Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89710.t1 | XP_024629136.1 | 96.9 | 1476 | 43 | 2 | 1 | 1474 | 1 | 1475 | 0.00E+00 | 2839.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89710.t1 | A0A396GQG8 | 96.9 | 1476 | 43 | 2 | 1 | 1474 | 1 | 1475 | 0.0e+00 | 2839.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06013 | MS.gene89710 | 0.918388 | 1.66E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89710.t1 | MTR_8g098950 | 95.393 | 1476 | 32 | 4 | 1 | 1474 | 1 | 1442 | 0.0 | 2877 |
| MS.gene89710.t1 | MTR_8g098950 | 97.656 | 1365 | 29 | 2 | 1 | 1363 | 1 | 1364 | 0.0 | 2732 |
| MS.gene89710.t1 | MTR_8g098950 | 96.708 | 972 | 30 | 1 | 1 | 970 | 1 | 972 | 0.0 | 1942 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89710.t1 | AT4G11270 | 52.381 | 1512 | 616 | 27 | 1 | 1474 | 1 | 1446 | 0.0 | 1424 |
| MS.gene89710.t1 | AT4G11270 | 52.381 | 1512 | 616 | 27 | 1 | 1474 | 1 | 1446 | 0.0 | 1424 |
Find 324 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGCCCTCTGAAGTTTC+TGG | 0.111846 | 4.4:-5127379 | None:intergenic |
| CAGATGCTGTTGACCAAATT+TGG | 0.121178 | 4.4:-5130751 | None:intergenic |
| ATGGTGATATATTATATATT+TGG | 0.180103 | 4.4:+5126852 | MS.gene89710:CDS |
| GGTGGTCACTGGGATCTTTC+TGG | 0.183894 | 4.4:+5133819 | MS.gene89710:CDS |
| GTGTTTGTAGCTGATTCTTA+TGG | 0.199424 | 4.4:+5125462 | MS.gene89710:CDS |
| GACTACTGACATAAACTTAA+TGG | 0.218019 | 4.4:-5125409 | None:intergenic |
| CAAGTTCTCTGTATGATTTA+AGG | 0.220102 | 4.4:-5127053 | None:intergenic |
| ACACCTTATGCTGTCGTATA+TGG | 0.238602 | 4.4:+5126329 | MS.gene89710:CDS |
| TGTCTTTGTCAAACACATTA+TGG | 0.242683 | 4.4:+5126821 | MS.gene89710:CDS |
| GAAGCAATTGCTTCATAATC+TGG | 0.243762 | 4.4:+5134442 | MS.gene89710:CDS |
| CCAAACAGAGAAGATGAATT+TGG | 0.243896 | 4.4:-5127166 | None:intergenic |
| AAGCATTATGGCCAGCATTT+TGG | 0.247182 | 4.4:+5133937 | MS.gene89710:CDS |
| TGGATTGCAAAATTCGTATA+TGG | 0.256201 | 4.4:+5126561 | MS.gene89710:CDS |
| TGTAACAATGATAAAGGTTT+TGG | 0.268383 | 4.4:+5132503 | MS.gene89710:CDS |
| CCTCTGAAGTTTCTGGATTA+TGG | 0.268425 | 4.4:-5127372 | None:intergenic |
| TATGAAGCCACCTTCGTTAC+AGG | 0.268660 | 4.4:+5128565 | MS.gene89710:CDS |
| GACATAGCCAACTTCATTAA+TGG | 0.273932 | 4.4:-5130470 | None:intergenic |
| TATGATTAGGTGGTGGTCAC+TGG | 0.280148 | 4.4:+5133808 | MS.gene89710:CDS |
| GCGTGGTTCTCCAAGATATT+TGG | 0.289352 | 4.4:+5130820 | MS.gene89710:CDS |
| CCAAATTCATCTTCTCTGTT+TGG | 0.292682 | 4.4:+5127166 | MS.gene89710:CDS |
| ATGCTTGACCGGGATGAATT+AGG | 0.293876 | 4.4:-5133920 | None:intergenic |
| TGTTCTTGAAAGTGATGATA+TGG | 0.300882 | 4.4:+5125776 | MS.gene89710:CDS |
| GTCATTATCAACCTGATATA+AGG | 0.304019 | 4.4:+5125943 | MS.gene89710:CDS |
| CGGAACATGGGCTTATGATT+AGG | 0.304377 | 4.4:+5133795 | MS.gene89710:CDS |
| TTGCTCACCGCAACCGCTTC+AGG | 0.305269 | 4.4:+5132555 | MS.gene89710:CDS |
| ATGCAGTGTAACAATGATAA+AGG | 0.306296 | 4.4:+5132497 | MS.gene89710:intron |
| TTGCTGCTGCACTGGCTATC+TGG | 0.307446 | 4.4:+5130402 | MS.gene89710:CDS |
| AACGAAGGTGGCTTCATATC+TGG | 0.312972 | 4.4:-5128560 | None:intergenic |
| ATCGGACCCGGCGGTGTAAA+AGG | 0.317627 | 4.4:-5124020 | None:intergenic |
| TTCATCCCGGTCAAGCATTA+TGG | 0.318357 | 4.4:+5133925 | MS.gene89710:CDS |
| CAGTGATTGAAAGCCAAATT+TGG | 0.319590 | 4.4:+5130738 | MS.gene89710:CDS |
| TCTGAGATTCCTCGTCTAAT+TGG | 0.320800 | 4.4:+5130572 | MS.gene89710:CDS |
