Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89392.t1 | XP_013459327.1 | 79.8 | 1656 | 303 | 8 | 1 | 1636 | 1 | 1644 | 0.00E+00 | 2630.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89392.t1 | O15050 | 30.1 | 552 | 300 | 16 | 1136 | 1620 | 1146 | 1678 | 3.0e-46 | 189.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89392.t1 | G8A365 | 79.8 | 1656 | 303 | 8 | 1 | 1636 | 1 | 1644 | 0.0e+00 | 2630.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051279 | MS.gene89392 | 0.814877 | 1.23E-51 | -1.69E-46 |
MS.gene051719 | MS.gene89392 | 0.804723 | 1.88E-49 | -1.69E-46 |
MS.gene051720 | MS.gene89392 | 0.825053 | 5.78E-54 | -1.69E-46 |
MS.gene052519 | MS.gene89392 | 0.804921 | 1.71E-49 | -1.69E-46 |
MS.gene054651 | MS.gene89392 | 0.801932 | 7.13E-49 | -1.69E-46 |
MS.gene055227 | MS.gene89392 | 0.801248 | 9.85E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89392.t1 | MTR_3g436400 | 79.771 | 1656 | 303 | 8 | 1 | 1636 | 1 | 1644 | 0.0 | 2646 |
MS.gene89392.t1 | MTR_0189s0030 | 51.661 | 1686 | 686 | 29 | 40 | 1634 | 1 | 1648 | 0.0 | 1596 |
MS.gene89392.t1 | MTR_3g064190 | 40.092 | 873 | 472 | 19 | 17 | 872 | 14 | 852 | 0.0 | 591 |
MS.gene89392.t1 | MTR_5g080800 | 45.418 | 753 | 259 | 15 | 765 | 1456 | 6 | 667 | 0.0 | 581 |
MS.gene89392.t1 | MTR_5g076440 | 37.785 | 876 | 483 | 17 | 17 | 868 | 21 | 858 | 4.98e-176 | 554 |
MS.gene89392.t1 | MTR_5g076330 | 35.826 | 896 | 500 | 19 | 17 | 885 | 9 | 856 | 4.15e-168 | 532 |
MS.gene89392.t1 | MTR_5g076310 | 37.271 | 872 | 469 | 20 | 18 | 871 | 17 | 828 | 1.96e-167 | 529 |
MS.gene89392.t1 | MTR_5g076300 | 34.419 | 921 | 529 | 22 | 17 | 901 | 16 | 897 | 4.42e-162 | 516 |
MS.gene89392.t1 | MTR_5g076320 | 35.560 | 928 | 472 | 20 | 20 | 897 | 32 | 883 | 1.81e-158 | 506 |
MS.gene89392.t1 | MTR_5g076380 | 37.086 | 906 | 492 | 22 | 17 | 897 | 16 | 868 | 1.40e-157 | 503 |
MS.gene89392.t1 | MTR_5g076500 | 36.751 | 868 | 478 | 21 | 17 | 866 | 11 | 825 | 6.59e-152 | 487 |
MS.gene89392.t1 | MTR_3g064210 | 39.375 | 640 | 315 | 14 | 407 | 1006 | 481 | 1087 | 6.54e-126 | 423 |
MS.gene89392.t1 | MTR_3g064210 | 34.500 | 400 | 234 | 11 | 21 | 409 | 16 | 398 | 1.13e-57 | 219 |
MS.gene89392.t1 | MTR_8g020390 | 34.967 | 306 | 192 | 7 | 553 | 855 | 461 | 762 | 1.41e-47 | 185 |
MS.gene89392.t1 | MTR_8g020390 | 34.967 | 306 | 192 | 7 | 553 | 855 | 749 | 1050 | 4.97e-47 | 185 |
MS.gene89392.t1 | MTR_8g020390 | 34.967 | 306 | 192 | 7 | 553 | 855 | 966 | 1267 | 1.19e-46 | 184 |
MS.gene89392.t1 | MTR_5g053930 | 30.576 | 399 | 262 | 9 | 464 | 856 | 364 | 753 | 2.00e-42 | 169 |
MS.gene89392.t1 | MTR_1g052700 | 32.971 | 276 | 174 | 3 | 610 | 876 | 63 | 336 | 1.05e-39 | 151 |
MS.gene89392.t1 | MTR_2g105760 | 36.140 | 285 | 166 | 6 | 583 | 854 | 1791 | 2072 | 1.12e-39 | 162 |
MS.gene89392.t1 | MTR_5g013820 | 37.218 | 266 | 160 | 5 | 583 | 846 | 641 | 901 | 2.28e-37 | 154 |
MS.gene89392.t1 | MTR_5g013820 | 37.132 | 272 | 152 | 6 | 583 | 846 | 641 | 901 | 2.51e-37 | 154 |
MS.gene89392.t1 | MTR_7g092200 | 30.405 | 296 | 179 | 12 | 559 | 842 | 347 | 627 | 3.25e-23 | 107 |
MS.gene89392.t1 | MTR_2g049990 | 28.571 | 336 | 184 | 14 | 546 | 842 | 230 | 548 | 3.13e-22 | 104 |
MS.gene89392.t1 | MTR_5g006890 | 28.571 | 336 | 184 | 14 | 546 | 842 | 230 | 548 | 3.47e-22 | 103 |
MS.gene89392.t1 | MTR_2g049990 | 28.571 | 336 | 184 | 14 | 546 | 842 | 489 | 807 | 3.87e-22 | 104 |
