Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89523.t1 | XP_013463088.1 | 69.3 | 114 | 27 | 2 | 14 | 127 | 75 | 180 | 1.50E-31 | 146.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89523.t1 | Q9MAX6 | 69.1 | 94 | 24 | 1 | 34 | 127 | 90 | 178 | 1.8e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89523.t1 | Q5QQ34 | 69.3 | 114 | 27 | 2 | 14 | 127 | 75 | 180 | 1.1e-31 | 146.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene89523 | 0.872399 | 3.28E-67 | -1.69E-46 |
| MS.gene056167 | MS.gene89523 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene060036 | MS.gene89523 | 0.809189 | 2.14E-50 | -1.69E-46 |
| MS.gene060923 | MS.gene89523 | 0.808216 | 3.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89523.t1 | MTR_2g032130 | 96.000 | 75 | 3 | 0 | 53 | 127 | 106 | 180 | 4.36e-44 | 151 |
| MS.gene89523.t1 | MTR_4g103520 | 90.278 | 72 | 7 | 0 | 124 | 195 | 232 | 303 | 2.15e-38 | 141 |
| MS.gene89523.t1 | MTR_4g103520 | 90.278 | 72 | 7 | 0 | 124 | 195 | 309 | 380 | 3.72e-38 | 141 |
| MS.gene89523.t1 | MTR_7g113920 | 85.507 | 69 | 10 | 0 | 196 | 264 | 220 | 288 | 1.48e-36 | 132 |
| MS.gene89523.t1 | MTR_3g074960 | 76.000 | 75 | 18 | 0 | 124 | 198 | 266 | 340 | 1.61e-32 | 124 |
| MS.gene89523.t1 | MTR_8g063080 | 73.611 | 72 | 19 | 0 | 124 | 195 | 294 | 365 | 3.12e-31 | 122 |
| MS.gene89523.t1 | MTR_3g074930 | 76.389 | 72 | 17 | 0 | 124 | 195 | 312 | 383 | 6.38e-31 | 121 |
| MS.gene89523.t1 | MTR_3g074930 | 76.389 | 72 | 17 | 0 | 124 | 195 | 305 | 376 | 7.08e-31 | 120 |
| MS.gene89523.t1 | MTR_5g045600 | 76.389 | 72 | 17 | 0 | 124 | 195 | 301 | 372 | 1.43e-30 | 120 |
| MS.gene89523.t1 | MTR_3g074970 | 66.234 | 77 | 23 | 1 | 124 | 200 | 254 | 327 | 3.95e-27 | 110 |
| MS.gene89523.t1 | MTR_1g082360 | 65.217 | 69 | 24 | 0 | 196 | 264 | 188 | 256 | 2.93e-26 | 104 |
| MS.gene89523.t1 | MTR_4g128220 | 85.185 | 54 | 8 | 0 | 1 | 54 | 1 | 54 | 2.82e-23 | 97.4 |
| MS.gene89523.t1 | MTR_4g128220 | 85.185 | 54 | 8 | 0 | 1 | 54 | 1 | 54 | 2.88e-23 | 97.1 |
| MS.gene89523.t1 | MTR_4g128220 | 85.185 | 54 | 8 | 0 | 1 | 54 | 1 | 54 | 3.12e-23 | 97.1 |
| MS.gene89523.t1 | MTR_5g010090 | 49.275 | 69 | 35 | 0 | 196 | 264 | 266 | 334 | 5.47e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89523.t1 | AT2G34840 | 63.265 | 98 | 31 | 1 | 31 | 128 | 14 | 106 | 6.92e-37 | 130 |
| MS.gene89523.t1 | AT1G30630 | 58.182 | 110 | 41 | 1 | 31 | 140 | 92 | 196 | 1.60e-36 | 131 |
| MS.gene89523.t1 | AT2G34840 | 63.265 | 98 | 31 | 1 | 31 | 128 | 93 | 185 | 5.53e-36 | 130 |
| MS.gene89523.t1 | AT5G50400 | 83.333 | 72 | 12 | 0 | 124 | 195 | 221 | 292 | 1.05e-35 | 134 |
| MS.gene89523.t1 | AT5G50400 | 83.333 | 72 | 12 | 0 | 124 | 195 | 293 | 364 | 2.13e-35 | 134 |
| MS.gene89523.t1 | AT4G24890 | 76.389 | 72 | 17 | 0 | 124 | 195 | 297 | 368 | 7.57e-33 | 126 |
| MS.gene89523.t1 | AT1G13750 | 57.292 | 96 | 33 | 1 | 124 | 211 | 295 | 390 | 1.31e-27 | 111 |
| MS.gene89523.t1 | AT3G05170 | 64.516 | 62 | 22 | 0 | 196 | 257 | 192 | 253 | 8.00e-21 | 90.1 |
| MS.gene89523.t1 | AT1G08940 | 50.704 | 71 | 35 | 0 | 196 | 266 | 195 | 265 | 2.94e-19 | 85.5 |
| MS.gene89523.t1 | AT4G30240 | 80.952 | 42 | 8 | 0 | 1 | 42 | 1 | 42 | 3.54e-15 | 74.3 |
| MS.gene89523.t1 | AT2G18860 | 73.810 | 42 | 11 | 0 | 1 | 42 | 1 | 42 | 3.76e-14 | 70.9 |
| MS.gene89523.t1 | AT2G18860 | 73.810 | 42 | 11 | 0 | 1 | 42 | 1 | 42 | 4.93e-14 | 70.9 |
Find 59 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAACTTCTCAACAATTT+TGG | 0.154138 | 5.4:+48669202 | MS.gene89523:CDS |
