Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89645.t1 | XP_003629342.2 | 83.2 | 517 | 79 | 1 | 1 | 517 | 49 | 557 | 5.50E-200 | 707.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89645.t1 | Q56XU4 | 26.5 | 528 | 195 | 11 | 11 | 516 | 53 | 409 | 1.7e-32 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89645.t1 | G7LCY7 | 83.2 | 517 | 79 | 1 | 1 | 517 | 49 | 557 | 4.0e-200 | 707.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89645.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene89645 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene057127 | MS.gene89645 | 0.813347 | 2.68E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89645.t1 | MTR_8g076080 | 95.164 | 517 | 17 | 1 | 1 | 517 | 49 | 557 | 0.0 | 990 |
| MS.gene89645.t1 | MTR_1g019120 | 35.426 | 223 | 101 | 4 | 12 | 229 | 60 | 244 | 2.62e-29 | 120 |
| MS.gene89645.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 421 | 517 | 307 | 406 | 8.51e-18 | 85.9 |
| MS.gene89645.t1 | MTR_1g019120 | 45.000 | 100 | 52 | 2 | 421 | 517 | 192 | 291 | 2.64e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89645.t1 | AT5G66270 | 30.382 | 497 | 232 | 16 | 11 | 498 | 36 | 427 | 5.61e-42 | 156 |
| MS.gene89645.t1 | AT3G51180 | 29.550 | 511 | 267 | 14 | 11 | 496 | 53 | 495 | 1.85e-40 | 153 |
| MS.gene89645.t1 | AT1G19860 | 38.462 | 221 | 96 | 6 | 11 | 224 | 55 | 242 | 4.05e-36 | 139 |
| MS.gene89645.t1 | AT1G19860 | 36.184 | 152 | 76 | 7 | 386 | 517 | 262 | 412 | 2.16e-15 | 78.6 |
| MS.gene89645.t1 | AT1G19860 | 38.462 | 221 | 96 | 6 | 11 | 224 | 53 | 240 | 5.83e-36 | 139 |
| MS.gene89645.t1 | AT1G19860 | 36.184 | 152 | 76 | 7 | 386 | 517 | 260 | 410 | 2.68e-15 | 78.6 |
Find 138 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACATTCCTAAGATAAAA+TGG | 0.151328 | 8.3:+27785796 | MS.gene89645:CDS |
| GCCTCAGCCAGATTCATTTC+TGG | 0.195716 | 8.3:+27787034 | MS.gene89645:CDS |
| CCAGATTCATTTCTGGCATC+TGG | 0.226020 | 8.3:+27787041 | MS.gene89645:CDS |
| ATGTAGCCCTTCTGTTTCTT+TGG | 0.231921 | 8.3:+27786197 | MS.gene89645:intron |
| TCCATGGTTACACTCACTTC+TGG | 0.273989 | 8.3:+27786642 | MS.gene89645:CDS |
| CACTCGATGTGGCAGCTTCT+AGG | 0.275678 | 8.3:+27786706 | MS.gene89645:CDS |
| AGTTTGTGTTCAGTCCTAAT+TGG | 0.311809 | 8.3:+27785994 | MS.gene89645:intron |
| ACAGTTCCATTGCCTCCTTC+TGG | 0.313266 | 8.3:+27787110 | MS.gene89645:CDS |
| CCAGCTGCAACTAGCCAATT+AGG | 0.324873 | 8.3:-27786008 | None:intergenic |
| GATGAAACTGATGGAATTGC+AGG | 0.327045 | 8.3:-27786768 | None:intergenic |
| AGGAGGAATGGCAGAGGGTC+GGG | 0.328507 | 8.3:-27786096 | None:intergenic |
| TATGTGCCAATTTCATATCT+TGG | 0.331995 | 8.3:-27787313 | None:intergenic |
| TTCACTGCTGCTGCTAATTT+AGG | 0.340907 | 8.3:-27786306 | None:intergenic |
| TAACTTCCAAGATATGAAAT+TGG | 0.355285 | 8.3:+27787307 | MS.gene89645:CDS |
| AACGGAGCTGACGCAGTTGC+TGG | 0.366958 | 8.3:-27786876 | None:intergenic |
| AAGCCTTATCAAACAAGTTC+AGG | 0.368435 | 8.3:+27787179 | MS.gene89645:CDS |
| GGAATTACGGTCTGAACTAT+TGG | 0.371884 | 8.3:-27786385 | None:intergenic |
| TCCTCCTCGATGGGAATGAT+TGG | 0.373518 | 8.3:-27786264 | None:intergenic |
| AGCAGGGGTATCTTCTAGTT+TGG | 0.377653 | 8.3:+27786446 | MS.gene89645:CDS |
| AATTGAACCTTTGATTGGTT+AGG | 0.381590 | 8.3:-27785771 | None:intergenic |
| GATATTGGTTTACTGGATAC+TGG | 0.382154 | 8.3:-27786906 | None:intergenic |
| ATTGAATACGATGGAATTGC+AGG | 0.387770 | 8.3:-27786831 | None:intergenic |
| AAAATTATTGTTGACAGGTC+TGG | 0.391698 | 8.3:-27786973 | None:intergenic |
| CAGATTCATTTCTGGCATCT+GGG | 0.392898 | 8.3:+27787042 | MS.gene89645:CDS |
