Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89510.t1 | XP_024629520.1 | 81.5 | 298 | 23 | 1 | 1 | 298 | 1 | 266 | 1.00E-113 | 419.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89510.t1 | A0A2K3M0R9 | 62.1 | 298 | 73 | 3 | 2 | 298 | 71 | 329 | 4.8e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene89510 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene89510 | 0.805159 | 1.53E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene89510 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene89510 | 0.804281 | 2.33E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene89510 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene89510 | 0.801666 | 8.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89510.t1 | MTR_4g078510 | 92.517 | 147 | 11 | 0 | 139 | 285 | 36 | 182 | 6.15e-85 | 254 |
| MS.gene89510.t1 | MTR_2g044850 | 86.747 | 83 | 11 | 0 | 216 | 298 | 1 | 83 | 1.95e-35 | 123 |
| MS.gene89510.t1 | MTR_8g467480 | 86.747 | 83 | 11 | 0 | 216 | 298 | 1 | 83 | 3.90e-35 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | 5.4:-48820080 | MS.gene89510:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | 5.4:+48819838 | None:intergenic |
| GGTTGGTGTTAGTGGATTTC+AGG | 0.188067 | 5.4:-48820610 | MS.gene89510:CDS |
| GGAATCAATTAATACATTAT+TGG | 0.196503 | 5.4:-48821359 | MS.gene89510:CDS |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | 5.4:-48820186 | MS.gene89510:CDS |
| TACTGCTGGTTCTATATCTA+TGG | 0.241436 | 5.4:-48821259 | MS.gene89510:CDS |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | 5.4:-48820269 | MS.gene89510:CDS |
| GTTAGTGGATTTCAGGCTTC+AGG | 0.287907 | 5.4:-48820603 | MS.gene89510:intron |
| GAATCAATTAATACATTATT+GGG | 0.289750 | 5.4:-48821358 | MS.gene89510:CDS |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | 5.4:-48820139 | MS.gene89510:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | 5.4:-48820048 | MS.gene89510:CDS |
| TGTATTAATTGATTCCATAT+TGG | 0.323717 | 5.4:+48821366 | None:intergenic |
| CGCTGGTGTTTGTGCAGCCT+TGG | 0.336144 | 5.4:-48820639 | MS.gene89510:CDS |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | 5.4:-48820130 | MS.gene89510:CDS |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | 5.4:+48819857 | None:intergenic |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | 5.4:+48819872 | None:intergenic |
| GATGTACTTTGGCCTGTATT+CGG | 0.382125 | 5.4:+48821395 | None:intergenic |
| AGTACATCTCTGAGCCAATA+TGG | 0.383331 | 5.4:-48821380 | MS.gene89510:CDS |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | 5.4:-48820103 | MS.gene89510:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | 5.4:+48819893 | None:intergenic |
| GGACTGATTTGGCCAGCTGC+TGG | 0.414131 | 5.4:-48820677 | MS.gene89510:CDS |
| AAAATGTAGGAGAATGAAAC+AGG | 0.438908 | 5.4:-48821145 | MS.gene89510:intron |
