Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89257.t1 | XP_003623174.1 | 95.1 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 1.30E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89257.t1 | P32110 | 71.6 | 225 | 63 | 1 | 1 | 224 | 1 | 225 | 4.3e-89 | 328.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89257.t1 | B7FN12 | 95.1 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 9.7e-119 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene89257 | 0.827464 | 1.54E-54 | -1.69E-46 |
| MS.gene055151 | MS.gene89257 | 0.876989 | 9.00E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89257.t1 | MTR_7g065290 | 95.089 | 224 | 11 | 0 | 1 | 224 | 1 | 224 | 1.71e-157 | 435 |
| MS.gene89257.t1 | MTR_7g065265 | 90.179 | 224 | 22 | 0 | 1 | 224 | 1 | 224 | 1.27e-147 | 410 |
| MS.gene89257.t1 | MTR_7g065270 | 86.161 | 224 | 31 | 0 | 1 | 224 | 1 | 224 | 1.29e-142 | 397 |
| MS.gene89257.t1 | MTR_7g065600 | 79.911 | 224 | 45 | 0 | 1 | 224 | 1 | 224 | 1.03e-133 | 375 |
| MS.gene89257.t1 | MTR_7g065590 | 79.464 | 224 | 46 | 0 | 1 | 224 | 1 | 224 | 1.40e-130 | 367 |
| MS.gene89257.t1 | MTR_7g065230 | 80.804 | 224 | 38 | 1 | 1 | 224 | 1 | 219 | 2.37e-128 | 361 |
| MS.gene89257.t1 | MTR_7g065260 | 76.444 | 225 | 52 | 1 | 1 | 224 | 8 | 232 | 2.12e-114 | 326 |
| MS.gene89257.t1 | MTR_7g065720 | 69.778 | 225 | 67 | 1 | 1 | 224 | 1 | 225 | 1.99e-112 | 321 |
| MS.gene89257.t1 | MTR_7g065660 | 67.265 | 223 | 73 | 0 | 1 | 223 | 1 | 223 | 3.91e-111 | 318 |
| MS.gene89257.t1 | MTR_7g065630 | 68.037 | 219 | 66 | 1 | 1 | 219 | 19 | 233 | 1.73e-106 | 306 |
| MS.gene89257.t1 | MTR_7g065750 | 67.580 | 219 | 70 | 1 | 1 | 218 | 1 | 219 | 4.45e-106 | 305 |
| MS.gene89257.t1 | MTR_7g065740 | 64.545 | 220 | 77 | 1 | 1 | 219 | 1 | 220 | 1.21e-103 | 299 |
| MS.gene89257.t1 | MTR_4g019790 | 63.470 | 219 | 80 | 0 | 1 | 219 | 1 | 219 | 1.54e-103 | 298 |
| MS.gene89257.t1 | MTR_7g065640 | 61.883 | 223 | 67 | 1 | 1 | 223 | 1 | 205 | 2.83e-98 | 285 |
| MS.gene89257.t1 | MTR_7g065710 | 64.734 | 207 | 69 | 1 | 8 | 214 | 5 | 207 | 1.60e-94 | 276 |
| MS.gene89257.t1 | MTR_4g019780 | 60.930 | 215 | 82 | 2 | 2 | 215 | 3 | 216 | 2.48e-94 | 275 |
| MS.gene89257.t1 | MTR_7g065680 | 64.384 | 219 | 74 | 1 | 1 | 219 | 1 | 215 | 2.96e-89 | 262 |
| MS.gene89257.t1 | MTR_7g065700 | 64.486 | 214 | 72 | 1 | 1 | 214 | 1 | 210 | 3.13e-87 | 257 |
| MS.gene89257.t1 | MTR_6g080440 | 48.077 | 208 | 106 | 2 | 7 | 213 | 3 | 209 | 7.24e-65 | 200 |
| MS.gene89257.t1 | MTR_1g090150 | 47.664 | 214 | 107 | 3 | 6 | 216 | 2 | 213 | 8.12e-63 | 195 |
| MS.gene89257.t1 | MTR_3g099757 | 47.642 | 212 | 109 | 2 | 5 | 215 | 3 | 213 | 4.16e-60 | 188 |
| MS.gene89257.t1 | MTR_8g087425 | 43.182 | 220 | 123 | 2 | 4 | 222 | 2 | 220 | 7.89e-60 | 187 |
| MS.gene89257.t1 | MTR_8g087410 | 44.240 | 217 | 118 | 3 | 1 | 216 | 1 | 215 | 2.42e-56 | 179 |