| TCATCTTTCAATCCTACATC+TGG | 0.397689 | 8.3:+27786786 | MS.gene89645:CDS |
| GCAAGCAGGCTTAATTGATA+TGG | 0.398979 | 8.3:+27786524 | MS.gene89645:CDS |
| ATTGAACCTTTGATTGGTTA+GGG | 0.402352 | 8.3:-27785770 | None:intergenic |
| GATACGCTGGACTCACAAAT+AGG | 0.406896 | 8.3:+27787272 | MS.gene89645:CDS |
| AAATTATTGTTGACAGGTCT+GGG | 0.408470 | 8.3:-27786972 | None:intergenic |
| GAATCTATCGATTTACCTCC+TGG | 0.411481 | 8.3:+27785729 | MS.gene89645:CDS |
| CAGTTCCATTGCCTCCTTCT+GGG | 0.414655 | 8.3:+27787111 | MS.gene89645:CDS |
| CTGCGTCAGCTCCGTTGTCT+AGG | 0.426631 | 8.3:+27786883 | MS.gene89645:CDS |
| GCTCGTCTAATGCCCTTAGC+AGG | 0.429377 | 8.3:+27786429 | MS.gene89645:CDS |
| GCTGAAACATCATGCTGAAA+GGG | 0.429786 | 8.3:-27787425 | None:intergenic |
| GAACTATTGGAAGTTGTTGC+CGG | 0.432083 | 8.3:-27786372 | None:intergenic |
| GCAGGAGCAAACAGAGTAGT+TGG | 0.444997 | 8.3:-27786813 | None:intergenic |
| CCTAATTGGCTAGTTGCAGC+TGG | 0.446302 | 8.3:+27786008 | MS.gene89645:CDS |
| GAACCTGAACTTGTTTGATA+AGG | 0.453047 | 8.3:-27787182 | None:intergenic |
| CTGCACCATGTTGCCTAATG+AGG | 0.454748 | 8.3:-27787241 | None:intergenic |
| TCGGGAGCTGGTAACTTCCT+AGG | 0.455316 | 8.3:+27787452 | MS.gene89645:CDS |
| CCAGATGCCAGAAATGAATC+TGG | 0.461127 | 8.3:-27787041 | None:intergenic |
| TGCAGCTGGGCAAGAAAGTA+GGG | 0.463524 | 8.3:+27786022 | MS.gene89645:CDS |
| TTGACAGGTCTGGGCATATG+AGG | 0.463719 | 8.3:-27786963 | None:intergenic |
| TTGCAGCTGGGCAAGAAAGT+AGG | 0.464157 | 8.3:+27786021 | MS.gene89645:CDS |
| TTGGCACATAACAATAATCA+AGG | 0.464527 | 8.3:+27787326 | MS.gene89645:CDS |
| AAATTCTGTGGCTGAACATT+GGG | 0.466364 | 8.3:-27786336 | None:intergenic |
| TAAGGCTTTGTACTAGCAAT+GGG | 0.468145 | 8.3:-27787164 | None:intergenic |
| CCACATTCCTAAGATAAAAT+GGG | 0.468472 | 8.3:+27785797 | MS.gene89645:CDS |
| CCTCCTCGATGGGAATGATT+GGG | 0.470351 | 8.3:-27786263 | None:intergenic |
| GGAGGAATGGCAGAGGGTCG+GGG | 0.470549 | 8.3:-27786095 | None:intergenic |
| ATCATGCTGAAAGGGGCAAT+CGG | 0.471157 | 8.3:-27787417 | None:intergenic |
| CGGGAGCTGGTAACTTCCTA+GGG | 0.483524 | 8.3:+27787453 | MS.gene89645:CDS |
| AGGTTCAGCATCTGCTGTAA+AGG | 0.486010 | 8.3:+27787199 | MS.gene89645:CDS |
| ATTAGGCAACATGGTGCAGA+TGG | 0.486112 | 8.3:+27787245 | MS.gene89645:CDS |
| CATGATGTTTCAGCTGAGTC+GGG | 0.488953 | 8.3:+27787434 | MS.gene89645:CDS |
| GGGAGAATTGAACCTTTGAT+TGG | 0.489898 | 8.3:-27785776 | None:intergenic |
| ATAAGGCTTTGTACTAGCAA+TGG | 0.495719 | 8.3:-27787165 | None:intergenic |
| GAGTGTAACCATGGAATTTG+AGG | 0.498728 | 8.3:-27786634 | None:intergenic |
| GCATGATGTTTCAGCTGAGT+CGG | 0.505056 | 8.3:+27787433 | MS.gene89645:CDS |
| AGCTGAAACATCATGCTGAA+AGG | 0.506833 | 8.3:-27787426 | None:intergenic |
| AGCTGCAGCCTCTGAAGTTG+TGG | 0.508132 | 8.3:+27786479 | MS.gene89645:CDS |
| GGCATATGAGGTTCAGATGT+AGG | 0.520582 | 8.3:-27786951 | None:intergenic |
| CATAGACTCTTCCTCCTCGA+TGG | 0.531139 | 8.3:-27786274 | None:intergenic |
| CAGCAGAAAATTACCGGGAG+AGG | 0.533061 | 8.3:-27785825 | None:intergenic |
| ATGTGAAAATTATTGTTGAC+AGG | 0.534240 | 8.3:-27786978 | None:intergenic |
| CAAATTCTGTGGCTGAACAT+TGG | 0.535118 | 8.3:-27786337 | None:intergenic |
| GTTTCAGCTGAGTCGGGAGC+TGG | 0.537366 | 8.3:+27787440 | MS.gene89645:CDS |
| TAGGAGGAATGGCAGAGGGT+CGG | 0.538274 | 8.3:-27786097 | None:intergenic |
| TGCAGATGGGCAAGATACGC+TGG | 0.538610 | 8.3:+27787259 | MS.gene89645:CDS |
| GGACGAACTTGCAGTGGTGG+CGG | 0.542355 | 8.3:-27786613 | None:intergenic |
