Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055134.t1 | XP_013443248.1 | 78.5 | 409 | 62 | 9 | 1 | 402 | 1 | 390 | 4.50E-157 | 564.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055134.t1 | A0A072TK54 | 78.5 | 409 | 62 | 9 | 1 | 402 | 1 | 390 | 3.3e-157 | 564.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene055134 | -0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene055134 | -0.808559 | 2.92E-50 | -1.69E-46 |
| MS.gene051949 | MS.gene055134 | -0.807747 | 4.35E-50 | -1.69E-46 |
| MS.gene054555 | MS.gene055134 | 0.811753 | 5.98E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene055748 | -0.813486 | 2.50E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene055751 | -0.82712 | 1.86E-54 | -1.69E-46 |
| MS.gene055134 | MS.gene055776 | -0.80634 | 8.63E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene059677 | -0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene060762 | -0.805939 | 1.05E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene064862 | -0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene066054 | -0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene066358 | 0.820034 | 8.49E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene066359 | 0.809091 | 2.25E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene067479 | -0.800665 | 1.30E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene069995 | -0.816787 | 4.62E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene070118 | 0.812128 | 4.95E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene071525 | -0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene071528 | -0.816748 | 4.71E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene072496 | -0.806491 | 8.02E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene073565 | -0.825948 | 3.55E-54 | -1.69E-46 |
| MS.gene055134 | MS.gene074566 | -0.804926 | 1.71E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene22245 | -0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene22670 | -0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene22826 | -0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene23115 | -0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene23914 | -0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene26384 | -0.805512 | 1.29E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene26385 | -0.808699 | 2.72E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene26662 | -0.806044 | 9.96E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene27047 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene31552 | -0.81321 | 2.87E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene32026 | -0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene37999 | -0.813814 | 2.12E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene38118 | 0.820912 | 5.34E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene38250 | -0.802007 | 6.88E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene38252 | -0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene38328 | -0.800049 | 1.73E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene38348 | -0.816786 | 4.62E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene41636 | -0.812456 | 4.20E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene42636 | -0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene44913 | -0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene46040 | 0.84737 | 1.21E-59 | -1.69E-46 |