MS.gene89392.t1 | MTR_5g006890 | 28.571 | 336 | 184 | 14 | 546 | 842 | 489 | 807 | 5.08e-22 | 104 |
MS.gene89392.t1 | MTR_1g040155 | 26.829 | 328 | 213 | 9 | 547 | 858 | 581 | 897 | 1.45e-19 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89392.t1 | AT1G65810 | 36.888 | 1022 | 559 | 24 | 18 | 1004 | 22 | 992 | 0.0 | 602 |
MS.gene89392.t1 | AT1G65810 | 36.888 | 1022 | 559 | 24 | 18 | 1004 | 22 | 992 | 0.0 | 602 |
MS.gene89392.t1 | AT1G65810 | 36.355 | 1004 | 555 | 24 | 18 | 1004 | 22 | 958 | 7.20e-180 | 567 |
MS.gene89392.t1 | AT1G65780 | 35.714 | 1078 | 581 | 28 | 18 | 1032 | 11 | 1039 | 4.28e-172 | 548 |
MS.gene89392.t1 | AT5G37150 | 36.263 | 899 | 479 | 21 | 18 | 890 | 9 | 839 | 6.77e-162 | 513 |
MS.gene89392.t1 | AT5G52090 | 39.589 | 682 | 358 | 12 | 209 | 870 | 8 | 655 | 1.06e-147 | 469 |
MS.gene89392.t1 | AT5G37140 | 39.017 | 692 | 372 | 14 | 197 | 870 | 12 | 671 | 9.81e-144 | 459 |
MS.gene89392.t1 | AT4G05540 | 38.286 | 700 | 359 | 18 | 174 | 837 | 27 | 689 | 1.73e-136 | 439 |
MS.gene89392.t1 | AT5G37165 | 49.541 | 327 | 161 | 3 | 545 | 868 | 78 | 403 | 6.63e-102 | 334 |
MS.gene89392.t1 | AT5G37030 | 54.167 | 288 | 127 | 4 | 580 | 864 | 348 | 633 | 3.35e-92 | 314 |
MS.gene89392.t1 | AT5G37030 | 29.736 | 454 | 215 | 14 | 18 | 458 | 9 | 371 | 2.69e-35 | 145 |
MS.gene89392.t1 | AT2G19120 | 36.120 | 299 | 185 | 6 | 559 | 855 | 753 | 1047 | 1.88e-47 | 186 |
MS.gene89392.t1 | AT4G30100 | 33.604 | 369 | 207 | 10 | 559 | 921 | 916 | 1252 | 1.80e-45 | 181 |
MS.gene89392.t1 | AT4G30100 | 33.604 | 369 | 207 | 10 | 559 | 921 | 916 | 1252 | 1.80e-45 | 181 |
MS.gene89392.t1 | AT4G15570 | 32.278 | 316 | 209 | 5 | 543 | 856 | 446 | 758 | 9.79e-44 | 173 |
MS.gene89392.t1 | AT4G15570 | 32.278 | 316 | 209 | 5 | 543 | 856 | 446 | 758 | 9.79e-44 | 173 |
MS.gene89392.t1 | AT4G15570 | 32.278 | 316 | 209 | 5 | 543 | 856 | 357 | 669 | 1.01e-43 | 172 |
MS.gene89392.t1 | AT4G15570 | 32.278 | 316 | 209 | 5 | 543 | 856 | 357 | 669 | 1.01e-43 | 172 |
MS.gene89392.t1 | AT5G37160 | 28.605 | 430 | 247 | 13 | 24 | 418 | 24 | 428 | 4.85e-42 | 162 |
MS.gene89392.t1 | AT5G47010 | 33.433 | 335 | 199 | 8 | 517 | 846 | 598 | 913 | 1.54e-37 | 155 |
MS.gene89392.t1 | AT1G16800 | 34.182 | 275 | 169 | 5 | 583 | 848 | 1649 | 1920 | 1.59e-37 | 155 |
MS.gene89392.t1 | AT1G16800 | 34.182 | 275 | 169 | 5 | 583 | 848 | 1719 | 1990 | 1.69e-37 | 155 |
MS.gene89392.t1 | AT1G16800 | 34.182 | 275 | 169 | 5 | 583 | 848 | 1607 | 1878 | 1.75e-37 | 155 |
MS.gene89392.t1 | AT2G03270 | 30.584 | 291 | 168 | 12 | 555 | 829 | 339 | 611 | 9.06e-23 | 105 |
MS.gene89392.t1 | AT1G05460 | 28.788 | 330 | 190 | 11 | 547 | 842 | 491 | 809 | 5.14e-22 | 104 |
MS.gene89392.t1 | AT1G05460 | 28.788 | 330 | 190 | 11 | 547 | 842 | 491 | 809 | 9.06e-22 | 103 |
MS.gene89392.t1 | AT5G35970 | 30.201 | 298 | 176 | 11 | 556 | 834 | 638 | 922 | 2.78e-21 | 102 |
MS.gene89392.t1 | AT1G08840 | 27.820 | 266 | 162 | 9 | 584 | 833 | 1037 | 1288 | 3.19e-14 | 79.0 |
MS.gene89392.t1 | AT1G08840 | 27.820 | 266 | 162 | 9 | 584 | 833 | 1050 | 1301 | 3.20e-14 | 79.0 |
MS.gene89392.t1 | AT1G08840 | 27.820 | 266 | 162 | 9 | 584 | 833 | 1018 | 1269 | 3.51e-14 | 79.0 |
MS.gene89392.t1 | AT1G08840 | 27.820 | 266 | 162 | 9 | 584 | 833 | 1053 | 1304 | 4.06e-14 | 78.6 |
Find 250 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCTTCTTGATAAGTTTC+TGG | 0.062862 | 3.3:-32956016 | None:intergenic |
ATTCTACAATAAAGCTTATT+TGG | 0.079007 | 3.3:+32955310 | MS.gene89392:CDS |