| TGTTTCTTTGGATGTAGAAG+AGG | 0.545703 | 8.3:+27786209 | MS.gene89645:CDS |
| GCAAGAAAGTAGGGAGAAAG+AGG | 0.547738 | 8.3:+27786031 | MS.gene89645:CDS |
| GAGCATCTGAGGAGACAGTA+CGG | 0.548380 | 8.3:-27786410 | None:intergenic |
| TGAGGACGAACTTGCAGTGG+TGG | 0.548748 | 8.3:-27786616 | None:intergenic |
| ACTAGAAGATACCCCTGCTA+AGG | 0.549081 | 8.3:-27786442 | None:intergenic |
| GAGAATTTGATCAATGAGCA+TGG | 0.549452 | 8.3:+27786585 | MS.gene89645:CDS |
| AAAATGGGAATGCCCTCTCC+CGG | 0.549517 | 8.3:+27785812 | MS.gene89645:CDS |
| AGCATCTGAGGAGACAGTAC+GGG | 0.553864 | 8.3:-27786409 | None:intergenic |
| TCTACATCCAAAGAAACAGA+AGG | 0.555893 | 8.3:-27786204 | None:intergenic |
| GTAGTTGGCTTACCAGATGT+AGG | 0.556554 | 8.3:-27786798 | None:intergenic |
| AGCAGAAAATTACCGGGAGA+GGG | 0.557952 | 8.3:-27785824 | None:intergenic |
| GACCCTCTGCCATTCCTCCT+AGG | 0.562137 | 8.3:+27786099 | MS.gene89645:CDS |
| CTCGTCTAATGCCCTTAGCA+GGG | 0.566088 | 8.3:+27786430 | MS.gene89645:CDS |
| GCATTTACTTTAATAGCTCG+AGG | 0.566113 | 8.3:+27787378 | MS.gene89645:CDS |
| AAGTTCGTCCTCAAATTCCA+TGG | 0.568579 | 8.3:+27786626 | MS.gene89645:CDS |
| TTACCTCCTGGGTTCGAAAG+CGG | 0.570253 | 8.3:+27785741 | MS.gene89645:CDS |
| CATTTACTTTAATAGCTCGA+GGG | 0.571255 | 8.3:+27787379 | MS.gene89645:CDS |
| CTAGAAGATACCCCTGCTAA+GGG | 0.572585 | 8.3:-27786441 | None:intergenic |
| AACTCACACAGTAGTTCTGT+GGG | 0.572595 | 8.3:+27786729 | MS.gene89645:CDS |
| ATAGACTCTTCCTCCTCGAT+GGG | 0.574122 | 8.3:-27786273 | None:intergenic |
| AATCTATCGATTTACCTCCT+GGG | 0.575153 | 8.3:+27785730 | MS.gene89645:CDS |
| GATGTAAACAAAGGAACTGA+AGG | 0.576142 | 8.3:-27786681 | None:intergenic |
| GAACTCACACAGTAGTTCTG+TGG | 0.577379 | 8.3:+27786728 | MS.gene89645:CDS |
| AAATGACCGCTTTCGAACCC+AGG | 0.580431 | 8.3:-27785747 | None:intergenic |
| AGATTCATTTCTGGCATCTG+GGG | 0.584140 | 8.3:+27787043 | MS.gene89645:CDS |
| GGGCATTAGACGAGCATCTG+AGG | 0.586309 | 8.3:-27786421 | None:intergenic |
| TCATTTCCCTAACCAATCAA+AGG | 0.586642 | 8.3:+27785764 | MS.gene89645:CDS |
| TTGCTCATTACTCTTCAAGA+TGG | 0.588692 | 8.3:-27786505 | None:intergenic |
| GATGGCCGCCACAACTTCAG+AGG | 0.592308 | 8.3:-27786487 | None:intergenic |
| TATCTTGGAAGTTACTATGA+CGG | 0.596611 | 8.3:-27787298 | None:intergenic |
| GCCAGAAATGAATCTGGCTG+AGG | 0.596965 | 8.3:-27787035 | None:intergenic |
| TGCAGCCTCTGAAGTTGTGG+CGG | 0.606081 | 8.3:+27786482 | MS.gene89645:CDS |
| CTGAAACATCATGCTGAAAG+GGG | 0.608148 | 8.3:-27787424 | None:intergenic |
| TCCAGAAGTGAGTGTAACCA+TGG | 0.609657 | 8.3:-27786643 | None:intergenic |
| CTAATTGGCTAGTTGCAGCT+GGG | 0.611160 | 8.3:+27786009 | MS.gene89645:CDS |
| TACCTAGGAGGAATGGCAGA+GGG | 0.611350 | 8.3:-27786101 | None:intergenic |
| TTGAAGAGTAATGAGCAAGC+AGG | 0.612567 | 8.3:+27786510 | MS.gene89645:CDS |
| TGGCACATAACAATAATCAA+GGG | 0.613321 | 8.3:+27787327 | MS.gene89645:CDS |
| ATGGGAATGATTGGGATGAG+AGG | 0.616809 | 8.3:-27786255 | None:intergenic |
| GTATGTAATGCAGTTGACAT+TGG | 0.617784 | 8.3:-27787008 | None:intergenic |
| GAATTTGCATCAATACATGC+CGG | 0.618887 | 8.3:+27786353 | MS.gene89645:CDS |
| AAGTTCCCAGAAGGAGGCAA+TGG | 0.626716 | 8.3:-27787116 | None:intergenic |
| ACAGTATGCAAGTTCCCAGA+AGG | 0.630858 | 8.3:-27787125 | None:intergenic |
| GTATGCAAGTTCCCAGAAGG+AGG | 0.631112 | 8.3:-27787122 | None:intergenic |
| TTAGGCAACATGGTGCAGAT+GGG | 0.631526 | 8.3:+27787246 | MS.gene89645:CDS |
| GCATCTGAGGAGACAGTACG+GGG | 0.632228 | 8.3:-27786408 | None:intergenic |
| TTACCTAGGAGGAATGGCAG+AGG | 0.641048 | 8.3:-27786102 | None:intergenic |
