Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89405.t1 | XP_013459516.1 | 93.2 | 427 | 29 | 0 | 1 | 427 | 1 | 427 | 4.80E-242 | 846.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89405.t1 | Q9C7Z9 | 45.2 | 438 | 222 | 7 | 4 | 427 | 5 | 438 | 1.6e-105 | 384.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89405.t1 | A0A072UV98 | 93.2 | 427 | 29 | 0 | 1 | 427 | 1 | 427 | 3.5e-242 | 846.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049794 | MS.gene89405 | 0.801795 | 7.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 402 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACACACTTTGTGTTATT+TGG | 0.142435 | 3.3:+32389548 | None:intergenic |
| AACATCCAAGCTCTAATTTA+TGG | 0.143771 | 3.3:-32388946 | MS.gene89405:CDS |
| TTCAAGATGATCAAGAATTT+TGG | 0.210650 | 3.3:-32389338 | MS.gene89405:CDS |
| CCAACGAACCAAAGTAAAAT+TGG | 0.255453 | 3.3:+32391644 | None:intergenic |
| TCTGCCATTCATGGTTTATT+CGG | 0.256799 | 3.3:-32394163 | MS.gene89405:CDS |
| TTAGAGTTATTATCATATTC+TGG | 0.265014 | 3.3:-32389220 | MS.gene89405:intron |
| GTAACCTCATAGAGTTCTTT+TGG | 0.276248 | 3.3:+32389749 | None:intergenic |
| GATCAATAAAGGGATTTCTT+TGG | 0.279427 | 3.3:+32391666 | None:intergenic |
| GAACAGGTTGTCGAATTATC+TGG | 0.296761 | 3.3:+32389358 | None:intergenic |
| TTTAATGCTTCTGCCATTCA+TGG | 0.306015 | 3.3:-32394172 | MS.gene89405:CDS |
| ATCAATAAAGGGATTTCTTT+GGG | 0.306892 | 3.3:+32391667 | None:intergenic |
| AAGTAAAATTGGATCAATAA+AGG | 0.309391 | 3.3:+32391655 | None:intergenic |
| GAGCCACCACCTATGTAAAA+TGG | 0.310655 | 3.3:+32390437 | None:intergenic |
| TAATCGTCATCCATTGTTAA+TGG | 0.320811 | 3.3:+32390750 | None:intergenic |
| CTTCCATTCAAGCTTGAAAC+AGG | 0.320931 | 3.3:-32394102 | MS.gene89405:CDS |
| ACATGAGCACACATGATAAA+TGG | 0.322373 | 3.3:-32388541 | MS.gene89405:CDS |
| CTGCCATTCATGGTTTATTC+GGG | 0.352819 | 3.3:-32394162 | MS.gene89405:CDS |
| ATCATATTCTGGTCGACATA+TGG | 0.356883 | 3.3:-32389209 | MS.gene89405:CDS |
| CACCCTGTTTCAAGCTTGAA+TGG | 0.358249 | 3.3:+32394099 | None:intergenic |
| ATAGGTGGTGGCTCATATTC+AGG | 0.362426 | 3.3:-32390428 | MS.gene89405:CDS |
| TCTATTGTCAAGAAACTTCC+TGG | 0.362765 | 3.3:-32394138 | MS.gene89405:CDS |
| TATGGATTCAATTTAAGCTT+TGG | 0.364416 | 3.3:+32390714 | None:intergenic |
| AATGGATTTGAGCTAAACTT+TGG | 0.381264 | 3.3:+32390455 | None:intergenic |
| CTTTGGTTCGTTGGAGGTCC+AGG | 0.395793 | 3.3:-32391635 | MS.gene89405:CDS |
| AATTCTTGATCATCTTGAAC+AGG | 0.398440 | 3.3:+32389342 | None:intergenic |
| ACATCCAAGCTCTAATTTAT+GGG | 0.400923 | 3.3:-32388945 | MS.gene89405:intron |
| AGTAAAATTGGATCAATAAA+GGG | 0.403601 | 3.3:+32391656 | None:intergenic |
| AAGCTTAAATTGAATCCATA+TGG | 0.406503 | 3.3:-32390711 | MS.gene89405:CDS |
| TCACGTTTATATGCTTATAC+AGG | 0.423746 | 3.3:+32389804 | None:intergenic |
| CACAACTGAGTACACAATCT+TGG | 0.425607 | 3.3:-32388577 | MS.gene89405:CDS |
| GTCATTGGAGGAAAATTGTA+AGG | 0.427277 | 3.3:-32389591 | MS.gene89405:CDS |
| AACATATGTGTCCAACCATA+TGG | 0.429002 | 3.3:+32390696 | None:intergenic |
| CTTACTTTGATGTTTATATG+TGG | 0.434551 | 3.3:+32389946 | None:intergenic |
| TCATATTCTGGTCGACATAT+GGG | 0.442425 | 3.3:-32389208 | MS.gene89405:CDS |
| AGACTATATACTTGCCTTCA+CGG | 0.450619 | 3.3:+32387849 | None:intergenic |
| AGATGCAGCTGTATTGTGTT+AGG | 0.452210 | 3.3:-32394198 | MS.gene89405:CDS |
| CAATTTAAATAGGGAACTAA+AGG | 0.455614 | 3.3:-32389054 | MS.gene89405:intron |
| TTTCCGGTTGTGTAGTGTGA+TGG | 0.456902 | 3.3:-32394226 | None:intergenic |
| TGCTTATACAGGTCAACAGC+AGG | 0.461979 | 3.3:+32389815 | None:intergenic |
| AATTTAAATAGGGAACTAAA+GGG | 0.469468 | 3.3:-32389053 | MS.gene89405:intron |
| CGAATTATCTGGTTTACAGC+AGG | 0.475505 | 3.3:+32389369 | None:intergenic |
| GTTACCCATAAATTAGAGCT+TGG | 0.495987 | 3.3:+32388941 | None:intergenic |
| TTTGTTGAAGGTCAAGTAGC+CGG | 0.506940 | 3.3:-32388509 | MS.gene89405:CDS |
| TTCCGGTTGTGTAGTGTGAT+GGG | 0.507466 | 3.3:-32394225 | None:intergenic |
| TTGTTGAAGGTCAAGTAGCC+GGG | 0.522863 | 3.3:-32388508 | MS.gene89405:intron |
| GAACCCGAATAAACCATGAA+TGG | 0.531753 | 3.3:+32394159 | None:intergenic |
| TATAATGTTGCAGTCATTGG+AGG | 0.537774 | 3.3:-32389603 | MS.gene89405:intron |
| GATTCAATTTAAGCTTTGGA+AGG | 0.537959 | 3.3:+32390718 | None:intergenic |
| AGATACATAGGAGTGGGAGA+AGG | 0.538860 | 3.3:-32391725 | MS.gene89405:CDS |
| TTAAATTGAATCCATATGGT+TGG | 0.543123 | 3.3:-32390707 | MS.gene89405:CDS |
| GCTGAAAGTGCAGAGCATCC+TGG | 0.544526 | 3.3:+32391617 | None:intergenic |
| ATAAATTAGAGCTTGGATGT+TGG | 0.545384 | 3.3:+32388948 | None:intergenic |
| CACATGATAAATGGCGTGCA+TGG | 0.547129 | 3.3:-32388532 | MS.gene89405:CDS |
| TATACCAAAAGAACTCTATG+AGG | 0.551652 | 3.3:-32389753 | MS.gene89405:intron |
| TGGCGTGCATGGTTTGTTGA+AGG | 0.557717 | 3.3:-32388521 | MS.gene89405:CDS |
| GCGATAATATCCTACAGCAC+TGG | 0.561436 | 3.3:+32388984 | None:intergenic |
| AAACGATGAAAATGTGCGCA+AGG | 0.564951 | 3.3:-32389184 | MS.gene89405:CDS |
| TCTTACTCAGAAACACAAGA+AGG | 0.568210 | 3.3:-32390633 | MS.gene89405:CDS |
| TCATATTCAGGATTTACTAC+CGG | 0.568587 | 3.3:-32390416 | MS.gene89405:CDS |
| TTGTGTAGATACATAGGAGT+GGG | 0.572101 | 3.3:-32391731 | MS.gene89405:intron |
| CTTAACATATGTGGCCGTGA+AGG | 0.589403 | 3.3:-32387863 | None:intergenic |
| TTATACAGGGCCATTAACAA+TGG | 0.592269 | 3.3:-32390760 | MS.gene89405:intron |
| TGTGTATTGTGTAGATACAT+AGG | 0.592376 | 3.3:-32391737 | MS.gene89405:intron |
| CAAGATTGTGTACTCAGTTG+TGG | 0.595973 | 3.3:+32388578 | None:intergenic |
| AGACCACTACTTAACATATG+TGG | 0.597401 | 3.3:-32387872 | MS.gene89405:CDS |
| CAAACACAAACCAGTGCTGT+AGG | 0.598565 | 3.3:-32388994 | MS.gene89405:CDS |
| GGTTGTGTAGTGTGATGGGT+TGG | 0.602148 | 3.3:-32394221 | None:intergenic |
| AGATTATGAAGCTTATTCTG+AGG | 0.610998 | 3.3:-32389525 | MS.gene89405:intron |
| GGAAGTTCCCCATCAAAACC+AGG | 0.614528 | 3.3:+32394120 | None:intergenic |