| MS.gene055134 | MS.gene51150 | -0.813083 | 3.06E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene51168 | -0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene51927 | -0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene52171 | -0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene52287 | -0.805035 | 1.62E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene53614 | -0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene55899 | 0.817814 | 2.71E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene57034 | -0.800597 | 1.34E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene57132 | -0.831046 | 2.08E-55 | -1.69E-46 |
| MS.gene055134 | MS.gene58466 | -0.816865 | 4.44E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene63996 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene64340 | 0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene65434 | 0.819059 | 1.42E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene67885 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene68071 | -0.817474 | 3.24E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene68120 | -0.801343 | 9.42E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene68124 | -0.841524 | 4.51E-58 | -1.69E-46 |
| MS.gene055134 | MS.gene68126 | -0.832399 | 9.67E-56 | -1.69E-46 |
| MS.gene055134 | MS.gene68200 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene68725 | -0.813864 | 2.06E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene72999 | -0.815017 | 1.15E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene74655 | -0.821208 | 4.56E-53 | -1.69E-46 |
| MS.gene055134 | MS.gene75689 | -0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene76418 | -0.831623 | 1.50E-55 | -1.69E-46 |
| MS.gene055134 | MS.gene77492 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene78574 | -0.811397 | 7.15E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene78942 | -0.800606 | 1.33E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene79856 | 0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene79878 | -0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene80804 | -0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene81275 | -0.814964 | 1.18E-51 | -1.69E-46 |
| MS.gene055134 | MS.gene82401 | -0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene83606 | -0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene055134 | MS.gene84559 | 0.81061 | 1.06E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene89239 | 0.818789 | 1.63E-52 | -1.69E-46 |
| MS.gene055134 | MS.gene90364 | -0.801593 | 8.37E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene90576 | -0.80126 | 9.79E-49 | -1.69E-46 |
| MS.gene055134 | MS.gene92216 | -0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene055134 | MS.gene94986 | -0.827929 | 1.19E-54 | -1.69E-46 |
| MS.gene055134 | MS.gene94987 | -0.831661 | 1.47E-55 | -1.69E-46 |
| MS.gene055134 | MS.gene97726 | -0.808077 | 3.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055134.t1 | MTR_0027s0090 | 85.086 | 409 | 35 | 9 | 1 | 402 | 1 | 390 | 0.0 | 628 |
| MS.gene055134.t1 | MTR_4g019840 | 28.571 | 406 | 170 | 19 | 12 | 402 | 5 | 305 | 6.91e-20 | 89.7 |
| MS.gene055134.t1 | MTR_5g081460 | 30.670 | 388 | 197 | 17 | 44 | 402 | 18 | 362 | 5.76e-15 | 76.3 |