| ACATTCGAAAGGATAAGAAA+TGG | 0.457529 | 5.4:-48821084 | MS.gene89510:CDS |
| ATGCAAATAATTCCGAATAC+AGG | 0.477271 | 5.4:-48821407 | MS.gene89510:CDS |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | 5.4:+48820184 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | 5.4:-48820038 | MS.gene89510:CDS |
| TATAGAACCAGCAGTATGAA+TGG | 0.497172 | 5.4:+48821266 | None:intergenic |
| ATTGGCTCAGAGATGTACTT+TGG | 0.497630 | 5.4:+48821384 | None:intergenic |
| GCAAATACCTCCTCCACTGC+AGG | 0.498509 | 5.4:+48821115 | None:intergenic |
| TTCTATATCTATGGGTGAGA+AGG | 0.502165 | 5.4:-48821250 | MS.gene89510:CDS |
| ATTTCTTATCCTTTCGAATG+TGG | 0.515569 | 5.4:+48821086 | None:intergenic |
| GGTAGCTCCATTCATACTGC+TGG | 0.517845 | 5.4:-48821273 | MS.gene89510:CDS |
| AGCCACGCCTGCAGTGGAGG+AGG | 0.522287 | 5.4:-48821122 | MS.gene89510:CDS |
| AGGAGCCACGCCTGCAGTGG+AGG | 0.522444 | 5.4:-48821125 | MS.gene89510:CDS |
| CATTCGAAAGGATAAGAAAT+GGG | 0.523660 | 5.4:-48821083 | MS.gene89510:CDS |
| TACCTCCTCCACTGCAGGCG+TGG | 0.527940 | 5.4:+48821120 | None:intergenic |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | 5.4:+48819902 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | 5.4:+48820197 | None:intergenic |
| AACAGGAGCCACGCCTGCAG+TGG | 0.538426 | 5.4:-48821128 | MS.gene89510:CDS |
| TGCTCTTTGCCACATTCGAA+AGG | 0.544773 | 5.4:-48821095 | MS.gene89510:CDS |
| GCAAATCGTGCTTCAACTCA+AGG | 0.546016 | 5.4:-48821294 | MS.gene89510:CDS |
| ACTGCTGGTTCTATATCTAT+GGG | 0.548230 | 5.4:-48821258 | MS.gene89510:CDS |
| GGGTGAGAAGGGACGTAGGA+TGG | 0.568413 | 5.4:-48821238 | MS.gene89510:intron |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | 5.4:-48820242 | MS.gene89510:CDS |
| TCTATATCTATGGGTGAGAA+GGG | 0.583739 | 5.4:-48821249 | MS.gene89510:CDS |
| GAGGTATGATGTGGCAAGAG+AGG | 0.586967 | 5.4:-48821437 | None:intergenic |
| ATGTCTCAAAATCAAGAGGA+AGG | 0.589667 | 5.4:-48820238 | MS.gene89510:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | 5.4:-48820182 | MS.gene89510:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | 5.4:+48819896 | None:intergenic |
| CTAGATTCAGAGGTATGATG+TGG | 0.651801 | 5.4:-48821446 | None:intergenic |
| CTATGGGTGAGAAGGGACGT+AGG | 0.656674 | 5.4:-48821242 | MS.gene89510:CDS |
| TCTCAAAATCAAGAGGAAGG+AGG | 0.661677 | 5.4:-48820235 | MS.gene89510:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | 5.4:-48820166 | MS.gene89510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATGATAATATTGATAT+GGG | - | chr5.4:48820257-48820276 | MS.gene89510:CDS | 15.0% |
| !! | GAATCAATTAATACATTATT+GGG | - | chr5.4:48819894-48819913 | MS.gene89510:CDS | 15.0% |
| !! | TAAAAAAAAAAACCTTATCA+AGG | + | chr5.4:48820791-48820810 | None:intergenic | 15.0% |
| !! | TAGTTATGATAATATTGATA+TGG | - | chr5.4:48820256-48820275 | MS.gene89510:CDS | 15.0% |
