AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89585

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89585.t1 MTR_1g069765 99.283 279 2 0 1 279 1 279 0.0 567
MS.gene89585.t1 MTR_2g091185 43.017 179 92 3 5 180 18 189 2.25e-41 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89585.t1 AT1G03900 70.545 275 62 6 10 279 12 272 9.69e-119 341
MS.gene89585.t1 AT3G58600 43.575 179 85 4 5 177 27 195 7.45e-40 140

Find 87 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGGAAGCATGCGTTTAT+TGG 0.243287 1.1:-51708215 MS.gene89585:CDS
GCTGGCATGCTTTCAGCTGC+TGG 0.245848 1.1:-51707397 MS.gene89585:CDS
ATCGGATCTTTCTCAATTAC+AGG 0.250114 1.1:-51707182 MS.gene89585:intron
GGTCCTGTATCTAGTGTTAA+AGG 0.284346 1.1:-51707241 MS.gene89585:CDS
GGAGCAAGGTTCAATACTTT+TGG 0.310945 1.1:+51707343 None:intergenic
AAGCATGCGTTTATTGGATT+GGG 0.336786 1.1:-51708209 MS.gene89585:CDS
CACAAGGCGGCTGGTGGAGC+TGG 0.355323 1.1:-51707415 MS.gene89585:CDS
GCCGTGACCGGTGCGAGATC+CGG 0.369388 1.1:-51708361 MS.gene89585:CDS
GCGAAGAGATCACCGGAGTT+AGG 0.375730 1.1:+51708329 None:intergenic
GCTTTCAGCTGCTGGCCTAT+CGG 0.386640 1.1:-51707389 MS.gene89585:CDS
CTTTCAGCTGCTGGCCTATC+GGG 0.396419 1.1:-51707388 MS.gene89585:CDS
TCCCGGTCAGCGTGAGGGTT+CGG 0.398042 1.1:-51708291 MS.gene89585:CDS
CGAGCAGCAACCGGATCATT+TGG 0.402087 1.1:+51707277 None:intergenic
TTCATCCTGCTGTTAATCAT+AGG 0.414816 1.1:-51708061 MS.gene89585:CDS
TGCTGTTAATCATAGGCTTA+AGG 0.419472 1.1:-51708054 MS.gene89585:intron
AACCGAACCCTCACGCTGAC+CGG 0.428541 1.1:+51708289 None:intergenic
CTTCCCTCATCAGCCACTCC+TGG 0.429001 1.1:-51706743 MS.gene89585:CDS
GTCCCTTTAACACTAGATAC+AGG 0.431990 1.1:+51707238 None:intergenic
GAAGCATGCGTTTATTGGAT+TGG 0.436801 1.1:-51708210 MS.gene89585:CDS
GCGTGAGGGTTCGGTTGAAC+CGG 0.442496 1.1:-51708282 MS.gene89585:CDS
TGTGAGAAGAGAACATGATA+AGG 0.442504 1.1:-51708126 MS.gene89585:CDS
GGCTCCAATCAGACAAGATC+TGG 0.444379 1.1:-51708409 MS.gene89585:CDS
ATCCCGCCGCGAACAACCTC+CGG 0.448428 1.1:-51708452 MS.gene89585:CDS
TTTGTTCTGAAGATTGAAGA+TGG 0.449673 1.1:-51708239 MS.gene89585:CDS
CCTGGATCAACACCTGCATC+AGG 0.454323 1.1:-51706725 MS.gene89585:CDS
CGCCGGAGGTTGTTCGCGGC+GGG 0.458516 1.1:+51708450 None:intergenic
AGAGAACATGATAAGGAGTC+TGG 0.464167 1.1:-51708119 MS.gene89585:CDS
CCTGATGCAGGTGTTGATCC+AGG 0.466664 1.1:+51706725 None:intergenic
GAAGCAATCCGAGCAGCAAC+CGG 0.468103 1.1:+51707268 None:intergenic
ACCGGATCATTTGGTGGGAG+TGG 0.474405 1.1:+51707286 None:intergenic
GTGCTTGACATTAATCCTGA+TGG 0.479670 1.1:+51707435 None:intergenic
TCCACTCCCACCAAATGATC+CGG 0.488066 1.1:-51707287 MS.gene89585:CDS
CGGAGTTAGGATCTTCTAAC+CGG 0.488892 1.1:+51708342 None:intergenic