| MS.gene89257.t1 | MTR_1g115195 | 43.119 | 218 | 121 | 2 | 7 | 221 | 3 | 220 | 7.24e-56 | 177 |
| MS.gene89257.t1 | MTR_5g040430 | 42.793 | 222 | 119 | 3 | 1 | 215 | 1 | 221 | 8.25e-55 | 175 |
| MS.gene89257.t1 | MTR_1g090070 | 42.986 | 221 | 121 | 3 | 7 | 223 | 9 | 228 | 1.37e-53 | 172 |
| MS.gene89257.t1 | MTR_1g090060 | 42.584 | 209 | 116 | 2 | 7 | 212 | 3 | 210 | 1.69e-51 | 166 |
| MS.gene89257.t1 | MTR_4g059730 | 42.056 | 214 | 118 | 3 | 6 | 215 | 3 | 214 | 1.31e-50 | 164 |
| MS.gene89257.t1 | MTR_1g090090 | 41.429 | 210 | 119 | 2 | 7 | 213 | 3 | 211 | 1.37e-50 | 164 |
| MS.gene89257.t1 | MTR_1g090100 | 41.121 | 214 | 122 | 2 | 8 | 218 | 3 | 215 | 2.29e-50 | 163 |
| MS.gene89257.t1 | MTR_5g037380 | 42.152 | 223 | 119 | 3 | 1 | 215 | 1 | 221 | 6.32e-50 | 162 |
| MS.gene89257.t1 | MTR_8g061950 | 42.466 | 219 | 118 | 3 | 5 | 215 | 3 | 221 | 4.55e-49 | 160 |
| MS.gene89257.t1 | MTR_2g070130 | 40.291 | 206 | 118 | 5 | 6 | 209 | 3 | 205 | 1.24e-42 | 144 |
| MS.gene89257.t1 | MTR_3g467420 | 41.546 | 207 | 116 | 5 | 16 | 220 | 18 | 221 | 2.62e-42 | 143 |
| MS.gene89257.t1 | MTR_2g070150 | 40.196 | 204 | 117 | 5 | 6 | 207 | 3 | 203 | 5.88e-42 | 141 |
| MS.gene89257.t1 | MTR_2g070140 | 40.722 | 194 | 110 | 5 | 21 | 212 | 2 | 192 | 4.64e-41 | 139 |
| MS.gene89257.t1 | MTR_3g467430 | 38.813 | 219 | 129 | 5 | 4 | 220 | 6 | 221 | 1.49e-40 | 138 |
| MS.gene89257.t1 | MTR_2g070200 | 40.686 | 204 | 117 | 4 | 6 | 207 | 3 | 204 | 8.66e-40 | 136 |
| MS.gene89257.t1 | MTR_2g070210 | 40.094 | 212 | 118 | 7 | 6 | 212 | 3 | 210 | 4.04e-39 | 134 |
| MS.gene89257.t1 | MTR_8g056940 | 38.462 | 208 | 120 | 5 | 16 | 218 | 13 | 217 | 1.09e-38 | 133 |
| MS.gene89257.t1 | MTR_2g070180 | 38.776 | 196 | 115 | 5 | 16 | 209 | 13 | 205 | 1.86e-38 | 133 |
| MS.gene89257.t1 | MTR_4g124130 | 43.979 | 191 | 97 | 6 | 6 | 191 | 3 | 188 | 2.39e-38 | 132 |
| MS.gene89257.t1 | MTR_2g070120 | 36.364 | 220 | 133 | 5 | 6 | 222 | 3 | 218 | 1.12e-37 | 130 |
| MS.gene89257.t1 | MTR_5g076900 | 37.264 | 212 | 128 | 4 | 3 | 212 | 2 | 210 | 2.10e-36 | 127 |
| MS.gene89257.t1 | MTR_2g070070 | 37.019 | 208 | 126 | 4 | 7 | 212 | 4 | 208 | 1.28e-33 | 120 |
| MS.gene89257.t1 | MTR_2g070060 | 35.577 | 208 | 129 | 4 | 7 | 212 | 4 | 208 | 2.60e-33 | 119 |
| MS.gene89257.t1 | MTR_0186s0030 | 46.565 | 131 | 66 | 3 | 16 | 144 | 13 | 141 | 1.38e-29 | 107 |
| MS.gene89257.t1 | MTR_2g070110 | 38.220 | 191 | 112 | 4 | 16 | 204 | 13 | 199 | 2.04e-28 | 107 |
| MS.gene89257.t1 | MTR_2g072120 | 43.077 | 65 | 36 | 1 | 51 | 114 | 2 | 66 | 3.60e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89257.t1 | AT3G09270 | 54.091 | 220 | 97 | 4 | 3 | 219 | 2 | 220 | 8.28e-77 | 231 |
| MS.gene89257.t1 | AT2G29420 | 47.465 | 217 | 112 | 2 | 3 | 218 | 5 | 220 | 2.10e-69 | 212 |
| MS.gene89257.t1 | AT2G29490 | 49.048 | 210 | 102 | 4 | 1 | 207 | 1 | 208 | 4.69e-60 | 188 |
