Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055151.t1 | XP_003623174.1 | 96 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 2.10E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055151.t1 | P32110 | 72.4 | 225 | 61 | 1 | 1 | 224 | 1 | 225 | 1.1e-89 | 330.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055151.t1 | B7FN12 | 96.0 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 1.5e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene055151 | 0.805599 | 1.23E-49 | -1.69E-46 |
| MS.gene055151 | MS.gene055155 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene055151 | MS.gene23651 | 0.8461 | 2.68E-59 | -1.69E-46 |
| MS.gene055151 | MS.gene39037 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene055151 | MS.gene44909 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene055151 | MS.gene46055 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene055151 | MS.gene73644 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene055151 | MS.gene74935 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene055151 | MS.gene79698 | 0.80404 | 2.61E-49 | -1.69E-46 |
| MS.gene055151 | MS.gene89256 | 0.824568 | 7.52E-54 | -1.69E-46 |
| MS.gene055151 | MS.gene89257 | 0.876989 | 9.00E-69 | -1.69E-46 |
| MS.gene055151 | MS.gene89262 | 0.843176 | 1.65E-58 | -1.69E-46 |
| MS.gene055151 | MS.gene92076 | 0.800891 | 1.16E-48 | -1.69E-46 |
| MS.gene055151 | MS.gene94264 | 0.87119 | 8.25E-67 | -1.69E-46 |
| MS.gene055151 | MS.gene94266 | 0.834767 | 2.48E-56 | -1.69E-46 |
| MS.gene055151 | MS.gene98636 | 0.809754 | 1.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055151.t1 | MTR_7g065290 | 95.982 | 224 | 9 | 0 | 1 | 224 | 1 | 224 | 9.97e-159 | 438 |
| MS.gene055151.t1 | MTR_7g065265 | 89.732 | 224 | 23 | 0 | 1 | 224 | 1 | 224 | 1.95e-147 | 409 |
| MS.gene055151.t1 | MTR_7g065270 | 85.714 | 224 | 32 | 0 | 1 | 224 | 1 | 224 | 3.85e-142 | 396 |
| MS.gene055151.t1 | MTR_7g065600 | 80.357 | 224 | 44 | 0 | 1 | 224 | 1 | 224 | 4.40e-134 | 376 |
| MS.gene055151.t1 | MTR_7g065590 | 80.357 | 224 | 44 | 0 | 1 | 224 | 1 | 224 | 1.55e-132 | 372 |
| MS.gene055151.t1 | MTR_7g065230 | 81.250 | 224 | 37 | 1 | 1 | 224 | 1 | 219 | 2.24e-129 | 363 |
| MS.gene055151.t1 | MTR_7g065260 | 77.778 | 225 | 49 | 1 | 1 | 224 | 8 | 232 | 1.88e-116 | 332 |
| MS.gene055151.t1 | MTR_7g065720 | 70.667 | 225 | 65 | 1 | 1 | 224 | 1 | 225 | 3.61e-114 | 325 |
| MS.gene055151.t1 | MTR_7g065660 | 68.161 | 223 | 71 | 0 | 1 | 223 | 1 | 223 | 4.29e-113 | 323 |
| MS.gene055151.t1 | MTR_7g065750 | 68.493 | 219 | 68 | 1 | 1 | 218 | 1 | 219 | 5.63e-108 | 310 |
| MS.gene055151.t1 | MTR_7g065630 | 68.493 | 219 | 65 | 1 | 1 | 219 | 19 | 233 | 1.49e-107 | 309 |
| MS.gene055151.t1 | MTR_7g065740 | 65.000 | 220 | 76 | 1 | 1 | 219 | 1 | 220 | 7.92e-105 | 302 |
| MS.gene055151.t1 | MTR_4g019790 | 63.927 | 219 | 79 | 0 | 1 | 219 | 1 | 219 | 2.52e-104 | 300 |
| MS.gene055151.t1 | MTR_7g065640 | 62.332 | 223 | 66 | 1 | 1 | 223 | 1 | 205 | 5.81e-100 | 289 |