| !!! | AAATTTTAAGAATTTATCAG+TGG | - | chr5.4:48819927-48819946 | MS.gene89510:CDS | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | - | chr5.4:48820912-48820931 | MS.gene89510:intron | 15.0% |
| !!! | TTTTTAATAATTAGATTGCT+AGG | - | chr5.4:48820322-48820341 | MS.gene89510:intron | 15.0% |
| !! | GGAATCAATTAATACATTAT+TGG | - | chr5.4:48819893-48819912 | MS.gene89510:CDS | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | + | chr5.4:48820893-48820912 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | - | chr5.4:48820951-48820970 | MS.gene89510:intron | 20.0% |
| !!! | AAATTTTCTCATTGAAGTTA+TGG | - | chr5.4:48820082-48820101 | MS.gene89510:CDS | 20.0% |
| !!! | AGGTTTTTTTTTTTATTGAG+TGG | - | chr5.4:48820796-48820815 | MS.gene89510:intron | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | - | chr5.4:48821184-48821203 | MS.gene89510:intron | 20.0% |
| !!! | TGTATTAATTGATTCCATAT+TGG | + | chr5.4:48819889-48819908 | None:intergenic | 20.0% |
| !!! | TTAATTTGTGAACAACATAT+TGG | - | chr5.4:48820059-48820078 | MS.gene89510:CDS | 20.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | - | chr5.4:48821113-48821132 | MS.gene89510:CDS | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | - | chr5.4:48820950-48820969 | MS.gene89510:intron | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | - | chr5.4:48821107-48821126 | MS.gene89510:CDS | 25.0% |
| ! | TAATAATTAGATTGCTAGGT+GGG | - | chr5.4:48820326-48820345 | MS.gene89510:intron | 25.0% |
| ! | TATGATAATATTGATATGGG+AGG | - | chr5.4:48820260-48820279 | MS.gene89510:CDS | 25.0% |
| ! | TGAAGTTATGGAAAAAATGT+AGG | - | chr5.4:48820094-48820113 | MS.gene89510:CDS | 25.0% |
| ! | TTAATAATTAGATTGCTAGG+TGG | - | chr5.4:48820325-48820344 | MS.gene89510:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | - | chr5.4:48821172-48821191 | MS.gene89510:intron | 25.0% |
| !! | TGATTTGGAAGATTAGAAAT+GGG | - | chr5.4:48820295-48820314 | MS.gene89510:intron | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | + | chr5.4:48821104-48821123 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | + | chr5.4:48821105-48821124 | None:intergenic | 25.0% |
| AAAATGTAGGAGAATGAAAC+AGG | - | chr5.4:48820107-48820126 | MS.gene89510:CDS | 30.0% | |
| AACCTTATCAAGGAAAACAA+AGG | + | chr5.4:48820781-48820800 | None:intergenic | 30.0% | |
| AATGCTTCGAAGTATACTAT+TGG | - | chr5.4:48821149-48821168 | MS.gene89510:intron | 30.0% | |
| ACATTCGAAAGGATAAGAAA+TGG | - | chr5.4:48820168-48820187 | MS.gene89510:CDS | 30.0% | |
| ACCTTATCAAGGAAAACAAA+GGG | + | chr5.4:48820780-48820799 | None:intergenic | 30.0% | |
| ATCATCATTGTTTGCATTAG+AGG | + | chr5.4:48821417-48821436 | None:intergenic | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | - | chr5.4:48821010-48821029 | MS.gene89510:intron | 30.0% | |
| ATGCAAATAATTCCGAATAC+AGG | - | chr5.4:48819845-48819864 | MS.gene89510:CDS | 30.0% | |