| MS.gene89257.t1 | AT2G29480 | 48.804 | 209 | 104 | 3 | 1 | 207 | 1 | 208 | 1.71e-58 | 184 |
| MS.gene89257.t1 | AT2G29450 | 48.309 | 207 | 105 | 2 | 3 | 207 | 2 | 208 | 3.79e-58 | 183 |
| MS.gene89257.t1 | AT2G29460 | 45.933 | 209 | 110 | 3 | 1 | 207 | 1 | 208 | 2.00e-54 | 174 |
| MS.gene89257.t1 | AT2G29440 | 45.933 | 209 | 109 | 4 | 1 | 207 | 1 | 207 | 2.14e-53 | 171 |
| MS.gene89257.t1 | AT2G29470 | 44.550 | 211 | 111 | 5 | 1 | 207 | 1 | 209 | 1.56e-51 | 166 |
| MS.gene89257.t1 | AT1G10370 | 42.081 | 221 | 119 | 3 | 1 | 214 | 1 | 219 | 1.34e-50 | 164 |
| MS.gene89257.t1 | AT1G69930 | 37.054 | 224 | 135 | 2 | 2 | 219 | 7 | 230 | 2.74e-49 | 161 |
| MS.gene89257.t1 | AT1G27130 | 39.556 | 225 | 127 | 4 | 1 | 217 | 1 | 224 | 7.06e-48 | 157 |
| MS.gene89257.t1 | AT1G59700 | 43.119 | 218 | 116 | 4 | 5 | 214 | 4 | 221 | 4.86e-47 | 155 |
| MS.gene89257.t1 | AT1G59670 | 40.741 | 216 | 120 | 3 | 5 | 212 | 4 | 219 | 7.68e-46 | 152 |
| MS.gene89257.t1 | AT5G62480 | 41.284 | 218 | 117 | 4 | 8 | 215 | 9 | 225 | 2.84e-45 | 151 |
| MS.gene89257.t1 | AT1G10360 | 37.500 | 216 | 128 | 2 | 6 | 214 | 4 | 219 | 3.00e-44 | 148 |
| MS.gene89257.t1 | AT1G27140 | 37.391 | 230 | 134 | 4 | 1 | 221 | 1 | 229 | 7.84e-44 | 147 |
| MS.gene89257.t1 | AT1G74590 | 38.073 | 218 | 128 | 3 | 1 | 212 | 1 | 217 | 1.11e-43 | 147 |
| MS.gene89257.t1 | AT1G78380 | 40.865 | 208 | 118 | 4 | 7 | 212 | 4 | 208 | 2.75e-43 | 145 |
| MS.gene89257.t1 | AT1G78340 | 42.326 | 215 | 116 | 6 | 6 | 216 | 3 | 213 | 1.32e-42 | 143 |
| MS.gene89257.t1 | AT1G78370 | 40.097 | 207 | 118 | 6 | 16 | 220 | 13 | 215 | 6.78e-42 | 142 |
| MS.gene89257.t1 | AT1G17170 | 40.376 | 213 | 121 | 5 | 6 | 216 | 3 | 211 | 2.89e-41 | 140 |
| MS.gene89257.t1 | AT1G69920 | 36.404 | 228 | 135 | 4 | 1 | 218 | 26 | 253 | 5.46e-41 | 140 |
| MS.gene89257.t1 | AT1G78320 | 39.423 | 208 | 121 | 4 | 5 | 210 | 2 | 206 | 2.04e-40 | 138 |
| MS.gene89257.t1 | AT1G53680 | 39.151 | 212 | 124 | 4 | 1 | 209 | 1 | 210 | 2.62e-40 | 138 |
| MS.gene89257.t1 | AT1G17180 | 39.234 | 209 | 122 | 5 | 6 | 212 | 3 | 208 | 4.37e-39 | 134 |
| MS.gene89257.t1 | AT3G43800 | 38.647 | 207 | 118 | 6 | 4 | 204 | 2 | 205 | 9.00e-37 | 129 |
| MS.gene89257.t1 | AT1G78360 | 40.191 | 209 | 119 | 6 | 7 | 212 | 4 | 209 | 9.38e-37 | 129 |
| MS.gene89257.t1 | AT1G17190 | 41.573 | 178 | 99 | 5 | 16 | 191 | 14 | 188 | 3.35e-34 | 122 |
| MS.gene89257.t1 | AT5G62480 | 32.719 | 217 | 111 | 4 | 8 | 215 | 9 | 199 | 1.68e-27 | 104 |
| MS.gene89257.t1 | AT5G62480 | 32.719 | 217 | 110 | 4 | 8 | 215 | 9 | 198 | 3.42e-27 | 103 |
| MS.gene89257.t1 | AT1G78320 | 31.884 | 207 | 111 | 4 | 5 | 210 | 2 | 179 | 1.03e-23 | 94.4 |
| MS.gene89257.t1 | AT2G02380 | 27.442 | 215 | 137 | 6 | 5 | 207 | 9 | 216 | 1.64e-15 | 73.2 |
| MS.gene89257.t1 | AT2G02390 | 28.054 | 221 | 132 | 7 | 3 | 207 | 4 | 213 | 5.30e-13 | 66.2 |