| MS.gene055134.t1 | MTR_2g097800 | 38.583 | 127 | 54 | 5 | 281 | 402 | 214 | 321 | 2.27e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055134.t1 | AT3G54000 | 29.540 | 413 | 208 | 20 | 5 | 402 | 8 | 352 | 2.73e-19 | 89.0 |
| MS.gene055134.t1 | AT3G54000 | 31.105 | 344 | 174 | 17 | 5 | 333 | 8 | 303 | 9.72e-19 | 86.7 |
| MS.gene055134.t1 | AT3G54000 | 28.228 | 333 | 179 | 15 | 5 | 325 | 8 | 292 | 3.36e-12 | 67.4 |
Find 79 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAGTCTTCAAGCTTT+AGG | 0.234041 | 7.4:+39217466 | None:intergenic |
| CAATCAACCCTATGTGCTTT+TGG | 0.244653 | 7.4:-39218610 | MS.gene055134:CDS |
| GTCTTCAAGCTTTAGGTTAA+GGG | 0.268229 | 7.4:+39217473 | None:intergenic |
| CTGAAAGGCTGAACACAATA+AGG | 0.279562 | 7.4:-39218222 | MS.gene055134:CDS |
| TGATGAAACTTTGCGGCATT+TGG | 0.289924 | 7.4:+39218579 | None:intergenic |
| TCCACCTCTAATGTTGAAAA+TGG | 0.300073 | 7.4:-39217405 | MS.gene055134:intron |
| GCGGGTATGCAGAAGCAAAA+TGG | 0.310089 | 7.4:-39218199 | MS.gene055134:CDS |
| AGTCTTCAAGCTTTAGGTTA+AGG | 0.313871 | 7.4:+39217472 | None:intergenic |
| TGCTGCTGGCTGAGGCCTGC+TGG | 0.319876 | 7.4:+39217149 | None:intergenic |
| AACAACAACGTTGCTGGTTT+AGG | 0.336273 | 7.4:-39218106 | MS.gene055134:CDS |
| GCATTCTCACAAACACCATT+AGG | 0.337817 | 7.4:+39218544 | None:intergenic |
| ATTTGGATGACGGTGAGTTC+TGG | 0.349881 | 7.4:-39219034 | MS.gene055134:CDS |
| ATTTCATTGCTCACTGCTGC+TGG | 0.359817 | 7.4:+39217135 | None:intergenic |
| AGGGTTGTGGAGTTTGAATT+TGG | 0.367866 | 7.4:+39218038 | None:intergenic |
| CGGGTATGCAGAAGCAAAAT+GGG | 0.371790 | 7.4:-39218198 | MS.gene055134:CDS |
| TTGCTCACTGCTGCTGGCTG+AGG | 0.373008 | 7.4:+39217141 | None:intergenic |
| GTTATGATTCTCAGAGGCTT+TGG | 0.379710 | 7.4:+39218764 | None:intergenic |
| AAACACCATTAGGGCTTCCT+TGG | 0.391799 | 7.4:+39218554 | None:intergenic |
| CTGTTGCACCTCCAAGGCAT+AGG | 0.394744 | 7.4:-39217215 | MS.gene055134:CDS |
| GTTGAATTTCTTGATTCAAC+AGG | 0.398365 | 7.4:+39217947 | None:intergenic |
| CATTCTCACAAACACCATTA+GGG | 0.402675 | 7.4:+39218545 | None:intergenic |
| AGCGAAAGCGAAGAAGGTTT+CGG | 0.413750 | 7.4:+39218957 | None:intergenic |
| AATGGTTATGGTAGCAGTAC+TGG | 0.435118 | 7.4:-39217992 | MS.gene055134:CDS |
| GCAGCAGCAACAATACCAGC+AGG | 0.436574 | 7.4:-39217164 | MS.gene055134:CDS |
| AGGGCATGCGCCACTCTAGC+TGG | 0.436782 | 7.4:+39217492 | None:intergenic |
| TCAAGCCAAGGAAGCCCTAA+TGG | 0.437674 | 7.4:-39218559 | MS.gene055134:CDS |
| CTTGGCTTGATGAAACTTTG+CGG | 0.438687 | 7.4:+39218572 | None:intergenic |
| GGGGAAGAAGAATTTCTTTG+AGG | 0.452557 | 7.4:+39218442 | None:intergenic |
| AAAGCTTGAAGACTATATAG+TGG | 0.470534 | 7.4:-39217463 | MS.gene055134:CDS |
| ACATTATTACCCCTATGCCT+TGG | 0.482077 | 7.4:+39217204 | None:intergenic |
| TTGAAAAGCGAAAGCGAAGA+AGG | 0.482963 | 7.4:+39218951 | None:intergenic |
| GGAGGAAGAAATGTTGTTGA+TGG | 0.488016 | 7.4:-39218148 | MS.gene055134:CDS |
| TTATTACCCCTATGCCTTGG+AGG | 0.489609 | 7.4:+39217207 | None:intergenic |
| TGTTGCACCTCCAAGGCATA+GGG | 0.498023 | 7.4:-39217214 | MS.gene055134:CDS |
| TGTTGAGCATGTTGTAGTGT+TGG | 0.499882 | 7.4:+39218064 | None:intergenic |
| GTCATTTCCAAAAGCACATA+GGG | 0.503258 | 7.4:+39218603 | None:intergenic |
| TTTCAGCAAAGACAAACAAA+TGG | 0.515645 | 7.4:-39218169 | MS.gene055134:CDS |
| TAGGTTTGTCATCATCTGCA+TGG | 0.523719 | 7.4:-39218087 | MS.gene055134:CDS |
| ACAGCTCTCATGTAGGGTTG+TGG | 0.529286 | 7.4:+39218025 | None:intergenic |
| GTCATCCAAATTCTCAGCCA+TGG | 0.531206 | 7.4:+39219046 | None:intergenic |