| CGGCCACATATGTTAAGTAG+TGG | 0.620401 | 3.3:+32387869 | None:intergenic |
| TAGAGCTTGGATGTTGGCGT+TGG | 0.621136 | 3.3:+32388954 | None:intergenic |
| TAGCAGTGACACACTGTGGG+TGG | 0.627959 | 3.3:-32390604 | MS.gene89405:CDS |
| ATTGTGTAGATACATAGGAG+TGG | 0.639457 | 3.3:-32391732 | MS.gene89405:intron |
| GCTTATACAGGTCAACAGCA+GGG | 0.641149 | 3.3:+32389816 | None:intergenic |
| ATAGATATACCAGTAGGGAC+TGG | 0.642117 | 3.3:-32390660 | MS.gene89405:CDS |
| TGTACATAGATATACCAGTA+GGG | 0.651617 | 3.3:-32390665 | MS.gene89405:CDS |
| CTATAGCAGTGACACACTGT+GGG | 0.654695 | 3.3:-32390607 | MS.gene89405:CDS |
| TTCCATTCAAGCTTGAAACA+GGG | 0.655856 | 3.3:-32394101 | MS.gene89405:intron |
| ATGTACATAGATATACCAGT+AGG | 0.657583 | 3.3:-32390666 | MS.gene89405:CDS |
| ATTTAAATAGGGAACTAAAG+GGG | 0.669063 | 3.3:-32389052 | MS.gene89405:intron |
| ACTATAGCAGTGACACACTG+TGG | 0.674845 | 3.3:-32390608 | MS.gene89405:CDS |
| TCATTGGAGGAAAATTGTAA+GGG | 0.680464 | 3.3:-32389590 | MS.gene89405:CDS |
| CAAGGCTCTTCATGTCAGAG+AGG | 0.710069 | 3.3:-32389166 | MS.gene89405:intron |
| ACAATGGATGACGATTACAG+TGG | 0.739292 | 3.3:-32390744 | MS.gene89405:CDS |
| GCAGGTGTAGTGATACAGAG+AGG | 0.739848 | 3.3:+32389387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr3.3:32389627-32389608 | None:intergenic | 0.0% |
| !!! | AATTATTTTTTAATTTTTTT+TGG | - | chr3.3:32394072-32394091 | MS.gene89405:intron | 0.0% |
| !! | AACATAGAAAAATATAAAAA+CGG | + | chr3.3:32390515-32390534 | None:intergenic | 10.0% |
| !! | TAAGATAATTAGTTATATAT+AGG | + | chr3.3:32392209-32392228 | None:intergenic | 10.0% |
| !! | TAATTACAAGTTTATAATTA+GGG | + | chr3.3:32393943-32393962 | None:intergenic | 10.0% |
| !! | TATGAATTTCAATAAAAAAA+AGG | - | chr3.3:32394041-32394060 | MS.gene89405:intron | 10.0% |
| !! | TTAATTACAAGTTTATAATT+AGG | + | chr3.3:32393944-32393963 | None:intergenic | 10.0% |
| !!! | AAGAAAAGTATATAAATAAA+GGG | - | chr3.3:32389184-32389203 | MS.gene89405:CDS | 10.0% |
| !!! | TAAGAAAAGTATATAAATAA+AGG | - | chr3.3:32389183-32389202 | MS.gene89405:CDS | 10.0% |
| !!! | TTAATTTGATGATTTAAATT+TGG | - | chr3.3:32392042-32392061 | MS.gene89405:intron | 10.0% |
| !!! | TTATTCTTACATAAATTTTA+AGG | + | chr3.3:32389953-32389972 | None:intergenic | 10.0% |
| !!! | TTTATGTAAGAATAATTTTA+AGG | - | chr3.3:32389958-32389977 | MS.gene89405:CDS | 10.0% |
| !! | AAATTAAAAACAAAATTACC+CGG | + | chr3.3:32393588-32393607 | None:intergenic | 15.0% |
| !! | AATAAACAAAATAAGGATAA+GGG | - | chr3.3:32388227-32388246 | MS.gene89405:intron | 15.0% |
| !! | AATGATTATAAGATTCATAA+TGG | + | chr3.3:32392356-32392375 | None:intergenic | 15.0% |
| !! | AGTAGATACAAAATATTTAA+AGG | + | chr3.3:32389026-32389045 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr3.3:32389249-32389268 | MS.gene89405:intron | 15.0% |
| !! | TAACATTATCAAAGAAAAAA+AGG | + | chr3.3:32393413-32393432 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr3.3:32389248-32389267 | MS.gene89405:intron | 15.0% |
| !! | TCAATAATCCAATTTAAATA+GGG | - | chr3.3:32393012-32393031 | MS.gene89405:intron | 15.0% |
| !! | TGAAAAGAATAAACAAAATA+AGG | - | chr3.3:32388220-32388239 | MS.gene89405:intron | 15.0% |
| !! | TTCAATAATCCAATTTAAAT+AGG | - | chr3.3:32393011-32393030 | MS.gene89405:intron | 15.0% |
| !! | TTGAAAAATTGCAATTAATT+TGG | + | chr3.3:32388692-32388711 | None:intergenic | 15.0% |
| !!! | AAAAGTGAATAACATTTTAT+TGG | + | chr3.3:32389512-32389531 | None:intergenic | 15.0% |
| !!! | AGAAAAGTATATAAATAAAG+GGG | - | chr3.3:32389185-32389204 | MS.gene89405:CDS | 15.0% |
| !!! | ATAAACCATTTATTTTACAT+AGG | + | chr3.3:32388512-32388531 | None:intergenic | 15.0% |
| !!! | GACATTTTTTTTTAGAAAAT+GGG | - | chr3.3:32389318-32389337 | MS.gene89405:intron | 15.0% |
| !!! | TACATATTCTTTTTTACAAA+AGG | - | chr3.3:32391498-32391517 | MS.gene89405:intron | 15.0% |
| !!! | TATAATAAAGTTTTACGTAA+TGG | + | chr3.3:32389108-32389127 | None:intergenic | 15.0% |
| !! | AAACTATCCAAATGTATATT+TGG | - | chr3.3:32390551-32390570 | MS.gene89405:intron | 20.0% |
| !! | AACAAAAATTGTTATAGTCA+AGG | + | chr3.3:32391089-32391108 | None:intergenic | 20.0% |
| !! | AAGTAAAATTGGATCAATAA+AGG | + | chr3.3:32390423-32390442 | None:intergenic | 20.0% |
| !! | AATTTAAATAGGGAACTAAA+GGG | - | chr3.3:32393022-32393041 | MS.gene89405:intron | 20.0% |
| !! | AGAAAAATATAAAAACGGAT+GGG | + | chr3.3:32390510-32390529 | None:intergenic | 20.0% |
| !! | AGAAATTAAAGAATACAAGT+TGG | + | chr3.3:32388777-32388796 | None:intergenic | 20.0% |
| !! | AGTAAAATTGGATCAATAAA+GGG | + | chr3.3:32390422-32390441 | None:intergenic | 20.0% |
| !! | ATACAAAATATTTAAAGGAG+TGG | + | chr3.3:32389021-32389040 | None:intergenic | 20.0% |
| !! | ATATACATTTGGATAGTTTA+AGG | + | chr3.3:32390550-32390569 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTGTGTTACAT+GGG | + | chr3.3:32388466-32388485 | None:intergenic | 20.0% |
| !! | GAATAAACAAAATAAGGATA+AGG | - | chr3.3:32388226-32388245 | MS.gene89405:intron | 20.0% |
| !! | GTAATCTTATTCAAAATTTG+TGG | + | chr3.3:32388428-32388447 | None:intergenic | 20.0% |
| !! | TAAGCGATACTTTAATAAAT+AGG | + | chr3.3:32389576-32389595 | None:intergenic | 20.0% |
| !! | TACAAAATATTTAAAGGAGT+GGG | + | chr3.3:32389020-32389039 | None:intergenic | 20.0% |
| !! | TAGAAAAATATAAAAACGGA+TGG | + | chr3.3:32390511-32390530 | None:intergenic | 20.0% |
| !! | TATTCAAAATTTGTGTTACA+TGG | + | chr3.3:32388467-32388486 | None:intergenic | 20.0% |
| !! | TGAAACCTATGTAAAATAAA+TGG | - | chr3.3:32388504-32388523 | MS.gene89405:intron | 20.0% |
| !! | TTAATTTCTCTCTTTATGAA+TGG | - | chr3.3:32388788-32388807 | MS.gene89405:intron | 20.0% |
| !! | TTAGAGTTATTATCATATTC+TGG | - | chr3.3:32392855-32392874 | MS.gene89405:intron | 20.0% |
| !! | TTGAATAAGATTACTTTCAT+TGG | - | chr3.3:32388480-32388499 | MS.gene89405:intron | 20.0% |