| ATTTCTTATCCTTTCGAATG+TGG | + | chr5.4:48820169-48820188 | None:intergenic | 30.0% | |
| CATTCGAAAGGATAAGAAAT+GGG | - | chr5.4:48820169-48820188 | MS.gene89510:CDS | 30.0% | |
| CCAAGAGCAAAAACAAAAAT+TGG | - | chr5.4:48821259-48821278 | MS.gene89510:CDS | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | - | chr5.4:48821214-48821233 | MS.gene89510:intron | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | - | chr5.4:48821122-48821141 | MS.gene89510:CDS | 30.0% |
| ! | GTGATTTGGAAGATTAGAAA+TGG | - | chr5.4:48820294-48820313 | MS.gene89510:intron | 30.0% |
| ! | TCATTTGGTTCATCTTGAAT+AGG | + | chr5.4:48821383-48821402 | None:intergenic | 30.0% |
| !! | GTTTTTACTGTTTTTCTGCA+GGG | - | chr5.4:48820554-48820573 | MS.gene89510:intron | 30.0% |
| !! | TTCTTTGGGAGTTTTTCTTT+GGG | - | chr5.4:48820734-48820753 | MS.gene89510:intron | 30.0% |
| !! | TTTCTTTGGGAGTTTTTCTT+TGG | - | chr5.4:48820733-48820752 | MS.gene89510:intron | 30.0% |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | + | chr5.4:48821262-48821281 | None:intergenic | 30.0% |
| AAACTCCCAAAGAAACCAAA+CGG | + | chr5.4:48820728-48820747 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | - | chr5.4:48821070-48821089 | MS.gene89510:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | + | chr5.4:48821058-48821077 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | - | chr5.4:48821014-48821033 | MS.gene89510:intron | 35.0% | |
| TAACACCAACCAAAAAACCA+AGG | + | chr5.4:48820633-48820652 | None:intergenic | 35.0% | |
| TATAGAACCAGCAGTATGAA+TGG | + | chr5.4:48819989-48820008 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | + | chr5.4:48820887-48820906 | None:intergenic | 35.0% | |
| TCTATATCTATGGGTGAGAA+GGG | - | chr5.4:48820003-48820022 | MS.gene89510:CDS | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | - | chr5.4:48821204-48821223 | MS.gene89510:intron | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | + | chr5.4:48821071-48821090 | None:intergenic | 35.0% | |
| TTCTATATCTATGGGTGAGA+AGG | - | chr5.4:48820002-48820021 | MS.gene89510:CDS | 35.0% | |
| !! | ACTGCTGGTTCTATATCTAT+GGG | - | chr5.4:48819994-48820013 | MS.gene89510:CDS | 35.0% |
| !! | GGTTTTTACTGTTTTTCTGC+AGG | - | chr5.4:48820553-48820572 | MS.gene89510:intron | 35.0% |
| !! | TACTGCTGGTTCTATATCTA+TGG | - | chr5.4:48819993-48820012 | MS.gene89510:CDS | 35.0% |
| !!! | TCCCTTTGTTTTCCTTGATA+AGG | - | chr5.4:48820776-48820795 | MS.gene89510:intron | 35.0% |
| AGGTAGCAATTTGGGTGATT+TGG | - | chr5.4:48820280-48820299 | MS.gene89510:CDS | 40.0% | |
| AGTACATCTCTGAGCCAATA+TGG | - | chr5.4:48819872-48819891 | MS.gene89510:CDS | 40.0% | |
| AGTAGGTAAAGGTTATGTCG+TGG | - | chr5.4:48820361-48820380 | MS.gene89510:intron | 40.0% | |
| CACTCGTAGTACATACAAGT+CGG | + | chr5.4:48820414-48820433 | None:intergenic | 40.0% | |