| MS.gene89257.t1 | AT2G02390 | 27.632 | 228 | 131 | 8 | 3 | 207 | 4 | 220 | 4.80e-12 | 63.5 |
| MS.gene89257.t1 | AT2G02390 | 37.113 | 97 | 57 | 2 | 3 | 96 | 4 | 99 | 4.10e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGTTCGTTTC+TGG | 0.108094 | 7.1:+37039339 | MS.gene89257:CDS |
| GCTCGTTATGAAAGTCATTT+TGG | 0.207854 | 7.1:+37040779 | MS.gene89257:CDS |
| AATCACAAGTGACTCTGATA+TGG | 0.278115 | 7.1:-37039258 | None:intergenic |
| CCAAATGCTTCTTGTATAAC+AGG | 0.284363 | 7.1:-37040635 | None:intergenic |
| TTGGGTGATTGTTGAATTCT+TGG | 0.291920 | 7.1:-37040706 | None:intergenic |
| ACAGGAACTTTCTTGTAAAC+AGG | 0.303772 | 7.1:-37039215 | None:intergenic |
| GAGCTCAAAGACAAATTCTT+TGG | 0.309252 | 7.1:+37040557 | MS.gene89257:CDS |
| TTCTTTGGTGGGGAGGATAT+TGG | 0.313435 | 7.1:+37040572 | MS.gene89257:CDS |
| CTCTACGATGGCATCAAATA+AGG | 0.319615 | 7.1:+37039055 | None:intergenic |
| TGGCTCCAAATGTAAAGCTT+TGG | 0.348494 | 7.1:-37040686 | None:intergenic |
| TAAGGATCAGAAGGCAAGAT+TGG | 0.379779 | 7.1:-37039314 | None:intergenic |
| AATTTCCAAAGCTTTACATT+TGG | 0.388847 | 7.1:+37040681 | MS.gene89257:CDS |
| CCTGTTATACAAGAAGCATT+TGG | 0.389924 | 7.1:+37040635 | MS.gene89257:CDS |
| TTCATAACGAGCTTTGTAGA+AGG | 0.410089 | 7.1:-37040768 | None:intergenic |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.1:-37039110 | None:intergenic |
| GCCTCCTAGAGAGACCCTTT+TGG | 0.431280 | 7.1:+37040745 | MS.gene89257:CDS |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.1:+37039127 | MS.gene89257:CDS |
| TACCTTGTCATCTATGAGCT+TGG | 0.479184 | 7.1:-37039363 | None:intergenic |
| GAGCTTTGTAGAAGGCCAAA+AGG | 0.488923 | 7.1:-37040760 | None:intergenic |
| ATCACAAGTGACTCTGATAT+GGG | 0.492785 | 7.1:-37039257 | None:intergenic |
| TTATCATTATGAACAAATAC+AGG | 0.499212 | 7.1:-37039233 | None:intergenic |
| AATATGAGCAAGAAAAGGTT+GGG | 0.503590 | 7.1:+37039162 | MS.gene89257:CDS |
| CTCAAAGACAAATTCTTTGG+TGG | 0.503966 | 7.1:+37040560 | MS.gene89257:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.1:+37039282 | MS.gene89257:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.512709 | 7.1:+37039328 | MS.gene89257:CDS |
| CAGGAACTTTCTTGTAAACA+GGG | 0.515430 | 7.1:-37039214 | None:intergenic |
| AAATATGAGCAAGAAAAGGT+TGG | 0.516900 | 7.1:+37039161 | MS.gene89257:CDS |
| TCAAAGACAAATTCTTTGGT+GGG | 0.523453 | 7.1:+37040561 | MS.gene89257:CDS |
| AGAACGTGAGAAGAGTATTG+AGG | 0.526929 | 7.1:+37040502 | MS.gene89257:CDS |
| AGCTTTGTAGAAGGCCAAAA+GGG | 0.545982 | 7.1:-37040759 | None:intergenic |
| TGCAGTGTTTGAGTGGTGTA+CGG | 0.549609 | 7.1:+37040453 | MS.gene89257:intron |
| ATCAAATAAGGAAGAGGTGA+AGG | 0.549693 | 7.1:+37039067 | MS.gene89257:CDS |
| ATACAAATATGAGCAAGAAA+AGG | 0.550926 | 7.1:+37039157 | MS.gene89257:CDS |
| AGACAAATTCTTTGGTGGGG+AGG | 0.562220 | 7.1:+37040565 | MS.gene89257:CDS |