| !! | TTTATGATTTATCAATGCAA+AGG | - | chr3.3:32391545-32391564 | MS.gene89405:intron | 20.0% |
| !!! | ATCAAATTAACATTTGTTAC+TGG | + | chr3.3:32392032-32392051 | None:intergenic | 20.0% |
| !!! | ATCCTTTTATTAGATACAAA+GGG | + | chr3.3:32388128-32388147 | None:intergenic | 20.0% |
| !!! | ATGATAATAACTCTAAAAGA+CGG | + | chr3.3:32392851-32392870 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGGCTCTTTTAT+TGG | - | chr3.3:32394084-32394103 | MS.gene89405:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr3.3:32389317-32389336 | MS.gene89405:intron | 20.0% |
| !!! | GTACCATTTTATTAATTACA+TGG | - | chr3.3:32394131-32394150 | MS.gene89405:CDS | 20.0% |
| !!! | TCATACTTTACTTATTTTTC+CGG | - | chr3.3:32391108-32391127 | MS.gene89405:intron | 20.0% |
| !!! | TGAAATAAGTCAGTTATTTT+GGG | - | chr3.3:32389296-32389315 | MS.gene89405:intron | 20.0% |
| !!! | TTATTGATCCAATTTTACTT+TGG | - | chr3.3:32390423-32390442 | MS.gene89405:CDS | 20.0% |
| !!! | TTGAAATAAGTCAGTTATTT+TGG | - | chr3.3:32389295-32389314 | MS.gene89405:intron | 20.0% |
| ! | AAACATATACTAGTCAATAC+AGG | + | chr3.3:32391810-32391829 | None:intergenic | 25.0% |
| ! | AAAGTAAAAAAACGTGTGTT+TGG | - | chr3.3:32391844-32391863 | MS.gene89405:intron | 25.0% |
| ! | AAATATAATGTTGCAGTCAT+TGG | - | chr3.3:32392469-32392488 | MS.gene89405:intron | 25.0% |
| ! | AAATTGTTATAGTCAAGGTA+AGG | + | chr3.3:32391084-32391103 | None:intergenic | 25.0% |
| ! | AAGCTTAAATTGAATCCATA+TGG | - | chr3.3:32391364-32391383 | MS.gene89405:intron | 25.0% |
| ! | AATAAAAGGATGCTTAGATA+TGG | - | chr3.3:32388137-32388156 | MS.gene89405:intron | 25.0% |
| ! | AATTCTTGAAAAATGTTCCA+CGG | - | chr3.3:32390220-32390239 | MS.gene89405:intron | 25.0% |
| ! | AATTGTTATAGTCAAGGTAA+GGG | + | chr3.3:32391083-32391102 | None:intergenic | 25.0% |
| ! | ACAAAATATTTAAAGGAGTG+GGG | + | chr3.3:32389019-32389038 | None:intergenic | 25.0% |
| ! | ACTAAGATTATACAAGGTTA+AGG | - | chr3.3:32390619-32390638 | MS.gene89405:CDS | 25.0% |
| ! | ATAAAAGGATGCTTAGATAT+GGG | - | chr3.3:32388138-32388157 | MS.gene89405:intron | 25.0% |
| ! | ATCAATAAAGGGATTTCTTT+GGG | + | chr3.3:32390411-32390430 | None:intergenic | 25.0% |
| ! | ATCCAATATGCATAAATTTG+TGG | - | chr3.3:32390775-32390794 | MS.gene89405:intron | 25.0% |
| ! | ATTATCTTATTCTTATCGTC+AGG | - | chr3.3:32392220-32392239 | MS.gene89405:intron | 25.0% |
| ! | ATTATGTCACACTCATTATT+TGG | - | chr3.3:32393438-32393457 | MS.gene89405:intron | 25.0% |
| ! | ATTTAAATAGGGAACTAAAG+GGG | - | chr3.3:32393023-32393042 | MS.gene89405:intron | 25.0% |
| ! | CAATTTAAATAGGGAACTAA+AGG | - | chr3.3:32393021-32393040 | MS.gene89405:intron | 25.0% |
| ! | CCTGAAAAACATTCTAATTT+GGG | - | chr3.3:32390048-32390067 | MS.gene89405:intron | 25.0% |
| ! | CGTTGAAACACATAAAAAAA+AGG | + | chr3.3:32388958-32388977 | None:intergenic | 25.0% |
| ! | CTAAGATTATACAAGGTTAA+GGG | - | chr3.3:32390620-32390639 | MS.gene89405:CDS | 25.0% |
| ! | CTGAAAAACATTCTAATTTG+GGG | - | chr3.3:32390049-32390068 | MS.gene89405:intron | 25.0% |
| ! | CTTACTTTGATGTTTATATG+TGG | + | chr3.3:32392132-32392151 | None:intergenic | 25.0% |
| ! | GGACCATGTAATTAATAAAA+TGG | + | chr3.3:32394137-32394156 | None:intergenic | 25.0% |
| ! | TAATCAAGTTAGCACAATTT+GGG | + | chr3.3:32392818-32392837 | None:intergenic | 25.0% |
| ! | TAATTTCTCATGTTAGGTAT+GGG | + | chr3.3:32388348-32388367 | None:intergenic | 25.0% |
| ! | TACCCTTTGTATCTAATAAA+AGG | - | chr3.3:32388123-32388142 | MS.gene89405:intron | 25.0% |
| ! | TAGATCTAATTTCTCATGTT+AGG | + | chr3.3:32388354-32388373 | None:intergenic | 25.0% |
| ! | TATACTCAAACTACAACAAT+TGG | + | chr3.3:32393629-32393648 | None:intergenic | 25.0% |
| ! | TATGAGTAATGCTTAATATC+AGG | - | chr3.3:32388712-32388731 | MS.gene89405:intron | 25.0% |
| ! | TATGGATTCAATTTAAGCTT+TGG | + | chr3.3:32391364-32391383 | None:intergenic | 25.0% |
| ! | TCACATATACTAATGTTAGT+TGG | - | chr3.3:32391007-32391026 | MS.gene89405:intron | 25.0% |
| ! | TGAAAAACATTCTAATTTGG+GGG | - | chr3.3:32390050-32390069 | MS.gene89405:intron | 25.0% |
| ! | TGAAACACAAATTATTAGTG+TGG | - | chr3.3:32390314-32390333 | MS.gene89405:intron | 25.0% |
| ! | TGATAGTTGAATCAACAAAT+TGG | + | chr3.3:32390712-32390731 | None:intergenic | 25.0% |
| ! | TTAAATTGAATCCATATGGT+TGG | - | chr3.3:32391368-32391387 | MS.gene89405:intron | 25.0% |
| ! | TTAATCAAGTTAGCACAATT+TGG | + | chr3.3:32392819-32392838 | None:intergenic | 25.0% |
| ! | TTACTGGAAACTTAATTAGT+AGG | + | chr3.3:32392016-32392035 | None:intergenic | 25.0% |
| ! | TTATCTTATTCTTATCGTCA+GGG | - | chr3.3:32392221-32392240 | MS.gene89405:intron | 25.0% |
| ! | TTATGCATATTGGATACAAA+TGG | + | chr3.3:32390770-32390789 | None:intergenic | 25.0% |
| ! | TTATGTCACACTCATTATTT+GGG | - | chr3.3:32393439-32393458 | MS.gene89405:intron | 25.0% |
| ! | TTGAAATTATCATGAAGCTA+AGG | - | chr3.3:32392982-32393001 | MS.gene89405:intron | 25.0% |
| ! | TTGAATAAGATTACTTTCGT+TGG | - | chr3.3:32388434-32388453 | MS.gene89405:intron | 25.0% |
| ! | TTTAGTTAAACATATGTGTG+TGG | - | chr3.3:32389822-32389841 | MS.gene89405:CDS | 25.0% |
| !! | AATAAAGTTTTACGTAATGG+TGG | + | chr3.3:32389105-32389124 | None:intergenic | 25.0% |
| !! | CATCCTTTTATTAGATACAA+AGG | + | chr3.3:32388129-32388148 | None:intergenic | 25.0% |
| !! | CCAAATTAGAATGTTTTTCA+GGG | + | chr3.3:32390050-32390069 | None:intergenic | 25.0% |
| !! | CTTTAGTTCCCTATTTAAAT+TGG | + | chr3.3:32393023-32393042 | None:intergenic | 25.0% |
| !! | CTTTTGGTATAAGATTCATA+TGG | + | chr3.3:32392313-32392332 | None:intergenic | 25.0% |
| !! | GCAAATGTTTTACTATTTTG+TGG | - | chr3.3:32390382-32390401 | MS.gene89405:intron | 25.0% |
| !! | GTTGTTCAAAAAGTATATGA+AGG | - | chr3.3:32391686-32391705 | MS.gene89405:CDS | 25.0% |
| !! | TCATTTTCTCAACAATTAAG+CGG | + | chr3.3:32390669-32390688 | None:intergenic | 25.0% |
| !! | TTCAAGATGATCAAGAATTT+TGG | - | chr3.3:32392737-32392756 | MS.gene89405:intron | 25.0% |
