Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89239.t1 | XP_013443248.1 | 82.4 | 404 | 50 | 9 | 1 | 397 | 1 | 390 | 9.00E-166 | 593.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89239.t1 | A0A072TK54 | 82.4 | 404 | 50 | 9 | 1 | 397 | 1 | 390 | 6.5e-166 | 593.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055134 | MS.gene89239 | 0.818789 | 1.63E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene89239 | 0.833624 | 4.79E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89239.t1 | MTR_0027s0090 | 85.644 | 404 | 37 | 9 | 1 | 397 | 1 | 390 | 0.0 | 625 |
| MS.gene89239.t1 | MTR_4g019840 | 28.962 | 366 | 172 | 16 | 51 | 397 | 9 | 305 | 2.16e-20 | 91.3 |
| MS.gene89239.t1 | MTR_5g081460 | 31.458 | 391 | 185 | 18 | 44 | 397 | 18 | 362 | 1.39e-15 | 77.8 |
| MS.gene89239.t1 | MTR_2g097800 | 38.583 | 127 | 54 | 5 | 276 | 397 | 214 | 321 | 2.29e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89239.t1 | AT3G54000 | 30.695 | 417 | 193 | 21 | 5 | 397 | 8 | 352 | 1.61e-20 | 92.4 |
| MS.gene89239.t1 | AT3G54000 | 32.471 | 348 | 159 | 18 | 5 | 328 | 8 | 303 | 7.77e-20 | 89.7 |
| MS.gene89239.t1 | AT3G54000 | 30.581 | 327 | 152 | 17 | 5 | 308 | 8 | 282 | 1.10e-12 | 68.6 |
Find 81 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAGTCTTCAAGCTTT+AGG | 0.234041 | 7.1:+36842816 | None:intergenic |
| CAATCAACCCTATGTGCTTT+TGG | 0.244653 | 7.1:-36843932 | MS.gene89239:CDS |
| GTCTTCAAGCTTTAGGTTAA+GGG | 0.268229 | 7.1:+36842823 | None:intergenic |
| CTGAAAGGCTGAACACAATA+AGG | 0.279562 | 7.1:-36843544 | MS.gene89239:CDS |
| TGATGAAACTTTGCGGCATT+TGG | 0.289924 | 7.1:+36843901 | None:intergenic |
| TCCACCTCTAATGTTGAAAA+TGG | 0.300073 | 7.1:-36842755 | MS.gene89239:intron |
| GCGGGTATGCAGAAGCAAAA+TGG | 0.310089 | 7.1:-36843521 | MS.gene89239:CDS |
| AGTCTTCAAGCTTTAGGTTA+AGG | 0.313871 | 7.1:+36842822 | None:intergenic |
| TGCTGCTGGCTGAGGCCTGC+TGG | 0.319876 | 7.1:+36842471 | None:intergenic |
| AACAACAACGTTGCTGGTTT+AGG | 0.336970 | 7.1:-36843443 | MS.gene89239:CDS |
| GCATTCTCACAAACACCATT+AGG | 0.337817 | 7.1:+36843866 | None:intergenic |
| CTGATGAAGTTGAAACTTTG+AGG | 0.341619 | 7.1:-36843805 | MS.gene89239:CDS |
| ATTTGGATGACGGTGAGTTC+TGG | 0.349881 | 7.1:-36844354 | MS.gene89239:CDS |
| ATTTCATTGCTCACTGCTGC+TGG | 0.359817 | 7.1:+36842457 | None:intergenic |
| CGGGTATGCAGAAGCAAAAT+GGG | 0.371790 | 7.1:-36843520 | MS.gene89239:CDS |
| TTGCTCACTGCTGCTGGCTG+AGG | 0.373008 | 7.1:+36842463 | None:intergenic |
| GTTATGATTCTCAGAGGCTT+TGG | 0.379710 | 7.1:+36844084 | None:intergenic |
| AAACACCATTAGGGCTTCCT+TGG | 0.391799 | 7.1:+36843876 | None:intergenic |