| TTTGAAGCAGCAGGGTGTTC+AGG | 0.324441 | 4.4:+5127333 | MS.gene89710:CDS |
| ACTACTGACATAAACTTAAT+GGG | 0.326146 | 4.4:-5125408 | None:intergenic |
| GAATTTCCTTTACCTGCATT+AGG | 0.327129 | 4.4:-5127136 | None:intergenic |
| CTGTCCATGTCCTCAGAATC+TGG | 0.333213 | 4.4:-5126221 | None:intergenic |
| GCAAATATGTATCCACAATA+AGG | 0.333561 | 4.4:-5125341 | None:intergenic |
| AGGTTAACAATGCAAGCATT+AGG | 0.333935 | 4.4:+5131750 | MS.gene89710:CDS |
| TGAAAAGCAGCTTAATTTGC+AGG | 0.337493 | 4.4:+5133964 | MS.gene89710:CDS |
| AACTAATATTTGTTCCTCCT+TGG | 0.340075 | 4.4:+5133885 | MS.gene89710:CDS |
| CATCTTTGACAGGGCATCCT+TGG | 0.341731 | 4.4:+5126657 | MS.gene89710:CDS |
| GTCTCTAACCAAGTCAGTTT+GGG | 0.349797 | 4.4:-5130207 | None:intergenic |
| TACAGGTTCTGTACTTTGTT+TGG | 0.354839 | 4.4:+5126472 | MS.gene89710:CDS |
| AGGCGGCAGGTGACGGTGGT+TGG | 0.357011 | 4.4:-5124000 | None:intergenic |
| ACTAATATTTGTTCCTCCTT+GGG | 0.359112 | 4.4:+5133886 | MS.gene89710:CDS |
| TTGCCGCTTTCATAGGTATC+AGG | 0.359869 | 4.4:-5125807 | None:intergenic |
| GGTCCGATGGCTCCATCATT+TGG | 0.360319 | 4.4:+5124035 | MS.gene89710:CDS |
| ATCACGAGGAACCGTTACTA+TGG | 0.362739 | 4.4:+5126027 | MS.gene89710:CDS |
| CACATCTCCAACTGCTAGTC+TGG | 0.367058 | 4.4:-5131720 | None:intergenic |
| TCATTGACATTGTCATTTCC+TGG | 0.367296 | 4.4:+5127562 | MS.gene89710:CDS |
| AAGTTCTCTGTATGATTTAA+GGG | 0.369030 | 4.4:-5127052 | None:intergenic |
| TGGTGATATATTATATATTT+GGG | 0.369140 | 4.4:+5126853 | MS.gene89710:CDS |
| TGCGAATACCGGTGAGGAAT+CGG | 0.370374 | 4.4:-5124074 | None:intergenic |
| TGTCTCTAACCAAGTCAGTT+TGG | 0.370930 | 4.4:-5130208 | None:intergenic |
| TCCTTTACCTGCATTAGGTT+TGG | 0.374018 | 4.4:-5127131 | None:intergenic |
| ATTAGTATGAATTCTATATC+TGG | 0.375020 | 4.4:+5126953 | MS.gene89710:CDS |
| AATCAAGTTGCCGCTTTCAT+AGG | 0.377504 | 4.4:-5125814 | None:intergenic |
| TGTTTGTAGCTGATTCTTAT+GGG | 0.377708 | 4.4:+5125463 | MS.gene89710:CDS |
| TACAAGGCATGGTAATGAAC+TGG | 0.379427 | 4.4:+5134511 | MS.gene89710:CDS |
| GCAGTAAGTATTCTTCAAAA+AGG | 0.381772 | 4.4:-5127411 | None:intergenic |
| CATTATTGTTGCTGCTGCAC+TGG | 0.382714 | 4.4:+5130394 | MS.gene89710:CDS |
| AGGCATGCTTCCAGAGTTCC+TGG | 0.384960 | 4.4:+5131639 | MS.gene89710:CDS |
| TTTAAACGGGTTCTGGTGTC+TGG | 0.386494 | 4.4:+5126533 | MS.gene89710:CDS |
| AATTCTGTTAATGATGAGTT+AGG | 0.387201 | 4.4:+5125276 | MS.gene89710:CDS |
| AATAAGGATAGTAGATTTAG+AGG | 0.387251 | 4.4:-5125325 | None:intergenic |
| TTCTAGCCAAGTCAGTATCT+TGG | 0.389653 | 4.4:-5130306 | None:intergenic |
| AACCTTGCATCATCAACTAT+TGG | 0.391860 | 4.4:-5127019 | None:intergenic |
| GGTTCTGGTGTCTGGCAGTA+TGG | 0.393700 | 4.4:+5126541 | MS.gene89710:CDS |
| TATCTTGGATTCCTCGTCTT+GGG | 0.395144 | 4.4:-5130291 | None:intergenic |
| GGTTAACAATGCAAGCATTA+GGG | 0.397716 | 4.4:+5131751 | MS.gene89710:CDS |
| AATCATATGAAGTGCAAGAT+TGG | 0.398976 | 4.4:+5130327 | MS.gene89710:CDS |
| GGCGGCAGGTGACGGTGGTT+GGG | 0.399914 | 4.4:-5123999 | None:intergenic |
| AGCGACTGCTTTCTTTCAGT+TGG | 0.406630 | 4.4:+5126680 | MS.gene89710:CDS |
| TATATTAGCTTCGGGTCTGC+AGG | 0.408303 | 4.4:+5127528 | MS.gene89710:CDS |
| ATTCTATACCCGGAATTTCA+TGG | 0.409799 | 4.4:+5128529 | MS.gene89710:CDS |
| AAAACAGACAACCTTATATC+AGG | 0.411061 | 4.4:-5125954 | None:intergenic |
| TACAAACCTTGTCAAGGTAC+TGG | 0.413998 | 4.4:-5130844 | None:intergenic |