| MS.gene055151.t1 | MTR_7g065710 | 65.217 | 207 | 68 | 1 | 8 | 214 | 5 | 207 | 1.38e-95 | 278 |
| MS.gene055151.t1 | MTR_4g019780 | 61.395 | 215 | 81 | 2 | 2 | 215 | 3 | 216 | 5.35e-95 | 277 |
| MS.gene055151.t1 | MTR_7g065680 | 64.840 | 219 | 73 | 1 | 1 | 219 | 1 | 215 | 2.12e-90 | 265 |
| MS.gene055151.t1 | MTR_7g065700 | 64.953 | 214 | 71 | 1 | 1 | 214 | 1 | 210 | 3.05e-88 | 260 |
| MS.gene055151.t1 | MTR_6g080440 | 47.596 | 208 | 107 | 2 | 7 | 213 | 3 | 209 | 2.02e-65 | 202 |
| MS.gene055151.t1 | MTR_1g090150 | 47.664 | 214 | 107 | 3 | 6 | 216 | 2 | 213 | 4.74e-64 | 198 |
| MS.gene055151.t1 | MTR_3g099757 | 47.170 | 212 | 110 | 2 | 5 | 215 | 3 | 213 | 6.86e-60 | 187 |
| MS.gene055151.t1 | MTR_8g087425 | 42.727 | 220 | 124 | 2 | 4 | 222 | 2 | 220 | 1.97e-59 | 187 |
| MS.gene055151.t1 | MTR_8g087410 | 44.700 | 217 | 117 | 3 | 1 | 216 | 1 | 215 | 3.04e-57 | 181 |
| MS.gene055151.t1 | MTR_1g115195 | 43.578 | 218 | 120 | 2 | 7 | 221 | 3 | 220 | 1.53e-56 | 179 |
| MS.gene055151.t1 | MTR_5g040430 | 42.342 | 222 | 120 | 3 | 1 | 215 | 1 | 221 | 1.27e-53 | 172 |
| MS.gene055151.t1 | MTR_1g090070 | 42.986 | 221 | 121 | 3 | 7 | 223 | 9 | 228 | 1.43e-53 | 172 |
| MS.gene055151.t1 | MTR_4g059730 | 42.523 | 214 | 117 | 3 | 6 | 215 | 3 | 214 | 9.83e-52 | 167 |
| MS.gene055151.t1 | MTR_1g090060 | 42.584 | 209 | 116 | 2 | 7 | 212 | 3 | 210 | 1.59e-51 | 166 |
| MS.gene055151.t1 | MTR_1g090100 | 42.056 | 214 | 120 | 2 | 8 | 218 | 3 | 215 | 8.81e-51 | 164 |
| MS.gene055151.t1 | MTR_1g090090 | 41.429 | 210 | 119 | 2 | 7 | 213 | 3 | 211 | 1.40e-50 | 164 |
| MS.gene055151.t1 | MTR_5g037380 | 41.704 | 223 | 120 | 3 | 1 | 215 | 1 | 221 | 2.55e-50 | 163 |
| MS.gene055151.t1 | MTR_8g061950 | 42.009 | 219 | 119 | 3 | 5 | 215 | 3 | 221 | 2.00e-49 | 161 |
| MS.gene055151.t1 | MTR_3g467420 | 42.029 | 207 | 115 | 5 | 16 | 220 | 18 | 221 | 5.30e-43 | 144 |
| MS.gene055151.t1 | MTR_2g070130 | 40.291 | 206 | 118 | 5 | 6 | 209 | 3 | 205 | 6.17e-43 | 144 |
| MS.gene055151.t1 | MTR_2g070150 | 40.196 | 204 | 117 | 5 | 6 | 207 | 3 | 203 | 2.91e-42 | 142 |
| MS.gene055151.t1 | MTR_2g070140 | 40.513 | 195 | 111 | 5 | 20 | 212 | 1 | 192 | 2.65e-41 | 139 |
| MS.gene055151.t1 | MTR_3g467430 | 39.269 | 219 | 128 | 5 | 4 | 220 | 6 | 221 | 3.16e-41 | 140 |
| MS.gene055151.t1 | MTR_2g070200 | 40.686 | 204 | 117 | 4 | 6 | 207 | 3 | 204 | 4.49e-40 | 137 |
| MS.gene055151.t1 | MTR_2g070210 | 40.094 | 212 | 118 | 7 | 6 | 212 | 3 | 210 | 9.85e-40 | 136 |
| MS.gene055151.t1 | MTR_2g070180 | 38.776 | 196 | 115 | 5 | 16 | 209 | 13 | 205 | 9.75e-39 | 133 |
| MS.gene055151.t1 | MTR_4g124130 | 43.979 | 191 | 97 | 6 | 6 | 191 | 3 | 188 | 2.64e-38 | 132 |
| MS.gene055151.t1 | MTR_8g056940 | 38.462 | 208 | 120 | 5 | 16 | 218 | 13 | 217 | 5.63e-38 | 131 |
| MS.gene055151.t1 | MTR_2g070120 | 36.199 | 221 | 134 | 5 | 6 | 223 | 3 | 219 | 7.69e-38 | 131 |
| MS.gene055151.t1 | MTR_5g076900 | 37.264 | 212 | 128 | 4 | 3 | 212 | 2 | 210 | 2.24e-36 | 127 |
| MS.gene055151.t1 | MTR_2g070070 | 37.019 | 208 | 126 | 4 | 7 | 212 | 4 | 208 | 1.19e-33 | 120 |