| TGGAAAGTCCATTTGTAACA+AGG | 0.573831 | 7.1:+37039102 | MS.gene89257:CDS |
| CAAAGACAAATTCTTTGGTG+GGG | 0.574827 | 7.1:+37040562 | MS.gene89257:CDS |
| GATGGCATCAAATAAGGAAG+AGG | 0.575114 | 7.1:+37039061 | None:intergenic |
| AAGGCCAAAAGGGTCTCTCT+AGG | 0.576747 | 7.1:-37040749 | None:intergenic |
| CAACAATCACCCAATTGTCA+AGG | 0.594522 | 7.1:+37040715 | MS.gene89257:CDS |
| GGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7.1:+37039103 | MS.gene89257:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.1:+37039128 | MS.gene89257:CDS |
| GCCAAAAGGGTCTCTCTAGG+AGG | 0.635297 | 7.1:-37040746 | None:intergenic |
| GACCAAGCTCATAGATGACA+AGG | 0.637840 | 7.1:+37039361 | MS.gene89257:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.642673 | 7.1:+37039106 | MS.gene89257:CDS |
| CTTGGTCCAGAAACGAACCA+AGG | 0.732486 | 7.1:-37039345 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTATATAAGATGT+TGG | - | chr7.1:37039691-37039710 | None:intergenic | 15.0% |
| !!! | ATCTAATAATTTTTTATGTC+AGG | - | chr7.1:37040311-37040330 | None:intergenic | 15.0% |
| !! | AATATGGTCAAAATATGTTA+CGG | + | chr7.1:37039735-37039754 | MS.gene89257:intron | 20.0% |
| !! | ATAAAAAGAAGTTTAGAAGA+AGG | - | chr7.1:37040336-37040355 | None:intergenic | 20.0% |
| !! | TATTTAATGCTAACTAAAGT+TGG | - | chr7.1:37039441-37039460 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACAAATAC+AGG | - | chr7.1:37039236-37039255 | None:intergenic | 20.0% |
| !!! | ATTAACTTATGTTACTTGTT+AGG | - | chr7.1:37040258-37040277 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGAGAAAAGTTC+AGG | - | chr7.1:37039954-37039973 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAAGTAGCTTAG+CGG | + | chr7.1:37039503-37039522 | MS.gene89257:intron | 20.0% |
| !!! | GTAAATAAATTTGAGATCTT+AGG | + | chr7.1:37039466-37039485 | MS.gene89257:intron | 20.0% |
| !!! | TACTTGTAAATTAGTTTATG+TGG | - | chr7.1:37040127-37040146 | None:intergenic | 20.0% |
| !!! | TTAACTTATGTTACTTGTTA+GGG | - | chr7.1:37040257-37040276 | None:intergenic | 20.0% |
| !!! | TTTTTAATGAGAAAAGTTCA+GGG | - | chr7.1:37039953-37039972 | None:intergenic | 20.0% |
| ! | AAAGCTCATACAATTAAATG+TGG | + | chr7.1:37039528-37039547 | MS.gene89257:intron | 25.0% |
| ! | AATTTCCAAAGCTTTACATT+TGG | + | chr7.1:37040681-37040700 | MS.gene89257:CDS | 25.0% |
| ! | ATACAAATATGAGCAAGAAA+AGG | + | chr7.1:37039157-37039176 | MS.gene89257:CDS | 25.0% |
| ! | ATATGGTCAAAATATGTTAC+GGG | + | chr7.1:37039736-37039755 | MS.gene89257:intron | 25.0% |
| ! | GCTAAGCTACTTAAAAAAAA+TGG | - | chr7.1:37039504-37039523 | None:intergenic | 25.0% |
| ! | TACACAAAGAAAATAGAAGA+GGG | - | chr7.1:37039396-37039415 | None:intergenic | 25.0% |
| ! | TTACACAAAGAAAATAGAAG+AGG | - | chr7.1:37039397-37039416 | None:intergenic | 25.0% |
| ! | TTTATTTAGGAAGTCTTCTA+TGG | - | chr7.1:37040374-37040393 | None:intergenic | 25.0% |