| TGAAAGGCTGAACACAATAA+GGG | 0.531358 | 7.4:-39218221 | MS.gene055134:CDS |
| TCAGAGCCAGCGAATCCATA+AGG | 0.533526 | 7.4:+39218903 | None:intergenic |
| GAATCATAACAACAATAACT+TGG | 0.540471 | 7.4:-39218751 | MS.gene055134:intron |
| TGCATTTGTTCCAGCTAGAG+TGG | 0.546208 | 7.4:-39217502 | MS.gene055134:CDS |
| AAGCTTGAAGACTATATAGT+GGG | 0.550779 | 7.4:-39217462 | MS.gene055134:CDS |
| AGTCATTTCCAAAAGCACAT+AGG | 0.552956 | 7.4:+39218602 | None:intergenic |
| AGGAAAACAGCTCTCATGTA+GGG | 0.560500 | 7.4:+39218019 | None:intergenic |
| CAGAGGCTTTGGAATCAACA+TGG | 0.562511 | 7.4:+39218775 | None:intergenic |
| TAGCTGCTGTTGCACCTCCA+AGG | 0.563262 | 7.4:-39217221 | MS.gene055134:CDS |
| AAGGAAAACAGCTCTCATGT+AGG | 0.567572 | 7.4:+39218018 | None:intergenic |
| TTTCTTGATTCAACAGGACG+AGG | 0.572592 | 7.4:+39217953 | None:intergenic |
| AAATCAAGCTTCCACAGGAG+TGG | 0.577332 | 7.4:-39217116 | MS.gene055134:CDS |
| TGTGTCATCACCGTCGTCGT+CGG | 0.577857 | 7.4:+39218992 | None:intergenic |
| CGCAAAGTTTCATCAAGCCA+AGG | 0.583888 | 7.4:-39218571 | MS.gene055134:CDS |
| CAATGAAATCAAGCTTCCAC+AGG | 0.589243 | 7.4:-39217121 | MS.gene055134:CDS |
| TGATAATGAGAAAGTGATTG+TGG | 0.597158 | 7.4:+39218370 | None:intergenic |
| TATGGTAGCAGTACTGGCAC+TGG | 0.599660 | 7.4:-39217986 | MS.gene055134:CDS |
| CATCAGTACGTCCACTCCTG+TGG | 0.602987 | 7.4:+39217105 | None:intergenic |
| GATGCAAGTGTTGTTGCGGC+TGG | 0.606152 | 7.4:+39217436 | None:intergenic |
| AGGCTGAACACAATAAGGGC+GGG | 0.606490 | 7.4:-39218217 | MS.gene055134:CDS |
| CAGCAAAGACAAACAAATGG+AGG | 0.610080 | 7.4:-39218166 | MS.gene055134:CDS |
| ATTGTTGTTATGATTCTCAG+AGG | 0.625609 | 7.4:+39218758 | None:intergenic |
| TTTGGAATCAACATGGAGAG+AGG | 0.627829 | 7.4:+39218782 | None:intergenic |
| GGCAACAACAAATTGCTGAA+AGG | 0.630304 | 7.4:-39218237 | MS.gene055134:CDS |
| GAAGCAGCAAGAGAATCGAT+TGG | 0.636063 | 7.4:+39218870 | None:intergenic |
| TTTGGAAGGTAAAGTAACAG+GGG | 0.638650 | 7.4:+39218423 | None:intergenic |
| GGGTATGCAGAAGCAAAATG+GGG | 0.639834 | 7.4:-39218197 | MS.gene055134:CDS |
| CAGTTTCTCTCCGACGACGA+CGG | 0.644936 | 7.4:-39219002 | MS.gene055134:CDS |
| AAACGATGCAAGTGTTGTTG+CGG | 0.650274 | 7.4:+39217432 | None:intergenic |
| TGCTACCATAACCATTACCA+AGG | 0.652239 | 7.4:+39217999 | None:intergenic |
| AAAGCACATAGGGTTGATTG+TGG | 0.656361 | 7.4:+39218613 | None:intergenic |
| ATGCAACAGATTCAAAGTAG+AGG | 0.656365 | 7.4:+39218513 | None:intergenic |
| ATGGCTGAGAATTTGGATGA+CGG | 0.669713 | 7.4:-39219044 | MS.gene055134:CDS |
| AAGGCTGAACACAATAAGGG+CGG | 0.671077 | 7.4:-39218218 | MS.gene055134:CDS |
| GGTATGCAGAAGCAAAATGG+GGG | 0.674755 | 7.4:-39218196 | MS.gene055134:CDS |
| GTTGCACCTCCAAGGCATAG+GGG | 0.686212 | 7.4:-39217213 | MS.gene055134:CDS |
| AGCTTGAAGACTATATAGTG+GGG | 0.692039 | 7.4:-39217461 | MS.gene055134:CDS |
| TCGTCGGAGAGAAACTGCGG+CGG | 0.707718 | 7.4:+39219008 | None:intergenic |
| TCGTCGTCGGAGAGAAACTG+CGG | 0.728597 | 7.4:+39219005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTATTTTTT+TGG | - | chr7.4:39217430-39217449 | MS.gene055134:CDS | 0.0% |
| !! | ATAAACTGTATTTATTTATT+TGG | - | chr7.4:39218842-39218861 | MS.gene055134:CDS | 10.0% |
| !! | ATAAATAAATACAGTTTATA+AGG | + | chr7.4:39218841-39218860 | None:intergenic | 10.0% |
| !! | TAAACTGTATTTATTTATTT+GGG | - | chr7.4:39218843-39218862 | MS.gene055134:CDS | 10.0% |
| !! | TAAATAAATACAGTTTATAA+GGG | + | chr7.4:39218840-39218859 | None:intergenic | 10.0% |