| GATATGGGAGGTAGCAATTT+GGG | - | chr5.4:48820272-48820291 | MS.gene89510:CDS | 40.0% | |
| GATGTACTTTGGCCTGTATT+CGG | + | chr5.4:48819860-48819879 | None:intergenic | 40.0% | |
| GGAATGCTTGAATAGATGAC+TGG | - | chr5.4:48820449-48820468 | MS.gene89510:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | - | chr5.4:48821095-48821114 | MS.gene89510:CDS | 40.0% | |
| GTCATCTATTCAAGCATTCC+CGG | + | chr5.4:48820449-48820468 | None:intergenic | 40.0% | |
| TCATCTATTCAAGCATTCCC+GGG | + | chr5.4:48820448-48820467 | None:intergenic | 40.0% | |
| TCTCAAAATCAAGAGGAAGG+AGG | - | chr5.4:48821017-48821036 | MS.gene89510:intron | 40.0% | |
| TGATATGGGAGGTAGCAATT+TGG | - | chr5.4:48820271-48820290 | MS.gene89510:CDS | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | - | chr5.4:48821066-48821085 | MS.gene89510:CDS | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | + | chr5.4:48820878-48820897 | None:intergenic | 40.0% |
| ! | ATTGGCTCAGAGATGTACTT+TGG | + | chr5.4:48819871-48819890 | None:intergenic | 40.0% |
| ! | CTTAGCCGTTTGGTTTCTTT+GGG | - | chr5.4:48820720-48820739 | MS.gene89510:intron | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | - | chr5.4:48820983-48821002 | MS.gene89510:intron | 40.0% |
| ! | TTAGTGTCTGTGTTGTTAGC+AGG | - | chr5.4:48820683-48820702 | MS.gene89510:intron | 40.0% |
| ! | TTTTTCTGCAGGGACTGATT+TGG | - | chr5.4:48820564-48820583 | MS.gene89510:intron | 40.0% |
| !!! | GGTTTTTTGGTTGGTGTTAG+TGG | - | chr5.4:48820634-48820653 | MS.gene89510:CDS | 40.0% |
| !!! | TTTGTGCAGCCTTGGTTTTT+TGG | - | chr5.4:48820621-48820640 | MS.gene89510:CDS | 40.0% |
| AGGTAAAGGTTATGTCGTGG+AGG | - | chr5.4:48820364-48820383 | MS.gene89510:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | + | chr5.4:48821353-48821372 | None:intergenic | 45.0% | |
| CATCTATTCAAGCATTCCCG+GGG | + | chr5.4:48820447-48820466 | None:intergenic | 45.0% | |
| CGACTTGTATGTACTACGAG+TGG | - | chr5.4:48820412-48820431 | MS.gene89510:intron | 45.0% | |
| CTGCTTCTGTAGCTTGGTTA+GGG | - | chr5.4:48820526-48820545 | MS.gene89510:intron | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | + | chr5.4:48821398-48821417 | None:intergenic | 45.0% | |
| GCAAATCGTGCTTCAACTCA+AGG | - | chr5.4:48819958-48819977 | MS.gene89510:CDS | 45.0% | |
| GTATGTACTACGAGTGGTGT+TGG | - | chr5.4:48820418-48820437 | MS.gene89510:intron | 45.0% | |
| TAAAGGTTATGTCGTGGAGG+TGG | - | chr5.4:48820367-48820386 | MS.gene89510:intron | 45.0% | |
| TGCTCTTTGCCACATTCGAA+AGG | - | chr5.4:48820157-48820176 | MS.gene89510:CDS | 45.0% | |
| ! | GCTTAGCCGTTTGGTTTCTT+TGG | - | chr5.4:48820719-48820738 | MS.gene89510:intron | 45.0% |
| ! | GTTTTCCTGCTTCTGTAGCT+TGG | - | chr5.4:48820520-48820539 | MS.gene89510:intron | 45.0% |
| ! | TGGATTTCAGGCTTCAGGTT+TGG | - | chr5.4:48820654-48820673 | MS.gene89510:CDS | 45.0% |