| !! | TTTTATTGGATTTGGATGAA+AGG | - | chr3.3:32394098-32394117 | MS.gene89405:intron | 25.0% |
| !!! | AAATAAGGATAAGGGTATTT+AGG | - | chr3.3:32388235-32388254 | MS.gene89405:intron | 25.0% |
| !!! | AATAAGGATAAGGGTATTTA+GGG | - | chr3.3:32388236-32388255 | MS.gene89405:intron | 25.0% |
| !!! | AATTTACTTTGTACTGGTTT+AGG | - | chr3.3:32391196-32391215 | MS.gene89405:intron | 25.0% |
| !!! | ATTTTAATATGCTATAGTCG+AGG | + | chr3.3:32393866-32393885 | None:intergenic | 25.0% |
| !!! | TCAGCATTCTTTTTTGAAAA+TGG | - | chr3.3:32390476-32390495 | MS.gene89405:intron | 25.0% |
| !!! | TCATATACTTTTTGAACAAC+AGG | + | chr3.3:32391686-32391705 | None:intergenic | 25.0% |
| AAAACATTGATGTGTCAAGT+AGG | - | chr3.3:32393794-32393813 | MS.gene89405:intron | 30.0% | |
| AAACATTGATGTGTCAAGTA+GGG | - | chr3.3:32393795-32393814 | MS.gene89405:intron | 30.0% | |
| AAGAAATTCTGTCACATCAA+AGG | + | chr3.3:32390591-32390610 | None:intergenic | 30.0% | |
| AATTCTTGATCATCTTGAAC+AGG | + | chr3.3:32392736-32392755 | None:intergenic | 30.0% | |
| AATTTCTCATGTTAGGTATG+GGG | + | chr3.3:32388347-32388366 | None:intergenic | 30.0% | |
| ACACATAAAAAAAAGGACCA+CGG | + | chr3.3:32388951-32388970 | None:intergenic | 30.0% | |
| AGAAGGACTAAGATTATACA+AGG | - | chr3.3:32390613-32390632 | MS.gene89405:CDS | 30.0% | |
| AGATTATGAAGCTTATTCTG+AGG | - | chr3.3:32392550-32392569 | MS.gene89405:intron | 30.0% | |
| AGCATTCATAGTAATGCATT+TGG | - | chr3.3:32392589-32392608 | MS.gene89405:intron | 30.0% | |
| ATAAATTAGAGCTTGGATGT+TGG | + | chr3.3:32393130-32393149 | None:intergenic | 30.0% | |
| ATATTCTACTTTCAATGCAG+TGG | - | chr3.3:32391585-32391604 | MS.gene89405:intron | 30.0% | |
| ATCTGGGTGACATATTATAA+AGG | + | chr3.3:32394158-32394177 | None:intergenic | 30.0% | |
| ATGAATTGCGTTGTTTATAC+AGG | - | chr3.3:32391301-32391320 | MS.gene89405:intron | 30.0% | |
| ATGTACATAGATATACCAGT+AGG | - | chr3.3:32391409-32391428 | MS.gene89405:intron | 30.0% | |
| CAATATGCATAAATTTGTGG+AGG | - | chr3.3:32390778-32390797 | MS.gene89405:intron | 30.0% | |
| CACAAGAATTTACTTTGTAC+TGG | - | chr3.3:32391190-32391209 | MS.gene89405:intron | 30.0% | |
| CAGTACAAAGTAAATTCTTG+TGG | + | chr3.3:32391192-32391211 | None:intergenic | 30.0% | |
| CCCTGAAAAACATTCTAATT+TGG | - | chr3.3:32390047-32390066 | MS.gene89405:intron | 30.0% | |
| CTAATTTCTCATGTTAGGTA+TGG | + | chr3.3:32388349-32388368 | None:intergenic | 30.0% | |
| CTCCACAAATTTATGCATAT+TGG | + | chr3.3:32390780-32390799 | None:intergenic | 30.0% | |
| CTGTGAAGAAGGAAAAAAAT+TGG | - | chr3.3:32388305-32388324 | MS.gene89405:intron | 30.0% | |
| GAAGAAGGAAAAAAATTGGT+GGG | - | chr3.3:32388309-32388328 | MS.gene89405:intron | 30.0% | |
| GAATGAGCCAAATATACATT+TGG | + | chr3.3:32390561-32390580 | None:intergenic | 30.0% | |
| GATCAATAAAGGGATTTCTT+TGG | + | chr3.3:32390412-32390431 | None:intergenic | 30.0% | |
| GATCCACATTATGTTAAATG+GGG | - | chr3.3:32388986-32389005 | MS.gene89405:CDS | 30.0% | |
| GCATTCATAGTAATGCATTT+GGG | - | chr3.3:32392590-32392609 | MS.gene89405:intron | 30.0% | |
| GGATCCACATTATGTTAAAT+GGG | - | chr3.3:32388985-32389004 | MS.gene89405:CDS | 30.0% | |
| TAAAAGGATGCTTAGATATG+GGG | - | chr3.3:32388139-32388158 | MS.gene89405:intron | 30.0% | |
| TAATCGTCATCCATTGTTAA+TGG | + | chr3.3:32391328-32391347 | None:intergenic | 30.0% | |
| TATACCAAAAGAACTCTATG+AGG | - | chr3.3:32392322-32392341 | MS.gene89405:intron | 30.0% | |
| TATGAAGGTAAACACTAACT+AGG | - | chr3.3:32391701-32391720 | MS.gene89405:CDS | 30.0% | |
| TCACGTTTATATGCTTATAC+AGG | + | chr3.3:32392274-32392293 | None:intergenic | 30.0% | |
| TCATATTCAGGATTTACTAC+CGG | - | chr3.3:32391659-32391678 | MS.gene89405:CDS | 30.0% | |
| TCATTGGAGGAAAATTGTAA+GGG | - | chr3.3:32392485-32392504 | MS.gene89405:intron | 30.0% | |
| TCTAACAAAACCAACTTGTA+AGG | - | chr3.3:32393906-32393925 | MS.gene89405:intron | 30.0% | |
| TGAAGAAGGAAAAAAATTGG+TGG | - | chr3.3:32388308-32388327 | MS.gene89405:intron | 30.0% | |
| TGAATTGCGTTGTTTATACA+GGG | - | chr3.3:32391302-32391321 | MS.gene89405:intron | 30.0% | |
| TGATTCAACTATCATACACT+AGG | - | chr3.3:32390718-32390737 | MS.gene89405:CDS | 30.0% | |
| TGTACATAGATATACCAGTA+GGG | - | chr3.3:32391410-32391429 | MS.gene89405:intron | 30.0% | |
| TGTGTATTGTGTAGATACAT+AGG | - | chr3.3:32390338-32390357 | MS.gene89405:intron | 30.0% | |
| TTCTCTCTTTATGAATGGTT+TGG | - | chr3.3:32388793-32388812 | MS.gene89405:intron | 30.0% | |
| TTGTAGATTTCTGTGAATCT+GGG | + | chr3.3:32394174-32394193 | None:intergenic | 30.0% | |
| ! | AACATCCAAGCTCTAATTTA+TGG | - | chr3.3:32393129-32393148 | MS.gene89405:intron | 30.0% |
| ! | AATGGATTTGAGCTAAACTT+TGG | + | chr3.3:32391623-32391642 | None:intergenic | 30.0% |
| ! | ACATCCAAGCTCTAATTTAT+GGG | - | chr3.3:32393130-32393149 | MS.gene89405:intron | 30.0% |
| ! | AGCTCAAATCCATTTTACAT+AGG | - | chr3.3:32391629-32391648 | MS.gene89405:CDS | 30.0% |
| ! | CCCAAATTAGAATGTTTTTC+AGG | + | chr3.3:32390051-32390070 | None:intergenic | 30.0% |
| ! | GATTTTATGTTGTGGGATTT+TGG | + | chr3.3:32390895-32390914 | None:intergenic | 30.0% |
| ! | TAATTTGCATCTAGCTATGA+AGG | - | chr3.3:32392412-32392431 | MS.gene89405:intron | 30.0% |
| ! | TCAAATCCATTTTACATAGG+TGG | - | chr3.3:32391632-32391651 | MS.gene89405:CDS | 30.0% |
| !! | ACAAAGGGTACTTACATATA+TGG | + | chr3.3:32388113-32388132 | None:intergenic | 30.0% |
| !! | ATAAGGATAAGGGTATTTAG+GGG | - | chr3.3:32388237-32388256 | MS.gene89405:intron | 30.0% |
| !! | GATTCAATTTAAGCTTTGGA+AGG | + | chr3.3:32391360-32391379 | None:intergenic | 30.0% |
| !! | GGACTTCTAAAATCTTGTTT+CGG | + | chr3.3:32391758-32391777 | None:intergenic | 30.0% |
| !! | GTTTGGTTTGACTGAAATAT+AGG | + | chr3.3:32388391-32388410 | None:intergenic | 30.0% |
| !!! | AAACATTTTTGGTTCACAAG+AGG | - | chr3.3:32389892-32389911 | MS.gene89405:intron | 30.0% |