TAACCGCCGGAGGTTGTTCG+CGG 0.489732 1.1:+51708446 None:intergenic
GCGTCGTATCTCGCCGTGAC+CGG 0.490086 1.1:-51708373 MS.gene89585:CDS
TATCTCGACGAATCGAGAAC+CGG 0.491919 1.1:+51708263 None:intergenic
GTCCTGTATCTAGTGTTAAA+GGG 0.497916 1.1:-51707240 MS.gene89585:CDS
CGGACCAGATCTTGTCTGAT+TGG 0.500982 1.1:+51708405 None:intergenic
GTTTATTGGATTGGGGTTTG+CGG 0.504982 1.1:-51708201 MS.gene89585:CDS
CAATCAGACAAGATCTGGTC+CGG 0.507755 1.1:-51708404 MS.gene89585:CDS
AGTGTTAAAGGGACAAAAGA+AGG 0.515401 1.1:-51707229 MS.gene89585:CDS
ACCGGATCTCGCACCGGTCA+CGG 0.515952 1.1:+51708360 None:intergenic
AGATACGACGCGGAGACGGC+CGG 0.516487 1.1:+51708385 None:intergenic
AAGGCTGCCCATCCTGATGC+AGG 0.520170 1.1:+51706713 None:intergenic
GTCGTTAGAAGAAGAAGAAG+AGG 0.522046 1.1:-51708522 MS.gene89585:CDS
AATGTCAAGCACAAGGCGGC+TGG 0.531510 1.1:-51707424 MS.gene89585:CDS
ACCGAACCCTCACGCTGACC+GGG 0.532951 1.1:+51708290 None:intergenic
TGTAGGAGGGAGAAACCATC+AGG 0.535611 1.1:-51707450 MS.gene89585:intron
GTCAAGCACAAGGCGGCTGG+TGG 0.546548 1.1:-51707421 MS.gene89585:CDS
CAAATGATCCGGTTGCTGCT+CGG 0.548131 1.1:-51707276 MS.gene89585:CDS
CTGAAGATTGAAGATGGACA+AGG 0.551166 1.1:-51708233 MS.gene89585:CDS
GCTGCTCGGATTGCTTCTAC+CGG 0.551616 1.1:-51707262 MS.gene89585:CDS
AGCATGCGTTTATTGGATTG+GGG 0.552301 1.1:-51708208 MS.gene89585:CDS
TTCGCCGCATTTGTAACCGC+CGG 0.553188 1.1:+51708433 None:intergenic
ACAGTCTACTGATTCTCTAT+CGG 0.561613 1.1:-51707200 MS.gene89585:CDS
GATCAACACCTGCATCAGGA+TGG 0.567922 1.1:-51706721 MS.gene89585:CDS
TTGGATTGGGGTTTGCGGAG+AGG 0.569343 1.1:-51708196 MS.gene89585:CDS
ATCAACACCTGCATCAGGAT+GGG 0.573253 1.1:-51706720 MS.gene89585:CDS
CTTCTAACCGGATCTCGCAC+CGG 0.574822 1.1:+51708354 None:intergenic
CCGCCGGAGGTTGTTCGCGG+CGG 0.582317 1.1:+51708449 None:intergenic
GGCGAGATACGACGCGGAGA+CGG 0.582763 1.1:+51708381 None:intergenic
GCAGCAACCGGATCATTTGG+TGG 0.583616 1.1:+51707280 None:intergenic
GCGGTTACAAATGCGGCGAA+TGG 0.584085 1.1:-51708430 MS.gene89585:CDS
TTGCTACATGCACACCCGAT+AGG 0.586697 1.1:+51707374 None:intergenic
TCGCGGCGGGATCTTGTAGA+CGG 0.592219 1.1:+51708463 None:intergenic
GCCGCATTTGTAACCGCCGG+AGG 0.596884 1.1:+51708436 None:intergenic
TTAAGCCTATGATTAACAGC+AGG 0.600310 1.1:+51708056 None:intergenic
TGGCTGTATATATAATCAGA+AGG 0.603345 1.1:+51706694 None:intergenic
ACCTCCGGCGGTTACAAATG+CGG 0.604789 1.1:-51708437 MS.gene89585:CDS
TGATCCAGGAGTGGCTGATG+AGG 0.607039 1.1:+51706739 None:intergenic
GTCTGGTGATGCTGATGCCG+CGG 0.607238 1.1:-51708102 MS.gene89585:CDS
CGCGAACGACGAGGAGTGTG+TGG 0.610612 1.1:+51708492 None:intergenic
CAGCAACCGGATCATTTGGT+GGG 0.614621 1.1:+51707281 None:intergenic
CAGGATTAATGTCAAGCACA+AGG 0.616170 1.1:-51707431 MS.gene89585:CDS
