Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049794.t1 | XP_013455950.1 | 98.9 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 4.60E-104 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049794.t1 | O49818 | 95.6 | 182 | 8 | 0 | 1 | 182 | 1 | 182 | 1.6e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049794.t1 | A0A072UKQ3 | 98.9 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 3.3e-104 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene049794 | 0.826343 | 2.86E-54 | -1.69E-46 |
| MS.gene049794 | MS.gene050538 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene050593 | 0.829038 | 6.44E-55 | -1.69E-46 |
| MS.gene049794 | MS.gene050747 | 0.820961 | 5.20E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene050772 | 0.803306 | 3.71E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene050950 | 0.822884 | 1.87E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene051387 | 0.821867 | 3.21E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene051694 | 0.8086 | 2.86E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene052346 | 0.814672 | 1.37E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene052966 | 0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene052982 | 0.850305 | 1.85E-60 | -1.69E-46 |
| MS.gene049794 | MS.gene053203 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene053207 | 0.830585 | 2.70E-55 | -1.69E-46 |
| MS.gene049794 | MS.gene053318 | 0.827792 | 1.29E-54 | -1.69E-46 |
| MS.gene049794 | MS.gene053574 | 0.816851 | 4.47E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene054927 | 0.852692 | 3.91E-61 | -1.69E-46 |
| MS.gene049794 | MS.gene055564 | 0.818011 | 2.45E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene055577 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene055722 | 0.803433 | 3.49E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene056877 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene057331 | 0.813113 | 3.02E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene05837 | 0.816223 | 6.18E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene058700 | 0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene05883 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene059718 | 0.803614 | 3.20E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene060837 | 0.806688 | 7.28E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene06092 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene062227 | 0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene063722 | 0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene064830 | 0.855906 | 4.61E-62 | -1.69E-46 |
| MS.gene049794 | MS.gene065844 | 0.808886 | 2.48E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene065996 | 0.844386 | 7.81E-59 | -1.69E-46 |
| MS.gene049794 | MS.gene066847 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene068029 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene068272 | 0.808962 | 2.39E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene06920 | 0.809503 | 1.83E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene069356 | 0.8203 | 7.38E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene069712 | 0.822666 | 2.10E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene070279 | 0.801543 | 8.57E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene070999 | 0.835829 | 1.34E-56 | -1.69E-46 |
| MS.gene049794 | MS.gene071060 | 0.810655 | 1.03E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene072518 | -0.804245 | 2.37E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene072550 | 0.837082 | 6.41E-57 | -1.69E-46 |
| MS.gene049794 | MS.gene072573 | 0.803725 | 3.04E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene07329 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene073310 | 0.83633 | 9.97E-57 | -1.69E-46 |
| MS.gene049794 | MS.gene08254 | 0.838103 | 3.51E-57 | -1.69E-46 |
| MS.gene049794 | MS.gene09053 | 0.822825 | 1.93E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene09158 | 0.899222 | 2.45E-77 | -1.69E-46 |
| MS.gene049794 | MS.gene09193 | 0.804421 | 2.18E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene21415 | 0.817088 | 3.95E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene21675 | 0.811792 | 5.86E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene21731 | 0.810989 | 8.76E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene21892 | 0.806711 | 7.20E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene24080 | 0.842802 | 2.07E-58 | -1.69E-46 |