| MS.gene055151.t1 | MTR_2g070060 | 35.577 | 208 | 129 | 4 | 7 | 212 | 4 | 208 | 2.31e-33 | 120 |
| MS.gene055151.t1 | MTR_0186s0030 | 46.565 | 131 | 66 | 3 | 16 | 144 | 13 | 141 | 1.29e-29 | 107 |
| MS.gene055151.t1 | MTR_2g070110 | 38.220 | 191 | 112 | 4 | 16 | 204 | 13 | 199 | 1.98e-28 | 107 |
| MS.gene055151.t1 | MTR_2g072120 | 43.077 | 65 | 36 | 1 | 51 | 114 | 2 | 66 | 3.79e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055151.t1 | AT3G09270 | 54.545 | 220 | 96 | 4 | 3 | 219 | 2 | 220 | 2.36e-77 | 232 |
| MS.gene055151.t1 | AT2G29420 | 47.465 | 217 | 112 | 2 | 3 | 218 | 5 | 220 | 5.37e-70 | 214 |
| MS.gene055151.t1 | AT2G29490 | 49.048 | 210 | 102 | 4 | 1 | 207 | 1 | 208 | 1.58e-60 | 189 |
| MS.gene055151.t1 | AT2G29480 | 48.804 | 209 | 104 | 3 | 1 | 207 | 1 | 208 | 6.44e-59 | 185 |
| MS.gene055151.t1 | AT2G29450 | 48.309 | 207 | 105 | 2 | 3 | 207 | 2 | 208 | 1.38e-58 | 184 |
| MS.gene055151.t1 | AT2G29460 | 45.933 | 209 | 110 | 3 | 1 | 207 | 1 | 208 | 5.99e-55 | 175 |
| MS.gene055151.t1 | AT2G29440 | 45.933 | 209 | 109 | 4 | 1 | 207 | 1 | 207 | 7.95e-54 | 172 |
| MS.gene055151.t1 | AT2G29470 | 44.550 | 211 | 111 | 5 | 1 | 207 | 1 | 209 | 5.27e-52 | 168 |
| MS.gene055151.t1 | AT1G10370 | 41.629 | 221 | 120 | 3 | 1 | 214 | 1 | 219 | 2.04e-50 | 164 |
| MS.gene055151.t1 | AT1G69930 | 36.607 | 224 | 136 | 2 | 2 | 219 | 7 | 230 | 3.36e-49 | 161 |
| MS.gene055151.t1 | AT1G27130 | 39.111 | 225 | 128 | 4 | 1 | 217 | 1 | 224 | 2.81e-48 | 158 |
| MS.gene055151.t1 | AT1G59700 | 43.119 | 218 | 116 | 4 | 5 | 214 | 4 | 221 | 2.26e-47 | 156 |
| MS.gene055151.t1 | AT1G59670 | 40.741 | 216 | 120 | 3 | 5 | 212 | 4 | 219 | 4.15e-46 | 153 |
| MS.gene055151.t1 | AT5G62480 | 41.284 | 218 | 117 | 4 | 8 | 215 | 9 | 225 | 1.69e-45 | 152 |
| MS.gene055151.t1 | AT1G10360 | 37.037 | 216 | 129 | 2 | 6 | 214 | 4 | 219 | 1.38e-44 | 149 |
| MS.gene055151.t1 | AT1G74590 | 38.073 | 218 | 128 | 3 | 1 | 212 | 1 | 217 | 4.28e-44 | 148 |
| MS.gene055151.t1 | AT1G27140 | 36.957 | 230 | 135 | 4 | 1 | 221 | 1 | 229 | 5.04e-44 | 148 |
| MS.gene055151.t1 | AT1G78340 | 42.326 | 215 | 116 | 6 | 6 | 216 | 3 | 213 | 1.15e-42 | 144 |
| MS.gene055151.t1 | AT1G78380 | 40.385 | 208 | 119 | 4 | 7 | 212 | 4 | 208 | 1.33e-42 | 144 |
| MS.gene055151.t1 | AT1G78370 | 40.580 | 207 | 117 | 6 | 16 | 220 | 13 | 215 | 1.10e-41 | 141 |
| MS.gene055151.t1 | AT1G69920 | 35.965 | 228 | 136 | 4 | 1 | 218 | 26 | 253 | 5.52e-41 | 140 |
| MS.gene055151.t1 | AT1G17170 | 39.906 | 213 | 122 | 5 | 6 | 216 | 3 | 211 | 6.36e-41 | 139 |
| MS.gene055151.t1 | AT1G78320 | 39.904 | 208 | 120 | 4 | 5 | 210 | 2 | 206 | 8.89e-41 | 139 |
| MS.gene055151.t1 | AT1G53680 | 39.151 | 212 | 124 | 4 | 1 | 209 | 1 | 210 | 3.07e-40 | 137 |
| MS.gene055151.t1 | AT1G17180 | 39.234 | 209 | 122 | 5 | 6 | 212 | 3 | 208 | 4.41e-39 | 134 |
| MS.gene055151.t1 | AT3G43800 | 38.164 | 207 | 119 | 6 | 4 | 204 | 2 | 205 | 7.27e-37 | 129 |
| MS.gene055151.t1 | AT1G78360 | 40.191 | 209 | 119 | 6 | 7 | 212 | 4 | 209 | 1.41e-36 | 128 |