| TGCAAATGCTTGGCTTGATT+TGG | 0.285359 | 5.4:+48666307 | MS.gene89523:CDS |
| TAGCTAATAGTTTCGATCTA+TGG | 0.328698 | 5.4:+48665147 | MS.gene89523:CDS |
| ACAAACCTGGCAATCATATA+TGG | 0.330604 | 5.4:-48667947 | None:intergenic |
| CTCTGCAGCTGAGGAAGTTC+AGG | 0.333122 | 5.4:+48665187 | MS.gene89523:CDS |
| GTTCCACTTGAGCTGTGAAT+TGG | 0.431110 | 5.4:-48667907 | None:intergenic |
| AGTTCCGTGTGATGCAGTTT+GGG | 0.433577 | 5.4:+48669233 | MS.gene89523:CDS |
| CAAATGAAGAACTGCTTAAG+TGG | 0.436923 | 5.4:+48669290 | MS.gene89523:CDS |
| TATGGTGTTGTTGATGCAAT+TGG | 0.440796 | 5.4:-48667929 | None:intergenic |
| GAGTTCCGTGTGATGCAGTT+TGG | 0.441309 | 5.4:+48669232 | MS.gene89523:CDS |
| AACATTGTATACCATTCCTC+TGG | 0.447320 | 5.4:-48665744 | None:intergenic |
| ACAATGTTGAGGCTTGTTGC+TGG | 0.449037 | 5.4:+48665759 | MS.gene89523:CDS |
| TCAAGGGAGCCTTGCCGCCA+TGG | 0.449335 | 5.4:-48669354 | None:intergenic |
| CGTGTGATGCAGTTTGGGAC+TGG | 0.458259 | 5.4:+48669238 | MS.gene89523:CDS |
| TTCTGATCAGCTACCATATG+AGG | 0.460428 | 5.4:-48669322 | None:intergenic |
| TTACTCAGCTTGCAAATGCT+TGG | 0.460646 | 5.4:+48666297 | MS.gene89523:CDS |
| ACAGAATGGAATCAGCATAC+AGG | 0.470613 | 5.4:+48665688 | MS.gene89523:intron |
| CAACACCATATATGATTGCC+AGG | 0.473681 | 5.4:+48667942 | MS.gene89523:CDS |
| ATATGGTAGCTGATCAGAAA+TGG | 0.478679 | 5.4:+48669326 | MS.gene89523:CDS |
| CAAGGGAGCCTTGCCGCCAT+GGG | 0.494882 | 5.4:-48669353 | None:intergenic |
| GGTTAAGAGAGAAGAGAGAA+AGG | 0.498990 | 5.4:+48665715 | MS.gene89523:CDS |
| GCGTTGAAGTATACTAATCC+TGG | 0.516471 | 5.4:+48665816 | MS.gene89523:CDS |
| CAGAATGGAATCAGCATACA+GGG | 0.520364 | 5.4:+48665689 | MS.gene89523:intron |
| TACAGTTCCATGGTTCCACC+AGG | 0.522342 | 5.4:-48665834 | None:intergenic |
| TGCTTGGCTTGATTTGGCTG+TGG | 0.525363 | 5.4:+48666313 | MS.gene89523:CDS |
| CAATGTTGAGGCTTGTTGCT+GGG | 0.533934 | 5.4:+48665760 | MS.gene89523:CDS |
| GAGTATAGCAACTACCAACC+TGG | 0.547240 | 5.4:+48667779 | MS.gene89523:CDS |
| GGAGATATATCATATGCAAA+CGG | 0.549334 | 5.4:+48667866 | MS.gene89523:CDS |
| AAATGAAGAACTGCTTAAGT+GGG | 0.557990 | 5.4:+48669291 | MS.gene89523:CDS |
| CACCGCTGACCGGCTTATCG+AGG | 0.559279 | 5.4:+48667811 | MS.gene89523:CDS |
| AGATCTTTATTAAGATGCAT+AGG | 0.563892 | 5.4:+48666216 | MS.gene89523:CDS |
| TGGAATCAGCATACAGGGCA+TGG | 0.573816 | 5.4:+48665694 | MS.gene89523:CDS |
| AAAGGTCAAATCCAGAGGAA+TGG | 0.582421 | 5.4:+48665733 | MS.gene89523:CDS |
| TACTAATCCTGGTGGAACCA+TGG | 0.582879 | 5.4:+48665827 | MS.gene89523:CDS |
| GTGATGCAGTTTGGGACTGG+TGG | 0.583634 | 5.4:+48669241 | MS.gene89523:CDS |
| ATGGTGTGCCCATGGCGGCA+AGG | 0.589094 | 5.4:+48669345 | MS.gene89523:CDS |
| TTCTTTATTCTCTGCAGCTG+AGG | 0.598606 | 5.4:+48665178 | MS.gene89523:CDS |
| CATATGATATATCTCCTATG+TGG | 0.598865 | 5.4:-48667859 | None:intergenic |
| GAGAGAAAGGTCAAATCCAG+AGG | 0.600395 | 5.4:+48665728 | MS.gene89523:CDS |
| GGACCAATTCACAGCTCAAG+TGG | 0.602125 | 5.4:+48667904 | MS.gene89523:CDS |
| GTGTTTCAGGCTGAGCGTGA+TGG | 0.617521 | 5.4:+48667749 | MS.gene89523:intron |
| ATCCTCGATAAGCCGGTCAG+CGG | 0.619038 | 5.4:-48667813 | None:intergenic |
| GACTGGTGGAGAGTACAGCT+TGG | 0.620408 | 5.4:+48669255 | MS.gene89523:CDS |
| GGTCACTTAACACCGCTGAC+CGG | 0.621618 | 5.4:+48667801 | MS.gene89523:CDS |
| CGGTGTTAAGTGACCCAGGT+TGG | 0.628816 | 5.4:-48667793 | None:intergenic |
| CAGTCCCAAACTGCATCACA+CGG | 0.634212 | 5.4:-48669237 | None:intergenic |
| AATTATGCAGCAGATTGATG+AGG | 0.635235 | 5.4:+48666265 | MS.gene89523:CDS |
| GATCAGAAATGGTGTGCCCA+TGG | 0.641634 | 5.4:+48669337 | MS.gene89523:CDS |