CGGTTAGAAGATCCTAACTC+CGG 0.634275 1.1:-51708341 MS.gene89585:CDS
ACACGCAGCGAAGAGATCAC+CGG 0.637569 1.1:+51708322 None:intergenic
TTTAACACTAGATACAGGAC+CGG 0.645020 1.1:+51707243 None:intergenic
CGGCGACTTCGCGAACGACG+AGG 0.648082 1.1:+51708483 None:intergenic
ATTTGGTGGGAGTGGAAGAG+CGG 0.652140 1.1:+51707294 None:intergenic
TGCAGGTGTTGATCCAGGAG+TGG 0.652617 1.1:+51706730 None:intergenic
TGAAGATTGAAGATGGACAA+GGG 0.659170 1.1:-51708232 MS.gene89585:CDS
GATCCAGGAGTGGCTGATGA+GGG 0.665742 1.1:+51706740 None:intergenic
TGGTGATGCTGATGCCGCGG+AGG 0.679687 1.1:-51708099 MS.gene89585:CDS
CCGCCGCGAACAACCTCCGG+CGG 0.687466 1.1:-51708449 MS.gene89585:CDS
ATCGATCTGTGAATCCTCCG+CGG 0.729159 1.1:+51708085 None:intergenic
GATTAATGTCAAGCACAAGG+CGG 0.745005 1.1:-51707428 MS.gene89585:CDS
GGTCACGGCGAGATACGACG+CGG 0.826251 1.1:+51708375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATATAATTATGATCA+TGG - chr1.1:51707436-51707455 MS.gene89585:CDS 15.0%
!!! ATTAGTTTTTTGTGTATTTT+TGG - chr1.1:51707351-51707370 MS.gene89585:CDS 15.0%
!! ACAATATAGAGAAATTAAAC+TGG + chr1.1:51708404-51708423 None:intergenic 20.0%
!! TATATGCATAAACAAAGAAA+TGG + chr1.1:51708313-51708332 None:intergenic 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG + chr1.1:51707676-51707695 None:intergenic 20.0%
!!! TGAACTTTAATTTATTGTAG+CGG - chr1.1:51707255-51707274 MS.gene89585:CDS 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG + chr1.1:51707677-51707696 None:intergenic 20.0%
! AAAACCATGTTTACAAATCA+CGG - chr1.1:51707682-51707701 MS.gene89585:intron 25.0%
! ATTCATATTAAACAGTGTCT+GGG + chr1.1:51708433-51708452 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG - chr1.1:51708349-51708368 MS.gene89585:CDS 25.0%
!! ACAACCATGATTTAAAACAT+TGG + chr1.1:51707532-51707551 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG - chr1.1:51707531-51707550 MS.gene89585:intron 25.0%
!!! TTCTCCAATGTTTTAAATCA+TGG - chr1.1:51707525-51707544 MS.gene89585:intron 25.0%
AAATGAAGTGGAAATAGCTA+AGG + chr1.1:51708105-51708124 None:intergenic 30.0%
AGAACTTGCAAATTATTGCA+TGG - chr1.1:51708146-51708165 MS.gene89585:CDS 30.0%
AGCATAGCATAATCTTAGAT+AGG + chr1.1:51708246-51708265 None:intergenic 30.0%
AGTCACTATTGAGATTACAT+TGG + chr1.1:51707603-51707622 None:intergenic 30.0%
ATTTGGGCAAAAAATAACCT+CGG + chr1.1:51707470-51707489 None:intergenic 30.0%
CATAATCTTAGATAGGTACA+CGG + chr1.1:51708239-51708258 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG + chr1.1:51707493-51707512 None:intergenic 30.0%
GATTCATATTAAACAGTGTC+TGG + chr1.1:51708434-51708453 None:intergenic 30.0%
GATTGCAAAAACAAATGAAG+TGG + chr1.1:51708117-51708136 None:intergenic 30.0%