| GATACTATCTTCCCCTTGTA+AGG | 0.418265 | 4.4:-5126275 | None:intergenic |
| GAAGGATAGTTCACGTGTCC+AGG | 0.420521 | 4.4:-5126761 | None:intergenic |
| AAACTTCAGAGGGCCACAAT+TGG | 0.420585 | 4.4:+5127383 | MS.gene89710:CDS |
| CACTGCTCCTGAAGCGGTTG+CGG | 0.422040 | 4.4:-5132562 | None:intergenic |
| CTAGAGATTAAATCAACCTT+TGG | 0.424270 | 4.4:+5126188 | MS.gene89710:CDS |
| TGTTTCTCTTGAGACTCTGC+AGG | 0.424988 | 4.4:+5126724 | MS.gene89710:CDS |
| GCAGATCCGTTGCGTGCATA+TGG | 0.425413 | 4.4:+5123924 | MS.gene89710:CDS |
| GGAGCTGTACTTCTCGTTCA+TGG | 0.426958 | 4.4:-5130492 | None:intergenic |
| ACCAGCAGGAATCTCGGAAT+GGG | 0.427475 | 4.4:-5125922 | None:intergenic |
| GGAGACCACATATCACAATT+TGG | 0.430673 | 4.4:+5126048 | MS.gene89710:CDS |
| GGCAGAGGGATTCAATGGTC+TGG | 0.432604 | 4.4:+5125584 | MS.gene89710:CDS |
| TTTGAATTGCATAGAGGTAG+AGG | 0.436014 | 4.4:-5130158 | None:intergenic |
| AACTTCTTTGAAAGTTGTCC+AGG | 0.439895 | 4.4:-5131657 | None:intergenic |
| TGTTCATCCATTAATGAAGT+TGG | 0.439950 | 4.4:+5130463 | MS.gene89710:CDS |
| TAGAAGAAAATTGCCACCTT+GGG | 0.440055 | 4.4:+5125179 | MS.gene89710:CDS |
| AATGGGCAAGTGCATTTGAT+AGG | 0.443101 | 4.4:-5127208 | None:intergenic |
| AATCCATATACGACAGCATA+AGG | 0.443707 | 4.4:-5126332 | None:intergenic |
| GGGACGTAAAGACAGGTTCC+CGG | 0.445283 | 4.4:+5126873 | MS.gene89710:CDS |
| TGCAAGGAGCTCAGCAGCAG+TGG | 0.445762 | 4.4:-5130513 | None:intergenic |
| TGCTTCAAATTGATATTCAC+TGG | 0.446387 | 4.4:-5127319 | None:intergenic |
| ACCTCTCTTATCGATTAGAA+TGG | 0.447008 | 4.4:+5134465 | MS.gene89710:CDS |
| TTTCATGGAAATTTATCCAT+TGG | 0.449262 | 4.4:+5125384 | MS.gene89710:CDS |
| CAGGTGGAAAGAATGTTTCC+TGG | 0.454461 | 4.4:+5126743 | MS.gene89710:CDS |
| ATAATGTGTTTGACAAAGAC+AGG | 0.456171 | 4.4:-5126819 | None:intergenic |
| TGCTGGCCATAATGCTTGAC+CGG | 0.457096 | 4.4:-5133931 | None:intergenic |
| TATCGTTGTTGACTCTCATA+AGG | 0.457374 | 4.4:+5130792 | MS.gene89710:CDS |
| CAGAATTTCTCGGGACATAC+AGG | 0.458238 | 4.4:+5126455 | MS.gene89710:CDS |
| CTTGCCCTCACCACTCTCCA+TGG | 0.459379 | 4.4:-5127296 | None:intergenic |
| TTGATAAGTGCTTGTTGTGA+TGG | 0.461419 | 4.4:+5125114 | MS.gene89710:CDS |
| AGGTACTGGGCCAAATATCT+TGG | 0.464340 | 4.4:-5130830 | None:intergenic |
| TGAAAGTTGTCCAGGAACTC+TGG | 0.464546 | 4.4:-5131649 | None:intergenic |
| ACGGGCCACTCAACTCTACT+TGG | 0.465336 | 4.4:-5130607 | None:intergenic |
| CAAGGATGCCCTGTCAAAGA+TGG | 0.465347 | 4.4:-5126656 | None:intergenic |
| GCGGTTGCGGTGAGCAAACT+AGG | 0.466009 | 4.4:-5132549 | None:intergenic |
| GTTTCTGGATTATGGTGGCT+TGG | 0.468948 | 4.4:-5127364 | None:intergenic |
| TCTCCTTCCAAGTTTAGCTA+TGG | 0.470299 | 4.4:+5130694 | MS.gene89710:CDS |
| TCCCACGTATGAGCCGCTCC+CGG | 0.471481 | 4.4:-5126892 | None:intergenic |
| TTCTATTAAGCAGACTTTGG+TGG | 0.471664 | 4.4:+5130667 | MS.gene89710:CDS |
| TACAAACTCCCAAACTGACT+TGG | 0.473976 | 4.4:+5130199 | MS.gene89710:CDS |
| TGCACACAAACAGAATTTCT+CGG | 0.474513 | 4.4:+5126445 | MS.gene89710:CDS |
| CTAGCAGTTGGAGATGTGAT+TGG | 0.477963 | 4.4:+5131725 | MS.gene89710:CDS |
| AACTTCAGAGGGCCACAATT+GGG | 0.478612 | 4.4:+5127384 | MS.gene89710:CDS |
| TCCCGGGAGCGGCTCATACG+TGG | 0.478636 | 4.4:+5126890 | MS.gene89710:CDS |
| GTGTAAAAGGCGGCAGGTGA+CGG | 0.479927 | 4.4:-5124007 | None:intergenic |
| ACTGAAGCTCGTGCTGTTGG+TGG | 0.480415 | 4.4:+5125750 | MS.gene89710:CDS |
| AAGTAATTATTATCCTTACA+AGG | 0.483697 | 4.4:+5126262 | MS.gene89710:CDS |