| CTGTTGCACCTCCAAGGCAT+AGG | 0.394744 | 7.1:-36842537 | MS.gene89239:CDS |
| AAGGTTGTGGAGTTTGAATT+TGG | 0.400405 | 7.1:+36843375 | None:intergenic |
| CATTCTCACAAACACCATTA+GGG | 0.402675 | 7.1:+36843867 | None:intergenic |
| GTTGCATTTCTTGATTCAAC+AGG | 0.404880 | 7.1:+36843284 | None:intergenic |
| AGCGAAAGCGAAGAAGGTTT+CGG | 0.413750 | 7.1:+36844277 | None:intergenic |
| GGAAGAAACAACAACGTTGC+TGG | 0.422077 | 7.1:-36843449 | MS.gene89239:CDS |
| GCAGCAGCAACAATACCAGC+AGG | 0.436574 | 7.1:-36842486 | MS.gene89239:CDS |
| AGGGCATGCGCCACTCTAGC+TGG | 0.436782 | 7.1:+36842842 | None:intergenic |
| TCAAGCCAAGGAAGCCCTAA+TGG | 0.437674 | 7.1:-36843881 | MS.gene89239:CDS |
| CTTGGCTTGATGAAACTTTG+CGG | 0.438687 | 7.1:+36843894 | None:intergenic |
| GGGGAAGAAGAATTTCTTTG+AGG | 0.452557 | 7.1:+36843764 | None:intergenic |
| AAAGCTTGAAGACTATATAG+TGG | 0.470534 | 7.1:-36842813 | MS.gene89239:CDS |
| AGGAAAACAGCTCTCATGTA+AGG | 0.476490 | 7.1:+36843356 | None:intergenic |
| ACATTATTACCCCTATGCCT+TGG | 0.482077 | 7.1:+36842526 | None:intergenic |
| TTGAAAAGCGAAAGCGAAGA+AGG | 0.482963 | 7.1:+36844271 | None:intergenic |
| AATGGTTATGGTAGCAGCAC+TGG | 0.484581 | 7.1:-36843329 | MS.gene89239:CDS |
| GGAGGAAGAAATGTTGTTGA+TGG | 0.488016 | 7.1:-36843470 | MS.gene89239:CDS |
| TTATTACCCCTATGCCTTGG+AGG | 0.489609 | 7.1:+36842529 | None:intergenic |
| TGTTGCACCTCCAAGGCATA+GGG | 0.498023 | 7.1:-36842536 | MS.gene89239:CDS |
| TGTTGAGCATGTTGTAGTGT+TGG | 0.499882 | 7.1:+36843401 | None:intergenic |
| GTCATTTCCAAAAGCACATA+GGG | 0.503258 | 7.1:+36843925 | None:intergenic |
| TTTCAGCAAAGACAAACAAA+TGG | 0.515645 | 7.1:-36843491 | MS.gene89239:CDS |
| TGTAGCTTGTGCAACTGCAT+TGG | 0.518913 | 7.1:-36842867 | MS.gene89239:intron |
| TAGGTTTGTCATCATCTGCA+TGG | 0.523719 | 7.1:-36843424 | MS.gene89239:CDS |
| TCAGAGCAAGCGAATCCATA+AGG | 0.526705 | 7.1:+36844223 | None:intergenic |
| ACAGCTCTCATGTAAGGTTG+TGG | 0.530451 | 7.1:+36843362 | None:intergenic |
| GTCATCCAAATTCTCAGCCA+TGG | 0.531206 | 7.1:+36844366 | None:intergenic |
| TGAAAGGCTGAACACAATAA+GGG | 0.531358 | 7.1:-36843543 | MS.gene89239:CDS |
| GAATCATAACAACAATAACT+TGG | 0.540471 | 7.1:-36844071 | MS.gene89239:intron |
| AAGCTTGAAGACTATATAGT+GGG | 0.550779 | 7.1:-36842812 | MS.gene89239:CDS |
| AGTCATTTCCAAAAGCACAT+AGG | 0.552956 | 7.1:+36843924 | None:intergenic |
| TATGGTAGCAGCACTGGCAC+TGG | 0.560323 | 7.1:-36843323 | MS.gene89239:CDS |
| TAGCTGCTGTTGCACCTCCA+AGG | 0.563262 | 7.1:-36842543 | MS.gene89239:CDS |
| TGCATTGGTTCCAGCTAGAG+TGG | 0.566049 | 7.1:-36842852 | MS.gene89239:CDS |
| AAATCAAGCTTCCACAGGAG+TGG | 0.577332 | 7.1:-36842438 | MS.gene89239:CDS |
| TGTGTCATCACCGTCGTCGT+CGG | 0.577857 | 7.1:+36844312 | None:intergenic |