| !!! | AATGTTTTTCAGGGACATAT+TGG | + | chr3.3:32390041-32390060 | None:intergenic | 30.0% |
| !!! | GACACAAACGCATTTTAATT+TGG | - | chr3.3:32393377-32393396 | MS.gene89405:intron | 30.0% |
| !!! | TGGTTTTGTTAGATTGAGTT+AGG | + | chr3.3:32393899-32393918 | None:intergenic | 30.0% |
| !!! | TTTGGCTCTTTTATTGGATT+TGG | - | chr3.3:32394090-32394109 | MS.gene89405:intron | 30.0% |
| !!! | TTTTTAAGACTTGGTTCTCA+AGG | + | chr3.3:32391162-32391181 | None:intergenic | 30.0% |
| AAAAATGTTCCACGGTTAAC+GGG | - | chr3.3:32390228-32390247 | MS.gene89405:intron | 35.0% | |
| AACATATGTGTCCAACCATA+TGG | + | chr3.3:32391382-32391401 | None:intergenic | 35.0% | |
| AACATTGATGTGTCAAGTAG+GGG | - | chr3.3:32393796-32393815 | MS.gene89405:intron | 35.0% | |
| AATGGAAACAACTCTAGTCA+TGG | + | chr3.3:32391051-32391070 | None:intergenic | 35.0% | |
| ACAGAAATCATGCCTTAGTT+AGG | + | chr3.3:32390157-32390176 | None:intergenic | 35.0% | |
| ACATGAGCACACATGATAAA+TGG | - | chr3.3:32393534-32393553 | MS.gene89405:intron | 35.0% | |
| ACTAGGCGAAAATGCAATAT+CGG | - | chr3.3:32391718-32391737 | MS.gene89405:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr3.3:32389331-32389350 | MS.gene89405:intron | 35.0% | |
| AGACCACTACTTAACATATG+TGG | - | chr3.3:32394203-32394222 | MS.gene89405:CDS | 35.0% | |
| AGTCCTGAAAGTTGTGAAAT+TGG | - | chr3.3:32391773-32391792 | MS.gene89405:intron | 35.0% | |
| ATATGTGTGTGGTTCAAGAA+AGG | - | chr3.3:32389833-32389852 | MS.gene89405:CDS | 35.0% | |
| ATCATATTCTGGTCGACATA+TGG | - | chr3.3:32392866-32392885 | MS.gene89405:intron | 35.0% | |
| ATCGAACTAGCTGCAAAAAA+AGG | + | chr3.3:32392642-32392661 | None:intergenic | 35.0% | |
| ATGATTAGAGTTGCAAGTTC+TGG | + | chr3.3:32390835-32390854 | None:intergenic | 35.0% | |
| ATTGTGTAGATACATAGGAG+TGG | - | chr3.3:32390343-32390362 | MS.gene89405:intron | 35.0% | |
| ATTTATTACTACCTCCGTCT+CGG | - | chr3.3:32389127-32389146 | MS.gene89405:intron | 35.0% | |
| CAAATCTTCACCTTACAAGT+TGG | + | chr3.3:32393919-32393938 | None:intergenic | 35.0% | |
| CAATCATTGCTGTATTGTTG+TGG | - | chr3.3:32388187-32388206 | MS.gene89405:intron | 35.0% | |
| CCAACGAACCAAAGTAAAAT+TGG | + | chr3.3:32390434-32390453 | None:intergenic | 35.0% | |
| CGGATCCACATTATGTTAAA+TGG | - | chr3.3:32388984-32389003 | MS.gene89405:CDS | 35.0% | |
| CTAGTATATGTTTGCTCTAG+TGG | - | chr3.3:32391817-32391836 | MS.gene89405:intron | 35.0% | |
| CTTGTAGATTTCTGTGAATC+TGG | + | chr3.3:32394175-32394194 | None:intergenic | 35.0% | |
| GAAAAATGTTCCACGGTTAA+CGG | - | chr3.3:32390227-32390246 | MS.gene89405:intron | 35.0% | |
| GACTGAAATATAGGAGAAGT+TGG | + | chr3.3:32388382-32388401 | None:intergenic | 35.0% | |
| GTCATTGGAGGAAAATTGTA+AGG | - | chr3.3:32392484-32392503 | MS.gene89405:intron | 35.0% | |
| GTCCTGAAAGTTGTGAAATT+GGG | - | chr3.3:32391774-32391793 | MS.gene89405:intron | 35.0% | |
| GTTACCCATAAATTAGAGCT+TGG | + | chr3.3:32393137-32393156 | None:intergenic | 35.0% | |
| TACTTACATATATGGACGGA+AGG | + | chr3.3:32388105-32388124 | None:intergenic | 35.0% | |
| TATAATGTTGCAGTCATTGG+AGG | - | chr3.3:32392472-32392491 | MS.gene89405:intron | 35.0% | |
| TCATATTCTGGTCGACATAT+GGG | - | chr3.3:32392867-32392886 | MS.gene89405:intron | 35.0% | |
| TCGGTTTAATTGACCTACTT+TGG | - | chr3.3:32389146-32389165 | MS.gene89405:intron | 35.0% | |
| TCTATTGTCAAGAAACTTCC+TGG | - | chr3.3:32387937-32387956 | MS.gene89405:intron | 35.0% | |
| TCTGCCATTCATGGTTTATT+CGG | - | chr3.3:32387912-32387931 | MS.gene89405:intron | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr3.3:32389162-32389181 | None:intergenic | 35.0% | |
| TCTTACTCAGAAACACAAGA+AGG | - | chr3.3:32391442-32391461 | MS.gene89405:intron | 35.0% | |
| TGAATTCTTGCTTGAATTGC+AGG | - | chr3.3:32392087-32392106 | MS.gene89405:intron | 35.0% | |
| TGGAACACTAACACTATGTT+TGG | + | chr3.3:32388408-32388427 | None:intergenic | 35.0% | |
| TTATACAGGGCCATTAACAA+TGG | - | chr3.3:32391315-32391334 | MS.gene89405:intron | 35.0% | |
| TTCCATTCAAGCTTGAAACA+GGG | - | chr3.3:32387974-32387993 | MS.gene89405:intron | 35.0% | |
| TTGAAGCAGCAGTGATATAT+AGG | + | chr3.3:32393189-32393208 | None:intergenic | 35.0% | |
| TTGCTCAAGTTAAAGGACAA+TGG | + | chr3.3:32393979-32393998 | None:intergenic | 35.0% | |
| TTGTGTAGATACATAGGAGT+GGG | - | chr3.3:32390344-32390363 | MS.gene89405:intron | 35.0% | |
| TTTAATGCTTCTGCCATTCA+TGG | - | chr3.3:32387903-32387922 | MS.gene89405:intron | 35.0% | |
| ! | AATCCATTTTACATAGGTGG+TGG | - | chr3.3:32391635-32391654 | MS.gene89405:CDS | 35.0% |
| ! | AGCTGTGAGATTTTATGTTG+TGG | + | chr3.3:32390903-32390922 | None:intergenic | 35.0% |
| ! | AGGGTACTTACATATATGGA+CGG | + | chr3.3:32388109-32388128 | None:intergenic | 35.0% |
| ! | AGGTAAGGGTATATGTCAAA+TGG | + | chr3.3:32391069-32391088 | None:intergenic | 35.0% |
| ! | ATCCAGAAATCGTAACTTGT+GGG | + | chr3.3:32389757-32389776 | None:intergenic | 35.0% |
| ! | CAGTGATATATAGGTTTGCT+TGG | + | chr3.3:32393180-32393199 | None:intergenic | 35.0% |
| ! | GAGACACACTTTGTGTTATT+TGG | + | chr3.3:32392530-32392549 | None:intergenic | 35.0% |
| ! | GCTGTGAGATTTTATGTTGT+GGG | + | chr3.3:32390902-32390921 | None:intergenic | 35.0% |
| ! | GTAACCTCATAGAGTTCTTT+TGG | + | chr3.3:32392329-32392348 | None:intergenic | 35.0% |
| ! | GTGACAGAATTTCTTTGAGA+AGG | - | chr3.3:32390596-32390615 | MS.gene89405:CDS | 35.0% |
| !! | ATGGAGGGAGTATTATATCA+TGG | - | chr3.3:32388162-32388181 | MS.gene89405:intron | 35.0% |
| !! | ATTTTACTTTGGTTCGTTGG+AGG | - | chr3.3:32390434-32390453 | MS.gene89405:CDS | 35.0% |
| !! | CCAATTTTACTTTGGTTCGT+TGG | - | chr3.3:32390431-32390450 | MS.gene89405:CDS | 35.0% |
| !! | GGCATGAGGAAATTTTAAGT+TGG | + | chr3.3:32390814-32390833 | None:intergenic | 35.0% |
| !! | GTTTTTGAAAAGCTAGCAGT+TGG | + | chr3.3:32391879-32391898 | None:intergenic | 35.0% |
| !! | TACTTTTTGAACAACAGGAC+CGG | + | chr3.3:32391681-32391700 | None:intergenic | 35.0% |