| TTGTCTAGTGATACCATGAT+TGG | 0.485271 | 4.4:+5125681 | MS.gene89710:CDS |
| GAGATTAAATCAACCTTTGG+TGG | 0.485449 | 4.4:+5126191 | MS.gene89710:CDS |
| TCCGTTGCGTGCATATGGTC+AGG | 0.485556 | 4.4:+5123929 | MS.gene89710:CDS |
| GTATCTTGGATTCCTCGTCT+TGG | 0.486139 | 4.4:-5130292 | None:intergenic |
| CCCACGTATGAGCCGCTCCC+GGG | 0.486180 | 4.4:-5126891 | None:intergenic |
| TGGAATTTCTGTCAATGACT+TGG | 0.487011 | 4.4:-5130633 | None:intergenic |
| TAAAGACAGGTTCCCGGGAG+CGG | 0.487760 | 4.4:+5126879 | MS.gene89710:CDS |
| GGACGTAAAGACAGGTTCCC+GGG | 0.487905 | 4.4:+5126874 | MS.gene89710:CDS |
| TCCAAACCTAATGCAGGTAA+AGG | 0.490326 | 4.4:+5127130 | MS.gene89710:CDS |
| CCTCTCTTATCGATTAGAAT+GGG | 0.490721 | 4.4:+5134466 | MS.gene89710:CDS |
| CAAGATTGGATTTCTTGTGT+TGG | 0.491921 | 4.4:+5130341 | MS.gene89710:CDS |
| TCCACTGAAGCTCGTGCTGT+TGG | 0.492950 | 4.4:+5125747 | MS.gene89710:CDS |
| CTGCTTTCTTTCAGTTGGAG+AGG | 0.493151 | 4.4:+5126685 | MS.gene89710:CDS |
| CTTGGTTAGAGACAAACATC+TGG | 0.493314 | 4.4:+5130217 | MS.gene89710:CDS |
| TATATTTGGGACGTAAAGAC+AGG | 0.494778 | 4.4:+5126866 | MS.gene89710:CDS |
| ACACAGTGATAAATTTCCAT+TGG | 0.495230 | 4.4:+5125548 | MS.gene89710:CDS |
| ATGATTAGGTGGTGGTCACT+GGG | 0.496764 | 4.4:+5133809 | MS.gene89710:CDS |
| TACCGGTGAGGAATCGGAAG+TGG | 0.497309 | 4.4:-5124068 | None:intergenic |
| ACAAACCTTGTCAAGGTACT+GGG | 0.498377 | 4.4:-5130843 | None:intergenic |
| AGACAAGCTAATCAAACGTT+GGG | 0.500196 | 4.4:-5127742 | None:intergenic |
| GGATTGCAAAATTCGTATAT+GGG | 0.500812 | 4.4:+5126562 | MS.gene89710:CDS |
| ACCTTGGGTTGGTACTCCTA+TGG | 0.503645 | 4.4:+5125194 | MS.gene89710:CDS |
| GTTCTTGAAAGTGATGATAT+GGG | 0.504431 | 4.4:+5125777 | MS.gene89710:CDS |
| TTCCTAAGTACCTCTCCATC+TGG | 0.505656 | 4.4:-5132618 | None:intergenic |
| ATATCTGGCTCAGTGCTGAA+TGG | 0.506279 | 4.4:+5126968 | MS.gene89710:CDS |
| AGCTAATCAAACGTTGGGCA+AGG | 0.508381 | 4.4:-5127737 | None:intergenic |
| AAGGATGCCCTGTCAAAGAT+GGG | 0.508415 | 4.4:-5126655 | None:intergenic |
| AAAAGAAGCCTCTCCAATCA+TGG | 0.508781 | 4.4:-5125694 | None:intergenic |
| GAATATCAATTTGAAGCAGC+AGG | 0.509107 | 4.4:+5127324 | MS.gene89710:CDS |
| ATATCAGCCATAGCTAAACT+TGG | 0.510612 | 4.4:-5130701 | None:intergenic |
| TTTGTTGTGTGGAATAATAG+AGG | 0.512901 | 4.4:+5125846 | MS.gene89710:CDS |
| TTCCAATAGTTGATGATGCA+AGG | 0.515730 | 4.4:+5127017 | MS.gene89710:CDS |
| TTCCACACAACAAAGTGTGC+TGG | 0.517444 | 4.4:-5125837 | None:intergenic |
| GAGGTTCTCAGCAATAATCA+TGG | 0.518691 | 4.4:-5126303 | None:intergenic |
| TGGTTGCTGTCAATGAGTCT+TGG | 0.520949 | 4.4:+5131696 | MS.gene89710:CDS |
| CATAAACTTAATGGGGCCAA+TGG | 0.521443 | 4.4:-5125400 | None:intergenic |
| AATGATGGAGCCATCGGACC+CGG | 0.521661 | 4.4:-5124032 | None:intergenic |
| CATAAGCCCATGTTCCGAAA+AGG | 0.523106 | 4.4:-5133789 | None:intergenic |
| GAGACACAATACCAGGGAAT+GGG | 0.523210 | 4.4:-5127225 | None:intergenic |
| TAAATCTACTATCCTTATTG+TGG | 0.524443 | 4.4:+5125329 | MS.gene89710:CDS |
| GGCAAGTGCATTTGATAGGA+AGG | 0.526021 | 4.4:-5127204 | None:intergenic |
| TCTGTCAATGACTTGGAAGA+CGG | 0.526922 | 4.4:-5130626 | None:intergenic |
| CTGAAGTTTCTGGATTATGG+TGG | 0.527661 | 4.4:-5127369 | None:intergenic |
| CTTTAGCAGCATTCTATACC+CGG | 0.528236 | 4.4:+5128519 | MS.gene89710:CDS |
| TTTGTATTAATTGACTCGCT+AGG | 0.528538 | 4.4:-5130182 | None:intergenic |