TCGACAAATACTTCAAACAT+AGG + chr1.1:51707757-51707776 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG - chr1.1:51707370-51707389 MS.gene89585:CDS 30.0%
! TGTTTGAAGTATTTGTCGAT+TGG - chr1.1:51707758-51707777 MS.gene89585:intron 30.0%
!! TGATCACACAAATTTGCTAA+TGG + chr1.1:51707211-51707230 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG - chr1.1:51706994-51707013 MS.gene89585:intron 30.0%
AAGCATGCGTTTATTGGATT+GGG - chr1.1:51707024-51707043 MS.gene89585:intron 35.0%
ACTACTCTAAACATCGGATT+TGG + chr1.1:51707487-51707506 None:intergenic 35.0%
AGTGTTAAAGGGACAAAAGA+AGG - chr1.1:51708004-51708023 MS.gene89585:intron 35.0%
ATCGGATCTTTCTCAATTAC+AGG - chr1.1:51708051-51708070 MS.gene89585:intron 35.0%
CTACTCTAAACATCGGATTT+GGG + chr1.1:51707486-51707505 None:intergenic 35.0%
CTTCAAACATAGGATAAGCA+AGG + chr1.1:51707747-51707766 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG - chr1.1:51707993-51708012 MS.gene89585:intron 35.0%
TAAAAAAGGGTTTGCGATCT+GGG + chr1.1:51707663-51707682 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG - chr1.1:51706712-51706731 MS.gene89585:CDS 35.0%
TGAAGATTGAAGATGGACAA+GGG - chr1.1:51707001-51707020 MS.gene89585:intron 35.0%
TGCTGTTAATCATAGGCTTA+AGG - chr1.1:51707179-51707198 MS.gene89585:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr1.1:51707107-51707126 MS.gene89585:intron 35.0%
TTAAAAAAGGGTTTGCGATC+TGG + chr1.1:51707664-51707683 None:intergenic 35.0%
TTAAGCCTATGATTAACAGC+AGG + chr1.1:51707180-51707199 None:intergenic 35.0%
TTCATCCTGCTGTTAATCAT+AGG - chr1.1:51707172-51707191 MS.gene89585:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG - chr1.1:51708151-51708170 MS.gene89585:CDS 35.0%
TTTAACACTAGATACAGGAC+CGG + chr1.1:51707993-51708012 None:intergenic 35.0%
TTTCTCAATTACAGGTATGC+TGG - chr1.1:51708059-51708078 MS.gene89585:CDS 35.0%
! AAGACCGTGATTTGTAAACA+TGG + chr1.1:51707689-51707708 None:intergenic 35.0%
! TTGCTATTGCAAATGATCGT+GGG - chr1.1:51707568-51707587 MS.gene89585:intron 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG - chr1.1:51708033-51708052 MS.gene89585:intron 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG + chr1.1:51707887-51707906 None:intergenic 35.0%
AGAGAACATGATAAGGAGTC+TGG - chr1.1:51707114-51707133 MS.gene89585:intron 40.0%
AGCATGCGTTTATTGGATTG+GGG - chr1.1:51707025-51707044 MS.gene89585:intron 40.0%
CAGGATTAATGTCAAGCACA+AGG - chr1.1:51707802-51707821 MS.gene89585:intron 40.0%
CTGAAGATTGAAGATGGACA+AGG - chr1.1:51707000-51707019 MS.gene89585:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG + chr1.1:51708385-51708404 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG - chr1.1:51708150-51708169 MS.gene89585:CDS 40.0%