| !!! | TTATATATTTTTTCCTTTTA+GGG | - | chr7.4:39217470-39217489 | MS.gene055134:CDS | 10.0% |
| !!! | TTTATATATTTTTTCCTTTT+AGG | - | chr7.4:39217469-39217488 | MS.gene055134:CDS | 10.0% |
| !! | AAACTGTATTTATTTATTTG+GGG | - | chr7.4:39218844-39218863 | MS.gene055134:CDS | 15.0% |
| !! | AAATTATTAAATATCACAAC+CGG | + | chr7.4:39218521-39218540 | None:intergenic | 15.0% |
| !!! | AAATCTCGTATTTTTAATAA+TGG | - | chr7.4:39217838-39217857 | MS.gene055134:intron | 15.0% |
| !!! | AATCTCGTATTTTTAATAAT+GGG | - | chr7.4:39217839-39217858 | MS.gene055134:intron | 15.0% |
| !! | AAAATATATAAAACCCCAAA+AGG | + | chr7.4:39217461-39217480 | None:intergenic | 20.0% |
| !! | AAAATTAACATCATCATCAT+GGG | + | chr7.4:39218255-39218274 | None:intergenic | 20.0% |
| !! | AACTGTATTTATTTATTTGG+GGG | - | chr7.4:39218845-39218864 | MS.gene055134:CDS | 20.0% |
| !! | ACAAAAACCACAAAAAAAAT+TGG | + | chr7.4:39218611-39218630 | None:intergenic | 20.0% |
| !!! | AACTTTACCAATTTTTTTTG+TGG | - | chr7.4:39218601-39218620 | MS.gene055134:CDS | 20.0% |
| !!! | AATGTTTTAATGCATTTAAG+AGG | - | chr7.4:39218327-39218346 | MS.gene055134:intron | 20.0% |
| !!! | ATGTTTTAATGCATTTAAGA+GGG | - | chr7.4:39218328-39218347 | MS.gene055134:intron | 20.0% |
| !!! | ATTTTTTTGGTTTTTCCTTT+TGG | - | chr7.4:39217443-39217462 | MS.gene055134:CDS | 20.0% |
| !!! | TTTAAAATGTTACAACACAA+TGG | - | chr7.4:39218377-39218396 | MS.gene055134:CDS | 20.0% |
| !!! | TTTTAATTGTTTTGAATGTG+TGG | - | chr7.4:39218494-39218513 | MS.gene055134:CDS | 20.0% |
| !!! | TTTTTTTGGTTTTTCCTTTT+GGG | - | chr7.4:39217444-39217463 | MS.gene055134:CDS | 20.0% |
| ! | ACTGTATTTATTTATTTGGG+GGG | - | chr7.4:39218846-39218865 | MS.gene055134:CDS | 25.0% |
| ! | AGAAATTCAACAAAAAAACC+AGG | - | chr7.4:39218216-39218235 | MS.gene055134:CDS | 25.0% |
| ! | CAAAATTAACATCATCATCA+TGG | + | chr7.4:39218256-39218275 | None:intergenic | 25.0% |
| ! | CCTAAATCATAAACGAAAAA+CGG | + | chr7.4:39218445-39218464 | None:intergenic | 25.0% |
| ! | CTAAATCATAAACGAAAAAC+GGG | + | chr7.4:39218444-39218463 | None:intergenic | 25.0% |
| ! | GAATCATAACAACAATAACT+TGG | - | chr7.4:39217400-39217419 | MS.gene055134:intron | 25.0% |
| !!! | TTTTTTGGTTTTTCCTTTTG+GGG | - | chr7.4:39217445-39217464 | MS.gene055134:CDS | 25.0% |
| AAAGCTTGAAGACTATATAG+TGG | - | chr7.4:39218688-39218707 | MS.gene055134:intron | 30.0% | |
| AAGCTTGAAGACTATATAGT+GGG | - | chr7.4:39218689-39218708 | MS.gene055134:intron | 30.0% | |
| CTATATAGTCTTCAAGCTTT+AGG | + | chr7.4:39218688-39218707 | None:intergenic | 30.0% | |
| GGGGGTTTATTTAATCAAAA+GGG | - | chr7.4:39218864-39218883 | MS.gene055134:CDS | 30.0% | |
| GGGGTTTATTTAATCAAAAG+GGG | - | chr7.4:39218865-39218884 | MS.gene055134:CDS | 30.0% | |
| GGGTTTATTTAATCAAAAGG+GGG | - | chr7.4:39218866-39218885 | MS.gene055134:CDS | 30.0% | |
| GGTTTATTTAATCAAAAGGG+GGG | - | chr7.4:39218867-39218886 | MS.gene055134:CDS | 30.0% | |
| GTTGAATTTCTTGATTCAAC+AGG | + | chr7.4:39218207-39218226 | None:intergenic | 30.0% | |
| TTTCAGCAAAGACAAACAAA+TGG | - | chr7.4:39217982-39218001 | MS.gene055134:CDS | 30.0% | |
| ! | AGTACCATTTTCAACATTAG+AGG | + | chr7.4:39218753-39218772 | None:intergenic | 30.0% |
| ! | ATTGTTGTTATGATTCTCAG+AGG | + | chr7.4:39217396-39217415 | None:intergenic | 30.0% |
| ! | TGATAATGAGAAAGTGATTG+TGG | + | chr7.4:39217784-39217803 | None:intergenic | 30.0% |