| GGCACATAACAATAATCAAG+GGG | 0.641216 | 8.3:+27787328 | MS.gene89645:CDS |
| ATGAGGTTCAGATGTAGGTG+TGG | 0.647403 | 8.3:-27786946 | None:intergenic |
| CTGGATACTGGCCTAGACAA+CGG | 0.651090 | 8.3:-27786894 | None:intergenic |
| TCGTCTAATGCCCTTAGCAG+GGG | 0.652307 | 8.3:+27786431 | MS.gene89645:CDS |
| CTACATCCAAAGAAACAGAA+GGG | 0.654763 | 8.3:-27786203 | None:intergenic |
| ATTTACTTTAATAGCTCGAG+GGG | 0.658318 | 8.3:+27787380 | MS.gene89645:CDS |
| ATCTGAGGAGACAGTACGGG+GGG | 0.661328 | 8.3:-27786406 | None:intergenic |
| GAAGACACGATTGAATACGA+TGG | 0.663763 | 8.3:-27786840 | None:intergenic |
| GAGCTGGTAACTTCCTAGGG+GGG | 0.673031 | 8.3:+27787456 | MS.gene89645:CDS |
| CCCAATCATTCCCATCGAGG+AGG | 0.674658 | 8.3:+27786263 | MS.gene89645:CDS |
| ATTTGAGGACGAACTTGCAG+TGG | 0.676325 | 8.3:-27786619 | None:intergenic |
| GGATTGAAAGATGAAACTGA+TGG | 0.677966 | 8.3:-27786777 | None:intergenic |
| GGAGCTGGTAACTTCCTAGG+GGG | 0.677996 | 8.3:+27787455 | MS.gene89645:CDS |
| ATGTATTGATGCAAATTCTG+TGG | 0.682900 | 8.3:-27786348 | None:intergenic |
| TCGAGTGTAGATGTAAACAA+AGG | 0.685704 | 8.3:-27786690 | None:intergenic |
| GTTTACATCTACACTCGATG+TGG | 0.686261 | 8.3:+27786695 | MS.gene89645:CDS |
| CATCCCAATCATTCCCATCG+AGG | 0.693777 | 8.3:+27786260 | MS.gene89645:CDS |
| GGGAGCTGGTAACTTCCTAG+GGG | 0.705156 | 8.3:+27787454 | MS.gene89645:CDS |
| TTTACTTTAATAGCTCGAGG+GGG | 0.714437 | 8.3:+27787381 | MS.gene89645:CDS |
| TGACCGCTTTCGAACCCAGG+AGG | 0.723419 | 8.3:-27785744 | None:intergenic |
| CATCTGAGGAGACAGTACGG+GGG | 0.770239 | 8.3:-27786407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACATATTGCTAACAAA+GGG | - | chr8.3:27785868-27785887 | None:intergenic | 20.0% |
| !! | ACTATTATAAAAACCTCATT+AGG | + | chr8.3:27787228-27787247 | MS.gene89645:CDS | 20.0% |
| !!! | AAATATTCAACATTTTACCT+AGG | - | chr8.3:27786119-27786138 | None:intergenic | 20.0% |
| !!! | ATCAAATTCTCAATCATTTT+TGG | - | chr8.3:27786576-27786595 | None:intergenic | 20.0% |
| !!! | TCAAATTCTCAATCATTTTT+GGG | - | chr8.3:27786575-27786594 | None:intergenic | 20.0% |
| ! | ATGTGAAAATTATTGTTGAC+AGG | - | chr8.3:27786981-27787000 | None:intergenic | 25.0% |
| ! | GAAATACATATTGCTAACAA+AGG | - | chr8.3:27785869-27785888 | None:intergenic | 25.0% |
| ! | TAACTTCCAAGATATGAAAT+TGG | + | chr8.3:27787307-27787326 | MS.gene89645:CDS | 25.0% |
| AAAATTATTGTTGACAGGTC+TGG | - | chr8.3:27786976-27786995 | None:intergenic | 30.0% | |
| AAATTATTGTTGACAGGTCT+GGG | - | chr8.3:27786975-27786994 | None:intergenic | 30.0% | |
| ACAGAAAATGAAACAACACA+AGG | - | chr8.3:27786149-27786168 | None:intergenic | 30.0% | |
| ATTTACTTTAATAGCTCGAG+GGG | + | chr8.3:27787380-27787399 | MS.gene89645:CDS | 30.0% | |
| CATTTACTTTAATAGCTCGA+GGG | + | chr8.3:27787379-27787398 | MS.gene89645:CDS | 30.0% | |
| CCACATTCCTAAGATAAAAT+GGG | + | chr8.3:27785797-27785816 | MS.gene89645:CDS | 30.0% | |
| TATCTTGGAAGTTACTATGA+CGG | - | chr8.3:27787301-27787320 | None:intergenic | 30.0% | |
| TATGTGCCAATTTCATATCT+TGG | - | chr8.3:27787316-27787335 | None:intergenic | 30.0% | |
| TGGCACATAACAATAATCAA+GGG | + | chr8.3:27787327-27787346 | MS.gene89645:CDS | 30.0% | |
| TTGGCACATAACAATAATCA+AGG | + | chr8.3:27787326-27787345 | MS.gene89645:CDS | 30.0% | |
| ! | AATTGAACCTTTGATTGGTT+AGG | - | chr8.3:27785774-27785793 | None:intergenic | 30.0% |
| ! | ATGTATTGATGCAAATTCTG+TGG | - | chr8.3:27786351-27786370 | None:intergenic | 30.0% |
| ! | ATTGAACCTTTGATTGGTTA+GGG | - | chr8.3:27785773-27785792 | None:intergenic | 30.0% |