| !! | GGTTGGTGTTAGTGGATTTC+AGG | - | chr5.4:48820642-48820661 | MS.gene89510:CDS | 45.0% |
| !! | GTTAGTGGATTTCAGGCTTC+AGG | - | chr5.4:48820649-48820668 | MS.gene89510:CDS | 45.0% |
| !! | TGACTTGGTGGAGTAGGTAA+AGG | - | chr5.4:48820350-48820369 | MS.gene89510:intron | 45.0% |
| !!! | GGCTTTTTTGTTTTCCCTGC+TGG | - | chr5.4:48820470-48820489 | MS.gene89510:intron | 45.0% |
| !!! | TGCAGCCTTGGTTTTTTGGT+TGG | - | chr5.4:48820625-48820644 | MS.gene89510:CDS | 45.0% |
| !!! | TGTGGCGCTGCTGTTTTTAT+TGG | - | chr5.4:48820493-48820512 | MS.gene89510:intron | 45.0% |
| !!! | TTTTGTTTTCCCTGCTGGTG+TGG | - | chr5.4:48820475-48820494 | MS.gene89510:intron | 45.0% |
| !!! | TAAATTCTTAAAATTTTTAT+CGG | + | chr5.4:48819923-48819942 | None:intergenic | 5.0% |
| ATGTCGTGGAGGTGGTTGTT+AGG | - | chr5.4:48820375-48820394 | MS.gene89510:intron | 50.0% | |
| CCAAACGCAGTTACCTGTGA+TGG | + | chr5.4:48820825-48820844 | None:intergenic | 50.0% | |
| CCATCACAGGTAACTGCGTT+TGG | - | chr5.4:48820822-48820841 | MS.gene89510:intron | 50.0% | |
| CCTAACCAAGCTACAGAAGC+AGG | + | chr5.4:48820528-48820547 | None:intergenic | 50.0% | |
| CCTGCTTCTGTAGCTTGGTT+AGG | - | chr5.4:48820525-48820544 | MS.gene89510:intron | 50.0% | |
| GATTGCTAGGTGGGATGACT+TGG | - | chr5.4:48820335-48820354 | MS.gene89510:intron | 50.0% | |
| GGTAGCTCCATTCATACTGC+TGG | - | chr5.4:48819979-48819998 | MS.gene89510:CDS | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | + | chr5.4:48821359-48821378 | None:intergenic | 50.0% | |
| TATTGAGTGGCTGCCATCAC+AGG | - | chr5.4:48820809-48820828 | MS.gene89510:intron | 50.0% | |
| TGGAAGGAAGTAGCTCCCAA+AGG | - | chr5.4:48821086-48821105 | MS.gene89510:CDS | 50.0% | |
| TGTTGTTAGCAGGTGGTGTG+TGG | - | chr5.4:48820693-48820712 | MS.gene89510:intron | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | + | chr5.4:48821362-48821381 | None:intergenic | 50.0% |
| ! | GTGTCTGTGTTGTTAGCAGG+TGG | - | chr5.4:48820686-48820705 | MS.gene89510:intron | 50.0% |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | + | chr5.4:48820873-48820892 | None:intergenic | 50.0% |
| !!! | TTGGCCAGCTGCTGGTTTTT+GGG | - | chr5.4:48820583-48820602 | MS.gene89510:intron | 50.0% |
| !!! | TTTGGCCAGCTGCTGGTTTT+TGG | - | chr5.4:48820582-48820601 | MS.gene89510:intron | 50.0% |
| CTATGGGTGAGAAGGGACGT+AGG | - | chr5.4:48820010-48820029 | MS.gene89510:CDS | 55.0% | |
| CTGTAGCTTGGTTAGGGAGC+TGG | - | chr5.4:48820532-48820551 | MS.gene89510:intron | 55.0% | |
| GCAAATACCTCCTCCACTGC+AGG | + | chr5.4:48820140-48820159 | None:intergenic | 55.0% | |
| GTGTGGAAGGCTTAGCCGTT+TGG | - | chr5.4:48820710-48820729 | MS.gene89510:intron | 55.0% | |
| GTTAGCAGGTGGTGTGTGGA+AGG | - | chr5.4:48820697-48820716 | MS.gene89510:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | - | chr5.4:48820840-48820859 | MS.gene89510:intron | 55.0% | |