| AGGAATGGTATACAATGTTG+AGG | 0.646493 | 5.4:+48665748 | MS.gene89523:CDS |
| AGTATAGCAACTACCAACCT+GGG | 0.650475 | 5.4:+48667780 | MS.gene89523:CDS |
| AATGAAGAACTGCTTAAGTG+GGG | 0.655639 | 5.4:+48669292 | MS.gene89523:CDS |
| AAAATGCTTCAAGGCAGTGG+GGG | 0.655908 | 5.4:-48669388 | None:intergenic |
| TCAGCGGTGTTAAGTGACCC+AGG | 0.658578 | 5.4:-48667797 | None:intergenic |
| AGAGGAAGTGTACATATCAG+CGG | 0.658767 | 5.4:-48665213 | None:intergenic |
| ATGAAGAACTGCTTAAGTGG+GGG | 0.662094 | 5.4:+48669293 | MS.gene89523:CDS |
| TTGAAGTATACTAATCCTGG+TGG | 0.677628 | 5.4:+48665819 | MS.gene89523:CDS |
| AAACGGATACATCTCACAGT+GGG | 0.685499 | 5.4:+48667883 | MS.gene89523:CDS |
| CAGAAATGGTGTGCCCATGG+CGG | 0.769825 | 5.4:+48669340 | MS.gene89523:CDS |
| CAAACGGATACATCTCACAG+TGG | 0.769986 | 5.4:+48667882 | MS.gene89523:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATAGAATTTGATAA+TGG | - | chr5.4:48668933-48668952 | None:intergenic | 10.0% |
| !! | CTAATAATAATTTAAGAAAT+TGG | + | chr5.4:48666431-48666450 | MS.gene89523:intron | 10.0% |
| !!! | GAAATTTTAATTATGTTTAT+AGG | + | chr5.4:48665518-48665537 | MS.gene89523:intron | 10.0% |
| !!! | TATACTTGTTAATATTTTAA+AGG | - | chr5.4:48668307-48668326 | None:intergenic | 10.0% |
| !! | ACTTAATTCATTTAATGAAT+AGG | - | chr5.4:48665630-48665649 | None:intergenic | 15.0% |
| !! | ATTTAACTGTATCTATTTAT+AGG | - | chr5.4:48665914-48665933 | None:intergenic | 15.0% |
| !! | TATAAATAGATACAGTTAAA+TGG | + | chr5.4:48665913-48665932 | MS.gene89523:intron | 15.0% |
| !! | TATTATCGAATAATAATGTT+TGG | - | chr5.4:48668191-48668210 | None:intergenic | 15.0% |
| !! | TTAAAAATATCTTTGTGATT+TGG | + | chr5.4:48666013-48666032 | MS.gene89523:intron | 15.0% |
| !!! | AACTATTTTTTTTACAATGT+CGG | + | chr5.4:48666070-48666089 | MS.gene89523:intron | 15.0% |
| !!! | ATAATTGAAAACATTGATTT+TGG | - | chr5.4:48666702-48666721 | None:intergenic | 15.0% |
| !!! | ATTTATTGTTTTATACAGAA+TGG | + | chr5.4:48665674-48665693 | MS.gene89523:intron | 15.0% |
| !!! | CTTTTACTTATTTTAATTTG+TGG | + | chr5.4:48665429-48665448 | MS.gene89523:intron | 15.0% |
| !!! | TCTAATATTCTTTTATTCAA+TGG | - | chr5.4:48667602-48667621 | None:intergenic | 15.0% |
| !! | ATAAATAAAAGAAAGTGAAG+AGG | - | chr5.4:48665247-48665266 | None:intergenic | 20.0% |
| !! | ATAATTTATTAAGCTGAACT+AGG | - | chr5.4:48668608-48668627 | None:intergenic | 20.0% |
| !! | ATTAATTTCATGTTATACTG+TGG | + | chr5.4:48665281-48665300 | MS.gene89523:intron | 20.0% |
| !! | ATTATTGCTTATTGGAAAAA+AGG | - | chr5.4:48667400-48667419 | None:intergenic | 20.0% |
| !! | ATTCAATGGATGATATATAA+TGG | - | chr5.4:48667588-48667607 | None:intergenic | 20.0% |
| !! | GATTAAGTTTAACTAAAGTT+AGG | - | chr5.4:48668345-48668364 | None:intergenic | 20.0% |
| !! | TAAATAAAAGAAAGTGAAGA+GGG | - | chr5.4:48665246-48665265 | None:intergenic | 20.0% |
| !! | TGAAAATTATTGTACTAAGA+CGG | - | chr5.4:48665655-48665674 | None:intergenic | 20.0% |
| !! | TTAATTTCATGTTATACTGT+GGG | + | chr5.4:48665282-48665301 | MS.gene89523:intron | 20.0% |
| !! | TTCAATGGATGATATATAAT+GGG | - | chr5.4:48667587-48667606 | None:intergenic | 20.0% |
| !! | TTTCTATATTTGTTTGATGA+AGG | + | chr5.4:48668013-48668032 | MS.gene89523:intron | 20.0% |
| !!! | AGCTTAGTTTTTTTGTATAT+AGG | + | chr5.4:48666541-48666560 | MS.gene89523:intron | 20.0% |
| !!! | CAAGTATTATCTTTATTTGT+AGG | + | chr5.4:48667122-48667141 | MS.gene89523:intron | 20.0% |
| !!! | TAAAATGGATTATTGCTTAT+TGG | - | chr5.4:48667408-48667427 | None:intergenic | 20.0% |
| !!! | TTTGGATTTGTTTATAAGTT+TGG | + | chr5.4:48668036-48668055 | MS.gene89523:intron | 20.0% |