| CGCAAAGTTTCATCAAGCCA+AGG | 0.583888 | 7.1:-36843893 | MS.gene89239:CDS |
| TTTCTTGATTCAACAGGACG+AGG | 0.586209 | 7.1:+36843290 | None:intergenic |
| CAATGAAATCAAGCTTCCAC+AGG | 0.589243 | 7.1:-36842443 | MS.gene89239:CDS |
| TGATAATGAGAAAGTGATTG+TGG | 0.597158 | 7.1:+36843692 | None:intergenic |
| CAGAGGCTTTGGAATCAACA+AGG | 0.597475 | 7.1:+36844095 | None:intergenic |
| TTTGGAGGGTAAAGTAACAG+GGG | 0.599668 | 7.1:+36843745 | None:intergenic |
| CATCAGTACGTCCACTCCTG+TGG | 0.602987 | 7.1:+36842427 | None:intergenic |
| GATGCAAGTGTTGTTGCGGC+TGG | 0.606152 | 7.1:+36842786 | None:intergenic |
| AGGCTGAACACAATAAGGGC+GGG | 0.606490 | 7.1:-36843539 | MS.gene89239:CDS |
| CAGCAAAGACAAACAAATGG+AGG | 0.610080 | 7.1:-36843488 | MS.gene89239:CDS |
| TGCTACCATAACCATTTCCA+AGG | 0.612385 | 7.1:+36843336 | None:intergenic |
| ATTGTTGTTATGATTCTCAG+AGG | 0.625609 | 7.1:+36844078 | None:intergenic |
| TTTGGAATCAACAAGGAGAG+AGG | 0.627829 | 7.1:+36844102 | None:intergenic |
| GGCAACAACAAATTGCTGAA+AGG | 0.630304 | 7.1:-36843559 | MS.gene89239:CDS |
| GAAGCAGCAAGAGAATCGAT+TGG | 0.636063 | 7.1:+36844190 | None:intergenic |
| GGGTATGCAGAAGCAAAATG+GGG | 0.639834 | 7.1:-36843519 | MS.gene89239:CDS |
| CAGTTTCTCTCCGACGACGA+CGG | 0.644936 | 7.1:-36844322 | MS.gene89239:CDS |
| AAACGATGCAAGTGTTGTTG+CGG | 0.650274 | 7.1:+36842782 | None:intergenic |
| AAAGCACATAGGGTTGATTG+TGG | 0.656361 | 7.1:+36843935 | None:intergenic |
| ATGCAACAGATTCAAAGTAG+AGG | 0.656365 | 7.1:+36843835 | None:intergenic |
| ATGGCTGAGAATTTGGATGA+CGG | 0.669713 | 7.1:-36844364 | MS.gene89239:CDS |
| AAGGCTGAACACAATAAGGG+CGG | 0.671077 | 7.1:-36843540 | MS.gene89239:CDS |
| GGTATGCAGAAGCAAAATGG+GGG | 0.674755 | 7.1:-36843518 | MS.gene89239:CDS |
| GTTGCACCTCCAAGGCATAG+GGG | 0.686212 | 7.1:-36842535 | MS.gene89239:CDS |
| AGCTTGAAGACTATATAGTG+GGG | 0.692039 | 7.1:-36842811 | MS.gene89239:CDS |
| TCGTCGGAGAGAAACTGCGG+CGG | 0.707718 | 7.1:+36844328 | None:intergenic |
| TCGTCGTCGGAGAGAAACTG+CGG | 0.728597 | 7.1:+36844325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTTTTTTATTTTT+TGG | - | chr7.1:36842750-36842769 | MS.gene89239:intron | 0.0% |
| !! | GTTTATTTATTTAATCAAAA+GGG | - | chr7.1:36844185-36844204 | MS.gene89239:CDS | 10.0% |
| !! | TGTTTATTTATTTAATCAAA+AGG | - | chr7.1:36844184-36844203 | MS.gene89239:CDS | 10.0% |
| !! | TTTATTTATTTAATCAAAAG+GGG | - | chr7.1:36844186-36844205 | MS.gene89239:CDS | 10.0% |
| !!! | TTATTTTTTTTTTCCTTTTA+GGG | - | chr7.1:36842790-36842809 | MS.gene89239:CDS | 10.0% |
| !!! | TTTATTTTTTTTTTCCTTTT+AGG | - | chr7.1:36842789-36842808 | MS.gene89239:CDS | 10.0% |
