | - | chr2.1:51217441-51217460 | None:intergenic | 30.0% |
| AACTTCTGAATATTCCGATG+AGG | - | chr2.1:51216392-51216411 | None:intergenic | 35.0% | |
| ACCAAATTAGGAGGAAATGA+AGG | - | chr2.1:51217950-51217969 | None:intergenic | 35.0% | |
| ATTCGGATGACACGAAAAAT+TGG | + | chr2.1:51218121-51218140 | MS.gene057422:intron | 35.0% | |
| ATTGTCAATTGTGCAGCTTT+AGG | - | chr2.1:51217797-51217816 | None:intergenic | 35.0% | |
| TATCCTCTACAATTGCAGTA+TGG | - | chr2.1:51217595-51217614 | None:intergenic | 35.0% | |
| TATGAACCACCTAAGAAGAA+AGG | - | chr2.1:51216679-51216698 | None:intergenic | 35.0% | |
| TCCTAATTTGGTCAGAACTT+CGG | + | chr2.1:51217958-51217977 | MS.gene057422:CDS | 35.0% | |
| TCGGAATATTCAGAAGTTTC+CGG | + | chr2.1:51216394-51216413 | MS.gene057422:CDS | 35.0% | |
| TGAGCAAATCCATAGTTGTA+AGG | - | chr2.1:51217199-51217218 | None:intergenic | 35.0% | |
| TGCTTCAAAGATCTTTCTCT+TGG | + | chr2.1:51216502-51216521 | MS.gene057422:CDS | 35.0% | |
| ! | AATGATTTGCAGTGCTATCA+AGG | + | chr2.1:51217769-51217788 | MS.gene057422:intron | 35.0% |
| ! | ATGATTTGCAGTGCTATCAA+GGG | + | chr2.1:51217770-51217789 | MS.gene057422:intron | 35.0% |
| ! | CTCATGGCTTTTGCTAATAA+AGG | + | chr2.1:51217875-51217894 | MS.gene057422:CDS | 35.0% |
| ! | GCTGGCTTATTAACTTGATA+TGG | - | chr2.1:51218404-51218423 | None:intergenic | 35.0% |
| ! | GTCAAATTGTTTTCCATGGT+TGG | - | chr2.1:51217167-51217186 | None:intergenic | 35.0% |
| !! | TGAGAGAAAGTTGTTTTCTC+CGG | - | chr2.1:51216442-51216461 | None:intergenic | 35.0% |
| AATTAAGGTTGCGTACCAGA+AGG | - | chr2.1:51216547-51216566 | None:intergenic | 40.0% | |
| AATTAGGAGGAAATGAAGGC+TGG | - | chr2.1:51217946-51217965 | None:intergenic | 40.0% | |
| ACCTAGATCCTCTACAGATA+CGG | + | chr2.1:51217486-51217505 | MS.gene057422:intron | 40.0% | |
| ATGTTCACAGTAGGAACGAT+TGG | - | chr2.1:51217998-51218017 | None:intergenic | 40.0% | |
| ATTAAGGTTGCGTACCAGAA+GGG | - | chr2.1:51216546-51216565 | None:intergenic | 40.0% | |
| ATTACCGCAAAGATTAGGTC+TGG | - | chr2.1:51218077-51218096 | None:intergenic | 40.0% | |
| ATTAGTCATTACTAAGCGGC+TGG | - | chr2.1:51217632-51217651 | None:intergenic | 40.0% | |
| ATTGGCAGATCTGCAAACAA+AGG | - | chr2.1:51218172-51218191 | None:intergenic | 40.0% | |
| CATGAGCTCATGTGCTTTAT+CGG | - | chr2.1:51217861-51217880 | None:intergenic | 40.0% | |
| CATGGTTGGAAACAAGTTCA+TGG | - | chr2.1:51217153-51217172 | None:intergenic | 40.0% | |
| GAATTGTTCAAAGCAGCTTG+TGG | - | chr2.1:51217224-51217243 | None:intergenic | 40.0% | |
| GCCTTCATTTCCTCCTAATT+TGG | + | chr2.1:51217946-51217965 | MS.gene057422:CDS | 40.0% | |
| TCTACAATTGCAGTATGGTG+CGG | - | chr2.1:51217590-51217609 | None:intergenic | 40.0% | |
| TTGCAGATCTGCCAATTATG+AGG | + | chr2.1:51218176-51218195 | MS.gene057422:intron | 40.0% | |
| TTTCCACGAATTGACCCTTT+CGG | - | chr2.1:51217391-51217410 | None:intergenic | 40.0% | |