| ! | AAAAGCAGAGATTGAAATTA+TGG | - | chr5.4:48667056-48667075 | None:intergenic | 25.0% |
| ! | AAAGAATTAAGATCTCATCA+AGG | - | chr5.4:48666965-48666984 | None:intergenic | 25.0% |
| ! | ACAGTAGAATATCTTATTCT+AGG | - | chr5.4:48668379-48668398 | None:intergenic | 25.0% |
| ! | ACATAACTATTAGAACTTAG+AGG | - | chr5.4:48668743-48668762 | None:intergenic | 25.0% |
| ! | ACCAAGTAAGAATAATAAAC+AGG | - | chr5.4:48668222-48668241 | None:intergenic | 25.0% |
| ! | ACCTATAGATGAATCAATAT+TGG | + | chr5.4:48667543-48667562 | MS.gene89523:intron | 25.0% |
| ! | AGATCTTTATTAAGATGCAT+AGG | + | chr5.4:48666216-48666235 | MS.gene89523:CDS | 25.0% |
| ! | ATATTTGTTTGATGAAGGTT+TGG | + | chr5.4:48668018-48668037 | MS.gene89523:intron | 25.0% |
| ! | CAAGGAGACAATAATAATTA+AGG | - | chr5.4:48666620-48666639 | None:intergenic | 25.0% |
| ! | TATCGAATAATAATGTTTGG+TGG | - | chr5.4:48668188-48668207 | None:intergenic | 25.0% |
| ! | TCCTGTTTATTATTCTTACT+TGG | + | chr5.4:48668218-48668237 | MS.gene89523:intron | 25.0% |
| ! | TTAAACTAATGTAATGCAGA+GGG | + | chr5.4:48669006-48669025 | MS.gene89523:intron | 25.0% |
| ! | TTAAGTGAAGAGTTTGATAA+TGG | + | chr5.4:48668843-48668862 | MS.gene89523:intron | 25.0% |
| !! | AAAATATCTTTGTGATTTGG+TGG | + | chr5.4:48666016-48666035 | MS.gene89523:intron | 25.0% |
| !! | AAAGATAATACTTGCTAGAA+GGG | - | chr5.4:48667116-48667135 | None:intergenic | 25.0% |
| !! | ACTTTTAACGATAACATTTG+AGG | + | chr5.4:48668123-48668142 | MS.gene89523:intron | 25.0% |
| !! | ATCAGATTGATAGTTCTTAT+TGG | - | chr5.4:48665976-48665995 | None:intergenic | 25.0% |
| !! | CTAAGTTCTAATAGTTATGT+AGG | + | chr5.4:48668743-48668762 | MS.gene89523:intron | 25.0% |
| !! | TAAAGATAATACTTGCTAGA+AGG | - | chr5.4:48667117-48667136 | None:intergenic | 25.0% |
| !! | TTTGAACTTCTCAACAATTT+TGG | + | chr5.4:48669202-48669221 | MS.gene89523:CDS | 25.0% |
| !! | TTTTCTTGAATCTATATGGA+GGG | + | chr5.4:48669067-48669086 | MS.gene89523:intron | 25.0% |
| !!! | AACTATTTTTTGAACACTCA+TGG | + | chr5.4:48665363-48665382 | MS.gene89523:intron | 25.0% |
| !!! | AATATTGATTCATCTATAGG+TGG | - | chr5.4:48667544-48667563 | None:intergenic | 25.0% |
| !!! | ACTATTTTTTGAACACTCAT+GGG | + | chr5.4:48665364-48665383 | MS.gene89523:intron | 25.0% |
| !!! | ATGCATTTTTTATACACTGA+CGG | + | chr5.4:48665864-48665883 | MS.gene89523:intron | 25.0% |
| !!! | ATGTTGGTTTTGTGTTTTTT+AGG | + | chr5.4:48666177-48666196 | MS.gene89523:intron | 25.0% |
| !!! | TATTTTTTTTACAATGTCGG+TGG | + | chr5.4:48666073-48666092 | MS.gene89523:intron | 25.0% |
| !!! | TTCAGATTTTGAAACAGAAT+TGG | + | chr5.4:48666997-48667016 | MS.gene89523:intron | 25.0% |
| !!! | TTGATAATGGTTGTTAGATA+AGG | - | chr5.4:48668920-48668939 | None:intergenic | 25.0% |
| !!! | TTGTTTCTATCTACAATTTG+AGG | - | chr5.4:48667465-48667484 | None:intergenic | 25.0% |
| !!! | TTTAATTTGTGGTATGCAAA+TGG | + | chr5.4:48665440-48665459 | MS.gene89523:intron | 25.0% |
| !!! | TTTTTTCTTGGGTAGTTAAA+TGG | + | chr5.4:48665465-48665484 | MS.gene89523:intron | 25.0% |
| AAATGAAGAACTGCTTAAGT+GGG | + | chr5.4:48669291-48669310 | MS.gene89523:CDS | 30.0% | |
| AGAAATTGGAAGTGATTGAA+TGG | + | chr5.4:48666445-48666464 | MS.gene89523:intron | 30.0% | |
| ATCTCGAAAGTTTGAACTAT+TGG | + | chr5.4:48665543-48665562 | MS.gene89523:intron | 30.0% | |
| ATCTGTATTCACTTTATCTG+AGG | + | chr5.4:48667355-48667374 | MS.gene89523:intron | 30.0% | |
| ATGTACAATGAAAACAAACC+TGG | - | chr5.4:48667963-48667982 | None:intergenic | 30.0% | |
| ATTTGAGGACACTTTCATTT+AGG | + | chr5.4:48668138-48668157 | MS.gene89523:intron | 30.0% | |