| TATTAAGCAGACTTTGGTGG+AGG | 0.528887 | 4.4:+5130670 | MS.gene89710:CDS |
| AGTTGTACGTGTATATCCTA+TGG | 0.532517 | 4.4:+5131676 | MS.gene89710:CDS |
| CTCCACTTCCGATTCCTCAC+CGG | 0.535514 | 4.4:+5124066 | MS.gene89710:CDS |
| AAACTAAGAGACACAATACC+AGG | 0.536773 | 4.4:-5127232 | None:intergenic |
| CTGTCAATGACTTGGAAGAC+GGG | 0.536784 | 4.4:-5130625 | None:intergenic |
| ATATTTGTTCCTCCTTGGGA+GGG | 0.537043 | 4.4:+5133890 | MS.gene89710:CDS |
| ATATTAGCTTCGGGTCTGCA+GGG | 0.537305 | 4.4:+5127529 | MS.gene89710:CDS |
| AGAGACACAATACCAGGGAA+TGG | 0.538089 | 4.4:-5127226 | None:intergenic |
| GGAGAGGGACCACCAAATGA+TGG | 0.538095 | 4.4:-5124047 | None:intergenic |
| TCAAGAGTGGCACTCTGACC+AGG | 0.538111 | 4.4:-5127580 | None:intergenic |
| AAATGCACTTGCCCATTCCC+TGG | 0.538664 | 4.4:+5127214 | MS.gene89710:CDS |
| TTGGATGCAAGTGGGCCACC+AGG | 0.538757 | 4.4:+5132522 | MS.gene89710:CDS |
| GTGAGCAAACTAGGAAGTCC+TGG | 0.539138 | 4.4:-5132540 | None:intergenic |
| TTAGCTATGGCTGATATACC+AGG | 0.539879 | 4.4:+5130707 | MS.gene89710:CDS |
| TGACAGTGGCAGTCTTATCA+AGG | 0.540306 | 4.4:+5126589 | MS.gene89710:CDS |
| CCGGCGGTGTAAAAGGCGGC+AGG | 0.541461 | 4.4:-5124013 | None:intergenic |
| AATATTTGTTCCTCCTTGGG+AGG | 0.543763 | 4.4:+5133889 | MS.gene89710:CDS |
| TGGTTGGGTGAAAGCGGCAA+CGG | 0.544413 | 4.4:-5123984 | None:intergenic |
| TCAGGTTGATAATGACCAGC+AGG | 0.544767 | 4.4:-5125936 | None:intergenic |
| AGAAAATTGCCACCTTGGGT+TGG | 0.545016 | 4.4:+5125183 | MS.gene89710:CDS |
| CAAAGAGCGAGATCAGTGAT+TGG | 0.546097 | 4.4:-5125033 | None:intergenic |
| CCCCATTCCGAGATTCCTGC+TGG | 0.546190 | 4.4:+5125921 | MS.gene89710:CDS |
| TCAGTCATACTTGAAATGCT+TGG | 0.546277 | 4.4:-5127097 | None:intergenic |
| ACCAACAGCACGAGCTTCAG+TGG | 0.546772 | 4.4:-5125748 | None:intergenic |
| TTCTCTTGAGACTCTGCAGG+TGG | 0.546773 | 4.4:+5126727 | MS.gene89710:CDS |
| GATTGGATTTCTTGTGTTGG+TGG | 0.547229 | 4.4:+5130344 | MS.gene89710:CDS |
| AATTCTTCCAAACCTAATGC+AGG | 0.549367 | 4.4:+5127124 | MS.gene89710:CDS |
| AGTAATTATTATCCTTACAA+GGG | 0.550751 | 4.4:+5126263 | MS.gene89710:CDS |
| GCACACAAACAGAATTTCTC+GGG | 0.550780 | 4.4:+5126446 | MS.gene89710:CDS |
| ACTCAAGTTCAGCAGCCAGC+AGG | 0.552271 | 4.4:+5127766 | MS.gene89710:CDS |
| TGCTCTCCATGCCTTCTGCA+AGG | 0.554637 | 4.4:-5130529 | None:intergenic |
| AGGTAGAGGAATGGCATGAG+AGG | 0.555578 | 4.4:-5130144 | None:intergenic |
| GACCAGCAGGAATCTCGGAA+TGG | 0.556587 | 4.4:-5125923 | None:intergenic |
| GCTGCTGAGCTCCTTGCAGA+AGG | 0.558394 | 4.4:+5130518 | MS.gene89710:CDS |
| CAAGCTATACATACATATCT+CGG | 0.558412 | 4.4:-5125240 | None:intergenic |
| GATTAGAATGGGTTGCGGAA+CGG | 0.559358 | 4.4:+5134477 | MS.gene89710:CDS |
| ATCTGATTCACCTGTCCACA+TGG | 0.560688 | 4.4:+5130769 | MS.gene89710:CDS |
| TGAGGAATCGGAAGTGGAGA+GGG | 0.560802 | 4.4:-5124062 | None:intergenic |
| CCCGGGAGCGGCTCATACGT+GGG | 0.560836 | 4.4:+5126891 | MS.gene89710:CDS |
| CGACAGCATAAGGTGTAAAG+AGG | 0.564098 | 4.4:-5126322 | None:intergenic |
| ATAATGACCAGCAGGAATCT+CGG | 0.564893 | 4.4:-5125928 | None:intergenic |
| AAAAGCAACAATATTTCCAA+AGG | 0.565572 | 4.4:-5125628 | None:intergenic |
| ACTTTGTGAGCGGAAGGAAA+AGG | 0.565682 | 4.4:-5123956 | None:intergenic |
| AGTAGACTCAAACCAGTTGG+TGG | 0.566098 | 4.4:-5126144 | None:intergenic |
| TGCAAAGGATTCAAATCATG+TGG | 0.566355 | 4.4:+5134412 | MS.gene89710:CDS |
| GTAGAAGAAAATTGCCACCT+TGG | 0.568595 | 4.4:+5125178 | MS.gene89710:CDS |