| ! | CCATTTTATCTTAGGAATGT+GGG | - | chr8.3:27785799-27785818 | None:intergenic | 30.0% |
| ! | TATTCAACATTTTACCTAGG+AGG | - | chr8.3:27786116-27786135 | None:intergenic | 30.0% |
| AAAAACCTCATTAGGCAACA+TGG | + | chr8.3:27787236-27787255 | MS.gene89645:CDS | 35.0% | |
| AAATTCTGTGGCTGAACATT+GGG | - | chr8.3:27786339-27786358 | None:intergenic | 35.0% | |
| AACAAGCAGCAGAAAATTAC+CGG | - | chr8.3:27785834-27785853 | None:intergenic | 35.0% | |
| AGTTTGTGTTCAGTCCTAAT+TGG | + | chr8.3:27785994-27786013 | MS.gene89645:intron | 35.0% | |
| ATAAAAACAGAGGGGGATAT+TGG | - | chr8.3:27786924-27786943 | None:intergenic | 35.0% | |
| ATATTGCTAACAAAGGGTTG+TGG | - | chr8.3:27785862-27785881 | None:intergenic | 35.0% | |
| ATTGAATACGATGGAATTGC+AGG | - | chr8.3:27786834-27786853 | None:intergenic | 35.0% | |
| CATACTCTGCTTTCTTTAAC+TGG | + | chr8.3:27785922-27785941 | MS.gene89645:intron | 35.0% | |
| CCCACATTCCTAAGATAAAA+TGG | + | chr8.3:27785796-27785815 | MS.gene89645:CDS | 35.0% | |
| CTACATCCAAAGAAACAGAA+GGG | - | chr8.3:27786206-27786225 | None:intergenic | 35.0% | |
| GAATTTGCATCAATACATGC+CGG | + | chr8.3:27786353-27786372 | MS.gene89645:CDS | 35.0% | |
| GAGAATTTGATCAATGAGCA+TGG | + | chr8.3:27786585-27786604 | MS.gene89645:CDS | 35.0% | |
| GATGTAAACAAAGGAACTGA+AGG | - | chr8.3:27786684-27786703 | None:intergenic | 35.0% | |
| GCATTTACTTTAATAGCTCG+AGG | + | chr8.3:27787378-27787397 | MS.gene89645:CDS | 35.0% | |
| GGATTGAAAGATGAAACTGA+TGG | - | chr8.3:27786780-27786799 | None:intergenic | 35.0% | |
| GGCACATAACAATAATCAAG+GGG | + | chr8.3:27787328-27787347 | MS.gene89645:CDS | 35.0% | |
| GTATGTAATGCAGTTGACAT+TGG | - | chr8.3:27787011-27787030 | None:intergenic | 35.0% | |
| TCATCTTTCAATCCTACATC+TGG | + | chr8.3:27786786-27786805 | MS.gene89645:CDS | 35.0% | |
| TCATTTCCCTAACCAATCAA+AGG | + | chr8.3:27785764-27785783 | MS.gene89645:CDS | 35.0% | |
| TCGAGTGTAGATGTAAACAA+AGG | - | chr8.3:27786693-27786712 | None:intergenic | 35.0% | |
| TCTACATCCAAAGAAACAGA+AGG | - | chr8.3:27786207-27786226 | None:intergenic | 35.0% | |
| TGTTTCTTTGGATGTAGAAG+AGG | + | chr8.3:27786209-27786228 | MS.gene89645:CDS | 35.0% | |
| TTGCTCATTACTCTTCAAGA+TGG | - | chr8.3:27786508-27786527 | None:intergenic | 35.0% | |
| TTTACTTTAATAGCTCGAGG+GGG | + | chr8.3:27787381-27787400 | MS.gene89645:CDS | 35.0% | |
| ! | AACATTTTACCTAGGAGGAA+TGG | - | chr8.3:27786111-27786130 | None:intergenic | 35.0% |
| ! | AAGCCTTATCAAACAAGTTC+AGG | + | chr8.3:27787179-27787198 | MS.gene89645:CDS | 35.0% |
| ! | ATAAGGCTTTGTACTAGCAA+TGG | - | chr8.3:27787168-27787187 | None:intergenic | 35.0% |
| ! | CCCATTTTATCTTAGGAATG+TGG | - | chr8.3:27785800-27785819 | None:intergenic | 35.0% |
| ! | GAACCTGAACTTGTTTGATA+AGG | - | chr8.3:27787185-27787204 | None:intergenic | 35.0% |
| ! | TAAGGCTTTGTACTAGCAAT+GGG | - | chr8.3:27787167-27787186 | None:intergenic | 35.0% |
| !! | AACATTGTTGACTTGCGTTT+GGG | + | chr8.3:27786173-27786192 | MS.gene89645:intron | 35.0% |
| !! | AATCTATCGATTTACCTCCT+GGG | + | chr8.3:27785730-27785749 | MS.gene89645:CDS | 35.0% |
| !! | GATATTGGTTTACTGGATAC+TGG | - | chr8.3:27786909-27786928 | None:intergenic | 35.0% |
| !! | TAACATTGTTGACTTGCGTT+TGG | + | chr8.3:27786172-27786191 | MS.gene89645:intron | 35.0% |
| AAGTTCGTCCTCAAATTCCA+TGG | + | chr8.3:27786626-27786645 | MS.gene89645:CDS | 40.0% | |
| ACAAGCAGCAGAAAATTACC+GGG | - | chr8.3:27785833-27785852 | None:intergenic | 40.0% | |
| AGCTGAAACATCATGCTGAA+AGG | - | chr8.3:27787429-27787448 | None:intergenic | 40.0% | |