GAAGCATGCGTTTATTGGAT+TGG - chr1.1:51707023-51707042 MS.gene89585:intron 40.0%
GATTAATGTCAAGCACAAGG+CGG - chr1.1:51707805-51707824 MS.gene89585:intron 40.0%
GGAAATAGCTAAGGCTCTTA+AGG + chr1.1:51708096-51708115 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG - chr1.1:51707992-51708011 MS.gene89585:intron 40.0%
GTCCCTTTAACACTAGATAC+AGG + chr1.1:51707998-51708017 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG - chr1.1:51706711-51706730 MS.gene89585:CDS 40.0%
GTGCTTGACATTAATCCTGA+TGG + chr1.1:51707801-51707820 None:intergenic 40.0%
! GGAGCAAGGTTCAATACTTT+TGG + chr1.1:51707893-51707912 None:intergenic 40.0%
! GTTGCTATTGCAAATGATCG+TGG - chr1.1:51707567-51707586 MS.gene89585:intron 40.0%
! GTTTATTGGATTGGGGTTTG+CGG - chr1.1:51707032-51707051 MS.gene89585:intron 40.0%
AAGGCTCTTAAGGAATGAGC+AGG + chr1.1:51708086-51708105 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG - chr1.1:51708513-51708532 MS.gene89585:CDS 45.0%
CAAATGATCGTGGGCAAATG+GGG - chr1.1:51707577-51707596 MS.gene89585:intron 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr1.1:51706829-51706848 MS.gene89585:intron 45.0%
CGGAGTTAGGATCTTCTAAC+CGG + chr1.1:51706894-51706913 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG - chr1.1:51706892-51706911 MS.gene89585:intron 45.0%
GCAAATGATCGTGGGCAAAT+GGG - chr1.1:51707576-51707595 MS.gene89585:intron 45.0%
TATCTCGACGAATCGAGAAC+CGG + chr1.1:51706973-51706992 None:intergenic 45.0%
TGATCATGGTGAATTGTCCG+AGG - chr1.1:51707450-51707469 MS.gene89585:intron 45.0%
TGCAAATGATCGTGGGCAAA+TGG - chr1.1:51707575-51707594 MS.gene89585:intron 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG - chr1.1:51707018-51707037 MS.gene89585:intron 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG - chr1.1:51707766-51707785 MS.gene89585:intron 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG - chr1.1:51706925-51706944 MS.gene89585:intron 45.0%
ATCGATCTGTGAATCCTCCG+CGG + chr1.1:51707151-51707170 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG - chr1.1:51707957-51707976 MS.gene89585:intron 50.0%
CAGCAACCGGATCATTTGGT+GGG + chr1.1:51707955-51707974 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG + chr1.1:51707649-51707668 None:intergenic 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr1.1:51706831-51706850 None:intergenic 50.0%
GATCAACACCTGCATCAGGA+TGG - chr1.1:51708512-51708531 MS.gene89585:CDS 50.0%
GGCTCCAATCAGACAAGATC+TGG - chr1.1:51706824-51706843 MS.gene89585:intron 50.0%
TCCACTCCCACCAAATGATC+CGG - chr1.1:51707946-51707965 MS.gene89585:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG + chr1.1:51707784-51707803 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG - chr1.1:51707783-51707802 MS.gene89585:intron 50.0%