| !! | AAATTATTAAATATCACAAC+CGG | + | chr7.1:36843830-36843849 | None:intergenic | 15.0% |
| !! | TAAACACAATTAATAAATCA+AGG | + | chr7.1:36843868-36843887 | None:intergenic | 15.0% |
| !! | TTATTTATTTAATCAAAAGG+GGG | - | chr7.1:36844187-36844206 | MS.gene89239:CDS | 15.0% |
| !!! | AAAGTAAAATCTAGTTTATA+AGG | + | chr7.1:36844143-36844162 | None:intergenic | 15.0% |
| !!! | AAATCTCGTATTTTTAATAA+TGG | - | chr7.1:36843158-36843177 | MS.gene89239:intron | 15.0% |
| !!! | AAGTAAAATCTAGTTTATAA+GGG | + | chr7.1:36844142-36844161 | None:intergenic | 15.0% |
| !!! | AATCTCGTATTTTTAATAAT+GGG | - | chr7.1:36843159-36843178 | MS.gene89239:intron | 15.0% |
| !! | AAAAAAAATAAAACCCCAAA+AGG | + | chr7.1:36842781-36842800 | None:intergenic | 20.0% |
| !!! | AATGTTTTAATGCATTTAAG+AGG | - | chr7.1:36843636-36843655 | MS.gene89239:intron | 20.0% |
| !!! | ATGTTTTAATGCATTTAAGA+GGG | - | chr7.1:36843637-36843656 | MS.gene89239:intron | 20.0% |
| !!! | ATTTTTTGGTTTTTCCTTTT+GGG | - | chr7.1:36842764-36842783 | MS.gene89239:CDS | 20.0% |
| !!! | TATTTTTTGGTTTTTCCTTT+TGG | - | chr7.1:36842763-36842782 | MS.gene89239:CDS | 20.0% |
| !!! | TTTAAAATGTTACAACACAA+TGG | - | chr7.1:36843686-36843705 | MS.gene89239:CDS | 20.0% |
| ! | AATTAACATCATCATCAACA+TGG | + | chr7.1:36843562-36843581 | None:intergenic | 25.0% |
| ! | ACAATAACCACAAGAAAAAT+TGG | + | chr7.1:36843903-36843922 | None:intergenic | 25.0% |
| ! | ATTAACATCATCATCAACAT+GGG | + | chr7.1:36843561-36843580 | None:intergenic | 25.0% |
| ! | CCTAAATCATAAACGAAAAA+CGG | + | chr7.1:36843754-36843773 | None:intergenic | 25.0% |
| ! | CTAAATCATAAACGAAAAAC+GGG | + | chr7.1:36843753-36843772 | None:intergenic | 25.0% |
| ! | GAATCATAACAACAATAACT+TGG | - | chr7.1:36842722-36842741 | MS.gene89239:intron | 25.0% |
| !! | AACTTTACCAATTTTTCTTG+TGG | - | chr7.1:36843893-36843912 | MS.gene89239:CDS | 25.0% |
| !!! | TTTTAATTGTTTTGGATGTG+TGG | - | chr7.1:36843803-36843822 | MS.gene89239:CDS | 25.0% |
| !!! | TTTTTTGGTTTTTCCTTTTG+GGG | - | chr7.1:36842765-36842784 | MS.gene89239:CDS | 25.0% |
| AAAGCTTGAAGACTATATAG+TGG | - | chr7.1:36843980-36843999 | MS.gene89239:intron | 30.0% | |
| AAGCTTGAAGACTATATAGT+GGG | - | chr7.1:36843981-36844000 | MS.gene89239:intron | 30.0% | |
| AGAAATGCAACAAAAAAACC+AGG | - | chr7.1:36843521-36843540 | MS.gene89239:CDS | 30.0% | |
| CTATATAGTCTTCAAGCTTT+AGG | + | chr7.1:36843980-36843999 | None:intergenic | 30.0% | |
| GCAAAAACGTACATTAAACA+AGG | + | chr7.1:36843777-36843796 | None:intergenic | 30.0% | |
| TTTCAGCAAAGACAAACAAA+TGG | - | chr7.1:36843302-36843321 | MS.gene89239:CDS | 30.0% | |
| ! | AGTACCATTTTCAACATTAG+AGG | + | chr7.1:36844045-36844064 | None:intergenic | 30.0% |