AAAGATTCTAAAACAATTTA+AGG | 0.080813 | 3.3:+32957757 | MS.gene89392:CDS |
TAGGCATTGTTTATGGATTT+TGG | 0.099052 | 3.3:+32957212 | MS.gene89392:intron |
GCTATTCGTGATTGTCTTTC+TGG | 0.100211 | 3.3:+32955270 | MS.gene89392:CDS |
TTTGGAAACAAGCTTATTTC+TGG | 0.135032 | 3.3:-32956529 | None:intergenic |
GTGGAGACTAGTTTGGTTTA+TGG | 0.141597 | 3.3:+32959698 | MS.gene89392:CDS |
CCTCCGAATCTGATGATTTA+TGG | 0.150983 | 3.3:+32955193 | MS.gene89392:CDS |
GTGCAAGGGCCTTCAATTTA+AGG | 0.163196 | 3.3:+32959913 | MS.gene89392:CDS |
TGCAAATCATTCACTGATTC+AGG | 0.178217 | 3.3:-32954454 | None:intergenic |
TTTGAAAGGTTAAGTTTATT+TGG | 0.184568 | 3.3:+32956466 | MS.gene89392:CDS |
TCATTGCTAGGCATTGTTTA+TGG | 0.202173 | 3.3:+32957205 | MS.gene89392:intron |
CTCGAGTTTCTTCCAATAAA+TGG | 0.204479 | 3.3:-32954204 | None:intergenic |
TCTAGAAGATATTTCAAAAT+TGG | 0.224789 | 3.3:+32957868 | MS.gene89392:CDS |
ATCTTACAAATACCATTTAT+TGG | 0.237606 | 3.3:+32954192 | MS.gene89392:CDS |
TTCTACAATAAAGCTTATTT+GGG | 0.242111 | 3.3:+32955311 | MS.gene89392:CDS |
ATTTGTATCTTAACTCATTA+AGG | 0.242316 | 3.3:-32954588 | None:intergenic |
AAGGCCCTTGCACTCTAAAA+TGG | 0.255682 | 3.3:-32959903 | None:intergenic |
GTTTGTAATGAAGCTGGTTT+TGG | 0.261210 | 3.3:+32956433 | MS.gene89392:CDS |
AACAAAACAAATCGCCAATT+TGG | 0.267389 | 3.3:-32955488 | None:intergenic |
AACATTACCTGGAGATGTTT+TGG | 0.273184 | 3.3:+32954414 | MS.gene89392:CDS |
GTGGCTGTTGAAAGCGTTTA+TGG | 0.276768 | 3.3:+32958591 | MS.gene89392:CDS |
TGGGAACATTGGAGGGTTTA+GGG | 0.280701 | 3.3:+32959799 | MS.gene89392:CDS |
TGAAGATTTATACAAGAATA+AGG | 0.286280 | 3.3:+32953426 | MS.gene89392:CDS |
CTCATTCAGGTTGAGAAGAT+TGG | 0.290156 | 3.3:+32954136 | MS.gene89392:intron |
GTGGGAACATTGGAGGGTTT+AGG | 0.295908 | 3.3:+32959798 | MS.gene89392:CDS |
CTGAAGAGAAGTTCTGTAAT+TGG | 0.300387 | 3.3:-32957045 | None:intergenic |
TGCAGAGATTTGGAAGGTTT+TGG | 0.306462 | 3.3:+32954473 | MS.gene89392:CDS |
GCACAACTTCTACTTCCTTT+AGG | 0.312309 | 3.3:+32956159 | MS.gene89392:CDS |
GTGAATGATTTGCAGAGATT+TGG | 0.313705 | 3.3:+32954463 | MS.gene89392:CDS |
GAAATAATGTCACATATAAA+AGG | 0.314158 | 3.3:+32959095 | MS.gene89392:CDS |
AAAGATAGCTTTAGCCATTT+CGG | 0.322684 | 3.3:-32957331 | None:intergenic |
TTGTTGGTGACGTTGAGTTC+TGG | 0.325902 | 3.3:+32958681 | MS.gene89392:CDS |
ATTGTTTGCTGCAAAGAAAA+AGG | 0.328726 | 3.3:+32957935 | MS.gene89392:CDS |
GCACCTTATGGCAAGGTTGC+AGG | 0.333093 | 3.3:+32954262 | MS.gene89392:CDS |
TGTGTTCATTGATGAAGTTC+AGG | 0.340598 | 3.3:+32959349 | MS.gene89392:CDS |
AGATTGATCTAATTCTTTCA+TGG | 0.343502 | 3.3:-32957358 | None:intergenic |
GAATCACTTTGTGGCCAAAT+TGG | 0.349067 | 3.3:+32955474 | MS.gene89392:CDS |
CGGAAGAAGTTATAAGAATA+TGG | 0.354427 | 3.3:+32956690 | MS.gene89392:CDS |
AACTCTGTCAAGTGAATGTT+TGG | 0.355195 | 3.3:-32956066 | None:intergenic |
ATACTACCTTTACAACTTCC+AGG | 0.359585 | 3.3:+32956257 | MS.gene89392:CDS |
TGAGTGTCAACTTTCTTCTA+TGG | 0.366111 | 3.3:+32956307 | MS.gene89392:CDS |
TATTCTTTCATAAATGTTGC+CGG | 0.367566 | 3.3:+32956643 | MS.gene89392:CDS |
GAAGAAATCGTGTGCCTTGT+TGG | 0.368005 | 3.3:+32959860 | MS.gene89392:CDS |
CTCCGAATCTGATGATTTAT+GGG | 0.370064 | 3.3:+32955194 | MS.gene89392:CDS |
TACAGTAGGCAATATCTTCC+AGG | 0.381051 | 3.3:+32956604 | MS.gene89392:CDS |
TTTAGTACTTGTCCAGCATA+TGG | 0.382651 | 3.3:-32956900 | None:intergenic |
TGTTCATTTGTTAACTCAAA+TGG | 0.386474 | 3.3:-32958459 | None:intergenic |