| CATATGATATATCTCCTATG+TGG | - | chr5.4:48667862-48667881 | None:intergenic | 30.0% | |
| CTTAAACTAATGTAATGCAG+AGG | + | chr5.4:48669005-48669024 | MS.gene89523:intron | 30.0% | |
| GGAGATATATCATATGCAAA+CGG | + | chr5.4:48667866-48667885 | MS.gene89523:CDS | 30.0% | |
| GTGAATACAGATAAATTCAG+TGG | - | chr5.4:48667347-48667366 | None:intergenic | 30.0% | |
| GTTTGACCAAGTAAAAAACT+TGG | - | chr5.4:48668713-48668732 | None:intergenic | 30.0% | |
| TAAAGTTAGGAACAACACTT+TGG | - | chr5.4:48668332-48668351 | None:intergenic | 30.0% | |
| TAAATGGAACAATAGAGACA+AGG | + | chr5.4:48665481-48665500 | MS.gene89523:intron | 30.0% | |
| TAGATAAGGTGATCATTGTT+TGG | - | chr5.4:48668906-48668925 | None:intergenic | 30.0% | |
| TAGCTAATAGTTTCGATCTA+TGG | + | chr5.4:48665147-48665166 | MS.gene89523:CDS | 30.0% | |
| TCAAACCTATACAAAGAATG+AGG | - | chr5.4:48666874-48666893 | None:intergenic | 30.0% | |
| TCAGTTCAGTCAAACTAAAA+TGG | - | chr5.4:48667423-48667442 | None:intergenic | 30.0% | |
| TCTATTGCTTAATGTGTTTC+AGG | + | chr5.4:48667736-48667755 | MS.gene89523:intron | 30.0% | |
| TTGGACACTAATATGTTGAA+CGG | + | chr5.4:48666477-48666496 | MS.gene89523:intron | 30.0% | |
| ! | ATAGACATTGTTTTCCACAT+AGG | + | chr5.4:48667845-48667864 | MS.gene89523:CDS | 30.0% |
| ! | CAGGTTTTCTTGAATCTATA+TGG | + | chr5.4:48669063-48669082 | MS.gene89523:intron | 30.0% |
| ! | GATTATCTTTTTGCATGAAC+AGG | + | chr5.4:48665782-48665801 | MS.gene89523:CDS | 30.0% |
| ! | GTTTTCTTGAATCTATATGG+AGG | + | chr5.4:48669066-48669085 | MS.gene89523:intron | 30.0% |
| ! | TTGTACATGACTTGTAACAA+TGG | + | chr5.4:48667975-48667994 | MS.gene89523:intron | 30.0% |
| ! | TTTTTAAATCCTCGATAAGC+CGG | - | chr5.4:48667823-48667842 | None:intergenic | 30.0% |
| !! | GACATGTATTAAGCTGATTT+TGG | + | chr5.4:48666904-48666923 | MS.gene89523:intron | 30.0% |
| !! | GCCAATATTGATTCATCTAT+AGG | - | chr5.4:48667547-48667566 | None:intergenic | 30.0% |
| !! | TTGATAATGATGATGAGAAG+AGG | + | chr5.4:48666130-48666149 | MS.gene89523:intron | 30.0% |
| !! | TTTTGACTGCATTCTTTTAC+AGG | + | chr5.4:48668951-48668970 | MS.gene89523:intron | 30.0% |
| !!! | AGATTTTGAAACAGAATTGG+TGG | + | chr5.4:48667000-48667019 | MS.gene89523:intron | 30.0% |
| !!! | ATGCAAATGGAGTTTTTTCT+TGG | + | chr5.4:48665453-48665472 | MS.gene89523:intron | 30.0% |
| !!! | CATTTTTTCTTACAGTTCCA+TGG | - | chr5.4:48665847-48665866 | None:intergenic | 30.0% |
| !!! | CCATTTGTTTTACACAAGTT+GGG | - | chr5.4:48667490-48667509 | None:intergenic | 30.0% |
| !!! | TAAGCACCAAGTTTTTTACT+TGG | + | chr5.4:48668704-48668723 | MS.gene89523:intron | 30.0% |
| !!! | TGCAAATGGAGTTTTTTCTT+GGG | + | chr5.4:48665454-48665473 | MS.gene89523:intron | 30.0% |
| AACATTGTATACCATTCCTC+TGG | - | chr5.4:48665747-48665766 | None:intergenic | 35.0% | |
| AATGAAGAACTGCTTAAGTG+GGG | + | chr5.4:48669292-48669311 | MS.gene89523:CDS | 35.0% | |
| AATTATGCAGCAGATTGATG+AGG | + | chr5.4:48666265-48666284 | MS.gene89523:CDS | 35.0% | |
| ACAAACCTGGCAATCATATA+TGG | - | chr5.4:48667950-48667969 | None:intergenic | 35.0% | |
| AGATACAACCGGTAAAAACA+CGG | - | chr5.4:48668551-48668570 | None:intergenic | 35.0% | |
| AGGAATGGTATACAATGTTG+AGG | + | chr5.4:48665748-48665767 | MS.gene89523:CDS | 35.0% | |
| ATATGGTAGCTGATCAGAAA+TGG | + | chr5.4:48669326-48669345 | MS.gene89523:CDS | 35.0% | |
| ATCCTACAATTGCAGAACAT+AGG | - | chr5.4:48666679-48666698 | None:intergenic | 35.0% | |
| CAAATGAAGAACTGCTTAAG+TGG | + | chr5.4:48669290-48669309 | MS.gene89523:CDS | 35.0% | |