| MS.gene055151.t1 | AT1G17190 | 41.573 | 178 | 99 | 5 | 16 | 191 | 14 | 188 | 2.73e-34 | 122 |
| MS.gene055151.t1 | AT5G62480 | 32.719 | 217 | 111 | 4 | 8 | 215 | 9 | 199 | 1.01e-27 | 105 |
| MS.gene055151.t1 | AT5G62480 | 32.719 | 217 | 110 | 4 | 8 | 215 | 9 | 198 | 1.97e-27 | 104 |
| MS.gene055151.t1 | AT1G78320 | 32.524 | 206 | 109 | 4 | 6 | 210 | 3 | 179 | 3.75e-24 | 95.5 |
| MS.gene055151.t1 | AT2G02380 | 28.311 | 219 | 130 | 8 | 5 | 207 | 9 | 216 | 4.01e-16 | 74.7 |
| MS.gene055151.t1 | AT2G02390 | 27.602 | 221 | 133 | 6 | 3 | 207 | 4 | 213 | 1.75e-13 | 67.4 |
| MS.gene055151.t1 | AT2G02390 | 28.070 | 228 | 130 | 8 | 3 | 207 | 4 | 220 | 1.25e-12 | 65.1 |
| MS.gene055151.t1 | AT2G02390 | 37.113 | 97 | 57 | 2 | 3 | 96 | 4 | 99 | 3.49e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGTTCGTTTC+TGG | 0.108094 | 7.4:+39399992 | MS.gene055151:CDS |
| GCTCGTTATGAAAGTCATTT+TGG | 0.207854 | 7.4:+39401434 | MS.gene055151:CDS |
| CCAAATGCTTCTTGTATAAT+AGG | 0.242368 | 7.4:-39401290 | None:intergenic |
| AATCACAAGTGACTCTGATA+TGG | 0.278115 | 7.4:-39399911 | None:intergenic |
| TTGGGTGATTGTTGAATTCT+TGG | 0.291920 | 7.4:-39401361 | None:intergenic |
| ACAGGAACTTTCTTGTAAAC+AGG | 0.303772 | 7.4:-39399868 | None:intergenic |
| CTCTACGATGGCATCAAATA+AGG | 0.319615 | 7.4:+39399708 | None:intergenic |
| TGGCTCCAATTGTAAAGCTT+TGG | 0.323925 | 7.4:-39401341 | None:intergenic |
| GAGCTCAAGGACAAATTCTT+TGG | 0.339009 | 7.4:+39401212 | MS.gene055151:CDS |
| TAAGGATCAGAAGGCAAGAT+TGG | 0.379779 | 7.4:-39399967 | None:intergenic |
| GCCTCCTAGAGAGACCCTTT+TGG | 0.388160 | 7.4:+39401400 | MS.gene055151:CDS |
| CCTATTATACAAGAAGCATT+TGG | 0.389514 | 7.4:+39401290 | MS.gene055151:CDS |
| TTCATAACGAGCTTTGTAGA+AGG | 0.410089 | 7.4:-39401423 | None:intergenic |
| AATTTCCAAAGCTTTACAAT+TGG | 0.423886 | 7.4:+39401336 | MS.gene055151:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.4:-39399763 | None:intergenic |
| TTCTTTGGTGGGGAGGAGAT+TGG | 0.431190 | 7.4:+39401227 | MS.gene055151:CDS |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.4:+39399780 | MS.gene055151:CDS |
| TACCTTGTCATCTATGAGCT+TGG | 0.479184 | 7.4:-39400016 | None:intergenic |
| GAGCTTTGTAGAAGGCCAAA+AGG | 0.488923 | 7.4:-39401415 | None:intergenic |
| ATCACAAGTGACTCTGATAT+GGG | 0.492785 | 7.4:-39399910 | None:intergenic |
| TTATCATTATGAACAAATAC+AGG | 0.499212 | 7.4:-39399886 | None:intergenic |
| AAGCTTTGGAAATTCTTCAC+TGG | 0.499393 | 7.4:-39401327 | None:intergenic |
| AATATGAGCAAGAAAAGGTT+GGG | 0.503590 | 7.4:+39399815 | MS.gene055151:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.4:+39399935 | MS.gene055151:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.512709 | 7.4:+39399981 | MS.gene055151:CDS |
| CTCAAGGACAAATTCTTTGG+TGG | 0.512720 | 7.4:+39401215 | MS.gene055151:CDS |
| CAGGAACTTTCTTGTAAACA+GGG | 0.515430 | 7.4:-39399867 | None:intergenic |
| AAATATGAGCAAGAAAAGGT+TGG | 0.516900 | 7.4:+39399814 | MS.gene055151:CDS |
| TCAAGGACAAATTCTTTGGT+GGG | 0.523453 | 7.4:+39401216 | MS.gene055151:CDS |
| AGAACGTGAGAAGAGTATTG+AGG | 0.526929 | 7.4:+39401157 | MS.gene055151:CDS |