CTGTAGCATGTTTGAACATT+CGG | 0.391528 | 3.3:-32956586 | None:intergenic |
TCTCTTCTTGATAAGTTTCT+GGG | 0.391767 | 3.3:-32956015 | None:intergenic |
CTGATGTTTGATTTGACATT+GGG | 0.392100 | 3.3:+32958933 | MS.gene89392:CDS |
AAAGATTTGAATCATCATAC+TGG | 0.394273 | 3.3:+32959018 | MS.gene89392:CDS |
TTACAATGACTATGGCTTCA+TGG | 0.395001 | 3.3:+32953366 | MS.gene89392:CDS |
ATCTTTCAATTGCAATGCTC+TGG | 0.395556 | 3.3:-32955790 | None:intergenic |
CAAGGTTGCAGGACTTAAAC+TGG | 0.396535 | 3.3:+32954273 | MS.gene89392:CDS |
TAATGCCAGAGGATTCTTCT+TGG | 0.397792 | 3.3:+32955973 | MS.gene89392:CDS |
CTCATACACCAAGCACCTTA+TGG | 0.398328 | 3.3:+32954250 | MS.gene89392:CDS |
TCCTTGATTGCAATGTTTGT+TGG | 0.398449 | 3.3:-32955420 | None:intergenic |
CTGTATAACTTGAATATTGA+AGG | 0.400438 | 3.3:+32954352 | MS.gene89392:CDS |
GTTGAAGGTGGAGACTAGTT+TGG | 0.400621 | 3.3:+32959691 | MS.gene89392:CDS |
GAGTCCATCACTCACTATCT+TGG | 0.400903 | 3.3:+32954169 | MS.gene89392:CDS |
ATTTGGGGTCCTCCTGGGAC+TGG | 0.401612 | 3.3:+32955327 | MS.gene89392:CDS |
CCAGGTGATATGCTGTTGTT+TGG | 0.401768 | 3.3:+32955513 | MS.gene89392:CDS |
AATGATAGACTTGATGTTAG+AGG | 0.405269 | 3.3:+32955540 | MS.gene89392:CDS |
TGACAATGTTTGGAAGAGTT+TGG | 0.411964 | 3.3:+32957260 | MS.gene89392:CDS |
ATATTGAAGGCTGGGAAAAC+AGG | 0.413382 | 3.3:+32954365 | MS.gene89392:CDS |
GGCAACATTTATGAAAGAAT+AGG | 0.415373 | 3.3:-32956641 | None:intergenic |
AAGCTTATTTGGGGTCCTCC+TGG | 0.417322 | 3.3:+32955321 | MS.gene89392:CDS |
GTGAATGTGAAATCAATTGA+TGG | 0.418723 | 3.3:+32956975 | MS.gene89392:CDS |
ACCATGTTTCTTCTTTCAAA+AGG | 0.425023 | 3.3:+32958724 | MS.gene89392:CDS |
TAGGGAAGATCAAGTAATCT+TGG | 0.425862 | 3.3:+32959817 | MS.gene89392:CDS |
CATGAAGGAAAATAATTTGT+TGG | 0.426320 | 3.3:+32960091 | MS.gene89392:CDS |
TTGCTTCTTCTCCTTTGAAA+AGG | 0.426422 | 3.3:+32960045 | MS.gene89392:CDS |
TTCTCCTTTGAAAAGGCGAT+GGG | 0.427960 | 3.3:+32960052 | MS.gene89392:CDS |
ATTCACTTGACAGAGTTGAT+TGG | 0.429132 | 3.3:+32956072 | MS.gene89392:CDS |
TTCTGGAGTTTCTGAGAGAA+AGG | 0.429666 | 3.3:+32955760 | MS.gene89392:CDS |
GGACTGGAGGTGCTACGTTC+AGG | 0.431216 | 3.3:+32957820 | MS.gene89392:CDS |
CCTAGGAGTACATTTGTACT+AGG | 0.432067 | 3.3:+32958501 | MS.gene89392:CDS |
CGGCCAGTACGTGTGTAATC+TGG | 0.432524 | 3.3:-32958414 | None:intergenic |
AAGGCACACGATTTCTTCCT+TGG | 0.432629 | 3.3:-32959855 | None:intergenic |
AGAATGGCGTGATTGATTCC+TGG | 0.437136 | 3.3:-32956275 | None:intergenic |
TTTAAGGTTTGTAATGAAGC+TGG | 0.440489 | 3.3:+32956427 | MS.gene89392:intron |
TCCAACAAACATTGCAATCA+AGG | 0.441330 | 3.3:+32955419 | MS.gene89392:CDS |
AAGAAATCGTGTGCCTTGTT+GGG | 0.442205 | 3.3:+32959861 | MS.gene89392:CDS |
AGAAGATTGATCTTACATCT+TGG | 0.442831 | 3.3:-32959487 | None:intergenic |
GCGCTTCCTGGCCAGCTCAA+TGG | 0.443131 | 3.3:-32958252 | None:intergenic |
GCAACATTTATGAAAGAATA+GGG | 0.443437 | 3.3:-32956640 | None:intergenic |
GAATTTCCATTGAGCTGGCC+AGG | 0.447514 | 3.3:+32958246 | MS.gene89392:CDS |
CTAGAGCAAGGAAGAGGTTG+TGG | 0.447577 | 3.3:+32960204 | MS.gene89392:CDS |
TTGTGAAATGTTATCACAAG+TGG | 0.453309 | 3.3:-32958903 | None:intergenic |
ATCAATCACGCCATTCTTGT+TGG | 0.455018 | 3.3:+32956281 | MS.gene89392:CDS |
CTTCTCCTTTGAAAAGGCGA+TGG | 0.455090 | 3.3:+32960051 | MS.gene89392:CDS |
AGTCCTGCAACCTTGCCATA+AGG | 0.458867 | 3.3:-32954265 | None:intergenic |
AGAGCGCCTTACAATGACTA+TGG | 0.460983 | 3.3:+32953358 | MS.gene89392:CDS |