TTGCTACATGCACACCCGAT+AGG + chr1.1:51707862-51707881 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG + chr1.1:51707942-51707961 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG + chr1.1:51707920-51707939 None:intergenic 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG - chr1.1:51707770-51707789 MS.gene89585:intron 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG - chr1.1:51707769-51707788 MS.gene89585:intron 50.0%
AATGTCAAGCACAAGGCGGC+TGG - chr1.1:51707809-51707828 MS.gene89585:intron 55.0%
ACACGCAGCGAAGAGATCAC+CGG + chr1.1:51706914-51706933 None:intergenic 55.0%
ACCTCCGGCGGTTACAAATG+CGG - chr1.1:51706796-51706815 MS.gene89585:intron 55.0%
ATTGAACCTTGCTCCCCCAC+CGG - chr1.1:51707898-51707917 MS.gene89585:intron 55.0%
CCTGGATCAACACCTGCATC+AGG - chr1.1:51708508-51708527 MS.gene89585:CDS 55.0%
CGAGCAGCAACCGGATCATT+TGG + chr1.1:51707959-51707978 None:intergenic 55.0%
CTTCTAACCGGATCTCGCAC+CGG + chr1.1:51706882-51706901 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG + chr1.1:51707968-51707987 None:intergenic 55.0%
GATCCAGGAGTGGCTGATGA+GGG + chr1.1:51708496-51708515 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG + chr1.1:51707956-51707975 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG + chr1.1:51706907-51706926 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG - chr1.1:51706803-51706822 MS.gene89585:intron 55.0%
GCTGCTCGGATTGCTTCTAC+CGG - chr1.1:51707971-51707990 MS.gene89585:intron 55.0%
TGATCCAGGAGTGGCTGATG+AGG + chr1.1:51708497-51708516 None:intergenic 55.0%
TTCGCCGCATTTGTAACCGC+CGG + chr1.1:51706803-51706822 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG + chr1.1:51707950-51707969 None:intergenic 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG - chr1.1:51707845-51707864 MS.gene89585:intron 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG - chr1.1:51707844-51707863 MS.gene89585:intron 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG - chr1.1:51706937-51706956 MS.gene89585:intron 55.0%
! TGATTTTCCCTGCACCCGGT+GGG + chr1.1:51707916-51707935 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG - chr1.1:51706936-51706955 MS.gene89585:intron 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG - chr1.1:51707037-51707056 MS.gene89585:intron 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG + chr1.1:51708511-51708530 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG + chr1.1:51708506-51708525 None:intergenic 55.0%
AACCGAACCCTCACGCTGAC+CGG + chr1.1:51706947-51706966 None:intergenic 60.0%
AAGGCTGCCCATCCTGATGC+AGG + chr1.1:51708523-51708542 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG - chr1.1:51708490-51708509 MS.gene89585:CDS 60.0%