| !!! | AAGAAACTTCCTGGTTTTGA+TGG | - | chr3.3:32387946-32387965 | MS.gene89405:intron | 35.0% |
| !!! | AGAAACTTCCTGGTTTTGAT+GGG | - | chr3.3:32387947-32387966 | MS.gene89405:intron | 35.0% |
| !!! | ATTTTTGGTTCACAAGAGGA+GGG | - | chr3.3:32389896-32389915 | MS.gene89405:intron | 35.0% |
| !!! | GGAGTGAGTTTTTTAAGACT+TGG | + | chr3.3:32391171-32391190 | None:intergenic | 35.0% |
| !!! | GTTTTAGTTTCGTGTTCTAC+AGG | + | chr3.3:32393277-32393296 | None:intergenic | 35.0% |
| !!! | TGCTAGCTTTTCAAAAACCA+CGG | - | chr3.3:32391881-32391900 | MS.gene89405:intron | 35.0% |
| !!! | TTAGACTTTTAGAGCGTGTT+TGG | + | chr3.3:32391950-32391969 | None:intergenic | 35.0% |
| AAAATGTTCCACGGTTAACG+GGG | - | chr3.3:32390229-32390248 | MS.gene89405:intron | 40.0% | |
| AAACGATGAAAATGTGCGCA+AGG | - | chr3.3:32392891-32392910 | MS.gene89405:intron | 40.0% | |
| ACAATGGATGACGATTACAG+TGG | - | chr3.3:32391331-32391350 | MS.gene89405:intron | 40.0% | |
| AGATGCAGCTGTATTGTGTT+AGG | - | chr3.3:32387877-32387896 | MS.gene89405:CDS | 40.0% | |
| ATAGATATACCAGTAGGGAC+TGG | - | chr3.3:32391415-32391434 | MS.gene89405:intron | 40.0% | |
| ATATGCTATAGTCGAGGCTA+AGG | + | chr3.3:32393860-32393879 | None:intergenic | 40.0% | |
| ATGCCTTAGTTAGGTCTGTT+TGG | + | chr3.3:32390148-32390167 | None:intergenic | 40.0% | |
| CAAGATTGTGTACTCAGTTG+TGG | + | chr3.3:32393500-32393519 | None:intergenic | 40.0% | |
| CACAACTGAGTACACAATCT+TGG | - | chr3.3:32393498-32393517 | MS.gene89405:intron | 40.0% | |
| CATGTTAGGTATGGGGATTA+TGG | + | chr3.3:32388340-32388359 | None:intergenic | 40.0% | |
| CATTGCTGTATTGTTGTGGT+TGG | - | chr3.3:32388191-32388210 | MS.gene89405:intron | 40.0% | |
| CTATACTGACGAATCTCAAG+AGG | + | chr3.3:32390747-32390766 | None:intergenic | 40.0% | |
| CTCCCAATTTCACAACTTTC+AGG | + | chr3.3:32391779-32391798 | None:intergenic | 40.0% | |
| CTGCCATTCATGGTTTATTC+GGG | - | chr3.3:32387913-32387932 | MS.gene89405:intron | 40.0% | |
| CTTAGTTAGGTCTGTTTGGT+CGG | + | chr3.3:32390144-32390163 | None:intergenic | 40.0% | |
| CTTCCATTCAAGCTTGAAAC+AGG | - | chr3.3:32387973-32387992 | MS.gene89405:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr3.3:32389332-32389351 | MS.gene89405:CDS | 40.0% | |
| GAACAGGTTGTCGAATTATC+TGG | + | chr3.3:32392720-32392739 | None:intergenic | 40.0% | |
| GAACCCGAATAAACCATGAA+TGG | + | chr3.3:32387919-32387938 | None:intergenic | 40.0% | |
| GACAATATCTCGTACACTTG+TGG | - | chr3.3:32393761-32393780 | MS.gene89405:intron | 40.0% | |
| GACACAATGTAGCAACATGA+CGG | - | chr3.3:32388889-32388908 | MS.gene89405:intron | 40.0% | |
| GATCCAGAAATCGTAACTTG+TGG | + | chr3.3:32389758-32389777 | None:intergenic | 40.0% | |
| GTAGGTCAATTAAACCGAGA+CGG | + | chr3.3:32389144-32389163 | None:intergenic | 40.0% | |
| GTGCCCCATTTAACATAATG+TGG | + | chr3.3:32388992-32389011 | None:intergenic | 40.0% | |
| GTTCAAGAAAGGCAAGGAAA+GGG | - | chr3.3:32389844-32389863 | MS.gene89405:intron | 40.0% | |
| TAAGAAAAACCAGTCCCTAC+TGG | + | chr3.3:32391427-32391446 | None:intergenic | 40.0% | |
| TACGTAATGGTGGTCTTTCT+GGG | + | chr3.3:32389095-32389114 | None:intergenic | 40.0% | |
| TATGCTATAGTCGAGGCTAA+GGG | + | chr3.3:32393859-32393878 | None:intergenic | 40.0% | |
| TATGTGTTTCAACGCATGCA+CGG | - | chr3.3:32388964-32388983 | MS.gene89405:CDS | 40.0% | |
| TCTTCGCATATCTGTGAAGA+AGG | - | chr3.3:32388294-32388313 | MS.gene89405:intron | 40.0% | |
| TGCAAAGGACAAAATCGTGA+GGG | - | chr3.3:32393718-32393737 | MS.gene89405:intron | 40.0% | |
| TTACGTAATGGTGGTCTTTC+TGG | + | chr3.3:32389096-32389115 | None:intergenic | 40.0% | |
| TTAGGTATGGGGATTATGGT+GGG | + | chr3.3:32388336-32388355 | None:intergenic | 40.0% | |
| TTCAAGAAAGGCAAGGAAAG+GGG | - | chr3.3:32389845-32389864 | MS.gene89405:intron | 40.0% | |
| TTGCAAAGGACAAAATCGTG+AGG | - | chr3.3:32393717-32393736 | MS.gene89405:intron | 40.0% | |
| TTTCTGGATCCATCCTTGAT+GGG | - | chr3.3:32389768-32389787 | MS.gene89405:CDS | 40.0% | |
| TTTGTTGAAGGTCAAGTAGC+CGG | - | chr3.3:32393566-32393585 | MS.gene89405:intron | 40.0% | |
| ! | AAACCACGGTAAAAGTGCAT+AGG | - | chr3.3:32391895-32391914 | MS.gene89405:intron | 40.0% |
| ! | AACCACGGTAAAAGTGCATA+GGG | - | chr3.3:32391896-32391915 | MS.gene89405:intron | 40.0% |
| ! | AGACTTGGTTCTCAAGGAAA+AGG | + | chr3.3:32391156-32391175 | None:intergenic | 40.0% |
| ! | ATTTCTGGATCCATCCTTGA+TGG | - | chr3.3:32389767-32389786 | MS.gene89405:CDS | 40.0% |
| ! | CACGATTTTGTCCTTTGCAA+AGG | + | chr3.3:32393717-32393736 | None:intergenic | 40.0% |
| ! | CGAATTATCTGGTTTACAGC+AGG | + | chr3.3:32392709-32392728 | None:intergenic | 40.0% |
| ! | GACGAGTTTGCTCAAGTTAA+AGG | + | chr3.3:32393986-32394005 | None:intergenic | 40.0% |
| ! | GACTTGGTTCTCAAGGAAAA+GGG | + | chr3.3:32391155-32391174 | None:intergenic | 40.0% |
| ! | TACAGGTGTTAGTTTCGTGT+TGG | + | chr3.3:32393260-32393279 | None:intergenic | 40.0% |
| ! | TCCAGAAATCGTAACTTGTG+GGG | + | chr3.3:32389756-32389775 | None:intergenic | 40.0% |
| ! | TTAGAGCGTGTTTGGTTTAG+CGG | + | chr3.3:32391942-32391961 | None:intergenic | 40.0% |
| !!! | CATTTTTGGTTCACAAGAGG+AGG | - | chr3.3:32389895-32389914 | MS.gene89405:intron | 40.0% |
| !!! | GAAACTTCCTGGTTTTGATG+GGG | - | chr3.3:32387948-32387967 | MS.gene89405:intron | 40.0% |
| AAGCTAGCAGTTGGAGAGTT+TGG | + | chr3.3:32391870-32391889 | None:intergenic | 45.0% | |
| ACAATGTAGCAACATGACGG+TGG | - | chr3.3:32388892-32388911 | MS.gene89405:intron | 45.0% | |
| ACATGCTTGCGATGTATGCT+TGG | - | chr3.3:32388856-32388875 | MS.gene89405:intron | 45.0% | |
| ACCCCACAAGTTACGATTTC+TGG | - | chr3.3:32389752-32389771 | MS.gene89405:intron | 45.0% | |
| ACGTAATGGTGGTCTTTCTG+GGG | + | chr3.3:32389094-32389113 | None:intergenic | 45.0% | |
| ACTATAGCAGTGACACACTG+TGG | - | chr3.3:32391467-32391486 | MS.gene89405:intron | 45.0% | |