| ! | TTAATGTACGTTTTTGCTAC+TGG | - | chr7.4:39218471-39218490 | MS.gene055134:CDS | 30.0% |
| ! | TTTTAATGCATTTAAGAGGG+TGG | - | chr7.4:39218331-39218350 | MS.gene055134:intron | 30.0% |
| !! | CCGTTTTTCGTTTATGATTT+AGG | - | chr7.4:39218442-39218461 | MS.gene055134:CDS | 30.0% |
| !! | TTTTGGAAGGTAAAGTAACA+GGG | + | chr7.4:39217732-39217751 | None:intergenic | 30.0% |
| !! | TTTTTGGAAGGTAAAGTAAC+AGG | + | chr7.4:39217733-39217752 | None:intergenic | 30.0% |
| !!! | GTTTTTATTGTCGTTTTGCA+GGG | - | chr7.4:39217508-39217527 | MS.gene055134:CDS | 30.0% |
| !!! | TGTACGTTTTTTTGCGTTTT+TGG | - | chr7.4:39218300-39218319 | MS.gene055134:intron | 30.0% |
| AATCCATAAGGAAAAAGCAG+AGG | + | chr7.4:39217239-39217258 | None:intergenic | 35.0% | |
| AGCTTGAAGACTATATAGTG+GGG | - | chr7.4:39218690-39218709 | MS.gene055134:intron | 35.0% | |
| ATGCAACAGATTCAAAGTAG+AGG | + | chr7.4:39217641-39217660 | None:intergenic | 35.0% | |
| ATGGGAAAAAAGTAATCACC+TGG | + | chr7.4:39218237-39218256 | None:intergenic | 35.0% | |
| CAAAAAAGCTCAAATCAGCA+GGG | + | chr7.4:39217759-39217778 | None:intergenic | 35.0% | |
| CAAAACGCAAAAACCCTAAA+AGG | + | chr7.4:39217486-39217505 | None:intergenic | 35.0% | |
| CATTCTCACAAACACCATTA+GGG | + | chr7.4:39217609-39217628 | None:intergenic | 35.0% | |
| GGGGGGTTTATTTAATCAAA+AGG | - | chr7.4:39218863-39218882 | MS.gene055134:CDS | 35.0% | |
| TCCACCTCTAATGTTGAAAA+TGG | - | chr7.4:39218746-39218765 | MS.gene055134:intron | 35.0% | |
| TGAAAGGCTGAACACAATAA+GGG | - | chr7.4:39217930-39217949 | MS.gene055134:intron | 35.0% | |
| TTTGGAAGGTAAAGTAACAG+GGG | + | chr7.4:39217731-39217750 | None:intergenic | 35.0% | |
| ! | ACCATTTTCAACATTAGAGG+TGG | + | chr7.4:39218750-39218769 | None:intergenic | 35.0% |
| ! | AGTCATTTCCAAAAGCACAT+AGG | + | chr7.4:39217552-39217571 | None:intergenic | 35.0% |
| ! | GTCATTTCCAAAAGCACATA+GGG | + | chr7.4:39217551-39217570 | None:intergenic | 35.0% |
| !! | AGTCTTCAAGCTTTAGGTTA+AGG | + | chr7.4:39218682-39218701 | None:intergenic | 35.0% |
| !! | GTCTTCAAGCTTTAGGTTAA+GGG | + | chr7.4:39218681-39218700 | None:intergenic | 35.0% |
| !!! | ATTGTTTTGAATGTGTGGAC+CGG | - | chr7.4:39218499-39218518 | MS.gene055134:CDS | 35.0% |
| !!! | CGTTTTTATTGTCGTTTTGC+AGG | - | chr7.4:39217507-39217526 | MS.gene055134:CDS | 35.0% |
| !!! | GATTTTAGTTGCAGAGGATT+AGG | - | chr7.4:39217893-39217912 | MS.gene055134:intron | 35.0% |
| !!! | GTTGATGATTTTAGTTGCAG+AGG | - | chr7.4:39217887-39217906 | MS.gene055134:intron | 35.0% |
| !!! | GTTTTCCTTGGTAATGGTTA+TGG | - | chr7.4:39218147-39218166 | MS.gene055134:CDS | 35.0% |
| AACAACAACAACAACGTTGC+TGG | - | chr7.4:39218039-39218058 | MS.gene055134:CDS | 40.0% | |
| AAGGAAAACAGCTCTCATGT+AGG | + | chr7.4:39218136-39218155 | None:intergenic | 40.0% | |
| AATGGTTATGGTAGCAGTAC+TGG | - | chr7.4:39218159-39218178 | MS.gene055134:CDS | 40.0% | |
| ACATTATTACCCCTATGCCT+TGG | + | chr7.4:39218950-39218969 | None:intergenic | 40.0% | |
| AGGAAAACAGCTCTCATGTA+GGG | + | chr7.4:39218135-39218154 | None:intergenic | 40.0% | |
| AGGGTTGTGGAGTTTGAATT+TGG | + | chr7.4:39218116-39218135 | None:intergenic | 40.0% | |
| ATGGCTGAGAATTTGGATGA+CGG | - | chr7.4:39217107-39217126 | MS.gene055134:CDS | 40.0% | |
| CAATGAAATCAAGCTTCCAC+AGG | - | chr7.4:39219030-39219049 | MS.gene055134:CDS | 40.0% | |
| CAGCAAAGACAAACAAATGG+AGG | - | chr7.4:39217985-39218004 | MS.gene055134:CDS | 40.0% | |
| CTGAAAGGCTGAACACAATA+AGG | - | chr7.4:39217929-39217948 | MS.gene055134:intron | 40.0% | |