| CCGATGGCTCCATCATTTGG+TGG | 0.568770 | 4.4:+5124038 | MS.gene89710:CDS |
| ATCTGGACTTGCACCACCAA+AGG | 0.569642 | 4.4:-5126204 | None:intergenic |
| GAGTCCATGGAGAGTGGTGA+GGG | 0.570233 | 4.4:+5127292 | MS.gene89710:CDS |
| TGGGAGATGTGATAGTAGAA+AGG | 0.570573 | 4.4:+5130237 | MS.gene89710:CDS |
| AAAGTACTTCTTACAAGGCA+TGG | 0.570990 | 4.4:+5134500 | MS.gene89710:CDS |
| TGGTCAGAGTGCCACTCTTG+AGG | 0.571821 | 4.4:+5127582 | MS.gene89710:CDS |
| GTGATGGTTTCTTGTGTGTG+TGG | 0.572650 | 4.4:+5125130 | MS.gene89710:CDS |
| AACAACGATACCATGTGGAC+AGG | 0.575250 | 4.4:-5130779 | None:intergenic |
| TTGCAGCAAGTTAAAGCGGT+GGG | 0.576860 | 4.4:+5124988 | MS.gene89710:intron |
| TTATCGATTAGAATGGGTTG+CGG | 0.577361 | 4.4:+5134472 | MS.gene89710:CDS |
| ACACATTATGGAACTTCTGA+TGG | 0.578065 | 4.4:+5126833 | MS.gene89710:CDS |
| AGTAGAAAGGATATCTCCTA+AGG | 0.578788 | 4.4:+5130250 | MS.gene89710:CDS |
| AACGGAAAGTACTTCTTACA+AGG | 0.578988 | 4.4:+5134495 | MS.gene89710:CDS |
| GCGGTTACTTTGTGAGCGGA+AGG | 0.579440 | 4.4:-5123962 | None:intergenic |
| TCTACTCAGCTCAACGGACA+TGG | 0.584522 | 4.4:+5126161 | MS.gene89710:CDS |
| CATCAATTTGAAGATAAACT+CGG | 0.584706 | 4.4:+5126077 | MS.gene89710:CDS |
| GAAAGAAAGCAGTCGCTCCA+AGG | 0.584899 | 4.4:-5126674 | None:intergenic |
| TATTAGCTTCGGGTCTGCAG+GGG | 0.585377 | 4.4:+5127530 | MS.gene89710:CDS |
| GCTAATCAAACGTTGGGCAA+GGG | 0.586039 | 4.4:-5127736 | None:intergenic |
| ACTGGACAGGAACAAAGTTC+CGG | 0.587058 | 4.4:-5133856 | None:intergenic |
| AGTTGGAGATGTGATTGGAG+AGG | 0.587786 | 4.4:+5131730 | MS.gene89710:CDS |
| TTAGGGTTTATGATATGCAA+AGG | 0.589003 | 4.4:+5131768 | MS.gene89710:CDS |
| AAGATTCTAACCTGTAACGA+AGG | 0.589008 | 4.4:-5128575 | None:intergenic |
| CATACATATCTCGGTGTCGA+AGG | 0.590867 | 4.4:-5125231 | None:intergenic |
| CAGCCATAGCTAAACTTGGA+AGG | 0.591100 | 4.4:-5130697 | None:intergenic |
| GTCAGTTTGCTTTCATCACG+AGG | 0.594201 | 4.4:+5126013 | MS.gene89710:CDS |
| AGTTAACACTGCTCCTGAAG+CGG | 0.597466 | 4.4:-5132568 | None:intergenic |
| GTGAGGAATCGGAAGTGGAG+AGG | 0.599481 | 4.4:-5124063 | None:intergenic |
| GTAATTATTATCCTTACAAG+GGG | 0.600916 | 4.4:+5126264 | MS.gene89710:CDS |
| TTCCAGCACACTTTGTTGTG+TGG | 0.601925 | 4.4:+5125835 | MS.gene89710:CDS |
| GGAAGTGTTCGAATTACCAT+AGG | 0.602434 | 4.4:-5125210 | None:intergenic |
| TTCCGCAAAACTGAGTTGCT+AGG | 0.602618 | 4.4:-5131617 | None:intergenic |
| TGAGCTCCTTGCAGAAGGCA+TGG | 0.606273 | 4.4:+5130523 | MS.gene89710:CDS |
| TGGCTTTACAAACCTTGTCA+AGG | 0.607388 | 4.4:-5130850 | None:intergenic |
| TGACGGTGGTTGGGTGAAAG+CGG | 0.608986 | 4.4:-5123990 | None:intergenic |
| GAGACAAGCTAATCAAACGT+TGG | 0.609590 | 4.4:-5127743 | None:intergenic |
| ACAACTAACGTGGAAAGCCT+AGG | 0.610198 | 4.4:-5130443 | None:intergenic |
| AAGTCCAGATTCTGAGGACA+TGG | 0.610676 | 4.4:+5126217 | MS.gene89710:CDS |
| CAGAAGGCATGGAGAGCACG+TGG | 0.611872 | 4.4:+5130534 | MS.gene89710:CDS |
| TCTTGGACCAGACTAGCAGT+TGG | 0.614722 | 4.4:+5131713 | MS.gene89710:CDS |
| TGAGTCCATGGAGAGTGGTG+AGG | 0.618974 | 4.4:+5127291 | MS.gene89710:CDS |
| CCACCAAATGATGGAGCCAT+CGG | 0.619259 | 4.4:-5124038 | None:intergenic |
| ACAAGGCATGGTAATGAACT+GGG | 0.621865 | 4.4:+5134512 | MS.gene89710:CDS |
| TGAAAGTGAGCATGTACGTA+TGG | 0.621981 | 4.4:+5130094 | MS.gene89710:CDS |
| TGGTGCAAGTCCAGATTCTG+AGG | 0.622634 | 4.4:+5126211 | MS.gene89710:CDS |