| AGGTGTGGACATAAAAACAG+AGG | - | chr8.3:27786934-27786953 | None:intergenic | 40.0% | |
| CAAATTCTGTGGCTGAACAT+TGG | - | chr8.3:27786340-27786359 | None:intergenic | 40.0% | |
| CTGAAACATCATGCTGAAAG+GGG | - | chr8.3:27787427-27787446 | None:intergenic | 40.0% | |
| GAACTATTGGAAGTTGTTGC+CGG | - | chr8.3:27786375-27786394 | None:intergenic | 40.0% | |
| GAAGACACGATTGAATACGA+TGG | - | chr8.3:27786843-27786862 | None:intergenic | 40.0% | |
| GAGTGTAACCATGGAATTTG+AGG | - | chr8.3:27786637-27786656 | None:intergenic | 40.0% | |
| GATGAAACTGATGGAATTGC+AGG | - | chr8.3:27786771-27786790 | None:intergenic | 40.0% | |
| GCAAGCAGGCTTAATTGATA+TGG | + | chr8.3:27786524-27786543 | MS.gene89645:CDS | 40.0% | |
| GCTGAAACATCATGCTGAAA+GGG | - | chr8.3:27787428-27787447 | None:intergenic | 40.0% | |
| GGAATTACGGTCTGAACTAT+TGG | - | chr8.3:27786388-27786407 | None:intergenic | 40.0% | |
| GGGAGAATTGAACCTTTGAT+TGG | - | chr8.3:27785779-27785798 | None:intergenic | 40.0% | |
| GGTGTGGACATAAAAACAGA+GGG | - | chr8.3:27786933-27786952 | None:intergenic | 40.0% | |
| GTGTGGACATAAAAACAGAG+GGG | - | chr8.3:27786932-27786951 | None:intergenic | 40.0% | |
| GTTTACATCTACACTCGATG+TGG | + | chr8.3:27786695-27786714 | MS.gene89645:CDS | 40.0% | |
| TGTGGACATAAAAACAGAGG+GGG | - | chr8.3:27786931-27786950 | None:intergenic | 40.0% | |
| TTCACTGCTGCTGCTAATTT+AGG | - | chr8.3:27786309-27786328 | None:intergenic | 40.0% | |
| TTGAAGAGTAATGAGCAAGC+AGG | + | chr8.3:27786510-27786529 | MS.gene89645:CDS | 40.0% | |
| ! | AACTCACACAGTAGTTCTGT+GGG | + | chr8.3:27786729-27786748 | MS.gene89645:CDS | 40.0% |
| ! | ATGTAGCCCTTCTGTTTCTT+TGG | + | chr8.3:27786197-27786216 | MS.gene89645:intron | 40.0% |
| ! | GGGCATTCCCATTTTATCTT+AGG | - | chr8.3:27785807-27785826 | None:intergenic | 40.0% |
| !! | AGATTCATTTCTGGCATCTG+GGG | + | chr8.3:27787043-27787062 | MS.gene89645:CDS | 40.0% |
| !! | AGTAGTTCTGTGGGTTTTTC+TGG | + | chr8.3:27786738-27786757 | MS.gene89645:CDS | 40.0% |
| !! | CAGATTCATTTCTGGCATCT+GGG | + | chr8.3:27787042-27787061 | MS.gene89645:CDS | 40.0% |
| !! | GAATCTATCGATTTACCTCC+TGG | + | chr8.3:27785729-27785748 | MS.gene89645:CDS | 40.0% |
| !! | GTAGTTCTGTGGGTTTTTCT+GGG | + | chr8.3:27786739-27786758 | MS.gene89645:CDS | 40.0% |
| ACAGTATGCAAGTTCCCAGA+AGG | - | chr8.3:27787128-27787147 | None:intergenic | 45.0% | |
| ACTAGAAGATACCCCTGCTA+AGG | - | chr8.3:27786445-27786464 | None:intergenic | 45.0% | |
| AGCAGAAAATTACCGGGAGA+GGG | - | chr8.3:27785827-27785846 | None:intergenic | 45.0% | |
| AGGTTCAGCATCTGCTGTAA+AGG | + | chr8.3:27787199-27787218 | MS.gene89645:CDS | 45.0% | |
| ATAGACTCTTCCTCCTCGAT+GGG | - | chr8.3:27786276-27786295 | None:intergenic | 45.0% | |
| ATCATGCTGAAAGGGGCAAT+CGG | - | chr8.3:27787420-27787439 | None:intergenic | 45.0% | |
| ATGAGGTTCAGATGTAGGTG+TGG | - | chr8.3:27786949-27786968 | None:intergenic | 45.0% | |
| ATGGGAATGATTGGGATGAG+AGG | - | chr8.3:27786258-27786277 | None:intergenic | 45.0% | |
| ATTAGGCAACATGGTGCAGA+TGG | + | chr8.3:27787245-27787264 | MS.gene89645:CDS | 45.0% | |
| ATTTGAGGACGAACTTGCAG+TGG | - | chr8.3:27786622-27786641 | None:intergenic | 45.0% | |
| CATGATGTTTCAGCTGAGTC+GGG | + | chr8.3:27787434-27787453 | MS.gene89645:CDS | 45.0% | |
| CCAGATGCCAGAAATGAATC+TGG | - | chr8.3:27787044-27787063 | None:intergenic | 45.0% | |
| CTAGAAGATACCCCTGCTAA+GGG | - | chr8.3:27786444-27786463 | None:intergenic | 45.0% | |
| GATACGCTGGACTCACAAAT+AGG | + | chr8.3:27787272-27787291 | MS.gene89645:CDS | 45.0% | |
| GCAAGAAAGTAGGGAGAAAG+AGG | + | chr8.3:27786031-27786050 | MS.gene89645:CDS | 45.0% | |