GCTGGCATGCTTTCAGCTGC+TGG - chr1.1:51707836-51707855 MS.gene89585:intron 60.0%
TAACCGCCGGAGGTTGTTCG+CGG + chr1.1:51706790-51706809 None:intergenic 60.0%
TCGCGGCGGGATCTTGTAGA+CGG + chr1.1:51706773-51706792 None:intergenic 60.0%
TTGAACCTTGCTCCCCCACC+GGG - chr1.1:51707899-51707918 MS.gene89585:intron 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG + chr1.1:51707914-51707933 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG + chr1.1:51707917-51707936 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG + chr1.1:51707915-51707934 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG - chr1.1:51706951-51706970 MS.gene89585:intron 60.0%
! GTCTGGTGATGCTGATGCCG+CGG - chr1.1:51707131-51707150 MS.gene89585:intron 60.0%
ACCGAACCCTCACGCTGACC+GGG + chr1.1:51706946-51706965 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG + chr1.1:51706851-51706870 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG - chr1.1:51706781-51706800 MS.gene89585:intron 65.0%
GCCGCATTTGTAACCGCCGG+AGG + chr1.1:51706800-51706819 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG - chr1.1:51706860-51706879 MS.gene89585:intron 65.0%
GGCGAGATACGACGCGGAGA+CGG + chr1.1:51706855-51706874 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG + chr1.1:51706861-51706880 None:intergenic 65.0%
GTCAAGCACAAGGCGGCTGG+TGG - chr1.1:51707812-51707831 MS.gene89585:intron 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG - chr1.1:51706942-51706961 MS.gene89585:intron 65.0%
! ACCGGATCTCGCACCGGTCA+CGG + chr1.1:51706876-51706895 None:intergenic 65.0%
! CGCGAACGACGAGGAGTGTG+TGG + chr1.1:51706744-51706763 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG - chr1.1:51707134-51707153 MS.gene89585:intron 65.0%
CACAAGGCGGCTGGTGGAGC+TGG - chr1.1:51707818-51707837 MS.gene89585:intron 70.0%
CGGCGACTTCGCGAACGACG+AGG + chr1.1:51706753-51706772 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG - chr1.1:51706872-51706891 MS.gene89585:intron 70.0%
TTGCTCCCCCACCGGGTGCA+GGG - chr1.1:51707906-51707925 MS.gene89585:intron 70.0%
CCGCCGCGAACAACCTCCGG+CGG - chr1.1:51706784-51706803 MS.gene89585:intron 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG + chr1.1:51706787-51706806 None:intergenic 75.0%
CGCCGGAGGTTGTTCGCGGC+GGG + chr1.1:51706786-51706805 None:intergenic 75.0%
CTGCACCCGGTGGGGGAGCA+AGG + chr1.1:51707907-51707926 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG - chr1.1:51707905-51707924 MS.gene89585:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 51706709 51708546 51706709 ID=MS.gene89585
chr1.1 mRNA 51706709 51708546 51706709 ID=MS.gene89585.t1;Parent=MS.gene89585