| GAGCACGTGGAAAGAATGCA+TGG | 0.623245 | 4.4:+5130547 | MS.gene89710:CDS |
| GCCTGACCATATGCACGCAA+CGG | 0.623933 | 4.4:-5123930 | None:intergenic |
| AAGAATGAGTCCATGGAGAG+TGG | 0.624355 | 4.4:+5127286 | MS.gene89710:CDS |
| GCAGAGTCTCAAGAGAAACA+AGG | 0.625151 | 4.4:-5126721 | None:intergenic |
| ATTAGCTTCGGGTCTGCAGG+GGG | 0.625378 | 4.4:+5127531 | MS.gene89710:CDS |
| CTGAGTAGACTCAAACCAGT+TGG | 0.626069 | 4.4:-5126147 | None:intergenic |
| TCTGGTATGAGAAACTGAGC+CGG | 0.626357 | 4.4:+5133837 | MS.gene89710:CDS |
| ACACCTGATACCTATGAAAG+CGG | 0.626932 | 4.4:+5125804 | MS.gene89710:CDS |
| AGGAATCCAAGATACTGACT+TGG | 0.627128 | 4.4:+5130300 | MS.gene89710:CDS |
| ATATGTGGTCTCCATAGTAA+CGG | 0.628722 | 4.4:-5126038 | None:intergenic |
| AGCGACCAAATTGTGATATG+TGG | 0.629170 | 4.4:-5126053 | None:intergenic |
| CAAGGTAATGCATCATCATG+TGG | 0.629734 | 4.4:+5126607 | MS.gene89710:CDS |
| TTGGTTAGAGACAAACATCT+GGG | 0.633442 | 4.4:+5130218 | MS.gene89710:CDS |
| AACATGGGCTTATGATTAGG+TGG | 0.634033 | 4.4:+5133798 | MS.gene89710:CDS |
| CAGAGTCTCAAGAGAAACAA+GGG | 0.635882 | 4.4:-5126720 | None:intergenic |
| ATGGGCTTATGATTAGGTGG+TGG | 0.637208 | 4.4:+5133801 | MS.gene89710:CDS |
| TTCTTGAAAGTGATGATATG+GGG | 0.638015 | 4.4:+5125778 | MS.gene89710:CDS |
| CTACTGACATAAACTTAATG+GGG | 0.638526 | 4.4:-5125407 | None:intergenic |
| AATTTAAATTACCTCAAGAG+TGG | 0.639539 | 4.4:-5127593 | None:intergenic |
| AATGGAAATTTATCACTGTG+TGG | 0.639668 | 4.4:-5125546 | None:intergenic |
| AATGCCCATCTGAAAAGAAG+AGG | 0.640457 | 4.4:-5125725 | None:intergenic |
| TAAAAGGCGGCAGGTGACGG+TGG | 0.640886 | 4.4:-5124004 | None:intergenic |
| AGGATGCCCTGTCAAAGATG+GGG | 0.641142 | 4.4:-5126654 | None:intergenic |
| CCAGAACCCGTTTAAAAGTG+CGG | 0.641314 | 4.4:-5126526 | None:intergenic |
| AGATGAGCCTCGTGATTGTG+TGG | 0.642098 | 4.4:+5125509 | MS.gene89710:CDS |
| ATTCTAACCTGTAACGAAGG+TGG | 0.644013 | 4.4:-5128572 | None:intergenic |
| TTGGGTGAAAGCGGCAACGG+CGG | 0.644703 | 4.4:-5123981 | None:intergenic |
| GACTCATTGACAGCAACCAT+AGG | 0.647561 | 4.4:-5131692 | None:intergenic |
| AATATCAATTTGAAGCAGCA+GGG | 0.650134 | 4.4:+5127325 | MS.gene89710:CDS |
| CCATAATCCAGAAACTTCAG+AGG | 0.650952 | 4.4:+5127372 | MS.gene89710:CDS |
| ACAAGGAATGTCCCAAGACG+AGG | 0.650953 | 4.4:+5130280 | MS.gene89710:CDS |
| GATTCTCACCTAATTCATCC+CGG | 0.651461 | 4.4:+5133912 | MS.gene89710:CDS |
| TGCAATGAGATCATTGACGA+TGG | 0.651762 | 4.4:+5127710 | MS.gene89710:CDS |
| GCTGGCCATAATGCTTGACC+GGG | 0.658543 | 4.4:-5133930 | None:intergenic |
| CAATGCAGAATGATCAGTGA+TGG | 0.659198 | 4.4:+5126113 | MS.gene89710:CDS |
| TTTGCAGCAAGTTAAAGCGG+TGG | 0.659981 | 4.4:+5124987 | MS.gene89710:intron |
| GATAAACTCGGACAATTGTG+CGG | 0.660053 | 4.4:+5126089 | MS.gene89710:CDS |
| GGATGCCCTGTCAAAGATGG+GGG | 0.660361 | 4.4:-5126653 | None:intergenic |
| CCAGCAGGAATCTCGGAATG+GGG | 0.660613 | 4.4:-5125921 | None:intergenic |
| AACGGCGGTTACTTTGTGAG+CGG | 0.661182 | 4.4:-5123966 | None:intergenic |
| ATTGCATAGAGGTAGAGGAA+TGG | 0.663865 | 4.4:-5130153 | None:intergenic |
| TAGTGATACCATGATTGGAG+AGG | 0.666717 | 4.4:+5125686 | MS.gene89710:CDS |
| TTAGGTGAGAATCCCTCCCA+AGG | 0.668091 | 4.4:-5133902 | None:intergenic |
| TTTGGCCCAGTACCTTGACA+AGG | 0.669311 | 4.4:+5130838 | MS.gene89710:CDS |
| ACCATAGGAGTACCAACCCA+AGG | 0.669949 | 4.4:-5125195 | None:intergenic |
| ATCCTAGTCTTGTAAAACCT+AGG | 0.678142 | 4.4:+5130426 | MS.gene89710:CDS |