| GCATGATGTTTCAGCTGAGT+CGG | + | chr8.3:27787433-27787452 | MS.gene89645:CDS | 45.0% | |
| GGCATATGAGGTTCAGATGT+AGG | - | chr8.3:27786954-27786973 | None:intergenic | 45.0% | |
| TCCAGAAGTGAGTGTAACCA+TGG | - | chr8.3:27786646-27786665 | None:intergenic | 45.0% | |
| TCCATGGTTACACTCACTTC+TGG | + | chr8.3:27786642-27786661 | MS.gene89645:CDS | 45.0% | |
| TTAGGCAACATGGTGCAGAT+GGG | + | chr8.3:27787246-27787265 | MS.gene89645:CDS | 45.0% | |
| ! | CTAATTGGCTAGTTGCAGCT+GGG | + | chr8.3:27786009-27786028 | MS.gene89645:CDS | 45.0% |
| ! | GAACTCACACAGTAGTTCTG+TGG | + | chr8.3:27786728-27786747 | MS.gene89645:CDS | 45.0% |
| ! | GTAGTTGGCTTACCAGATGT+AGG | - | chr8.3:27786801-27786820 | None:intergenic | 45.0% |
| !! | AGAGGGGGATATTGGTTTAC+TGG | - | chr8.3:27786916-27786935 | None:intergenic | 45.0% |
| !! | AGCAGGGGTATCTTCTAGTT+TGG | + | chr8.3:27786446-27786465 | MS.gene89645:CDS | 45.0% |
| !! | CCAGATTCATTTCTGGCATC+TGG | + | chr8.3:27787041-27787060 | MS.gene89645:CDS | 45.0% |
| AAAATGGGAATGCCCTCTCC+CGG | + | chr8.3:27785812-27785831 | MS.gene89645:CDS | 50.0% | |
| AAATGACCGCTTTCGAACCC+AGG | - | chr8.3:27785750-27785769 | None:intergenic | 50.0% | |
| AAGTTCCCAGAAGGAGGCAA+TGG | - | chr8.3:27787119-27787138 | None:intergenic | 50.0% | |
| ACAGTTCCATTGCCTCCTTC+TGG | + | chr8.3:27787110-27787129 | MS.gene89645:CDS | 50.0% | |
| AGACAGTACGGGGGGAATTA+CGG | - | chr8.3:27786401-27786420 | None:intergenic | 50.0% | |
| AGCATCTGAGGAGACAGTAC+GGG | - | chr8.3:27786412-27786431 | None:intergenic | 50.0% | |
| CAGCAGAAAATTACCGGGAG+AGG | - | chr8.3:27785828-27785847 | None:intergenic | 50.0% | |
| CAGTTCCATTGCCTCCTTCT+GGG | + | chr8.3:27787111-27787130 | MS.gene89645:CDS | 50.0% | |
| CATAGACTCTTCCTCCTCGA+TGG | - | chr8.3:27786277-27786296 | None:intergenic | 50.0% | |
| CATCCCAATCATTCCCATCG+AGG | + | chr8.3:27786260-27786279 | MS.gene89645:CDS | 50.0% | |
| CCAGCTGCAACTAGCCAATT+AGG | - | chr8.3:27786011-27786030 | None:intergenic | 50.0% | |
| CCTCCTCGATGGGAATGATT+GGG | - | chr8.3:27786266-27786285 | None:intergenic | 50.0% | |
| CTCGTCTAATGCCCTTAGCA+GGG | + | chr8.3:27786430-27786449 | MS.gene89645:CDS | 50.0% | |
| CTGCACCATGTTGCCTAATG+AGG | - | chr8.3:27787244-27787263 | None:intergenic | 50.0% | |
| GAGCATCTGAGGAGACAGTA+CGG | - | chr8.3:27786413-27786432 | None:intergenic | 50.0% | |
| GCAGGAGCAAACAGAGTAGT+TGG | - | chr8.3:27786816-27786835 | None:intergenic | 50.0% | |
| GCCAGAAATGAATCTGGCTG+AGG | - | chr8.3:27787038-27787057 | None:intergenic | 50.0% | |
| GCCTCAGCCAGATTCATTTC+TGG | + | chr8.3:27787034-27787053 | MS.gene89645:CDS | 50.0% | |
| GTATGCAAGTTCCCAGAAGG+AGG | - | chr8.3:27787125-27787144 | None:intergenic | 50.0% | |
| TACCTAGGAGGAATGGCAGA+GGG | - | chr8.3:27786104-27786123 | None:intergenic | 50.0% | |
| TCCTCCTCGATGGGAATGAT+TGG | - | chr8.3:27786267-27786286 | None:intergenic | 50.0% | |
| TCGTCTAATGCCCTTAGCAG+GGG | + | chr8.3:27786431-27786450 | MS.gene89645:CDS | 50.0% | |
| TGCAGCTGGGCAAGAAAGTA+GGG | + | chr8.3:27786022-27786041 | MS.gene89645:CDS | 50.0% | |
| TTACCTAGGAGGAATGGCAG+AGG | - | chr8.3:27786105-27786124 | None:intergenic | 50.0% | |
| TTACCTCCTGGGTTCGAAAG+CGG | + | chr8.3:27785741-27785760 | MS.gene89645:CDS | 50.0% | |
| TTGACAGGTCTGGGCATATG+AGG | - | chr8.3:27786966-27786985 | None:intergenic | 50.0% | |
| TTGCAGCTGGGCAAGAAAGT+AGG | + | chr8.3:27786021-27786040 | MS.gene89645:CDS | 50.0% | |
| ! | CCTAATTGGCTAGTTGCAGC+TGG | + | chr8.3:27786008-27786027 | MS.gene89645:CDS | 50.0% |