| MS.gene049794 | MS.gene24082 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene24631 | 0.808132 | 3.60E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene27117 | 0.831213 | 1.90E-55 | -1.69E-46 |
| MS.gene049794 | MS.gene27876 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene049794 | MS.gene28138 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene28990 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene29833 | 0.80698 | 6.32E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene29992 | 0.85986 | 3.09E-63 | -1.69E-46 |
| MS.gene049794 | MS.gene30748 | 0.832618 | 8.53E-56 | -1.69E-46 |
| MS.gene049794 | MS.gene32766 | 0.813837 | 2.09E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene33017 | 0.815257 | 1.01E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene34308 | 0.810803 | 9.61E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene34319 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene36337 | 0.810963 | 8.87E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene37321 | -0.804868 | 1.76E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene38765 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene39203 | 0.805654 | 1.20E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene39326 | 0.811207 | 7.86E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene42627 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene43482 | 0.820867 | 5.47E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene43963 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene44087 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene44099 | 0.807493 | 4.92E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene44526 | 0.818903 | 1.54E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene44977 | 0.820044 | 8.45E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene46955 | 0.802348 | 5.86E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene48585 | 0.803046 | 4.20E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene48648 | 0.800063 | 1.72E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene49004 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene49872 | 0.812237 | 4.69E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene52776 | 0.828046 | 1.12E-54 | -1.69E-46 |
| MS.gene049794 | MS.gene52883 | 0.803346 | 3.64E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene53510 | 0.809459 | 1.87E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene56713 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene57394 | 0.815279 | 1.00E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene57947 | 0.821911 | 3.14E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene59803 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene60849 | 0.824001 | 1.02E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene60925 | 0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene61160 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene65396 | 0.831446 | 1.66E-55 | -1.69E-46 |
| MS.gene049794 | MS.gene65400 | 0.814312 | 1.64E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene66910 | 0.835048 | 2.10E-56 | -1.69E-46 |
| MS.gene049794 | MS.gene68677 | 0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene68965 | 0.815191 | 1.05E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene69237 | 0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene69694 | 0.819854 | 9.33E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene69695 | 0.821856 | 3.23E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene75432 | 0.805986 | 1.02E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene76425 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene77299 | 0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene78047 | 0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene79947 | 0.810731 | 9.97E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene80887 | -0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene81523 | 0.807922 | 3.99E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene81791 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene81971 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene82008 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene049794 | MS.gene85059 | 0.821868 | 3.21E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene85580 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene88820 | 0.811539 | 6.66E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene88929 | 0.819909 | 9.07E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene89405 | 0.801795 | 7.61E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene89440 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene90216 | 0.823823 | 1.13E-53 | -1.69E-46 |