| ! | ATTGTTGTTATGATTCTCAG+AGG | + | chr7.1:36842718-36842737 | None:intergenic | 30.0% |
| ! | TGATAATGAGAAAGTGATTG+TGG | + | chr7.1:36843104-36843123 | None:intergenic | 30.0% |
| ! | TTAATGTACGTTTTTGCTAC+TGG | - | chr7.1:36843780-36843799 | MS.gene89239:CDS | 30.0% |
| ! | TTTTAATGCATTTAAGAGGG+TGG | - | chr7.1:36843640-36843659 | MS.gene89239:intron | 30.0% |
| !! | CCGTTTTTCGTTTATGATTT+AGG | - | chr7.1:36843751-36843770 | MS.gene89239:CDS | 30.0% |
| !!! | GCTACTGGTTTTAATTGTTT+TGG | - | chr7.1:36843795-36843814 | MS.gene89239:CDS | 30.0% |
| !!! | GTTTTTATTGTCGTTTTGCA+GGG | - | chr7.1:36842828-36842847 | MS.gene89239:CDS | 30.0% |
| !!! | TGTACGTTTTTTTGCGTTTT+TGG | - | chr7.1:36843609-36843628 | MS.gene89239:intron | 30.0% |
| AAGGTTGTGGAGTTTGAATT+TGG | + | chr7.1:36843421-36843440 | None:intergenic | 35.0% | |
| AATCCATAAGGAAAAAGCAG+AGG | + | chr7.1:36842561-36842580 | None:intergenic | 35.0% | |
| AGCTTGAAGACTATATAGTG+GGG | - | chr7.1:36843982-36844001 | MS.gene89239:intron | 35.0% | |
| ATGCAACAGATTCAAAGTAG+AGG | + | chr7.1:36842961-36842980 | None:intergenic | 35.0% | |
| CAAAAAAGCTCAAATCAGCA+GGG | + | chr7.1:36843079-36843098 | None:intergenic | 35.0% | |
| CAAAACGCAAAAACCCTAAA+AGG | + | chr7.1:36842806-36842825 | None:intergenic | 35.0% | |
| CATTCTCACAAACACCATTA+GGG | + | chr7.1:36842929-36842948 | None:intergenic | 35.0% | |
| CTGATGAAGTTGAAACTTTG+AGG | - | chr7.1:36842988-36843007 | MS.gene89239:intron | 35.0% | |
| GTTGCATTTCTTGATTCAAC+AGG | + | chr7.1:36843512-36843531 | None:intergenic | 35.0% | |
| TCCACCTCTAATGTTGAAAA+TGG | - | chr7.1:36844038-36844057 | MS.gene89239:intron | 35.0% | |
| TGAAAGGCTGAACACAATAA+GGG | - | chr7.1:36843250-36843269 | MS.gene89239:intron | 35.0% | |
| TGGGAAAAAAACTAATCACC+TGG | + | chr7.1:36843542-36843561 | None:intergenic | 35.0% | |
| ! | ACCATTTTCAACATTAGAGG+TGG | + | chr7.1:36844042-36844061 | None:intergenic | 35.0% |
| ! | AGTCATTTCCAAAAGCACAT+AGG | + | chr7.1:36842872-36842891 | None:intergenic | 35.0% |
| ! | GTCATTTCCAAAAGCACATA+GGG | + | chr7.1:36842871-36842890 | None:intergenic | 35.0% |
| ! | GTTTTCCTTGGAAATGGTTA+TGG | - | chr7.1:36843452-36843471 | MS.gene89239:CDS | 35.0% |
| !! | AGTCTTCAAGCTTTAGGTTA+AGG | + | chr7.1:36843974-36843993 | None:intergenic | 35.0% |
| !! | GTCTTCAAGCTTTAGGTTAA+GGG | + | chr7.1:36843973-36843992 | None:intergenic | 35.0% |
| !! | TTTTGGAGGGTAAAGTAACA+GGG | + | chr7.1:36843052-36843071 | None:intergenic | 35.0% |
| !! | TTTTTGGAGGGTAAAGTAAC+AGG | + | chr7.1:36843053-36843072 | None:intergenic | 35.0% |
| !!! | CAAATCAGCAGGGTTTTTTT+TGG | + | chr7.1:36843069-36843088 | None:intergenic | 35.0% |