| GCAAAAAAGCTCAAATCAGC+AGG | + | chr7.4:39217760-39217779 | None:intergenic | 40.0% | |
| GCATTCTCACAAACACCATT+AGG | + | chr7.4:39217610-39217629 | None:intergenic | 40.0% | |
| GGAGGAAGAAATGTTGTTGA+TGG | - | chr7.4:39218003-39218022 | MS.gene055134:CDS | 40.0% | |
| GGCAACAACAAATTGCTGAA+AGG | - | chr7.4:39217914-39217933 | MS.gene055134:intron | 40.0% | |
| GGGGAAGAAGAATTTCTTTG+AGG | + | chr7.4:39217712-39217731 | None:intergenic | 40.0% | |
| GTTATGATTCTCAGAGGCTT+TGG | + | chr7.4:39217390-39217409 | None:intergenic | 40.0% | |
| TAGGTTTGTCATCATCTGCA+TGG | - | chr7.4:39218064-39218083 | MS.gene055134:CDS | 40.0% | |
| TGATGAAACTTTGCGGCATT+TGG | + | chr7.4:39217575-39217594 | None:intergenic | 40.0% | |
| TGCTACCATAACCATTACCA+AGG | + | chr7.4:39218155-39218174 | None:intergenic | 40.0% | |
| TGTTGAGCATGTTGTAGTGT+TGG | + | chr7.4:39218090-39218109 | None:intergenic | 40.0% | |
| TTGAAAAGCGAAAGCGAAGA+AGG | + | chr7.4:39217203-39217222 | None:intergenic | 40.0% | |
| TTTCTTGATTCAACAGGACG+AGG | + | chr7.4:39218201-39218220 | None:intergenic | 40.0% | |
| ! | AAACGATGCAAGTGTTGTTG+CGG | + | chr7.4:39218722-39218741 | None:intergenic | 40.0% |
| ! | AAAGCACATAGGGTTGATTG+TGG | + | chr7.4:39217541-39217560 | None:intergenic | 40.0% |
| ! | CAATCAACCCTATGTGCTTT+TGG | - | chr7.4:39217541-39217560 | MS.gene055134:intron | 40.0% |
| ! | CTTGGCTTGATGAAACTTTG+CGG | + | chr7.4:39217582-39217601 | None:intergenic | 40.0% |
| ! | CTTTTTCCTTATGGATTCGC+TGG | - | chr7.4:39217242-39217261 | MS.gene055134:intron | 40.0% |
| ! | TTTGGAATCAACATGGAGAG+AGG | + | chr7.4:39217372-39217391 | None:intergenic | 40.0% |
| !! | AACAACAACGTTGCTGGTTT+AGG | - | chr7.4:39218045-39218064 | MS.gene055134:CDS | 40.0% |
| !! | AGAGCTGTTTTCCTTGGTAA+TGG | - | chr7.4:39218141-39218160 | MS.gene055134:CDS | 40.0% |
| !! | CAAATCAGCAGGGTTGTTTT+TGG | + | chr7.4:39217749-39217768 | None:intergenic | 40.0% |
| !! | TACATGAGAGCTGTTTTCCT+TGG | - | chr7.4:39218135-39218154 | MS.gene055134:CDS | 40.0% |
| !! | TCGCTTTCGCTTTTCAACAA+TGG | - | chr7.4:39217206-39217225 | MS.gene055134:CDS | 40.0% |
| !!! | GATCCTCTGCTTTTTCCTTA+TGG | - | chr7.4:39217233-39217252 | MS.gene055134:intron | 40.0% |
| !!! | TTTATTGTCGTTTTGCAGGG+AGG | - | chr7.4:39217511-39217530 | MS.gene055134:CDS | 40.0% |
| AAACACCATTAGGGCTTCCT+TGG | + | chr7.4:39217600-39217619 | None:intergenic | 45.0% | |
| AAATCAAGCTTCCACAGGAG+TGG | - | chr7.4:39219035-39219054 | MS.gene055134:CDS | 45.0% | |
| AAGGCTGAACACAATAAGGG+CGG | - | chr7.4:39217933-39217952 | MS.gene055134:intron | 45.0% | |
| AGCGAAAGCGAAGAAGGTTT+CGG | + | chr7.4:39217197-39217216 | None:intergenic | 45.0% | |
| ATTTCATTGCTCACTGCTGC+TGG | + | chr7.4:39219019-39219038 | None:intergenic | 45.0% | |
| CGCAAAGTTTCATCAAGCCA+AGG | - | chr7.4:39217580-39217599 | MS.gene055134:intron | 45.0% | |
| CGGGTATGCAGAAGCAAAAT+GGG | - | chr7.4:39217953-39217972 | MS.gene055134:CDS | 45.0% | |
| GAAGCAGCAAGAGAATCGAT+TGG | + | chr7.4:39217284-39217303 | None:intergenic | 45.0% | |
| GGGTATGCAGAAGCAAAATG+GGG | - | chr7.4:39217954-39217973 | MS.gene055134:CDS | 45.0% | |
| GGTATGCAGAAGCAAAATGG+GGG | - | chr7.4:39217955-39217974 | MS.gene055134:CDS | 45.0% | |
| TGCATTTGTTCCAGCTAGAG+TGG | - | chr7.4:39218649-39218668 | MS.gene055134:intron | 45.0% | |
| TTATTACCCCTATGCCTTGG+AGG | + | chr7.4:39218947-39218966 | None:intergenic | 45.0% | |