chr1.1 exon 51708055 51708546 51708055 ID=MS.gene89585.t1.exon1;Parent=MS.gene89585.t1
chr1.1 CDS 51708055 51708546 51708055 ID=cds.MS.gene89585.t1;Parent=MS.gene89585.t1
chr1.1 exon 51707183 51707467 51707183 ID=MS.gene89585.t1.exon2;Parent=MS.gene89585.t1
chr1.1 CDS 51707183 51707467 51707183 ID=cds.MS.gene89585.t1;Parent=MS.gene89585.t1
chr1.1 exon 51706709 51706771 51706709 ID=MS.gene89585.t1.exon3;Parent=MS.gene89585.t1
chr1.1 CDS 51706709 51706771 51706709 ID=cds.MS.gene89585.t1;Parent=MS.gene89585.t1
Gene Sequence

>MS.gene89585

ATGTCGTTAGAAGAAGAAGAAGAGGGCTTCGACCACACACTCCTCGTCGTTCGCGAAGTCGCCGTCTACAAGATCCCGCCGCGAACAACCTCCGGCGGTTACAAATGCGGCGAATGGCTCCAATCAGACAAGATCTGGTCCGGCCGTCTCCGCGTCGTATCTCGCCGTGACCGGTGCGAGATCCGGTTAGAAGATCCTAACTCCGGTGATCTCTTCGCTGCGTGTTTTGTTTTTCCCGGTCAGCGTGAGGGTTCGGTTGAACCGGTTCTCGATTCGTCGAGATATTTTGTTCTGAAGATTGAAGATGGACAAGGGAAGCATGCGTTTATTGGATTGGGGTTTGCGGAGAGGAATGAAGCTTTTGATTTCAATGTTGCACTTTCTGATCATGAGAAGTATGTGAGAAGAGAACATGATAAGGAGTCTGGTGATGCTGATGCCGCGGAGGATTCACAGATCGATATTCATCCTGCTGTTAATCATAGGCTTAAGGTAGTTTCCATTAGCAAATTTGTGTGATCAATCTAATTCGCTTGATTATGCAGTTGAACTTTAATTTATTGTAGCGGTTATTGCTATTATGATGATTTGCTTACTATTTTCAGTTGAAAAATAGTTTATTTTTAGTATCATAAATGAAAGATTAGTTTTTTGTGTATTTTTGGTTAGTGTTAATTGTTGTGGATAAGTAGATCACTTAGATGCTTGTGTTATGATTACAATTGCTTTATGATATAATTATGATCATGGTGAATTGTCCGAGGTTATTTTTTGCCCAAATCCGATGTTTAGAGTAGTTTCTAGTTGTGTTTATGTTTCTCCAATGTTTTAAATCATGGTTGTGGTCGCATCATGATTGTTGCTATTGCAAATGATCGTGGGCAAATGGGGCCAATGTAATCTCAATAGTGACTGCAGAGACATCATATTTCATAAACCTTGATGTTGCAACCCAGATCGCAAACCCTTTTTTAAAACCATGTTTACAAATCACGGTCTTCTCTTAACAGTGTTTTTATATTTCTCGTTGTGAATCCTTGCTTATCCTATGTTTGAAGTATTTGTCGATTGGCCTGTAGGAGGGAGAAACCATCAGGATTAATGTCAAGCACAAGGCGGCTGGTGGAGCTGGCATGCTTTCAGCTGCTGGCCTATCGGGTGTGCATGTAGCAACACCGAAGCCAAAAGTATTGAACCTTGCTCCCCCACCGGGTGCAGGGAAAATCAGATCCGCTCTTCCACTCCCACCAAATGATCCGGTTGCTGCTCGGATTGCTTCTACCGGTCCTGTATCTAGTGTTAAAGGGACAAAAGAAGGTGTGAAACAGTCTACTGATTCTCTATCGGATCTTTCTCAATTACAGGTATGCTGGTCCTGCTCATTCCTTAAGAGCCTTAGCTATTTCCACTTCATTTGTTTTTGCAATCAAATGTTTTAGAACTTGCAAATTATTGCATGGCTGGGCAACTACATTGTTTCTTTTAGACAGATTGAAGATTATTCTGCTAAATTTTATTTTGAAGATTCCGTGTACCTATCTAAGATTATGCTATGCTGCTAATTAAGTAACAGTCAACACTGAATAGCAAGAATACTAACTCCATTTCTTTGTTTATGCATATAAAATGACTGTTCTGATTTGTAAAACAACAGTTACATTGGTTATGCATATCCGTGATCATGTTACTTTGCCAGTTTAATTTCTCTATATTGTTGTAGTCCCAGACACTGTTTAATATGAATCATTTGTAACATTTCATGCTTGCATTTACAGAAAAATCTTCCCTCATCAGCCACTCCTGGATCAACACCTGCATCAGGATGGGCAGCCTTCTGA
Protein sequence

>MS.gene89585.t1

MSLEEEEEGFDHTLLVVREVAVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGDADAAEDSQIDIHPAVNHRLKEGETIRINVKHKAAGGAGMLSAAGLSGVHVATPKPKVLNLAPPPGAGKIRSALPLPPNDPVAARIASTGPVSSVKGTKEGVKQSTDSLSDLSQLQKNLPSSATPGSTPASGWAAF