| !!! | CGTTTTTATTGTCGTTTTGC+AGG | - | chr7.1:36842827-36842846 | MS.gene89239:CDS | 35.0% |
| !!! | GATTTTAGTTGCAGAGGATT+AGG | - | chr7.1:36843213-36843232 | MS.gene89239:intron | 35.0% |
| !!! | GTTGATGATTTTAGTTGCAG+AGG | - | chr7.1:36843207-36843226 | MS.gene89239:intron | 35.0% |
| ACATTATTACCCCTATGCCT+TGG | + | chr7.1:36844270-36844289 | None:intergenic | 40.0% | |
| AGGAAAACAGCTCTCATGTA+AGG | + | chr7.1:36843440-36843459 | None:intergenic | 40.0% | |
| ATGGCTGAGAATTTGGATGA+CGG | - | chr7.1:36842429-36842448 | MS.gene89239:CDS | 40.0% | |
| CAATGAAATCAAGCTTCCAC+AGG | - | chr7.1:36844350-36844369 | MS.gene89239:CDS | 40.0% | |
| CAGCAAAGACAAACAAATGG+AGG | - | chr7.1:36843305-36843324 | MS.gene89239:CDS | 40.0% | |
| CTGAAAGGCTGAACACAATA+AGG | - | chr7.1:36843249-36843268 | MS.gene89239:intron | 40.0% | |
| GCAAAAAAGCTCAAATCAGC+AGG | + | chr7.1:36843080-36843099 | None:intergenic | 40.0% | |
| GCATTCTCACAAACACCATT+AGG | + | chr7.1:36842930-36842949 | None:intergenic | 40.0% | |
| GGAGGAAGAAATGTTGTTGA+TGG | - | chr7.1:36843323-36843342 | MS.gene89239:CDS | 40.0% | |
| GGCAACAACAAATTGCTGAA+AGG | - | chr7.1:36843234-36843253 | MS.gene89239:intron | 40.0% | |
| GGGGAAGAAGAATTTCTTTG+AGG | + | chr7.1:36843032-36843051 | None:intergenic | 40.0% | |
| GTTATGATTCTCAGAGGCTT+TGG | + | chr7.1:36842712-36842731 | None:intergenic | 40.0% | |
| TAGGTTTGTCATCATCTGCA+TGG | - | chr7.1:36843369-36843388 | MS.gene89239:CDS | 40.0% | |
| TGATGAAACTTTGCGGCATT+TGG | + | chr7.1:36842895-36842914 | None:intergenic | 40.0% | |
| TGCTACCATAACCATTTCCA+AGG | + | chr7.1:36843460-36843479 | None:intergenic | 40.0% | |
| TGTTGAGCATGTTGTAGTGT+TGG | + | chr7.1:36843395-36843414 | None:intergenic | 40.0% | |
| TTGAAAAGCGAAAGCGAAGA+AGG | + | chr7.1:36842525-36842544 | None:intergenic | 40.0% | |
| TTTCTTGATTCAACAGGACG+AGG | + | chr7.1:36843506-36843525 | None:intergenic | 40.0% | |
| TTTGGAGGGTAAAGTAACAG+GGG | + | chr7.1:36843051-36843070 | None:intergenic | 40.0% | |
| ! | AAACGATGCAAGTGTTGTTG+CGG | + | chr7.1:36844014-36844033 | None:intergenic | 40.0% |
| ! | AAAGCACATAGGGTTGATTG+TGG | + | chr7.1:36842861-36842880 | None:intergenic | 40.0% |
| ! | CAATCAACCCTATGTGCTTT+TGG | - | chr7.1:36842861-36842880 | MS.gene89239:CDS | 40.0% |
| ! | CTTGGCTTGATGAAACTTTG+CGG | + | chr7.1:36842902-36842921 | None:intergenic | 40.0% |
| ! | TTTGGAATCAACAAGGAGAG+AGG | + | chr7.1:36842694-36842713 | None:intergenic | 40.0% |
| !! | AACAACAACGTTGCTGGTTT+AGG | - | chr7.1:36843350-36843369 | MS.gene89239:CDS | 40.0% |
| !! | AGAGCTGTTTTCCTTGGAAA+TGG | - | chr7.1:36843446-36843465 | MS.gene89239:CDS | 40.0% |