| AGCTTTGTAGAAGGCCAAAA+GGG | 0.545982 | 7.4:-39401414 | None:intergenic |
| ATTTCTTGAGAATGAGCTCA+AGG | 0.546430 | 7.4:+39401199 | MS.gene055151:CDS |
| TGCAGTGTTTGAGTGGTGTA+CGG | 0.549609 | 7.4:+39401108 | MS.gene055151:intron |
| ATCAAATAAGGAAGAGGTGA+AGG | 0.549693 | 7.4:+39399720 | MS.gene055151:CDS |
| ATACAAATATGAGCAAGAAA+AGG | 0.550926 | 7.4:+39399810 | MS.gene055151:CDS |
| GAGTATTGAGGAAACAAAAG+AGG | 0.559224 | 7.4:+39401169 | MS.gene055151:CDS |
| TGGAAAGTCCATTTGTAACA+AGG | 0.573831 | 7.4:+39399755 | MS.gene055151:CDS |
| CAAGGACAAATTCTTTGGTG+GGG | 0.574827 | 7.4:+39401217 | MS.gene055151:CDS |
| GGACAAATTCTTTGGTGGGG+AGG | 0.574875 | 7.4:+39401220 | MS.gene055151:CDS |
| GATGGCATCAAATAAGGAAG+AGG | 0.575114 | 7.4:+39399714 | None:intergenic |
| AAGGCCAAAAGGGTCTCTCT+AGG | 0.576747 | 7.4:-39401404 | None:intergenic |
| GGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7.4:+39399756 | MS.gene055151:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.4:+39399781 | MS.gene055151:CDS |
| GCCAAAAGGGTCTCTCTAGG+AGG | 0.635297 | 7.4:-39401401 | None:intergenic |
| GACCAAGCTCATAGATGACA+AGG | 0.637840 | 7.4:+39400014 | MS.gene055151:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.642673 | 7.4:+39399759 | MS.gene055151:CDS |
| CTTGGTCCAGAAACGAACCA+AGG | 0.732486 | 7.4:-39399998 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTATATAAGATGT+TGG | - | chr7.4:39400345-39400364 | None:intergenic | 15.0% |
| !!! | ATCTAATAATTTTTTAAGTC+AGG | - | chr7.4:39400966-39400985 | None:intergenic | 15.0% |
| !! | ATAAAAAGAAGTTTAGAAGA+AGG | - | chr7.4:39400991-39401010 | None:intergenic | 20.0% |
| !! | CTAAGCTACTTAAAAAAAAA+TGG | - | chr7.4:39400157-39400176 | None:intergenic | 20.0% |
| !! | TATTTAATGCTAACTAAAGT+TGG | - | chr7.4:39400094-39400113 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACAAATAC+AGG | - | chr7.4:39399889-39399908 | None:intergenic | 20.0% |
| !!! | ATTAACTTATGTTACTTGTT+AGG | - | chr7.4:39400913-39400932 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGAGAAAAGTTC+AGG | - | chr7.4:39400609-39400628 | None:intergenic | 20.0% |
| !!! | TACTTGTAAATTAGTTTATG+TGG | - | chr7.4:39400782-39400801 | None:intergenic | 20.0% |
| !!! | TTAACTTATGTTACTTGTTA+GGG | - | chr7.4:39400912-39400931 | None:intergenic | 20.0% |
| !!! | TTTTTAATGAGAAAAGTTCA+GGG | - | chr7.4:39400608-39400627 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAAGTAGCTTAG+CGG | + | chr7.4:39400157-39400176 | MS.gene055151:intron | 20.0% |
| ! | AAAGCTCATACAATTAAATG+TGG | + | chr7.4:39400182-39400201 | MS.gene055151:intron | 25.0% |
| ! | AATTTCCAAAGCTTTACAAT+TGG | + | chr7.4:39401336-39401355 | MS.gene055151:CDS | 25.0% |
| ! | ATACAAATATGAGCAAGAAA+AGG | + | chr7.4:39399810-39399829 | MS.gene055151:CDS | 25.0% |
| ! | TACACAAAGAAAATAGAAGA+GGG | - | chr7.4:39400049-39400068 | None:intergenic | 25.0% |
| ! | TTACACAAAGAAAATAGAAG+AGG | - | chr7.4:39400050-39400069 | None:intergenic | 25.0% |
| ! | TTTATTTAGGAAGTCTTCTA+TGG | - | chr7.4:39401029-39401048 | None:intergenic | 25.0% |