ATTCTAAAACAATTTAAGGT+TGG | 0.461529 | 3.3:+32957761 | MS.gene89392:CDS |
AGCTTATTTGGGGTCCTCCT+GGG | 0.462087 | 3.3:+32955322 | MS.gene89392:CDS |
AGAACTACATTTGTTCTTTG+CGG | 0.462352 | 3.3:-32957080 | None:intergenic |
GGGGATACAGCTCAAACAAT+TGG | 0.465389 | 3.3:+32959443 | MS.gene89392:CDS |
ATCAATTGGGAATTAAAATG+AGG | 0.467717 | 3.3:-32959041 | None:intergenic |
TTCATAGATTGTATAACAAT+AGG | 0.467858 | 3.3:-32959728 | None:intergenic |
GGCATAGTTTCTCCATATGC+TGG | 0.469815 | 3.3:+32956888 | MS.gene89392:CDS |
ATCCCATAAATCATCAGATT+CGG | 0.471434 | 3.3:-32955196 | None:intergenic |
AATTAAACCATTCTCACCTA+TGG | 0.472466 | 3.3:-32958832 | None:intergenic |
AGAACATAACTATAGGTACT+TGG | 0.473489 | 3.3:+32955857 | MS.gene89392:CDS |
TCTGATGTTTGATTTGACAT+TGG | 0.474682 | 3.3:+32958932 | MS.gene89392:CDS |
TTCAAGAGACGTTGTTTCAA+GGG | 0.474769 | 3.3:+32955907 | MS.gene89392:CDS |
AAATTCAATTGACATGTTGA+AGG | 0.475198 | 3.3:+32959676 | MS.gene89392:CDS |
AAGATCAAGTAATCTTGGTA+AGG | 0.476025 | 3.3:+32959822 | MS.gene89392:CDS |
ACAAGTGGATAAATGTTAGT+TGG | 0.476468 | 3.3:-32958888 | None:intergenic |
TGCAGGTCCATAGGTGAGAA+TGG | 0.477793 | 3.3:+32958825 | MS.gene89392:intron |
TAACTTGAATATTGAAGGCT+GGG | 0.481217 | 3.3:+32954357 | MS.gene89392:CDS |
GTGGATTACAGTGGCGATGA+TGG | 0.482223 | 3.3:+32956945 | MS.gene89392:CDS |
TATCTTCCAGGGCCAATGTA+TGG | 0.483128 | 3.3:+32956616 | MS.gene89392:CDS |
ATAACTTGAATATTGAAGGC+TGG | 0.484194 | 3.3:+32954356 | MS.gene89392:CDS |
AGAAACTTTGTGCAGCCTAA+AGG | 0.488611 | 3.3:-32956174 | None:intergenic |
CCTAGTACAAATGTACTCCT+AGG | 0.488986 | 3.3:-32958501 | None:intergenic |
TTTCAAGAGACGTTGTTTCA+AGG | 0.489965 | 3.3:+32955906 | MS.gene89392:CDS |
ACCGGTGTTACGGCAATTGT+TGG | 0.491504 | 3.3:+32958665 | MS.gene89392:CDS |
AGATCAAGAGACCGGTGTTA+CGG | 0.491548 | 3.3:+32958655 | MS.gene89392:CDS |
TTGCAAATGGGTGGAGACCT+AGG | 0.492496 | 3.3:+32957699 | MS.gene89392:CDS |
TTATGCACTCATTTACCAAT+GGG | 0.496233 | 3.3:+32955825 | MS.gene89392:CDS |
TTCTGTGCTGCATGTTGAGA+AGG | 0.497973 | 3.3:-32956501 | None:intergenic |
GTTGAGACAATGAAGGTTGA+AGG | 0.499098 | 3.3:+32960323 | MS.gene89392:CDS |
ATCAATCTCTTCTCTTCCAC+CGG | 0.499780 | 3.3:-32956662 | None:intergenic |
GTTAGTTGGAAGATCAGAAA+AGG | 0.499830 | 3.3:-32958874 | None:intergenic |
TGCAAATGGGTGGAGACCTA+GGG | 0.503466 | 3.3:+32957700 | MS.gene89392:CDS |
ATGAAGCCATAGTCATTGTA+AGG | 0.503755 | 3.3:-32953364 | None:intergenic |
CTCCTTTGAAAAGGCGATGG+GGG | 0.507076 | 3.3:+32960054 | MS.gene89392:CDS |
TGGTAGAATTTCCATTGAGC+TGG | 0.507474 | 3.3:+32958241 | MS.gene89392:CDS |
ACACTCATCGCCAACAAGAA+TGG | 0.508254 | 3.3:-32956291 | None:intergenic |
TGTAGCATGGCTTGCTACAA+AGG | 0.508780 | 3.3:+32956851 | MS.gene89392:intron |
TTGGGAGAAGCTTATTTGAA+AGG | 0.508811 | 3.3:+32956452 | MS.gene89392:CDS |
AATAGGAGAATAATGGAAAG+AGG | 0.511693 | 3.3:+32953319 | None:intergenic |
TTATTTCCTTGCAGGTCCAT+AGG | 0.512817 | 3.3:+32958816 | MS.gene89392:intron |
TGAACTAAAACAACTGTATG+TGG | 0.514070 | 3.3:+32960175 | MS.gene89392:CDS |
TTGATTCCTGGAAGTTGTAA+AGG | 0.516880 | 3.3:-32956263 | None:intergenic |
GTACTAGGTCGGTCAGGTAC+AGG | 0.517698 | 3.3:+32958516 | MS.gene89392:CDS |
GTTATGCACTCATTTACCAA+TGG | 0.517745 | 3.3:+32955824 | MS.gene89392:CDS |
GGTTACAACGGTGGGAACAT+TGG | 0.518954 | 3.3:+32959788 | MS.gene89392:CDS |
CAACCTTGCCATAAGGTGCT+TGG | 0.520426 | 3.3:-32954258 | None:intergenic |
TAGGGACCATACATTGGCCC+TGG | 0.522828 | 3.3:-32956622 | None:intergenic |