| ! | ATTTGGATGACGGTGAGTTC+TGG | - | chr7.4:39217117-39217136 | MS.gene055134:CDS | 45.0% |
| ! | CGAAGAAGGTTTCGGTTTTG+TGG | + | chr7.4:39217189-39217208 | None:intergenic | 45.0% |
| !! | AGAAGGTTTCGGTTTTGTGG+TGG | + | chr7.4:39217186-39217205 | None:intergenic | 45.0% |
| !! | CAGAGGCTTTGGAATCAACA+TGG | + | chr7.4:39217379-39217398 | None:intergenic | 45.0% |
| !!! | TCAGCAGGGTTGTTTTTGGA+AGG | + | chr7.4:39217745-39217764 | None:intergenic | 45.0% |
| ACAGCTCTCATGTAGGGTTG+TGG | + | chr7.4:39218129-39218148 | None:intergenic | 50.0% | |
| AGGCTGAACACAATAAGGGC+GGG | - | chr7.4:39217934-39217953 | MS.gene055134:intron | 50.0% | |
| GCGGGTATGCAGAAGCAAAA+TGG | - | chr7.4:39217952-39217971 | MS.gene055134:CDS | 50.0% | |
| TCAAGCCAAGGAAGCCCTAA+TGG | - | chr7.4:39217592-39217611 | MS.gene055134:intron | 50.0% | |
| TCAGAGCCAGCGAATCCATA+AGG | + | chr7.4:39217251-39217270 | None:intergenic | 50.0% | |
| TGTTGCACCTCCAAGGCATA+GGG | - | chr7.4:39218937-39218956 | MS.gene055134:CDS | 50.0% | |
| !! | TATGGTAGCAGTACTGGCAC+TGG | - | chr7.4:39218165-39218184 | MS.gene055134:CDS | 50.0% |
| CAGTTTCTCTCCGACGACGA+CGG | - | chr7.4:39217149-39217168 | MS.gene055134:CDS | 55.0% | |
| CTGTTGCACCTCCAAGGCAT+AGG | - | chr7.4:39218936-39218955 | MS.gene055134:CDS | 55.0% | |
| GCAGCAGCAACAATACCAGC+AGG | - | chr7.4:39218987-39219006 | MS.gene055134:CDS | 55.0% | |
| GTTGCACCTCCAAGGCATAG+GGG | - | chr7.4:39218938-39218957 | MS.gene055134:CDS | 55.0% | |
| TAGCTGCTGTTGCACCTCCA+AGG | - | chr7.4:39218930-39218949 | MS.gene055134:CDS | 55.0% | |
| TCGTCGTCGGAGAGAAACTG+CGG | + | chr7.4:39217149-39217168 | None:intergenic | 55.0% | |
| TGTGTCATCACCGTCGTCGT+CGG | + | chr7.4:39217162-39217181 | None:intergenic | 55.0% | |
| ! | GATGCAAGTGTTGTTGCGGC+TGG | + | chr7.4:39218718-39218737 | None:intergenic | 55.0% |
| TCGTCGGAGAGAAACTGCGG+CGG | + | chr7.4:39217146-39217165 | None:intergenic | 60.0% | |
| ! | TTGCTCACTGCTGCTGGCTG+AGG | + | chr7.4:39219013-39219032 | None:intergenic | 60.0% |
| AGGGCATGCGCCACTCTAGC+TGG | + | chr7.4:39218662-39218681 | None:intergenic | 65.0% | |
| ! | TGCTGCTGGCTGAGGCCTGC+TGG | + | chr7.4:39219005-39219024 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39217107 | 39219066 | 39217107 | ID=MS.gene055134 |
| chr7.4 | mRNA | 39217107 | 39219066 | 39217107 | ID=MS.gene055134.t1;Parent=MS.gene055134 |
| chr7.4 | exon | 39218752 | 39219066 | 39218752 | ID=MS.gene055134.t1.exon1;Parent=MS.gene055134.t1 |
| chr7.4 | CDS | 39218752 | 39219066 | 39218752 | ID=cds.MS.gene055134.t1;Parent=MS.gene055134.t1 |
| chr7.4 | exon | 39218354 | 39218644 | 39218354 | ID=MS.gene055134.t1.exon2;Parent=MS.gene055134.t1 |
| chr7.4 | CDS | 39218354 | 39218644 | 39218354 | ID=cds.MS.gene055134.t1;Parent=MS.gene055134.t1 |
| chr7.4 | exon | 39217936 | 39218272 | 39217936 | ID=MS.gene055134.t1.exon3;Parent=MS.gene055134.t1 |
| chr7.4 | CDS | 39217936 | 39218272 | 39217936 | ID=cds.MS.gene055134.t1;Parent=MS.gene055134.t1 |
| chr7.4 | exon | 39217406 | 39217534 | 39217406 | ID=MS.gene055134.t1.exon4;Parent=MS.gene055134.t1 |
| chr7.4 | CDS | 39217406 | 39217534 | 39217406 | ID=cds.MS.gene055134.t1;Parent=MS.gene055134.t1 |
| chr7.4 | exon | 39217107 | 39217243 | 39217107 | ID=MS.gene055134.t1.exon5;Parent=MS.gene055134.t1 |
| chr7.4 | CDS | 39217107 | 39217243 | 39217107 | ID=cds.MS.gene055134.t1;Parent=MS.gene055134.t1 |
| Gene Sequence |
| Protein sequence |