| !! | TACATGAGAGCTGTTTTCCT+TGG | - | chr7.1:36843440-36843459 | MS.gene89239:CDS | 40.0% |
| !! | TCGCTTTCGCTTTTCAACAA+TGG | - | chr7.1:36842528-36842547 | MS.gene89239:CDS | 40.0% |
| !!! | ATCAGCAGGGTTTTTTTTGG+AGG | + | chr7.1:36843066-36843085 | None:intergenic | 40.0% |
| !!! | ATTGTTTTGGATGTGTGGAC+CGG | - | chr7.1:36843808-36843827 | MS.gene89239:CDS | 40.0% |
| !!! | GATCCTCTGCTTTTTCCTTA+TGG | - | chr7.1:36842555-36842574 | MS.gene89239:intron | 40.0% |
| !!! | TCAGCAGGGTTTTTTTTGGA+GGG | + | chr7.1:36843065-36843084 | None:intergenic | 40.0% |
| !!! | TTTATTGTCGTTTTGCAGGG+AGG | - | chr7.1:36842831-36842850 | MS.gene89239:CDS | 40.0% |
| AAACACCATTAGGGCTTCCT+TGG | + | chr7.1:36842920-36842939 | None:intergenic | 45.0% | |
| AAATCAAGCTTCCACAGGAG+TGG | - | chr7.1:36844355-36844374 | MS.gene89239:CDS | 45.0% | |
| AAGGCTGAACACAATAAGGG+CGG | - | chr7.1:36843253-36843272 | MS.gene89239:intron | 45.0% | |
| AATGGTTATGGTAGCAGCAC+TGG | - | chr7.1:36843464-36843483 | MS.gene89239:CDS | 45.0% | |
| ACAGCTCTCATGTAAGGTTG+TGG | + | chr7.1:36843434-36843453 | None:intergenic | 45.0% | |
| AGCGAAAGCGAAGAAGGTTT+CGG | + | chr7.1:36842519-36842538 | None:intergenic | 45.0% | |
| ATTTCATTGCTCACTGCTGC+TGG | + | chr7.1:36844339-36844358 | None:intergenic | 45.0% | |
| CGCAAAGTTTCATCAAGCCA+AGG | - | chr7.1:36842900-36842919 | MS.gene89239:intron | 45.0% | |
| CGGGTATGCAGAAGCAAAAT+GGG | - | chr7.1:36843273-36843292 | MS.gene89239:CDS | 45.0% | |
| GAAGCAGCAAGAGAATCGAT+TGG | + | chr7.1:36842606-36842625 | None:intergenic | 45.0% | |
| GGAAGAAACAACAACGTTGC+TGG | - | chr7.1:36843344-36843363 | MS.gene89239:CDS | 45.0% | |
| GGGTATGCAGAAGCAAAATG+GGG | - | chr7.1:36843274-36843293 | MS.gene89239:CDS | 45.0% | |
| GGTATGCAGAAGCAAAATGG+GGG | - | chr7.1:36843275-36843294 | MS.gene89239:CDS | 45.0% | |
| TCAGAGCAAGCGAATCCATA+AGG | + | chr7.1:36842573-36842592 | None:intergenic | 45.0% | |
| TTATTACCCCTATGCCTTGG+AGG | + | chr7.1:36844267-36844286 | None:intergenic | 45.0% | |
| ! | ATTTGGATGACGGTGAGTTC+TGG | - | chr7.1:36842439-36842458 | MS.gene89239:CDS | 45.0% |
| ! | CGAAGAAGGTTTCGGTTTTG+TGG | + | chr7.1:36842511-36842530 | None:intergenic | 45.0% |
| ! | TGTAGCTTGTGCAACTGCAT+TGG | - | chr7.1:36843926-36843945 | MS.gene89239:CDS | 45.0% |
| !! | AGAAGGTTTCGGTTTTGTGG+TGG | + | chr7.1:36842508-36842527 | None:intergenic | 45.0% |
| !! | CAGAGGCTTTGGAATCAACA+AGG | + | chr7.1:36842701-36842720 | None:intergenic | 45.0% |
| AGGCTGAACACAATAAGGGC+GGG | - | chr7.1:36843254-36843273 | MS.gene89239:intron | 50.0% | |
| GCGGGTATGCAGAAGCAAAA+TGG | - | chr7.1:36843272-36843291 | MS.gene89239:intron | 50.0% | |