| CCCAACTTGTGTAAAACAAA+TGG | + | chr5.4:48667487-48667506 | MS.gene89523:intron | 35.0% | |
| CTATTAGAACTTAGAGGACT+TGG | - | chr5.4:48668737-48668756 | None:intergenic | 35.0% | |
| CTTGTCTATGTTTGCATCTA+TGG | + | chr5.4:48665316-48665335 | MS.gene89523:intron | 35.0% | |
| GAGGAACATTAGTAAACAAG+AGG | - | chr5.4:48667446-48667465 | None:intergenic | 35.0% | |
| GTGGAATACAAGATGATCAT+TGG | + | chr5.4:48666035-48666054 | MS.gene89523:intron | 35.0% | |
| GTTTAGAAGTGATTGGATGT+TGG | + | chr5.4:48666161-48666180 | MS.gene89523:intron | 35.0% | |
| TCACCAAGATGAAATTAGCA+AGG | - | chr5.4:48666638-48666657 | None:intergenic | 35.0% | |
| TCTCCTTGCTAATTTCATCT+TGG | + | chr5.4:48666632-48666651 | MS.gene89523:intron | 35.0% | |
| TCTGTCCTCATTCTTTGTAT+AGG | + | chr5.4:48666866-48666885 | MS.gene89523:intron | 35.0% | |
| TTCCTATGTTCTGCAATTGT+AGG | + | chr5.4:48666674-48666693 | MS.gene89523:intron | 35.0% | |
| TTGAAGTATACTAATCCTGG+TGG | + | chr5.4:48665819-48665838 | MS.gene89523:CDS | 35.0% | |
| ! | AGTTTCAGAGATCTGAAATG+AGG | + | chr5.4:48667242-48667261 | MS.gene89523:intron | 35.0% |
| ! | TCATTTTCAGTGCGTCATTA+TGG | + | chr5.4:48668794-48668813 | MS.gene89523:intron | 35.0% |
| !! | ATTTCTAGCTAGCAGTAATC+TGG | + | chr5.4:48668654-48668673 | MS.gene89523:intron | 35.0% |
| !! | TATGGTGTTGTTGATGCAAT+TGG | - | chr5.4:48667932-48667951 | None:intergenic | 35.0% |
| !! | TTGCTTGTTTGGCTGTTTTA+AGG | + | chr5.4:48668520-48668539 | MS.gene89523:intron | 35.0% |
| !! | TTTGGAGATGATTTGTTTGC+AGG | + | chr5.4:48669044-48669063 | MS.gene89523:intron | 35.0% |
| !!! | GCCATTTGTTTTACACAAGT+TGG | - | chr5.4:48667491-48667510 | None:intergenic | 35.0% |
| !!! | GCTTTTTTGGTGTTTAAGTG+CGG | + | chr5.4:48668436-48668455 | MS.gene89523:intron | 35.0% |
| AAACGGATACATCTCACAGT+GGG | + | chr5.4:48667883-48667902 | MS.gene89523:CDS | 40.0% | |
| AAAGGTCAAATCCAGAGGAA+TGG | + | chr5.4:48665733-48665752 | MS.gene89523:CDS | 40.0% | |
| AACACTCATGGGAGTGAATT+TGG | + | chr5.4:48665375-48665394 | MS.gene89523:intron | 40.0% | |
| ACACTCATGGGAGTGAATTT+GGG | + | chr5.4:48665376-48665395 | MS.gene89523:intron | 40.0% | |
| ACAGAATGGAATCAGCATAC+AGG | + | chr5.4:48665688-48665707 | MS.gene89523:intron | 40.0% | |
| AGGAAGCAAACAGATACAAC+CGG | - | chr5.4:48668562-48668581 | None:intergenic | 40.0% | |
| AGTATAGCAACTACCAACCT+GGG | + | chr5.4:48667780-48667799 | MS.gene89523:CDS | 40.0% | |
| ATGAAGAACTGCTTAAGTGG+GGG | + | chr5.4:48669293-48669312 | MS.gene89523:CDS | 40.0% | |
| ATGATGAGAAGAGGATGTGA+GGG | + | chr5.4:48666139-48666158 | MS.gene89523:intron | 40.0% | |
| ATGGAACAATAGAGACAAGG+AGG | + | chr5.4:48665484-48665503 | MS.gene89523:intron | 40.0% | |
| CAACACCATATATGATTGCC+AGG | + | chr5.4:48667942-48667961 | MS.gene89523:CDS | 40.0% | |
| CAGAATGGAATCAGCATACA+GGG | + | chr5.4:48665689-48665708 | MS.gene89523:intron | 40.0% | |
| CTATAACAACTACCAGAGCT+CGG | - | chr5.4:48668487-48668506 | None:intergenic | 40.0% | |
| GATTGAATGGATCAGCATGT+TGG | + | chr5.4:48666458-48666477 | MS.gene89523:intron | 40.0% | |
| GCGTTGAAGTATACTAATCC+TGG | + | chr5.4:48665816-48665835 | MS.gene89523:CDS | 40.0% | |
| GGGATCAGCTGGTATTAATT+TGG | + | chr5.4:48669026-48669045 | MS.gene89523:intron | 40.0% | |
| GGTTAAGAGAGAAGAGAGAA+AGG | + | chr5.4:48665715-48665734 | MS.gene89523:CDS | 40.0% | |
| TCCATCTAAACCACCTCATT+AGG | - | chr5.4:48669171-48669190 | None:intergenic | 40.0% | |
| TCCTAATGAGGTGGTTTAGA+TGG | + | chr5.4:48669167-48669186 | MS.gene89523:intron | 40.0% | |
| TGGAACAATAGAGACAAGGA+GGG | + | chr5.4:48665485-48665504 | MS.gene89523:intron | 40.0% | |