| !! | ATATGAGTAGATTTTGCAAA+TGG | - | chr7.1:37040172-37040191 | None:intergenic | 25.0% |
| !! | TAAACACCAATTTTACATCT+AGG | + | chr7.1:37039849-37039868 | MS.gene89257:intron | 25.0% |
| !! | TTTTAATGAGAAAAGTTCAG+GGG | - | chr7.1:37039952-37039971 | None:intergenic | 25.0% |
| !!! | CATTTTAGAAAAACATGCAA+GGG | - | chr7.1:37039584-37039603 | None:intergenic | 25.0% |
| !!! | TTTATGTGGCTCATTTTTAT+TGG | - | chr7.1:37040113-37040132 | None:intergenic | 25.0% |
| AAATATGAGCAAGAAAAGGT+TGG | + | chr7.1:37039161-37039180 | MS.gene89257:CDS | 30.0% | |
| AATATGAGCAAGAAAAGGTT+GGG | + | chr7.1:37039162-37039181 | MS.gene89257:CDS | 30.0% | |
| AATCCAAAAAGCTATGAGTA+CGG | - | chr7.1:37040615-37040634 | None:intergenic | 30.0% | |
| ACAATTAAATGTGGAGAAGT+GGG | + | chr7.1:37039537-37039556 | MS.gene89257:intron | 30.0% | |
| ACACAAAGAAAATAGAAGAG+GGG | - | chr7.1:37039395-37039414 | None:intergenic | 30.0% | |
| TAAAGTTGGACATTTGAACT+TGG | - | chr7.1:37039427-37039446 | None:intergenic | 30.0% | |
| TACAATTAAATGTGGAGAAG+TGG | + | chr7.1:37039536-37039555 | MS.gene89257:intron | 30.0% | |
| TCAAACACTGCAAAAAGAAA+TGG | - | chr7.1:37040445-37040464 | None:intergenic | 30.0% | |
| TCAAAGACAAATTCTTTGGT+GGG | + | chr7.1:37040561-37040580 | MS.gene89257:CDS | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.1:37039282-37039301 | MS.gene89257:CDS | 30.0% | |
| ! | TTATGTTACTTGTTAGGGTA+TGG | - | chr7.1:37040252-37040271 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7.1:37039128-37039147 | MS.gene89257:CDS | 30.0% |
| !! | GCATTTTAGAAAAACATGCA+AGG | - | chr7.1:37039585-37039604 | None:intergenic | 30.0% |
| AAGTTATCCACAACTCTTCA+AGG | + | chr7.1:37040216-37040235 | MS.gene89257:intron | 35.0% | |
| AATCACAAGTGACTCTGATA+TGG | - | chr7.1:37039261-37039280 | None:intergenic | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | - | chr7.1:37039218-37039237 | None:intergenic | 35.0% | |
| ACTCGTCCTAGATGTAAAAT+TGG | - | chr7.1:37039858-37039877 | None:intergenic | 35.0% | |
| AGTTATCCACAACTCTTCAA+GGG | + | chr7.1:37040217-37040236 | MS.gene89257:intron | 35.0% | |
| ATCAAATAAGGAAGAGGTGA+AGG | + | chr7.1:37039067-37039086 | MS.gene89257:CDS | 35.0% | |
| ATCACAAGTGACTCTGATAT+GGG | - | chr7.1:37039260-37039279 | None:intergenic | 35.0% | |
| CAAAGACAAATTCTTTGGTG+GGG | + | chr7.1:37040562-37040581 | MS.gene89257:CDS | 35.0% | |
| CAATTAAATGTGGAGAAGTG+GGG | + | chr7.1:37039538-37039557 | MS.gene89257:intron | 35.0% | |
| CAGGAACTTTCTTGTAAACA+GGG | - | chr7.1:37039217-37039236 | None:intergenic | 35.0% | |
| CATAAAACAATGAGAGAGGA+GGG | + | chr7.1:37039902-37039921 | MS.gene89257:intron | 35.0% | |
| CCAAATGCTTCTTGTATAAC+AGG | - | chr7.1:37040638-37040657 | None:intergenic | 35.0% | |
| CTCAAAGACAAATTCTTTGG+TGG | + | chr7.1:37040560-37040579 | MS.gene89257:CDS | 35.0% | |