| ! | CTGGATACTGGCCTAGACAA+CGG | - | chr8.3:27786897-27786916 | None:intergenic | 50.0% |
| ATCTGAGGAGACAGTACGGG+GGG | - | chr8.3:27786409-27786428 | None:intergenic | 55.0% | |
| CACTCGATGTGGCAGCTTCT+AGG | + | chr8.3:27786706-27786725 | MS.gene89645:CDS | 55.0% | |
| CATCTGAGGAGACAGTACGG+GGG | - | chr8.3:27786410-27786429 | None:intergenic | 55.0% | |
| CCCAATCATTCCCATCGAGG+AGG | + | chr8.3:27786263-27786282 | MS.gene89645:CDS | 55.0% | |
| CGGGAGCTGGTAACTTCCTA+GGG | + | chr8.3:27787453-27787472 | MS.gene89645:CDS | 55.0% | |
| GAGCTGGTAACTTCCTAGGG+GGG | + | chr8.3:27787456-27787475 | MS.gene89645:CDS | 55.0% | |
| GCATCTGAGGAGACAGTACG+GGG | - | chr8.3:27786411-27786430 | None:intergenic | 55.0% | |
| GCTCGTCTAATGCCCTTAGC+AGG | + | chr8.3:27786429-27786448 | MS.gene89645:CDS | 55.0% | |
| GGAGCTGGTAACTTCCTAGG+GGG | + | chr8.3:27787455-27787474 | MS.gene89645:CDS | 55.0% | |
| GGGAGCTGGTAACTTCCTAG+GGG | + | chr8.3:27787454-27787473 | MS.gene89645:CDS | 55.0% | |
| GGGCATTAGACGAGCATCTG+AGG | - | chr8.3:27786424-27786443 | None:intergenic | 55.0% | |
| TAGGAGGAATGGCAGAGGGT+CGG | - | chr8.3:27786100-27786119 | None:intergenic | 55.0% | |
| TCGGGAGCTGGTAACTTCCT+AGG | + | chr8.3:27787452-27787471 | MS.gene89645:CDS | 55.0% | |
| TGAGGACGAACTTGCAGTGG+TGG | - | chr8.3:27786619-27786638 | None:intergenic | 55.0% | |
| TGCAGATGGGCAAGATACGC+TGG | + | chr8.3:27787259-27787278 | MS.gene89645:CDS | 55.0% | |
| ! | TTAATAGCTCGAGGGGGTGC+AGG | + | chr8.3:27787387-27787406 | MS.gene89645:CDS | 55.0% |
| ! | TTTTAGCACTCTGCCCCCCT+AGG | - | chr8.3:27787472-27787491 | None:intergenic | 55.0% |
| !! | AGCTGCAGCCTCTGAAGTTG+TGG | + | chr8.3:27786479-27786498 | MS.gene89645:CDS | 55.0% |
| !! | TGCAGCCTCTGAAGTTGTGG+CGG | + | chr8.3:27786482-27786501 | MS.gene89645:CDS | 55.0% |
| AACGGAGCTGACGCAGTTGC+TGG | - | chr8.3:27786879-27786898 | None:intergenic | 60.0% | |
| AGGAGGAATGGCAGAGGGTC+GGG | - | chr8.3:27786099-27786118 | None:intergenic | 60.0% | |
| CTGCGTCAGCTCCGTTGTCT+AGG | + | chr8.3:27786883-27786902 | MS.gene89645:CDS | 60.0% | |
| GACCCTCTGCCATTCCTCCT+AGG | + | chr8.3:27786099-27786118 | MS.gene89645:CDS | 60.0% | |
| GATGGCCGCCACAACTTCAG+AGG | - | chr8.3:27786490-27786509 | None:intergenic | 60.0% | |
| GGACGAACTTGCAGTGGTGG+CGG | - | chr8.3:27786616-27786635 | None:intergenic | 60.0% | |
| GTTTCAGCTGAGTCGGGAGC+TGG | + | chr8.3:27787440-27787459 | MS.gene89645:CDS | 60.0% | |
| TGACCGCTTTCGAACCCAGG+AGG | - | chr8.3:27785747-27785766 | None:intergenic | 60.0% | |
| GGAGGAATGGCAGAGGGTCG+GGG | - | chr8.3:27786098-27786117 | None:intergenic | 65.0% | |
| ! | AGCTCGAGGGGGTGCAGGAA+TGG | + | chr8.3:27787392-27787411 | MS.gene89645:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27785708 | 27787505 | 27785708 | ID=MS.gene89645 |
| chr8.3 | mRNA | 27785708 | 27787505 | 27785708 | ID=MS.gene89645.t1;Parent=MS.gene89645 |
| chr8.3 | exon | 27785708 | 27785833 | 27785708 | ID=MS.gene89645.t1.exon1;Parent=MS.gene89645.t1 |
| chr8.3 | CDS | 27785708 | 27785833 | 27785708 | ID=cds.MS.gene89645.t1;Parent=MS.gene89645.t1 |
| chr8.3 | exon | 27785996 | 27786120 | 27785996 | ID=MS.gene89645.t1.exon2;Parent=MS.gene89645.t1 |
| chr8.3 | CDS | 27785996 | 27786120 | 27785996 | ID=cds.MS.gene89645.t1;Parent=MS.gene89645.t1 |
| chr8.3 | exon | 27786203 | 27787505 | 27786203 | ID=MS.gene89645.t1.exon3;Parent=MS.gene89645.t1 |
| chr8.3 | CDS | 27786203 | 27787505 | 27786203 | ID=cds.MS.gene89645.t1;Parent=MS.gene89645.t1 |
| Gene Sequence |
| Protein sequence |