| GGACCCGGCGGTGTAAAAGG+CGG | 0.678457 | 4.4:-5124017 | None:intergenic |
| AACTAAGAGACACAATACCA+GGG | 0.679440 | 4.4:-5127231 | None:intergenic |
| TAATGGATGAACAACTAACG+TGG | 0.684490 | 4.4:-5130453 | None:intergenic |
| ACTCTCATAAGGATTATGCG+TGG | 0.689061 | 4.4:+5130803 | MS.gene89710:CDS |
| CATAATCCAGAAACTTCAGA+GGG | 0.690652 | 4.4:+5127373 | MS.gene89710:CDS |
| TGATAAGTGATATGAAACTG+AGG | 0.692995 | 4.4:+5127491 | MS.gene89710:CDS |
| CGTATATGGGATCTTGACAG+TGG | 0.693679 | 4.4:+5126575 | MS.gene89710:CDS |
| CCCATTCTAATCGATAAGAG+AGG | 0.695297 | 4.4:-5134466 | None:intergenic |
| GATGGAGCCATCGGACCCGG+CGG | 0.701702 | 4.4:-5124029 | None:intergenic |
| AAAGCGGTGGGAGTGTTGTG+TGG | 0.703210 | 4.4:+5125000 | MS.gene89710:CDS |
| GGTGAGAATCCCTCCCAAGG+AGG | 0.708180 | 4.4:-5133899 | None:intergenic |
| TTTGAGTCTACTCAGCTCAA+CGG | 0.711173 | 4.4:+5126155 | MS.gene89710:CDS |
| AAAATATCTCCAATTAGACG+AGG | 0.718741 | 4.4:-5130581 | None:intergenic |
| GAGTCAACAACGATACCATG+TGG | 0.721881 | 4.4:-5130784 | None:intergenic |
| TGTGTGTGGAGTAAAAGCAG+TGG | 0.724362 | 4.4:+5125144 | MS.gene89710:CDS |
| TGAAACTGCGAATACCGGTG+AGG | 0.733745 | 4.4:-5124080 | None:intergenic |
| GAGCTTTCCACACAATCACG+AGG | 0.736753 | 4.4:-5125516 | None:intergenic |
| AGCAAACTAGGAAGTCCTGG+TGG | 0.738244 | 4.4:-5132537 | None:intergenic |
| ATAGGAGTACCAACCCAAGG+TGG | 0.764195 | 4.4:-5125192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5123917 | 5134550 | 5123917 | ID=MS.gene89710 |
| chr4.4 | mRNA | 5123917 | 5134550 | 5123917 | ID=MS.gene89710.t1;Parent=MS.gene89710 |
| chr4.4 | exon | 5123917 | 5124087 | 5123917 | ID=MS.gene89710.t1.exon1;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5123917 | 5124087 | 5123917 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5124994 | 5127603 | 5124994 | ID=MS.gene89710.t1.exon2;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5124994 | 5127603 | 5124994 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5127684 | 5127787 | 5127684 | ID=MS.gene89710.t1.exon3;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5127684 | 5127787 | 5127684 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5128517 | 5128586 | 5128517 | ID=MS.gene89710.t1.exon4;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5128517 | 5128586 | 5128517 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5130071 | 5130859 | 5130071 | ID=MS.gene89710.t1.exon5;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5130071 | 5130859 | 5130071 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5131587 | 5131789 | 5131587 | ID=MS.gene89710.t1.exon6;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5131587 | 5131789 | 5131587 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5132503 | 5132629 | 5132503 | ID=MS.gene89710.t1.exon7;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5132503 | 5132629 | 5132503 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5133779 | 5133985 | 5133779 | ID=MS.gene89710.t1.exon8;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5133779 | 5133985 | 5133779 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| chr4.4 | exon | 5134407 | 5134550 | 5134407 | ID=MS.gene89710.t1.exon9;Parent=MS.gene89710.t1 |
| chr4.4 | CDS | 5134407 | 5134550 | 5134407 | ID=cds.MS.gene89710.t1;Parent=MS.gene89710.t1 |
| Gene Sequence |
| Protein sequence |