| ! | AAGGTGTTCATTAATCGAGC+CGG | - | chr2.1:51218044-51218063 | None:intergenic | 40.0% |
| ! | ACCGAAGTTCTGACCAAATT+AGG | - | chr2.1:51217962-51217981 | None:intergenic | 40.0% |
| ! | CATGAACTTGTTTCCAACCA+TGG | + | chr2.1:51217151-51217170 | MS.gene057422:CDS | 40.0% |
| ! | GAAGTTCTGACCAAATTAGG+AGG | - | chr2.1:51217959-51217978 | None:intergenic | 40.0% |
| ! | TTCGTGGAAATAACTTGCAG+AGG | + | chr2.1:51217401-51217420 | MS.gene057422:intron | 40.0% |
| ! | TTCTGGAGAAGAGAAAGGAT+AGG | + | chr2.1:51218218-51218237 | MS.gene057422:CDS | 40.0% |
| ACCGTATCTGTAGAGGATCT+AGG | - | chr2.1:51217490-51217509 | None:intergenic | 45.0% | |
| AGCGAGGCTTTCCTCATAAT+TGG | - | chr2.1:51218190-51218209 | None:intergenic | 45.0% | |
| AGGATTTAGATCCTCTCCCT+AGG | + | chr2.1:51217421-51217440 | MS.gene057422:intron | 45.0% | |
| ATTTAGATCCTCTCCCTAGG+TGG | + | chr2.1:51217424-51217443 | MS.gene057422:intron | 45.0% | |
| CCTTCCAGACCTAATCTTTG+CGG | + | chr2.1:51218070-51218089 | MS.gene057422:CDS | 45.0% | |
| CGATAAAGCACATGAGCTCA+TGG | + | chr2.1:51217859-51217878 | MS.gene057422:CDS | 45.0% | |
| CTAGGGATGATGTTCACAGT+AGG | - | chr2.1:51218007-51218026 | None:intergenic | 45.0% | |
| GATCCTCTACAGATACGGTA+TGG | + | chr2.1:51217491-51217510 | MS.gene057422:intron | 45.0% | |
| GCACCATACTGCAATTGTAG+AGG | + | chr2.1:51217589-51217608 | MS.gene057422:intron | 45.0% | |
| GGAGAAGAGAAAGGATAGGT+AGG | + | chr2.1:51218222-51218241 | MS.gene057422:intron | 45.0% | |
| GTGAACATCATCCCTAGTAC+TGG | + | chr2.1:51218010-51218029 | MS.gene057422:CDS | 45.0% | |
| ! | TCGGTTTCTGGAGAAGAGAA+AGG | + | chr2.1:51218213-51218232 | MS.gene057422:CDS | 45.0% |
| AACTAGTTCCACCTAGGGAG+AGG | - | chr2.1:51217435-51217454 | None:intergenic | 50.0% | |
| ACATGCAACACAGACCCTTC+TGG | + | chr2.1:51216529-51216548 | MS.gene057422:CDS | 50.0% | |
| ACGAATTGACCCTTTCGGCA+AGG | - | chr2.1:51217386-51217405 | None:intergenic | 50.0% | |
| AGCTCATGTGCTTTATCGGC+AGG | - | chr2.1:51217857-51217876 | None:intergenic | 50.0% | |
| AGTTTCCGGCAACAAACCAC+CGG | + | chr2.1:51216408-51216427 | MS.gene057422:CDS | 50.0% | |
| CACAGTAGGAACGATTGGAG+CGG | - | chr2.1:51217993-51218012 | None:intergenic | 50.0% | |
| CCGCAAAGATTAGGTCTGGA+AGG | - | chr2.1:51218073-51218092 | None:intergenic | 50.0% | |
| GCACCATACCGTATCTGTAG+AGG | - | chr2.1:51217497-51217516 | None:intergenic | 50.0% | |
| TGAGGAAAGCCTCGCTTCAT+CGG | + | chr2.1:51218194-51218213 | MS.gene057422:CDS | 50.0% | |
| TGAGTCCATGTCATGGCTTG+TGG | + | chr2.1:51218424-51218443 | MS.gene057422:CDS | 50.0% | |
| TTCATTAATCGAGCCGGTGC+CGG | - | chr2.1:51218038-51218057 | None:intergenic | 50.0% | |
| TTGCCGAAAGGGTCAATTCG+TGG | + | chr2.1:51217385-51217404 | MS.gene057422:intron | 50.0% | |
| ! | GAGTCCATGTCATGGCTTGT+GGG | + | chr2.1:51218425-51218444 | MS.gene057422:CDS | 50.0% |
| ! | TCATTACTAAGCGGCTGGCT+CGG | - | chr2.1:51217627-51217646 | None:intergenic | 50.0% |