| GAGCTCAAAGACAAATTCTT+TGG | + | chr7.1:37040557-37040576 | MS.gene89257:CDS | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | + | chr7.1:37039103-37039122 | MS.gene89257:CDS | 35.0% | |
| TAGGCATAAAACAATGAGAG+AGG | + | chr7.1:37039898-37039917 | MS.gene89257:intron | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | + | chr7.1:37039102-37039121 | MS.gene89257:CDS | 35.0% | |
| TTAGAAAAACATGCAAGGGT+CGG | - | chr7.1:37039580-37039599 | None:intergenic | 35.0% | |
| TTATGCCTAGAGAGAATATG+TGG | - | chr7.1:37039887-37039906 | None:intergenic | 35.0% | |
| TTGGGTGATTGTTGAATTCT+TGG | - | chr7.1:37040709-37040728 | None:intergenic | 35.0% | |
| ! | GCAGTTTTTCCTTGACAATT+GGG | - | chr7.1:37040727-37040746 | None:intergenic | 35.0% |
| ! | GCTCGTTATGAAAGTCATTT+TGG | + | chr7.1:37040779-37040798 | MS.gene89257:CDS | 35.0% |
| ! | TTCATAACGAGCTTTGTAGA+AGG | - | chr7.1:37040771-37040790 | None:intergenic | 35.0% |
| ! | TTCTTTTTGCAGTGTTTGAG+TGG | + | chr7.1:37040446-37040465 | MS.gene89257:intron | 35.0% |
| !! | CCTGTTATACAAGAAGCATT+TGG | + | chr7.1:37040635-37040654 | MS.gene89257:CDS | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7.1:37039127-37039146 | MS.gene89257:CDS | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7.1:37039106-37039125 | MS.gene89257:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7.1:37039113-37039132 | None:intergenic | 40.0% | |
| CAACAATCACCCAATTGTCA+AGG | + | chr7.1:37040715-37040734 | MS.gene89257:CDS | 40.0% | |
| GAGATCTTAGGTGTGTCTTT+GGG | + | chr7.1:37039478-37039497 | MS.gene89257:intron | 40.0% | |
| GCATAAAACAATGAGAGAGG+AGG | + | chr7.1:37039901-37039920 | MS.gene89257:intron | 40.0% | |
| TAAGGATCAGAAGGCAAGAT+TGG | - | chr7.1:37039317-37039336 | None:intergenic | 40.0% | |
| TACCTTGTCATCTATGAGCT+TGG | - | chr7.1:37039366-37039385 | None:intergenic | 40.0% | |
| TAGAAAAACATGCAAGGGTC+GGG | - | chr7.1:37039579-37039598 | None:intergenic | 40.0% | |
| TCACACCACATATTCTCTCT+AGG | + | chr7.1:37039879-37039898 | MS.gene89257:intron | 40.0% | |
| TGAGATCTTAGGTGTGTCTT+TGG | + | chr7.1:37039477-37039496 | MS.gene89257:intron | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.1:37039328-37039347 | MS.gene89257:CDS | 40.0% | |
| TGGCTCCAAATGTAAAGCTT+TGG | - | chr7.1:37040689-37040708 | None:intergenic | 40.0% | |
| ! | AAGGAAGAGGTGAAGGTTTT+TGG | + | chr7.1:37039074-37039093 | MS.gene89257:CDS | 40.0% |
| ! | AGCTTTGTAGAAGGCCAAAA+GGG | - | chr7.1:37040762-37040781 | None:intergenic | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.1:37039326-37039345 | None:intergenic | 40.0% |
| ! | GGCAGTTTTTCCTTGACAAT+TGG | - | chr7.1:37040728-37040747 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7.1:37040502-37040521 | MS.gene89257:CDS | 40.0% |
| !! | AGAGGTGAAGGTTTTTGGAT+TGG | + | chr7.1:37039079-37039098 | MS.gene89257:CDS | 40.0% |
| ACTCTTCTTCGAGAAGAGAG+TGG | - | chr7.1:37039985-37040004 | None:intergenic | 45.0% | |