| MS.gene049794 | MS.gene90483 | 0.819637 | 1.05E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene90772 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene91533 | 0.815215 | 1.04E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene92239 | 0.850171 | 2.02E-60 | -1.69E-46 |
| MS.gene049794 | MS.gene92636 | 0.824792 | 6.66E-54 | -1.69E-46 |
| MS.gene049794 | MS.gene94064 | 0.815675 | 8.19E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene95112 | 0.807659 | 4.54E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene95748 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene96198 | 0.816539 | 5.25E-52 | -1.69E-46 |
| MS.gene049794 | MS.gene96199 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene049794 | MS.gene96348 | 0.841391 | 4.89E-58 | -1.69E-46 |
| MS.gene049794 | MS.gene99535 | 0.807357 | 5.26E-50 | -1.69E-46 |
| MS.gene049794 | MS.gene99774 | 0.815949 | 7.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049794.t1 | MTR_4g057685 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 5.28e-140 | 387 |
| MS.gene049794.t1 | MTR_4g057685 | 98.925 | 186 | 2 | 0 | 1 | 186 | 49 | 234 | 9.78e-140 | 389 |
| MS.gene049794.t1 | MTR_8g102980 | 33.113 | 151 | 70 | 6 | 29 | 175 | 86 | 209 | 1.69e-17 | 79.0 |
| MS.gene049794.t1 | MTR_8g102980 | 33.113 | 151 | 70 | 6 | 29 | 175 | 86 | 209 | 1.91e-17 | 79.0 |
| MS.gene049794.t1 | MTR_4g132270 | 29.605 | 152 | 80 | 4 | 29 | 178 | 16 | 142 | 1.47e-15 | 73.2 |
| MS.gene049794.t1 | MTR_4g132270 | 29.605 | 152 | 80 | 4 | 29 | 178 | 39 | 165 | 1.84e-15 | 73.2 |
| MS.gene049794.t1 | MTR_4g132260 | 30.921 | 152 | 78 | 5 | 29 | 178 | 16 | 142 | 2.24e-15 | 72.4 |
| MS.gene049794.t1 | MTR_2g023500 | 30.872 | 149 | 76 | 5 | 31 | 177 | 24 | 147 | 2.35e-14 | 69.7 |
| MS.gene049794.t1 | MTR_6g087120 | 32.450 | 151 | 71 | 7 | 29 | 175 | 87 | 210 | 3.29e-14 | 69.7 |
| MS.gene049794.t1 | MTR_3g110185 | 30.921 | 152 | 70 | 6 | 31 | 176 | 562 | 684 | 2.55e-13 | 67.8 |
| MS.gene049794.t1 | MTR_3g110185 | 27.333 | 150 | 78 | 5 | 29 | 174 | 690 | 812 | 8.84e-12 | 63.2 |
| MS.gene049794.t1 | MTR_4g039890 | 32.117 | 137 | 62 | 6 | 45 | 177 | 8 | 117 | 4.78e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049794.t1 | AT1G08110 | 81.522 | 184 | 34 | 0 | 3 | 186 | 2 | 185 | 4.86e-109 | 309 |
| MS.gene049794.t1 | AT1G08110 | 81.522 | 184 | 34 | 0 | 3 | 186 | 2 | 185 | 4.86e-109 | 309 |
| MS.gene049794.t1 | AT1G08110 | 81.522 | 184 | 34 | 0 | 3 | 186 | 2 | 185 | 4.86e-109 | 309 |
| MS.gene049794.t1 | AT1G08110 | 81.522 | 184 | 34 | 0 | 3 | 186 | 52 | 235 | 1.71e-108 | 310 |
| MS.gene049794.t1 | AT1G67280 | 35.099 | 151 | 67 | 6 | 29 | 175 | 1 | 124 | 3.10e-18 | 80.1 |
| MS.gene049794.t1 | AT1G67280 | 29.530 | 149 | 73 | 6 | 29 | 173 | 131 | 251 | 7.14e-12 | 62.8 |
| MS.gene049794.t1 | AT1G67280 | 35.099 | 151 | 67 | 6 | 29 | 175 | 89 | 212 | 6.10e-18 | 80.5 |
| MS.gene049794.t1 | AT1G67280 | 29.530 | 149 | 73 | 6 | 29 | 173 | 219 | 339 | 7.57e-12 | 63.2 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 2.30e-16 | 74.3 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 4.66e-16 | 74.3 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 4.66e-16 | 74.3 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 4.66e-16 | 74.3 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 20 | 141 | 4.66e-16 | 74.3 |
| MS.gene049794.t1 | AT1G11840 | 33.557 | 149 | 68 | 6 | 31 | 175 | 59 | 180 | 6.32e-16 | 74.7 |
Find 40 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTCAGCTTGTACTTTA+TGG | 0.231092 | 4.2:+46071544 | MS.gene049794:CDS |
| GAAAGGGATAGCATTTATTA+AGG | 0.277714 | 4.2:+46087717 | MS.gene049794:CDS |
| AATTCTGATCCTCGTGGTTT+TGG | 0.281200 | 4.2:+46072406 | MS.gene049794:CDS |
| TTAAGGATCCTGATGGATAC+TGG | 0.291792 | 4.2:+46087734 | MS.gene049794:CDS |