| AGAGTCCTTATTGTGACACC+TGG | + | chr3.3:32390961-32390980 | None:intergenic | 45.0% | |
| AGATACATAGGAGTGGGAGA+AGG | - | chr3.3:32390350-32390369 | MS.gene89405:intron | 45.0% | |
| AGGATGCTTAGATATGGGGA+TGG | - | chr3.3:32388143-32388162 | MS.gene89405:intron | 45.0% | |
| ATGCTATAGTCGAGGCTAAG+GGG | + | chr3.3:32393858-32393877 | None:intergenic | 45.0% | |
| ATGCTTAGATATGGGGATGG+AGG | - | chr3.3:32388146-32388165 | MS.gene89405:intron | 45.0% | |
| CAAACACAAACCAGTGCTGT+AGG | - | chr3.3:32393081-32393100 | MS.gene89405:intron | 45.0% | |
| CAAGGCAAGATTTGAAGAGG+GGG | + | chr3.3:32389071-32389090 | None:intergenic | 45.0% | |
| CACATGATAAATGGCGTGCA+TGG | - | chr3.3:32393543-32393562 | MS.gene89405:intron | 45.0% | |
| CACCCTGTTTCAAGCTTGAA+TGG | + | chr3.3:32387979-32387998 | None:intergenic | 45.0% | |
| CATACATCGCAAGCATGTGA+TGG | + | chr3.3:32388854-32388873 | None:intergenic | 45.0% | |
| CGACCAAACAGACCTAACTA+AGG | - | chr3.3:32390142-32390161 | MS.gene89405:intron | 45.0% | |
| CGGCCACATATGTTAAGTAG+TGG | + | chr3.3:32394209-32394228 | None:intergenic | 45.0% | |
| CGTGAAATCATCGTGATGTG+CGG | + | chr3.3:32388741-32388760 | None:intergenic | 45.0% | |
| CTATAGCAGTGACACACTGT+GGG | - | chr3.3:32391468-32391487 | MS.gene89405:intron | 45.0% | |
| CTCGTACACTTGTGGATTTG+AGG | - | chr3.3:32393769-32393788 | MS.gene89405:intron | 45.0% | |
| GAGCCACCACCTATGTAAAA+TGG | + | chr3.3:32391641-32391660 | None:intergenic | 45.0% | |
| GCAAGGCAAGATTTGAAGAG+GGG | + | chr3.3:32389072-32389091 | None:intergenic | 45.0% | |
| GCGATAATATCCTACAGCAC+TGG | + | chr3.3:32393094-32393113 | None:intergenic | 45.0% | |
| GCTTATACAGGTCAACAGCA+GGG | + | chr3.3:32392262-32392281 | None:intergenic | 45.0% | |
| GGAAAAGGGACCTGGTAATT+CGG | + | chr3.3:32391141-32391160 | None:intergenic | 45.0% | |
| GGCAAGGCAAGATTTGAAGA+GGG | + | chr3.3:32389073-32389092 | None:intergenic | 45.0% | |
| GGTTCAAGAAAGGCAAGGAA+AGG | - | chr3.3:32389843-32389862 | MS.gene89405:intron | 45.0% | |
| GTACGAGATATTGTCCGCTT+TGG | + | chr3.3:32393756-32393775 | None:intergenic | 45.0% | |
| GTTAGGTATGGGGATTATGG+TGG | + | chr3.3:32388337-32388356 | None:intergenic | 45.0% | |
| TGCTTAGATATGGGGATGGA+GGG | - | chr3.3:32388147-32388166 | MS.gene89405:intron | 45.0% | |
| TGCTTATACAGGTCAACAGC+AGG | + | chr3.3:32392263-32392282 | None:intergenic | 45.0% | |
| TGTGTGGTTCAAGAAAGGCA+AGG | - | chr3.3:32389838-32389857 | MS.gene89405:intron | 45.0% | |
| TTGTTGAAGGTCAAGTAGCC+GGG | - | chr3.3:32393567-32393586 | MS.gene89405:intron | 45.0% | |
| TTTATCTCTTCAGGCACACG+TGG | - | chr3.3:32388924-32388943 | MS.gene89405:intron | 45.0% | |
| ! | ATAGGTGGTGGCTCATATTC+AGG | - | chr3.3:32391647-32391666 | MS.gene89405:CDS | 45.0% |
| ! | CAACACCAGGTGTCACAATA+AGG | - | chr3.3:32390953-32390972 | MS.gene89405:intron | 45.0% |
| ! | TCTGTTTGGTCGGAGGTTTT+TGG | + | chr3.3:32390134-32390153 | None:intergenic | 45.0% |
| !! | CGGTGGGTTTTTATCTCTTC+AGG | - | chr3.3:32388915-32388934 | MS.gene89405:intron | 45.0% |
| !! | TTGGTCGGAGGTTTTTGGAT+GGG | + | chr3.3:32390129-32390148 | None:intergenic | 45.0% |
| !! | TTTGGTCGGAGGTTTTTGGA+TGG | + | chr3.3:32390130-32390149 | None:intergenic | 45.0% |
| !! | ACATATTAAAAAAATTAAAA+TGG | + | chr3.3:32388621-32388640 | None:intergenic | 5.0% |
| !!! | ATTTTAATTAAAAACATTTT+TGG | - | chr3.3:32389881-32389900 | MS.gene89405:intron | 5.0% |
| AAGAAAGGCAAGGAAAGGGG+TGG | - | chr3.3:32389848-32389867 | MS.gene89405:intron | 50.0% | |
| AGTTAGGTCTGTTTGGTCGG+AGG | + | chr3.3:32390141-32390160 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr3.3:32389336-32389355 | MS.gene89405:CDS | 50.0% | |
| ATGTAGCAACATGACGGTGG+CGG | - | chr3.3:32388895-32388914 | MS.gene89405:intron | 50.0% | |
| CAAGGCTCTTCATGTCAGAG+AGG | - | chr3.3:32392909-32392928 | MS.gene89405:intron | 50.0% | |
| CCTCTGACATGCCTTTGCAA+AGG | - | chr3.3:32393703-32393722 | MS.gene89405:intron | 50.0% | |
| CTGGTAATTCGGAGTTTGGC+CGG | + | chr3.3:32391130-32391149 | None:intergenic | 50.0% | |
| GCAGGTGTAGTGATACAGAG+AGG | + | chr3.3:32392691-32392710 | None:intergenic | 50.0% | |
| GGAAGTTCCCCATCAAAACC+AGG | + | chr3.3:32387958-32387977 | None:intergenic | 50.0% | |
| GGACCTGGTAATTCGGAGTT+TGG | + | chr3.3:32391134-32391153 | None:intergenic | 50.0% | |
| GGGCAAGGCAAGATTTGAAG+AGG | + | chr3.3:32389074-32389093 | None:intergenic | 50.0% | |
| GGTCAATTAAACCGAGACGG+AGG | + | chr3.3:32389141-32389160 | None:intergenic | 50.0% | |
| GTTCTCAAGGAAAAGGGACC+TGG | + | chr3.3:32391149-32391168 | None:intergenic | 50.0% | |
| TAGAGCTTGGATGTTGGCGT+TGG | + | chr3.3:32393124-32393143 | None:intergenic | 50.0% | |
| TGGATCCATCCTTGATGGGA+GGG | - | chr3.3:32389772-32389791 | MS.gene89405:CDS | 50.0% | |
| ! | CCTTTGCAAAGGCATGTCAG+AGG | + | chr3.3:32393706-32393725 | None:intergenic | 50.0% |
| ! | GAGTTGCAAGTTCTGGCATG+AGG | + | chr3.3:32390828-32390847 | None:intergenic | 50.0% |
| ! | GTCCCTATGCACTTTTACCG+TGG | + | chr3.3:32391901-32391920 | None:intergenic | 50.0% |
| ! | TGTTTGGTTTAGCGGCAAGC+AGG | + | chr3.3:32391934-32391953 | None:intergenic | 50.0% |
| !! | TCGGAGGTTTTTGGATGGGA+GGG | + | chr3.3:32390125-32390144 | None:intergenic | 50.0% |
| !! | TGGCGTGCATGGTTTGTTGA+AGG | - | chr3.3:32393554-32393573 | MS.gene89405:intron | 50.0% |
| AAGGGTCTTGCCATCGAGTG+TGG | + | chr3.3:32393832-32393851 | None:intergenic | 55.0% | |
| AGGCAAGGAAAGGGGTGGAA+AGG | - | chr3.3:32389853-32389872 | MS.gene89405:intron | 55.0% | |
| AGTCGAGGCTAAGGGGCTAA+AGG | + | chr3.3:32393851-32393870 | None:intergenic | 55.0% | |
| ATACCCTACCCCGTTAACCG+TGG | + | chr3.3:32390240-32390259 | None:intergenic | 55.0% | |
| CGGCCAAACTCCGAATTACC+AGG | - | chr3.3:32391128-32391147 | MS.gene89405:intron | 55.0% | |
| CTGGATCCATCCTTGATGGG+AGG | - | chr3.3:32389771-32389790 | MS.gene89405:CDS | 55.0% | |
| GAGGGGGCAACACGTTAGAA+TGG | + | chr3.3:32389055-32389074 | None:intergenic | 55.0% | |