| !! | ATATGAGTAGATTTTGCAAA+TGG | - | chr7.4:39400827-39400846 | None:intergenic | 25.0% |
| !! | GTAAGTAAATTTGAGATCTT+AGG | + | chr7.4:39400119-39400138 | MS.gene055151:intron | 25.0% |
| !! | TAAACACCAATTTTACATCT+AGG | + | chr7.4:39400504-39400523 | MS.gene055151:intron | 25.0% |
| !! | TTTTAATGAGAAAAGTTCAG+GGG | - | chr7.4:39400607-39400626 | None:intergenic | 25.0% |
| !!! | TTTATGTGGCTCATTTTTAT+TGG | - | chr7.4:39400768-39400787 | None:intergenic | 25.0% |
| AAATATGAGCAAGAAAAGGT+TGG | + | chr7.4:39399814-39399833 | MS.gene055151:CDS | 30.0% | |
| AATATGAGCAAGAAAAGGTT+GGG | + | chr7.4:39399815-39399834 | MS.gene055151:CDS | 30.0% | |
| AATCCAAAAAGCTATGAGTA+CGG | - | chr7.4:39401270-39401289 | None:intergenic | 30.0% | |
| ACAATTAAATGTGGAGAAGT+GGG | + | chr7.4:39400191-39400210 | MS.gene055151:intron | 30.0% | |
| ACACAAAGAAAATAGAAGAG+GGG | - | chr7.4:39400048-39400067 | None:intergenic | 30.0% | |
| CCAAATGCTTCTTGTATAAT+AGG | - | chr7.4:39401293-39401312 | None:intergenic | 30.0% | |
| TAAAGTTGGACATTTGAACT+TGG | - | chr7.4:39400080-39400099 | None:intergenic | 30.0% | |
| TACAATTAAATGTGGAGAAG+TGG | + | chr7.4:39400190-39400209 | MS.gene055151:intron | 30.0% | |
| TATGGTCAAAATATGTTACG+TGG | + | chr7.4:39400391-39400410 | MS.gene055151:intron | 30.0% | |
| TCAAACACTGCAAAAAGAAA+TGG | - | chr7.4:39401100-39401119 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.4:39399935-39399954 | MS.gene055151:CDS | 30.0% | |
| ! | GCAGATTTTCTTTGACAATT+GGG | - | chr7.4:39401382-39401401 | None:intergenic | 30.0% |
| ! | TTATGTTACTTGTTAGGGTA+TGG | - | chr7.4:39400907-39400926 | None:intergenic | 30.0% |
| !! | CATTTTAGAAAAACATGCAG+GGG | - | chr7.4:39400238-39400257 | None:intergenic | 30.0% |
| !! | CCTATTATACAAGAAGCATT+TGG | + | chr7.4:39401290-39401309 | MS.gene055151:CDS | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7.4:39399781-39399800 | MS.gene055151:CDS | 30.0% |
| !! | GCATTTTAGAAAAACATGCA+GGG | - | chr7.4:39400239-39400258 | None:intergenic | 30.0% |
| !! | TGCATTTTAGAAAAACATGC+AGG | - | chr7.4:39400240-39400259 | None:intergenic | 30.0% |
| AAGTTATCCACAACTCTTCA+AGG | + | chr7.4:39400871-39400890 | MS.gene055151:intron | 35.0% | |
| AATCACAAGTGACTCTGATA+TGG | - | chr7.4:39399914-39399933 | None:intergenic | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | - | chr7.4:39399871-39399890 | None:intergenic | 35.0% | |
| ACTCGTCCTAGATGTAAAAT+TGG | - | chr7.4:39400513-39400532 | None:intergenic | 35.0% | |
| AGTTATCCACAACTCTTCAA+GGG | + | chr7.4:39400872-39400891 | MS.gene055151:intron | 35.0% | |
| ATCAAATAAGGAAGAGGTGA+AGG | + | chr7.4:39399720-39399739 | MS.gene055151:CDS | 35.0% | |
| ATCACAAGTGACTCTGATAT+GGG | - | chr7.4:39399913-39399932 | None:intergenic | 35.0% | |
| ATTTCTTGAGAATGAGCTCA+AGG | + | chr7.4:39401199-39401218 | MS.gene055151:CDS | 35.0% | |
| CAATTAAATGTGGAGAAGTG+GGG | + | chr7.4:39400192-39400211 | MS.gene055151:intron | 35.0% | |
| CAGGAACTTTCTTGTAAACA+GGG | - | chr7.4:39399870-39399889 | None:intergenic | 35.0% | |