| !! | ATCATCCCTAGTACTGGCAC+CGG | + | chr2.1:51218016-51218035 | MS.gene057422:CDS | 50.0% |
| !! | TAGGTCTGGAAGGCACTTGA+AGG | - | chr2.1:51218063-51218082 | None:intergenic | 50.0% |
| AGCCAGCTGAGTCCATGTCA+TGG | + | chr2.1:51218417-51218436 | MS.gene057422:CDS | 55.0% | |
| AGCCATGACATGGACTCAGC+TGG | - | chr2.1:51218422-51218441 | None:intergenic | 55.0% | |
| ATAGCTGTCGCCTTGCCGAA+AGG | + | chr2.1:51217373-51217392 | MS.gene057422:intron | 55.0% | |
| CTCCAGAAACCGATGAAGCG+AGG | - | chr2.1:51218206-51218225 | None:intergenic | 55.0% | |
| TAGCTGTCGCCTTGCCGAAA+GGG | + | chr2.1:51217374-51217393 | MS.gene057422:intron | 55.0% | |
| TATCGTCACGCTAGCCGCTA+AGG | - | chr2.1:51217354-51217373 | None:intergenic | 55.0% | |
| TGCACCCACAAGCCATGACA+TGG | - | chr2.1:51218432-51218451 | None:intergenic | 55.0% | |
| ! | GTTTTCTCCGGTGACTTCGC+CGG | - | chr2.1:51216430-51216449 | None:intergenic | 55.0% |
| !! | AGCCTCGCTTCATCGGTTTC+TGG | + | chr2.1:51218201-51218220 | MS.gene057422:CDS | 55.0% |
| ATGGCGAGTGCGAGCCTTAG+CGG | + | chr2.1:51217337-51217356 | MS.gene057422:intron | 60.0% | |
| CAAACCACCGGCGAAGTCAC+CGG | + | chr2.1:51216420-51216439 | MS.gene057422:CDS | 60.0% | |
| !! | CTTCGCCGGTGGTTTGTTGC+CGG | - | chr2.1:51216416-51216435 | None:intergenic | 60.0% |
| TTCTCCGGTGACTTCGCCGG+TGG | - | chr2.1:51216427-51216446 | None:intergenic | 65.0% | |
| !! | CCTAGTACTGGCACCGGCAC+CGG | + | chr2.1:51218022-51218041 | MS.gene057422:CDS | 65.0% |
| !! | CGGTGCCGGTGCCAGTACTA+GGG | - | chr2.1:51218024-51218043 | None:intergenic | 65.0% |
| !! | CCGGTGCCGGTGCCAGTACT+AGG | - | chr2.1:51218025-51218044 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 51216382 | 51218469 | 51216382 | ID=MS.gene057422 |
| chr2.1 | mRNA | 51216382 | 51218469 | 51216382 | ID=MS.gene057422.t1;Parent=MS.gene057422 |
| chr2.1 | exon | 51216382 | 51216550 | 51216382 | ID=MS.gene057422.t1.exon1;Parent=MS.gene057422.t1 |
| chr2.1 | CDS | 51216382 | 51216550 | 51216382 | ID=cds.MS.gene057422.t1;Parent=MS.gene057422.t1 |
| chr2.1 | exon | 51217117 | 51217246 | 51217117 | ID=MS.gene057422.t1.exon2;Parent=MS.gene057422.t1 |
| chr2.1 | CDS | 51217117 | 51217246 | 51217117 | ID=cds.MS.gene057422.t1;Parent=MS.gene057422.t1 |
| chr2.1 | exon | 51217781 | 51218091 | 51217781 | ID=MS.gene057422.t1.exon3;Parent=MS.gene057422.t1 |
| chr2.1 | CDS | 51217781 | 51218091 | 51217781 | ID=cds.MS.gene057422.t1;Parent=MS.gene057422.t1 |
| chr2.1 | exon | 51218182 | 51218239 | 51218182 | ID=MS.gene057422.t1.exon4;Parent=MS.gene057422.t1 |
| chr2.1 | CDS | 51218182 | 51218239 | 51218182 | ID=cds.MS.gene057422.t1;Parent=MS.gene057422.t1 |
| chr2.1 | exon | 51218385 | 51218469 | 51218385 | ID=MS.gene057422.t1.exon5;Parent=MS.gene057422.t1 |
| chr2.1 | CDS | 51218385 | 51218469 | 51218385 | ID=cds.MS.gene057422.t1;Parent=MS.gene057422.t1 |
| Gene Sequence |
| Protein sequence |