| GGATCCATCCTTGATGGGAG+GGG | - | chr3.3:32389773-32389792 | MS.gene89405:CDS | 55.0% | |
| GGCAAGGAAAGGGGTGGAAA+GGG | - | chr3.3:32389854-32389873 | MS.gene89405:intron | 55.0% | |
| GGCTCACGCAAGATCCAAAG+CGG | - | chr3.3:32393739-32393758 | MS.gene89405:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr3.3:32389340-32389359 | MS.gene89405:CDS | 55.0% | |
| GTCGAGGCTAAGGGGCTAAA+GGG | + | chr3.3:32393850-32393869 | None:intergenic | 55.0% | |
| GTTCCACGGTTAACGGGGTA+GGG | - | chr3.3:32390234-32390253 | MS.gene89405:intron | 55.0% | |
| TAGCAGTGACACACTGTGGG+TGG | - | chr3.3:32391471-32391490 | MS.gene89405:intron | 55.0% | |
| TGTTCCACGGTTAACGGGGT+AGG | - | chr3.3:32390233-32390252 | MS.gene89405:intron | 55.0% | |
| ! | CTTTGGTTCGTTGGAGGTCC+AGG | - | chr3.3:32390440-32390459 | MS.gene89405:CDS | 55.0% |
| ! | GCTGAAAGTGCAGAGCATCC+TGG | + | chr3.3:32390461-32390480 | None:intergenic | 55.0% |
| !! | ACCTGGTGTTGACGAGGACA+GGG | + | chr3.3:32390944-32390963 | None:intergenic | 55.0% |
| !! | ACGAGGACAGGGAGTGTCAT+CGG | + | chr3.3:32390933-32390952 | None:intergenic | 55.0% |
| !! | ATGGTGGTCTTTCTGGGGCA+AGG | + | chr3.3:32389089-32389108 | None:intergenic | 55.0% |
| !! | CGGAGGTTTTTGGATGGGAG+GGG | + | chr3.3:32390124-32390143 | None:intergenic | 55.0% |
| !! | GTCGGAGGTTTTTGGATGGG+AGG | + | chr3.3:32390126-32390145 | None:intergenic | 55.0% |
| !! | TGTGACACCTGGTGTTGACG+AGG | + | chr3.3:32390950-32390969 | None:intergenic | 55.0% |
| AAACCCTACTCCCTCCGTCC+CGG | + | chr3.3:32389353-32389372 | None:intergenic | 60.0% | |
| ATTCCGGGACGGAGGGAGTA+GGG | - | chr3.3:32389347-32389366 | MS.gene89405:CDS | 60.0% | |
| CATCCTTGATGGGAGGGGAC+GGG | - | chr3.3:32389778-32389797 | MS.gene89405:CDS | 60.0% | |
| CCATCCTTGATGGGAGGGGA+CGG | - | chr3.3:32389777-32389796 | MS.gene89405:CDS | 60.0% | |
| CTTGCCATCGAGTGTGGCGT+GGG | + | chr3.3:32393826-32393845 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr3.3:32389339-32389358 | MS.gene89405:CDS | 60.0% | |
| TATTCCGGGACGGAGGGAGT+AGG | - | chr3.3:32389346-32389365 | MS.gene89405:CDS | 60.0% | |
| TCAACCCACGCCACACTCGA+TGG | - | chr3.3:32393819-32393838 | MS.gene89405:intron | 60.0% | |
| TCCCTGTCCTCGTCAACACC+AGG | - | chr3.3:32390940-32390959 | MS.gene89405:intron | 60.0% | |
| TCTTGCCATCGAGTGTGGCG+TGG | + | chr3.3:32393827-32393846 | None:intergenic | 60.0% | |
| ! | AGCAACATGACGGTGGCGGT+GGG | - | chr3.3:32388899-32388918 | MS.gene89405:intron | 60.0% |
| ! | TAGCAACATGACGGTGGCGG+TGG | - | chr3.3:32388898-32388917 | MS.gene89405:intron | 60.0% |
| !! | CACCTGGTGTTGACGAGGAC+AGG | + | chr3.3:32390945-32390964 | None:intergenic | 60.0% |
| CCGTCCCCTCCCATCAAGGA+TGG | + | chr3.3:32389780-32389799 | None:intergenic | 65.0% | |
| CTTCAGGCACACGTGGACCG+TGG | - | chr3.3:32388931-32388950 | MS.gene89405:intron | 65.0% | |
| TCTCCCGTCCCCTCCCATCA+AGG | + | chr3.3:32389784-32389803 | None:intergenic | 65.0% | |
| TTGATGGGAGGGGACGGGAG+AGG | - | chr3.3:32389783-32389802 | MS.gene89405:CDS | 65.0% | |
| ATGGGAGGGGACGGGAGAGG+AGG | - | chr3.3:32389786-32389805 | MS.gene89405:CDS | 70.0% | |
| TGGGAGGGGACGGGAGAGGA+GGG | - | chr3.3:32389787-32389806 | MS.gene89405:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 32387864 | 32394233 | 32387864 | ID=MS.gene89405 |
| chr3.3 | mRNA | 32387864 | 32394233 | 32387864 | ID=MS.gene89405.t1;Parent=MS.gene89405 |
| chr3.3 | exon | 32394102 | 32394233 | 32394102 | ID=MS.gene89405.t1.exon1;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32394102 | 32394233 | 32394102 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32391600 | 32391745 | 32391600 | ID=MS.gene89405.t1.exon2;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32391600 | 32391745 | 32391600 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32390578 | 32390774 | 32390578 | ID=MS.gene89405.t1.exon3;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32390578 | 32390774 | 32390578 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32390390 | 32390492 | 32390390 | ID=MS.gene89405.t1.exon4;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32390390 | 32390492 | 32390390 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32389951 | 32389988 | 32389951 | ID=MS.gene89405.t1.exon5;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32389951 | 32389988 | 32389951 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32389754 | 32389855 | 32389754 | ID=MS.gene89405.t1.exon6;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32389754 | 32389855 | 32389754 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32389526 | 32389612 | 32389526 | ID=MS.gene89405.t1.exon7;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32389526 | 32389612 | 32389526 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32389332 | 32389445 | 32389332 | ID=MS.gene89405.t1.exon8;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32389332 | 32389445 | 32389332 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32389167 | 32389238 | 32389167 | ID=MS.gene89405.t1.exon9;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32389167 | 32389238 | 32389167 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32388946 | 32389064 | 32388946 | ID=MS.gene89405.t1.exon10;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32388946 | 32389064 | 32388946 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32388509 | 32388622 | 32388509 | ID=MS.gene89405.t1.exon11;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32388509 | 32388622 | 32388509 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| chr3.3 | exon | 32387864 | 32387921 | 32387864 | ID=MS.gene89405.t1.exon12;Parent=MS.gene89405.t1 |
| chr3.3 | CDS | 32387864 | 32387921 | 32387864 | ID=cds.MS.gene89405.t1;Parent=MS.gene89405.t1 |
| Gene Sequence |
| Protein sequence |