| TCAAGCCAAGGAAGCCCTAA+TGG | - | chr7.1:36842912-36842931 | MS.gene89239:intron | 50.0% | |
| TGTTGCACCTCCAAGGCATA+GGG | - | chr7.1:36844257-36844276 | MS.gene89239:CDS | 50.0% | |
| !! | TGCATTGGTTCCAGCTAGAG+TGG | - | chr7.1:36843941-36843960 | MS.gene89239:CDS | 50.0% |
| CAGTTTCTCTCCGACGACGA+CGG | - | chr7.1:36842471-36842490 | MS.gene89239:CDS | 55.0% | |
| CTGTTGCACCTCCAAGGCAT+AGG | - | chr7.1:36844256-36844275 | MS.gene89239:CDS | 55.0% | |
| GCAGCAGCAACAATACCAGC+AGG | - | chr7.1:36844307-36844326 | MS.gene89239:CDS | 55.0% | |
| GTTGCACCTCCAAGGCATAG+GGG | - | chr7.1:36844258-36844277 | MS.gene89239:CDS | 55.0% | |
| TAGCTGCTGTTGCACCTCCA+AGG | - | chr7.1:36844250-36844269 | MS.gene89239:CDS | 55.0% | |
| TCGTCGTCGGAGAGAAACTG+CGG | + | chr7.1:36842471-36842490 | None:intergenic | 55.0% | |
| TGTGTCATCACCGTCGTCGT+CGG | + | chr7.1:36842484-36842503 | None:intergenic | 55.0% | |
| ! | GATGCAAGTGTTGTTGCGGC+TGG | + | chr7.1:36844010-36844029 | None:intergenic | 55.0% |
| !! | TATGGTAGCAGCACTGGCAC+TGG | - | chr7.1:36843470-36843489 | MS.gene89239:CDS | 55.0% |
| TCGTCGGAGAGAAACTGCGG+CGG | + | chr7.1:36842468-36842487 | None:intergenic | 60.0% | |
| ! | TTGCTCACTGCTGCTGGCTG+AGG | + | chr7.1:36844333-36844352 | None:intergenic | 60.0% |
| AGGGCATGCGCCACTCTAGC+TGG | + | chr7.1:36843954-36843973 | None:intergenic | 65.0% | |
| ! | TGCTGCTGGCTGAGGCCTGC+TGG | + | chr7.1:36844325-36844344 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 36842429 | 36844386 | 36842429 | ID=MS.gene89239 |
| chr7.1 | mRNA | 36842429 | 36844386 | 36842429 | ID=MS.gene89239.t1;Parent=MS.gene89239 |
| chr7.1 | exon | 36844072 | 36844386 | 36844072 | ID=MS.gene89239.t1.exon1;Parent=MS.gene89239.t1 |
| chr7.1 | CDS | 36844072 | 36844386 | 36844072 | ID=cds.MS.gene89239.t1;Parent=MS.gene89239.t1 |
| chr7.1 | exon | 36843676 | 36843966 | 36843676 | ID=MS.gene89239.t1.exon2;Parent=MS.gene89239.t1 |
| chr7.1 | CDS | 36843676 | 36843966 | 36843676 | ID=cds.MS.gene89239.t1;Parent=MS.gene89239.t1 |
| chr7.1 | exon | 36843273 | 36843594 | 36843273 | ID=MS.gene89239.t1.exon3;Parent=MS.gene89239.t1 |
| chr7.1 | CDS | 36843273 | 36843594 | 36843273 | ID=cds.MS.gene89239.t1;Parent=MS.gene89239.t1 |
| chr7.1 | exon | 36842756 | 36842884 | 36842756 | ID=MS.gene89239.t1.exon4;Parent=MS.gene89239.t1 |
| chr7.1 | CDS | 36842756 | 36842884 | 36842756 | ID=cds.MS.gene89239.t1;Parent=MS.gene89239.t1 |
| chr7.1 | exon | 36842429 | 36842565 | 36842429 | ID=MS.gene89239.t1.exon5;Parent=MS.gene89239.t1 |
| chr7.1 | CDS | 36842429 | 36842565 | 36842429 | ID=cds.MS.gene89239.t1;Parent=MS.gene89239.t1 |
| Gene Sequence |
| Protein sequence |