| AGAAAAACATGCAAGGGTCG+GGG | - | chr7.1:37039578-37039597 | None:intergenic | 45.0% | |
| AGACAAATTCTTTGGTGGGG+AGG | + | chr7.1:37040565-37040584 | MS.gene89257:CDS | 45.0% | |
| ATGTCACCCTTGAAGAGTTG+TGG | - | chr7.1:37040226-37040245 | None:intergenic | 45.0% | |
| CAACTCTTCAAGGGTGACAT+AGG | + | chr7.1:37040226-37040245 | MS.gene89257:intron | 45.0% | |
| GACCAAGCTCATAGATGACA+AGG | + | chr7.1:37039361-37039380 | MS.gene89257:CDS | 45.0% | |
| TGCAGTGTTTGAGTGGTGTA+CGG | + | chr7.1:37040453-37040472 | MS.gene89257:intron | 45.0% | |
| TTCTTTGGTGGGGAGGATAT+TGG | + | chr7.1:37040572-37040591 | MS.gene89257:CDS | 45.0% | |
| ! | AAAGAGCCTTGGTTCGTTTC+TGG | + | chr7.1:37039339-37039358 | MS.gene89257:CDS | 45.0% |
| ! | CGAACCAAGGCTCTTTTGTA+AGG | - | chr7.1:37039335-37039354 | None:intergenic | 45.0% |
| ! | CTGCCGTACTCATAGCTTTT+TGG | + | chr7.1:37040609-37040628 | MS.gene89257:CDS | 45.0% |
| ! | GAGCTTTGTAGAAGGCCAAA+AGG | - | chr7.1:37040763-37040782 | None:intergenic | 45.0% |
| !! | GGTGAAGGTTTTTGGATTGG+TGG | + | chr7.1:37039082-37039101 | MS.gene89257:CDS | 45.0% |
| !! | TACATTAATAAAAAAAAATA+TGG | + | chr7.1:37039719-37039738 | MS.gene89257:intron | 5.0% |
| !!! | TAAATAATTTGTTTTTATTT+AGG | - | chr7.1:37040387-37040406 | None:intergenic | 5.0% |
| AAGGCCAAAAGGGTCTCTCT+AGG | - | chr7.1:37040752-37040771 | None:intergenic | 50.0% | |
| AGAGAGGAGGGATGTGAGTT+GGG | + | chr7.1:37039914-37039933 | MS.gene89257:intron | 50.0% | |
| CTTGGTCCAGAAACGAACCA+AGG | - | chr7.1:37039348-37039367 | None:intergenic | 50.0% | |
| GAGAGAGGAGGGATGTGAGT+TGG | + | chr7.1:37039913-37039932 | MS.gene89257:intron | 55.0% | |
| GCCAAAAGGGTCTCTCTAGG+AGG | - | chr7.1:37040749-37040768 | None:intergenic | 55.0% | |
| ! | AGGGATGTGAGTTGGGTGGA+TGG | + | chr7.1:37039921-37039940 | MS.gene89257:intron | 55.0% |
| ! | GCCTCCTAGAGAGACCCTTT+TGG | + | chr7.1:37040745-37040764 | MS.gene89257:CDS | 55.0% |
| ! | GGATGTGAGTTGGGTGGATG+GGG | + | chr7.1:37039923-37039942 | MS.gene89257:intron | 55.0% |
| ! | GGGATGTGAGTTGGGTGGAT+GGG | + | chr7.1:37039922-37039941 | MS.gene89257:intron | 55.0% |
| ! | GAGGAGGGATGTGAGTTGGG+TGG | + | chr7.1:37039917-37039936 | MS.gene89257:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 37039062 | 37040811 | 37039062 | ID=MS.gene89257 |
| chr7.1 | mRNA | 37039062 | 37040811 | 37039062 | ID=MS.gene89257.t1;Parent=MS.gene89257 |
| chr7.1 | exon | 37039062 | 37039382 | 37039062 | ID=MS.gene89257.t1.exon1;Parent=MS.gene89257.t1 |
| chr7.1 | CDS | 37039062 | 37039382 | 37039062 | ID=cds.MS.gene89257.t1;Parent=MS.gene89257.t1 |
| chr7.1 | exon | 37040458 | 37040811 | 37040458 | ID=MS.gene89257.t1.exon2;Parent=MS.gene89257.t1 |
| chr7.1 | CDS | 37040458 | 37040811 | 37040458 | ID=cds.MS.gene89257.t1;Parent=MS.gene89257.t1 |
| Gene Sequence |
| Protein sequence |