| CATAAAACAATGAGAGAGGA+GGG | + | chr7.4:39400557-39400576 | MS.gene055151:intron | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | + | chr7.4:39399756-39399775 | MS.gene055151:CDS | 35.0% | |
| TAGGCATAAAACAATGAGAG+AGG | + | chr7.4:39400553-39400572 | MS.gene055151:intron | 35.0% | |
| TCAAGGACAAATTCTTTGGT+GGG | + | chr7.4:39401216-39401235 | MS.gene055151:CDS | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | + | chr7.4:39399755-39399774 | MS.gene055151:CDS | 35.0% | |
| TTATGCCTAGAGAGAATATG+TGG | - | chr7.4:39400542-39400561 | None:intergenic | 35.0% | |
| TTGGGTGATTGTTGAATTCT+TGG | - | chr7.4:39401364-39401383 | None:intergenic | 35.0% | |
| ! | GCTCGTTATGAAAGTCATTT+TGG | + | chr7.4:39401434-39401453 | MS.gene055151:CDS | 35.0% |
| ! | GGCAGATTTTCTTTGACAAT+TGG | - | chr7.4:39401383-39401402 | None:intergenic | 35.0% |
| ! | TTCATAACGAGCTTTGTAGA+AGG | - | chr7.4:39401426-39401445 | None:intergenic | 35.0% |
| ! | TTCTTTTTGCAGTGTTTGAG+TGG | + | chr7.4:39401101-39401120 | MS.gene055151:intron | 35.0% |
| !! | AAGCTTTGGAAATTCTTCAC+TGG | - | chr7.4:39401330-39401349 | None:intergenic | 35.0% |
| !! | GAGTATTGAGGAAACAAAAG+AGG | + | chr7.4:39401169-39401188 | MS.gene055151:CDS | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7.4:39399780-39399799 | MS.gene055151:CDS | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7.4:39399759-39399778 | MS.gene055151:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7.4:39399766-39399785 | None:intergenic | 40.0% | |
| CAAGGACAAATTCTTTGGTG+GGG | + | chr7.4:39401217-39401236 | MS.gene055151:CDS | 40.0% | |
| CTCAAGGACAAATTCTTTGG+TGG | + | chr7.4:39401215-39401234 | MS.gene055151:CDS | 40.0% | |
| GAGATCTTAGGTGTGTCTTT+GGG | + | chr7.4:39400131-39400150 | MS.gene055151:intron | 40.0% | |
| GAGCTCAAGGACAAATTCTT+TGG | + | chr7.4:39401212-39401231 | MS.gene055151:CDS | 40.0% | |
| GCATAAAACAATGAGAGAGG+AGG | + | chr7.4:39400556-39400575 | MS.gene055151:intron | 40.0% | |
| TAAGGATCAGAAGGCAAGAT+TGG | - | chr7.4:39399970-39399989 | None:intergenic | 40.0% | |
| TACCTTGTCATCTATGAGCT+TGG | - | chr7.4:39400019-39400038 | None:intergenic | 40.0% | |
| TCACACCACATATTCTCTCT+AGG | + | chr7.4:39400534-39400553 | MS.gene055151:intron | 40.0% | |
| TGAGATCTTAGGTGTGTCTT+TGG | + | chr7.4:39400130-39400149 | MS.gene055151:intron | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.4:39399981-39400000 | MS.gene055151:CDS | 40.0% | |
| TGGCTCCAATTGTAAAGCTT+TGG | - | chr7.4:39401344-39401363 | None:intergenic | 40.0% | |
| TTAGAAAAACATGCAGGGGT+CGG | - | chr7.4:39400234-39400253 | None:intergenic | 40.0% | |
| ! | AAGGAAGAGGTGAAGGTTTT+TGG | + | chr7.4:39399727-39399746 | MS.gene055151:CDS | 40.0% |
| ! | AGCTTTGTAGAAGGCCAAAA+GGG | - | chr7.4:39401417-39401436 | None:intergenic | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.4:39399979-39399998 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7.4:39401157-39401176 | MS.gene055151:CDS | 40.0% |
| !! | AGAGGTGAAGGTTTTTGGAT+TGG | + | chr7.4:39399732-39399751 | MS.gene055151:CDS | 40.0% |