ATCGTTAGAGAATCACTTTG+TGG | 0.523252 | 3.3:+32955465 | MS.gene89392:CDS |
CAATAGAGATAGTGAAGGAC+TGG | 0.523411 | 3.3:+32957804 | MS.gene89392:CDS |
CAAGAGCTTGTTTCCCAACA+AGG | 0.523544 | 3.3:-32959874 | None:intergenic |
GCCAAAACCAAAACATCTCC+AGG | 0.525677 | 3.3:-32954421 | None:intergenic |
GAACAAATGTAGTTCTTACA+AGG | 0.526128 | 3.3:+32957087 | MS.gene89392:CDS |
AAATACCAAGAAGAATCCTC+TGG | 0.527799 | 3.3:-32955978 | None:intergenic |
ACAACGGTGGGAACATTGGA+GGG | 0.527945 | 3.3:+32959792 | MS.gene89392:CDS |
TGCTGATAAAGACACCGAAA+TGG | 0.529238 | 3.3:+32957317 | MS.gene89392:CDS |
TACAACGGTGGGAACATTGG+AGG | 0.535147 | 3.3:+32959791 | MS.gene89392:CDS |
TCTCGAGAATCGGAAGAAGA+AGG | 0.535386 | 3.3:+32958983 | MS.gene89392:CDS |
GCAGAAATGGTTACAACGGT+GGG | 0.538108 | 3.3:+32959780 | MS.gene89392:CDS |
TGTTTCTGATTATCACGTCA+TGG | 0.538639 | 3.3:+32955680 | MS.gene89392:CDS |
TGTTCTAAAATGTGACCCAT+TGG | 0.539138 | 3.3:-32955840 | None:intergenic |
TTCTCTAGTTGAGACAATGA+AGG | 0.539182 | 3.3:+32960316 | MS.gene89392:CDS |
CTTTAACTAGAGCAAGGAAG+AGG | 0.541846 | 3.3:+32960198 | MS.gene89392:CDS |
TCACCAGATTACACACGTAC+TGG | 0.545198 | 3.3:+32958411 | MS.gene89392:CDS |
ACAACCGTGTTCAACAGCTC+AGG | 0.547925 | 3.3:+32955589 | MS.gene89392:CDS |
TTCAATTGACATGTTGAAGG+TGG | 0.552139 | 3.3:+32959679 | MS.gene89392:CDS |
TTGATCTCCATCGTAGGTTG+AGG | 0.553047 | 3.3:+32959294 | MS.gene89392:CDS |
ACGTTCAGGTTCTCAAGATG+TGG | 0.553409 | 3.3:+32957834 | MS.gene89392:CDS |
ACATTTGTACTAGGTCGGTC+AGG | 0.555065 | 3.3:+32958510 | MS.gene89392:CDS |
TGCTGTTGAGATCAAGAGAC+CGG | 0.556431 | 3.3:+32958647 | MS.gene89392:CDS |
ATTGTTATACAATCTATGAA+TGG | 0.556649 | 3.3:+32959731 | MS.gene89392:CDS |
GAGCCGTATAAAACATTACC+TGG | 0.556713 | 3.3:+32954403 | MS.gene89392:CDS |
TGATATCTCGTTCACCACCT+TGG | 0.558113 | 3.3:-32957001 | None:intergenic |
TGAGAACGATGGCGAGAACG+TGG | 0.560451 | 3.3:+32954525 | MS.gene89392:CDS |
CGTCTCTTGAAATGAGTCAA+GGG | 0.569100 | 3.3:-32955895 | None:intergenic |
TTGAAAGGCTTGCAAATGGG+TGG | 0.571283 | 3.3:+32957690 | MS.gene89392:CDS |
GGCAGAAATGGTTACAACGG+TGG | 0.572779 | 3.3:+32959779 | MS.gene89392:CDS |
GTGCTTGATTCCAAGAATCG+TGG | 0.574678 | 3.3:+32957282 | MS.gene89392:CDS |
AGCATAAAAGCAGCTGAGAG+TGG | 0.574731 | 3.3:+32959119 | MS.gene89392:CDS |
ATTTCGACACTACGTCCCCT+AGG | 0.576847 | 3.3:-32957716 | None:intergenic |
TCAAGAGAAACTAGCAAGGG+TGG | 0.579440 | 3.3:+32956926 | MS.gene89392:CDS |
ATTTGTAGAAATGTTGAAGA+GGG | 0.580895 | 3.3:+32959407 | MS.gene89392:CDS |
TTGAAGAGACTAGGAACGAA+AGG | 0.581501 | 3.3:+32955720 | MS.gene89392:CDS |
GAAGAGGTTGTGGATTTGTG+AGG | 0.581622 | 3.3:+32960214 | MS.gene89392:CDS |
CTTCAGAAATACAATGTGGA+AGG | 0.583032 | 3.3:+32957410 | MS.gene89392:CDS |
AAATCAATTGATGGTTTCCA+AGG | 0.583335 | 3.3:+32956984 | MS.gene89392:CDS |
AAATATCTTCTAGAGGCACT+AGG | 0.584691 | 3.3:-32957859 | None:intergenic |
GTAAAATAGTTACCTTCCCT+AGG | 0.586024 | 3.3:+32958484 | MS.gene89392:CDS |
AGATCAAGTAATCTTGGTAA+GGG | 0.588630 | 3.3:+32959823 | MS.gene89392:CDS |
TACAGCTCAAACAATTGGAA+GGG | 0.590099 | 3.3:+32959448 | MS.gene89392:CDS |
TCAATTGATGGTTTCCAAGG+TGG | 0.591753 | 3.3:+32956987 | MS.gene89392:CDS |
ACAAAGGAGAAAGTATCCAT+TGG | 0.592137 | 3.3:+32956867 | MS.gene89392:CDS |
ATGATTTGCAGAGATTTGGA+AGG | 0.593297 | 3.3:+32954467 | MS.gene89392:CDS |
AGCAACTCTATGCTCAAGCA+TGG | 0.595501 | 3.3:+32954225 | MS.gene89392:CDS |