| ! | ACGAGTGGTGTTGGAATCCC+CGG | - | chr5.4:48820427-48820446 | MS.gene89510:intron | 55.0% |
| ! | TCAGGCTTCAGGTTTGGCAG+TGG | - | chr5.4:48820660-48820679 | MS.gene89510:CDS | 55.0% |
| ! | TGCTAGGTGGGATGACTTGG+TGG | - | chr5.4:48820338-48820357 | MS.gene89510:intron | 55.0% |
| !! | GTGGGATGACTTGGTGGAGT+AGG | - | chr5.4:48820344-48820363 | MS.gene89510:intron | 55.0% |
| !!! | CAGCTGCTGGTTTTTGGGTG+GGG | - | chr5.4:48820588-48820607 | MS.gene89510:intron | 55.0% |
| !!! | CCAGCTGCTGGTTTTTGGGT+GGG | - | chr5.4:48820587-48820606 | MS.gene89510:intron | 55.0% |
| CCCACCCAAAAACCAGCAGC+TGG | + | chr5.4:48820590-48820609 | None:intergenic | 60.0% | |
| CGCTGGTGTTTGTGCAGCCT+TGG | - | chr5.4:48820613-48820632 | MS.gene89510:CDS | 60.0% | |
| GGGTGAGAAGGGACGTAGGA+TGG | - | chr5.4:48820014-48820033 | MS.gene89510:CDS | 60.0% | |
| ! | CGAGTGGTGTTGGAATCCCC+GGG | - | chr5.4:48820428-48820447 | MS.gene89510:intron | 60.0% |
| !! | GGACTGATTTGGCCAGCTGC+TGG | - | chr5.4:48820575-48820594 | MS.gene89510:intron | 60.0% |
| !!! | GCCAGCTGCTGGTTTTTGGG+TGG | - | chr5.4:48820586-48820605 | MS.gene89510:intron | 60.0% |
| AACAGCAGCGCCACACCAGC+AGG | + | chr5.4:48820488-48820507 | None:intergenic | 65.0% | |
| AACAGGAGCCACGCCTGCAG+TGG | - | chr5.4:48820124-48820143 | MS.gene89510:CDS | 65.0% | |
| ACAGCAGCGCCACACCAGCA+GGG | + | chr5.4:48820487-48820506 | None:intergenic | 65.0% | |
| TACCTCCTCCACTGCAGGCG+TGG | + | chr5.4:48820135-48820154 | None:intergenic | 65.0% | |
| !!! | GGTTTTTGGGTGGGGTGCGC+TGG | - | chr5.4:48820596-48820615 | MS.gene89510:intron | 65.0% |
| AGCCACGCCTGCAGTGGAGG+AGG | - | chr5.4:48820130-48820149 | MS.gene89510:CDS | 70.0% | |
| AGGAGCCACGCCTGCAGTGG+AGG | - | chr5.4:48820127-48820146 | MS.gene89510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 48819820 | 48821454 | 48819820 | ID=MS.gene89510 |
| chr5.4 | mRNA | 48819820 | 48821454 | 48819820 | ID=MS.gene89510.t1;Parent=MS.gene89510 |
| chr5.4 | exon | 48821239 | 48821454 | 48821239 | ID=MS.gene89510.t1.exon1;Parent=MS.gene89510.t1 |
| chr5.4 | CDS | 48821239 | 48821454 | 48821239 | ID=cds.MS.gene89510.t1;Parent=MS.gene89510.t1 |
| chr5.4 | exon | 48821057 | 48821158 | 48821057 | ID=MS.gene89510.t1.exon2;Parent=MS.gene89510.t1 |
| chr5.4 | CDS | 48821057 | 48821158 | 48821057 | ID=cds.MS.gene89510.t1;Parent=MS.gene89510.t1 |
| chr5.4 | exon | 48820604 | 48820699 | 48820604 | ID=MS.gene89510.t1.exon3;Parent=MS.gene89510.t1 |
| chr5.4 | CDS | 48820604 | 48820699 | 48820604 | ID=cds.MS.gene89510.t1;Parent=MS.gene89510.t1 |
| chr5.4 | exon | 48819820 | 48820302 | 48819820 | ID=MS.gene89510.t1.exon4;Parent=MS.gene89510.t1 |
| chr5.4 | CDS | 48819820 | 48820302 | 48819820 | ID=cds.MS.gene89510.t1;Parent=MS.gene89510.t1 |
| Gene Sequence |
| Protein sequence |