| ACTCTTCTTCGAGAAGAGAG+TGG | - | chr7.4:39400640-39400659 | None:intergenic | 45.0% | |
| ATGTCACCCTTGAAGAGTTG+TGG | - | chr7.4:39400881-39400900 | None:intergenic | 45.0% | |
| CAACTCTTCAAGGGTGACAT+AGG | + | chr7.4:39400881-39400900 | MS.gene055151:intron | 45.0% | |
| GACCAAGCTCATAGATGACA+AGG | + | chr7.4:39400014-39400033 | MS.gene055151:CDS | 45.0% | |
| TAGAAAAACATGCAGGGGTC+GGG | - | chr7.4:39400233-39400252 | None:intergenic | 45.0% | |
| TGCAGTGTTTGAGTGGTGTA+CGG | + | chr7.4:39401108-39401127 | MS.gene055151:intron | 45.0% | |
| ! | AAAGAGCCTTGGTTCGTTTC+TGG | + | chr7.4:39399992-39400011 | MS.gene055151:CDS | 45.0% |
| ! | CGAACCAAGGCTCTTTTGTA+AGG | - | chr7.4:39399988-39400007 | None:intergenic | 45.0% |
| ! | CTGCCGTACTCATAGCTTTT+TGG | + | chr7.4:39401264-39401283 | MS.gene055151:CDS | 45.0% |
| ! | GAGCTTTGTAGAAGGCCAAA+AGG | - | chr7.4:39401418-39401437 | None:intergenic | 45.0% |
| !! | GGTGAAGGTTTTTGGATTGG+TGG | + | chr7.4:39399735-39399754 | MS.gene055151:CDS | 45.0% |
| !! | TACATTAATAAAAAAAAATA+TGG | + | chr7.4:39400373-39400392 | MS.gene055151:intron | 5.0% |
| !!! | TAAATAATTTGTTTTTATTT+AGG | - | chr7.4:39401042-39401061 | None:intergenic | 5.0% |
| AAGGCCAAAAGGGTCTCTCT+AGG | - | chr7.4:39401407-39401426 | None:intergenic | 50.0% | |
| AGAAAAACATGCAGGGGTCG+GGG | - | chr7.4:39400232-39400251 | None:intergenic | 50.0% | |
| AGAGAGGAGGGATGTGAGTT+GGG | + | chr7.4:39400569-39400588 | MS.gene055151:intron | 50.0% | |
| CTTGGTCCAGAAACGAACCA+AGG | - | chr7.4:39400001-39400020 | None:intergenic | 50.0% | |
| GGACAAATTCTTTGGTGGGG+AGG | + | chr7.4:39401220-39401239 | MS.gene055151:CDS | 50.0% | |
| TTCTTTGGTGGGGAGGAGAT+TGG | + | chr7.4:39401227-39401246 | MS.gene055151:CDS | 50.0% | |
| GAGAGAGGAGGGATGTGAGT+TGG | + | chr7.4:39400568-39400587 | MS.gene055151:intron | 55.0% | |
| GCCAAAAGGGTCTCTCTAGG+AGG | - | chr7.4:39401404-39401423 | None:intergenic | 55.0% | |
| ! | AGGGATGTGAGTTGGGTGGA+TGG | + | chr7.4:39400576-39400595 | MS.gene055151:intron | 55.0% |
| ! | GCCTCCTAGAGAGACCCTTT+TGG | + | chr7.4:39401400-39401419 | MS.gene055151:CDS | 55.0% |
| ! | GGATGTGAGTTGGGTGGATG+GGG | + | chr7.4:39400578-39400597 | MS.gene055151:intron | 55.0% |
| ! | GGGATGTGAGTTGGGTGGAT+GGG | + | chr7.4:39400577-39400596 | MS.gene055151:intron | 55.0% |
| ! | GAGGAGGGATGTGAGTTGGG+TGG | + | chr7.4:39400572-39400591 | MS.gene055151:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39399715 | 39401466 | 39399715 | ID=MS.gene055151 |
| chr7.4 | mRNA | 39399715 | 39401466 | 39399715 | ID=MS.gene055151.t1;Parent=MS.gene055151 |
| chr7.4 | exon | 39399715 | 39400035 | 39399715 | ID=MS.gene055151.t1.exon1;Parent=MS.gene055151.t1 |
| chr7.4 | CDS | 39399715 | 39400035 | 39399715 | ID=cds.MS.gene055151.t1;Parent=MS.gene055151.t1 |
| chr7.4 | exon | 39401113 | 39401466 | 39401113 | ID=MS.gene055151.t1.exon2;Parent=MS.gene055151.t1 |
| chr7.4 | CDS | 39401113 | 39401466 | 39401113 | ID=cds.MS.gene055151.t1;Parent=MS.gene055151.t1 |
| Gene Sequence |
| Protein sequence |