| TGTGAGGGTTTAGAAGTGAT+TGG | + | chr5.4:48666154-48666173 | MS.gene89523:intron | 40.0% | |
| TGTTGTCAAAACAACTCAGC+TGG | + | chr5.4:48668414-48668433 | MS.gene89523:intron | 40.0% | |
| TTACTCAGCTTGCAAATGCT+TGG | + | chr5.4:48666297-48666316 | MS.gene89523:CDS | 40.0% | |
| TTCTGATCAGCTACCATATG+AGG | - | chr5.4:48669325-48669344 | None:intergenic | 40.0% | |
| TTCTTTATTCTCTGCAGCTG+AGG | + | chr5.4:48665178-48665197 | MS.gene89523:CDS | 40.0% | |
| ! | ACAAGAGAGGAGCACATATT+AGG | + | chr5.4:48666927-48666946 | MS.gene89523:intron | 40.0% |
| ! | ACGCTGACAGTTTGTTCAAA+AGG | - | chr5.4:48667155-48667174 | None:intergenic | 40.0% |
| ! | AGAGGAAGTGTACATATCAG+CGG | - | chr5.4:48665216-48665235 | None:intergenic | 40.0% |
| ! | CAGAATTGGTGGCTGTTATT+TGG | + | chr5.4:48667011-48667030 | MS.gene89523:intron | 40.0% |
| ! | CATCTCGAGTTTTCCTAATG+AGG | + | chr5.4:48669155-48669174 | MS.gene89523:intron | 40.0% |
| ! | TGCAAATGCTTGGCTTGATT+TGG | + | chr5.4:48666307-48666326 | MS.gene89523:CDS | 40.0% |
| !! | AAGCTGATTTTGGACAAGAG+AGG | + | chr5.4:48666914-48666933 | MS.gene89523:intron | 40.0% |
| !! | AGGAATCACCGTGTTTTTAC+CGG | + | chr5.4:48668540-48668559 | MS.gene89523:intron | 40.0% |
| !!! | AACAACTCAGCTGGCTTTTT+TGG | + | chr5.4:48668423-48668442 | MS.gene89523:intron | 40.0% |
| AAGACACACCTAAGAACGCA+AGG | - | chr5.4:48668582-48668601 | None:intergenic | 45.0% | |
| AAGCTACGTAACTACTTGCG+TGG | - | chr5.4:48668685-48668704 | None:intergenic | 45.0% | |
| AGTGAAGAGGGTTTGAAGAG+AGG | - | chr5.4:48665234-48665253 | None:intergenic | 45.0% | |
| AGTTCCGTGTGATGCAGTTT+GGG | + | chr5.4:48669233-48669252 | MS.gene89523:CDS | 45.0% | |
| CAAACGGATACATCTCACAG+TGG | + | chr5.4:48667882-48667901 | MS.gene89523:CDS | 45.0% | |
| CTTGCTAGAAGGGAAGCTAT+TGG | - | chr5.4:48667106-48667125 | None:intergenic | 45.0% | |
| GAGAGAAAGGTCAAATCCAG+AGG | + | chr5.4:48665728-48665747 | MS.gene89523:CDS | 45.0% | |
| GAGTATAGCAACTACCAACC+TGG | + | chr5.4:48667779-48667798 | MS.gene89523:CDS | 45.0% | |
| GATGATGAGAAGAGGATGTG+AGG | + | chr5.4:48666138-48666157 | MS.gene89523:intron | 45.0% | |
| GCGTCATTATGGATCGTAGT+TGG | + | chr5.4:48668805-48668824 | MS.gene89523:intron | 45.0% | |
| GGGGGACTTTGAACATTCAA+GGG | - | chr5.4:48669373-48669392 | None:intergenic | 45.0% | |
| GTGCAGATCAAGCAACTATC+AGG | + | chr5.4:48667189-48667208 | MS.gene89523:intron | 45.0% | |
| GTTCCACTTGAGCTGTGAAT+TGG | - | chr5.4:48667910-48667929 | None:intergenic | 45.0% | |
| GTTTGCTTCCTTGCGTTCTT+AGG | + | chr5.4:48668571-48668590 | MS.gene89523:intron | 45.0% | |
| TACTAATCCTGGTGGAACCA+TGG | + | chr5.4:48665827-48665846 | MS.gene89523:CDS | 45.0% | |
| TGGAGGGACATTGACATGAA+AGG | + | chr5.4:48669083-48669102 | MS.gene89523:intron | 45.0% | |
| TGGGGGACTTTGAACATTCA+AGG | - | chr5.4:48669374-48669393 | None:intergenic | 45.0% | |
| ! | CTCGAGTTTTCCTAATGAGG+TGG | + | chr5.4:48669158-48669177 | MS.gene89523:intron | 45.0% |
| !! | ACAATGTTGAGGCTTGTTGC+TGG | + | chr5.4:48665759-48665778 | MS.gene89523:CDS | 45.0% |
| !! | CAATGTTGAGGCTTGTTGCT+GGG | + | chr5.4:48665760-48665779 | MS.gene89523:CDS | 45.0% |
| !! | ATATATATATATTAAAGTTA+TGG | + | chr5.4:48666795-48666814 | MS.gene89523:intron | 5.0% |
| !!! | TTTTTTATTTTATGAATTTT+TGG | + | chr5.4:48668069-48668088 | MS.gene89523:intron | 5.0% |
| CAGTCCCAAACTGCATCACA+CGG | - | chr5.4:48669240-48669259 | None:intergenic | 50.0% | |
| CTACGTAACTACTTGCGTGG+AGG | - | chr5.4:48668682-48668701 | None:intergenic | 50.0% | |