CTGTAATCTAATAATGCCAG+AGG | 0.597320 | 3.3:+32955962 | MS.gene89392:CDS |
CTAGTACAAATGTACTCCTA+GGG | 0.598368 | 3.3:-32958500 | None:intergenic |
GGAGTACATTTGTACTAGGT+CGG | 0.598595 | 3.3:+32958505 | MS.gene89392:CDS |
ACCAACAATTGCCGTAACAC+CGG | 0.598855 | 3.3:-32958666 | None:intergenic |
AAAGAATAGGGACCATACAT+TGG | 0.600931 | 3.3:-32956628 | None:intergenic |
CCAAACAACAGCATATCACC+TGG | 0.607452 | 3.3:-32955513 | None:intergenic |
ACGTCTCTTGAAATGAGTCA+AGG | 0.607988 | 3.3:-32955896 | None:intergenic |
AGATCCAAGATAGTGAGTGA+TGG | 0.608358 | 3.3:-32954173 | None:intergenic |
GGTGATTTAGTTGAGTCTGA+AGG | 0.610182 | 3.3:+32958321 | MS.gene89392:CDS |
ATAGTGAGTGATGGACTCAA+AGG | 0.612036 | 3.3:-32954164 | None:intergenic |
GAGGTTGTGGATTTGTGAGG+AGG | 0.612974 | 3.3:+32960217 | MS.gene89392:CDS |
ACAGTAGGCAATATCTTCCA+GGG | 0.614126 | 3.3:+32956605 | MS.gene89392:CDS |
CAACCGTGTTCAACAGCTCA+GGG | 0.615676 | 3.3:+32955590 | MS.gene89392:CDS |
TCTACAATAAAGCTTATTTG+GGG | 0.616573 | 3.3:+32955312 | MS.gene89392:CDS |
ATGTTCAAACATGCTACAGT+AGG | 0.617819 | 3.3:+32956590 | MS.gene89392:CDS |
TTGTAATTGATCTCCATCGT+AGG | 0.618294 | 3.3:+32959288 | MS.gene89392:CDS |
GAGTGGTAAGCTGAGTCGTG+AGG | 0.620826 | 3.3:+32959136 | MS.gene89392:CDS |
ACAGCTCAAACAATTGGAAG+GGG | 0.621908 | 3.3:+32959449 | MS.gene89392:CDS |
CATTTGTAGAAATGTTGAAG+AGG | 0.622542 | 3.3:+32959406 | MS.gene89392:CDS |
GGAAGAGAAGAGATTGATGA+CGG | 0.622607 | 3.3:+32956667 | MS.gene89392:CDS |
ATTCCCTGAGCTGTTGAACA+CGG | 0.622825 | 3.3:-32955593 | None:intergenic |
ATACAGCTCAAACAATTGGA+AGG | 0.624276 | 3.3:+32959447 | MS.gene89392:CDS |
AACAAATGTAGTTCTTACAA+GGG | 0.626539 | 3.3:+32957088 | MS.gene89392:CDS |
AGTTGGTACTACTAATACAA+CGG | 0.629327 | 3.3:+32958296 | MS.gene89392:CDS |
ATGTAGTTCTTACAAGGGCT+AGG | 0.629488 | 3.3:+32957093 | MS.gene89392:CDS |
TTTCGGTCCTCAACCTACGA+TGG | 0.629683 | 3.3:-32959301 | None:intergenic |
ATGTGGCTTTAACTAGAGCA+AGG | 0.630690 | 3.3:+32960192 | MS.gene89392:CDS |
GGTACTACTAATACAACGGA+GGG | 0.631396 | 3.3:+32958300 | MS.gene89392:CDS |
AGTGGACTCTACATCACTGA+TGG | 0.631720 | 3.3:+32954661 | MS.gene89392:CDS |
TCTCCTTTGAAAAGGCGATG+GGG | 0.633135 | 3.3:+32960053 | MS.gene89392:CDS |
AGGAGAATAATGGAAAGAGG+AGG | 0.633587 | 3.3:+32953322 | None:intergenic |
TACAAATGTACTCCTAGGGA+AGG | 0.633656 | 3.3:-32958496 | None:intergenic |
ATATGGAGAAACTATGCCAA+TGG | 0.634266 | 3.3:-32956883 | None:intergenic |
TTTGGCAGAAATGGTTACAA+CGG | 0.635872 | 3.3:+32959776 | MS.gene89392:CDS |
ACACCAAGCACCTTATGGCA+AGG | 0.637539 | 3.3:+32954255 | MS.gene89392:CDS |
TTTGTGCAACGACGATGATG+GGG | 0.637784 | 3.3:+32954708 | MS.gene89392:CDS |
CGTTCAGGTTCTCAAGATGT+GGG | 0.638090 | 3.3:+32957835 | MS.gene89392:CDS |
AATTCAAGAGAAACTAGCAA+GGG | 0.638178 | 3.3:+32956923 | MS.gene89392:CDS |
CCATAAATCATCAGATTCGG+AGG | 0.638599 | 3.3:-32955193 | None:intergenic |
GATTATATATGAGTACATGA+AGG | 0.640035 | 3.3:+32960076 | MS.gene89392:CDS |
TCTTTCATAAATGTTGCCGG+TGG | 0.646964 | 3.3:+32956646 | MS.gene89392:CDS |
AAATTCAAGAGAAACTAGCA+AGG | 0.647839 | 3.3:+32956922 | MS.gene89392:CDS |
TGGCCGTGATGATATTGAAG+TGG | 0.647843 | 3.3:+32958431 | MS.gene89392:CDS |
TAGAGATAGTGAAGGACTGG+AGG | 0.648090 | 3.3:+32957807 | MS.gene89392:CDS |
ATGACAAGGTTGAAGAGACT+AGG | 0.654683 | 3.3:+32955711 | MS.gene89392:CDS |
TCATGGAGAACGAGATGACA+AGG | 0.657425 | 3.3:+32955697 | MS.gene89392:CDS |
AAATGAGAAAATACACCATG+TGG | 0.657753 | 3.3:+32958572 | MS.gene89392:CDS |