| AAGTTCAGCTTGTACTTTAT+GGG | 0.322056 | 4.2:+46071545 | MS.gene049794:CDS |
| AAATCTTTCACATGCTTTGA+AGG | 0.328891 | 4.2:-46085520 | None:intergenic |
| GTTTAGTTTGCTTAAGAGAT+TGG | 0.379480 | 4.2:+46071508 | MS.gene049794:intron |
| AAAACAATTGGAAATGTAAC+AGG | 0.384667 | 4.2:+46087775 | MS.gene049794:CDS |
| AGTTTGGACCTTTGCTCAAA+AGG | 0.403037 | 4.2:+46072240 | MS.gene049794:CDS |
| GTTCTATCAACCGAGTTACT+TGG | 0.418891 | 4.2:-46072217 | None:intergenic |
| AACTGTAGATGAAGCTACTA+AGG | 0.437049 | 4.2:+46070339 | MS.gene049794:CDS |
| TTGTGATACCCTTTGAACTC+TGG | 0.470702 | 4.2:-46072379 | None:intergenic |
| TCTACAGTTGCATGGAGACC+AGG | 0.474404 | 4.2:-46070325 | None:intergenic |
| CTTGTACTTTATGGGGTATG+AGG | 0.487117 | 4.2:+46071553 | MS.gene049794:CDS |
| ACTCGGTTGATAGAACAGTT+TGG | 0.493547 | 4.2:+46072224 | MS.gene049794:CDS |
| ATTTCAATCCAGTATCCATC+AGG | 0.500386 | 4.2:-46087742 | None:intergenic |
| TACAAGCTGAACTTCATCTC+AGG | 0.504945 | 4.2:-46071536 | None:intergenic |
| AAAGTGATCCAGAGTTCAAA+GGG | 0.513681 | 4.2:+46072371 | MS.gene049794:CDS |
| AATGGCTGCTTCGGAATCAA+AGG | 0.539933 | 4.2:+46070285 | None:intergenic |
| ATGTGAAAGATTTCAGAACC+TGG | 0.545629 | 4.2:+46085530 | MS.gene049794:CDS |
| TTCGGAATCAAAGGAATCAC+CGG | 0.552614 | 4.2:+46070294 | MS.gene049794:CDS |
| TGGAGACCAGGGTTGTTAGC+CGG | 0.553858 | 4.2:-46070313 | None:intergenic |
| TAGCTTCATCTACAGTTGCA+TGG | 0.555738 | 4.2:-46070333 | None:intergenic |
| GAAAGTGATCCAGAGTTCAA+AGG | 0.558602 | 4.2:+46072370 | MS.gene049794:CDS |
| TCTTAACAAACTCAACTCCC+AGG | 0.559513 | 4.2:-46085548 | None:intergenic |
| GCATTTATTAAGGATCCTGA+TGG | 0.563476 | 4.2:+46087727 | MS.gene049794:CDS |
| AGTTCAGCTTGTACTTTATG+GGG | 0.564812 | 4.2:+46071546 | MS.gene049794:CDS |
| GAATCACCGGCTAACAACCC+TGG | 0.584889 | 4.2:+46070307 | MS.gene049794:CDS |
| CTTATGTTTACAGGACACAT+TGG | 0.591800 | 4.2:+46085480 | MS.gene049794:intron |
| ATCTGAAGCTCCAAGTAACT+CGG | 0.594666 | 4.2:+46072207 | MS.gene049794:CDS |
| TAAAGTAATATACAGTAACT+GGG | 0.605451 | 4.2:+46072342 | MS.gene049794:intron |
| TTTGTTAAGAAACCAGAGGA+TGG | 0.620597 | 4.2:+46085561 | MS.gene049794:CDS |
| ACTGTAGATGAAGCTACTAA+GGG | 0.621301 | 4.2:+46070340 | MS.gene049794:CDS |
| CTACAGTTGCATGGAGACCA+GGG | 0.624177 | 4.2:-46070324 | None:intergenic |
| TGTGAAAGATTTCAGAACCT+GGG | 0.628860 | 4.2:+46085531 | MS.gene049794:CDS |
| TGAGTTTGTTAAGAAACCAG+AGG | 0.656268 | 4.2:+46085557 | MS.gene049794:CDS |
| GAGTTCAAAGGGTATCACAA+TGG | 0.683137 | 4.2:+46072382 | MS.gene049794:CDS |
| AATGGCAATTCTGATCCTCG+TGG | 0.690634 | 4.2:+46072400 | MS.gene049794:CDS |
| AAAGTAATATACAGTAACTG+GGG | 0.707954 | 4.2:+46072343 | MS.gene049794:intron |
| TATCACTTACCAAAACCACG+AGG | 0.836687 | 4.2:-46072415 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 46070286 | 46087810 | 46070286 | ID=MS.gene049794 |
| chr4.2 | mRNA | 46070286 | 46087810 | 46070286 | ID=MS.gene049794.t1;Parent=MS.gene049794 |
| chr4.2 | exon | 46070286 | 46070381 | 46070286 | ID=MS.gene049794.t1.exon1;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46070286 | 46070381 | 46070286 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46071275 | 46071336 | 46071275 | ID=MS.gene049794.t1.exon2;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46071275 | 46071336 | 46071275 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46071514 | 46071574 | 46071514 | ID=MS.gene049794.t1.exon3;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46071514 | 46071574 | 46071514 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46072202 | 46072281 | 46072202 | ID=MS.gene049794.t1.exon4;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46072202 | 46072281 | 46072202 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46072357 | 46072427 | 46072357 | ID=MS.gene049794.t1.exon5;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46072357 | 46072427 | 46072357 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46085493 | 46085582 | 46085493 | ID=MS.gene049794.t1.exon6;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46085493 | 46085582 | 46085493 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| chr4.2 | exon | 46087710 | 46087810 | 46087710 | ID=MS.gene049794.t1.exon7;Parent=MS.gene049794.t1 |
| chr4.2 | CDS | 46087710 | 46087810 | 46087710 | ID=cds.MS.gene049794.t1;Parent=MS.gene049794.t1 |
| Gene Sequence |
| Protein sequence |