| GAGTTCCGTGTGATGCAGTT+TGG | + | chr5.4:48669232-48669251 | MS.gene89523:CDS | 50.0% | |
| GATCAGAAATGGTGTGCCCA+TGG | + | chr5.4:48669337-48669356 | MS.gene89523:CDS | 50.0% | |
| GGACCAATTCACAGCTCAAG+TGG | + | chr5.4:48667904-48667923 | MS.gene89523:CDS | 50.0% | |
| TACAGTTCCATGGTTCCACC+AGG | - | chr5.4:48665837-48665856 | None:intergenic | 50.0% | |
| TGGAATCAGCATACAGGGCA+TGG | + | chr5.4:48665694-48665713 | MS.gene89523:CDS | 50.0% | |
| TGTAATGCAGAGGGATCAGC+TGG | + | chr5.4:48669015-48669034 | MS.gene89523:intron | 50.0% | |
| !! | GCAGATGCGTGTTGCTTGTT+TGG | + | chr5.4:48668509-48668528 | MS.gene89523:intron | 50.0% |
| !! | TGCTTGGCTTGATTTGGCTG+TGG | + | chr5.4:48666313-48666332 | MS.gene89523:CDS | 50.0% |
| ATCCTCGATAAGCCGGTCAG+CGG | - | chr5.4:48667816-48667835 | None:intergenic | 55.0% | |
| CAGAAATGGTGTGCCCATGG+CGG | + | chr5.4:48669340-48669359 | MS.gene89523:CDS | 55.0% | |
| CTCTGCAGCTGAGGAAGTTC+AGG | + | chr5.4:48665187-48665206 | MS.gene89523:CDS | 55.0% | |
| GGTCACTTAACACCGCTGAC+CGG | + | chr5.4:48667801-48667820 | MS.gene89523:CDS | 55.0% | |
| GTGTTTCAGGCTGAGCGTGA+TGG | + | chr5.4:48667749-48667768 | MS.gene89523:intron | 55.0% | |
| ! | CGGTGTTAAGTGACCCAGGT+TGG | - | chr5.4:48667796-48667815 | None:intergenic | 55.0% |
| ! | CGTGTGATGCAGTTTGGGAC+TGG | + | chr5.4:48669238-48669257 | MS.gene89523:CDS | 55.0% |
| ! | GACTGGTGGAGAGTACAGCT+TGG | + | chr5.4:48669255-48669274 | MS.gene89523:CDS | 55.0% |
| ! | GTGATGCAGTTTGGGACTGG+TGG | + | chr5.4:48669241-48669260 | MS.gene89523:CDS | 55.0% |
| ! | TCAGCGGTGTTAAGTGACCC+AGG | - | chr5.4:48667800-48667819 | None:intergenic | 55.0% |
| GTGGGGGCTCTCTCCTCATA+TGG | + | chr5.4:48669309-48669328 | MS.gene89523:CDS | 60.0% | |
| ATGGTGTGCCCATGGCGGCA+AGG | + | chr5.4:48669345-48669364 | MS.gene89523:CDS | 65.0% | |
| CAAGGGAGCCTTGCCGCCAT+GGG | - | chr5.4:48669356-48669375 | None:intergenic | 65.0% | |
| CTACCAGAGCTCGGCAGCAG+CGG | - | chr5.4:48668478-48668497 | None:intergenic | 65.0% | |
| TCAAGGGAGCCTTGCCGCCA+TGG | - | chr5.4:48669357-48669376 | None:intergenic | 65.0% | |
| ! | CACCGCTGACCGGCTTATCG+AGG | + | chr5.4:48667811-48667830 | MS.gene89523:CDS | 65.0% |
| AGAGCTCGGCAGCAGCGGAC+AGG | - | chr5.4:48668473-48668492 | None:intergenic | 70.0% | |
| TGTCCGCTGCTGCCGAGCTC+TGG | + | chr5.4:48668472-48668491 | MS.gene89523:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 48665140 | 48669402 | 48665140 | ID=MS.gene89523 |
| chr5.4 | mRNA | 48665140 | 48669402 | 48665140 | ID=MS.gene89523.t1;Parent=MS.gene89523 |
| chr5.4 | exon | 48665140 | 48665222 | 48665140 | ID=MS.gene89523.t1.exon1;Parent=MS.gene89523.t1 |
| chr5.4 | CDS | 48665140 | 48665222 | 48665140 | ID=cds.MS.gene89523.t1;Parent=MS.gene89523.t1 |
| chr5.4 | exon | 48665692 | 48665853 | 48665692 | ID=MS.gene89523.t1.exon2;Parent=MS.gene89523.t1 |
| chr5.4 | CDS | 48665692 | 48665853 | 48665692 | ID=cds.MS.gene89523.t1;Parent=MS.gene89523.t1 |
| chr5.4 | exon | 48666199 | 48666334 | 48666199 | ID=MS.gene89523.t1.exon3;Parent=MS.gene89523.t1 |
| chr5.4 | CDS | 48666199 | 48666334 | 48666199 | ID=cds.MS.gene89523.t1;Parent=MS.gene89523.t1 |
| chr5.4 | exon | 48667758 | 48667963 | 48667758 | ID=MS.gene89523.t1.exon4;Parent=MS.gene89523.t1 |
| chr5.4 | CDS | 48667758 | 48667963 | 48667758 | ID=cds.MS.gene89523.t1;Parent=MS.gene89523.t1 |
| chr5.4 | exon | 48669186 | 48669402 | 48669186 | ID=MS.gene89523.t1.exon5;Parent=MS.gene89523.t1 |
| chr5.4 | CDS | 48669186 | 48669402 | 48669186 | ID=cds.MS.gene89523.t1;Parent=MS.gene89523.t1 |
| Gene Sequence |
| Protein sequence |