AAACGCTTTCAACAGCCACA+TGG | 0.667918 | 3.3:-32958587 | None:intergenic |
AATCCACTTCAATATCATCA+CGG | 0.668379 | 3.3:-32958434 | None:intergenic |
ACGTGTGTAATCTGGTGAGA+TGG | 0.674427 | 3.3:-32958406 | None:intergenic |
AGAGAAGAGATTGATGACGG+CGG | 0.675042 | 3.3:+32956670 | MS.gene89392:CDS |
ATGTTTGGCAATTTCCAATG+CGG | 0.677835 | 3.3:-32956051 | None:intergenic |
GAACTTTAGTACTCATGCCG+AGG | 0.678831 | 3.3:+32959604 | MS.gene89392:CDS |
GGTAAGGGATGATTCTACCA+AGG | 0.679324 | 3.3:+32959838 | MS.gene89392:CDS |
GTGTTCAATAGAGATAGTGA+AGG | 0.681869 | 3.3:+32957799 | MS.gene89392:CDS |
ATACTGAAGAATTTGCACAA+AGG | 0.686126 | 3.3:+32956736 | MS.gene89392:CDS |
TGAAGTTCAGGATCTAACAA+TGG | 0.689609 | 3.3:+32959361 | MS.gene89392:CDS |
GCAAATGGGTGGAGACCTAG+GGG | 0.697076 | 3.3:+32957701 | MS.gene89392:CDS |
TGGTACTACTAATACAACGG+AGG | 0.701416 | 3.3:+32958299 | MS.gene89392:CDS |
TCATCTTCAGAAATACAATG+TGG | 0.705420 | 3.3:+32957406 | MS.gene89392:CDS |
GAAAACAGGTTTATTCATCG+AGG | 0.710932 | 3.3:+32954379 | MS.gene89392:CDS |
TGGACAGGAGATGAGAACGA+TGG | 0.716440 | 3.3:+32954514 | MS.gene89392:CDS |
CTAGCAAGGGTGGATTACAG+TGG | 0.718131 | 3.3:+32956936 | MS.gene89392:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 32953331 | 32960349 | 32953331 | ID=MS.gene89392 |
chr3.3 | mRNA | 32953331 | 32960349 | 32953331 | ID=MS.gene89392.t1;Parent=MS.gene89392 |
chr3.3 | exon | 32953331 | 32953447 | 32953331 | ID=MS.gene89392.t1.exon1;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32953331 | 32953447 | 32953331 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32954145 | 32954729 | 32954145 | ID=MS.gene89392.t1.exon2;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32954145 | 32954729 | 32954145 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32955171 | 32956340 | 32955171 | ID=MS.gene89392.t1.exon3;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32955171 | 32956340 | 32955171 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32956433 | 32956757 | 32956433 | ID=MS.gene89392.t1.exon4;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32956433 | 32956757 | 32956433 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32956856 | 32957114 | 32956856 | ID=MS.gene89392.t1.exon5;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32956856 | 32957114 | 32956856 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32957215 | 32957431 | 32957215 | ID=MS.gene89392.t1.exon6;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32957215 | 32957431 | 32957215 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32957668 | 32957966 | 32957668 | ID=MS.gene89392.t1.exon7;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32957668 | 32957966 | 32957668 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32958239 | 32958745 | 32958239 | ID=MS.gene89392.t1.exon8;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32958239 | 32958745 | 32958239 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32958830 | 32959934 | 32958830 | ID=MS.gene89392.t1.exon9;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32958830 | 32959934 | 32958830 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
chr3.3 | exon | 32960023 | 32960349 | 32960023 | ID=MS.gene89392.t1.exon10;Parent=MS.gene89392.t1 |
chr3.3 | CDS | 32960023 | 32960349 | 32960023 | ID=cds.MS.gene89392.t1;Parent=MS.gene89392.t1 |
Gene Sequence |
Protein sequence |