Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06013.t1 | XP_024629136.1 | 96.3 | 1437 | 50 | 2 | 1 | 1435 | 1 | 1436 | 0.00E+00 | 2751.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06013.t1 | Q9Y4E6 | 27.5 | 178 | 113 | 7 | 549 | 722 | 462 | 627 | 5.6e-12 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06013.t1 | A0A396GQG8 | 96.3 | 1437 | 50 | 2 | 1 | 1435 | 1 | 1436 | 0.0e+00 | 2751.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051795 | MS.gene06013 | 0.82299 | 1.76E-53 | -1.69E-46 |
| MS.gene051796 | MS.gene06013 | 0.801202 | 1.01E-48 | -1.69E-46 |
| MS.gene051826 | MS.gene06013 | 0.820742 | 5.84E-53 | -1.69E-46 |
| MS.gene056301 | MS.gene06013 | 0.84229 | 2.83E-58 | -1.69E-46 |
| MS.gene06013 | MS.gene060347 | 0.82543 | 4.71E-54 | -1.69E-46 |
| MS.gene06013 | MS.gene24853 | 0.843093 | 1.73E-58 | -1.69E-46 |
| MS.gene06013 | MS.gene32949 | 0.803681 | 3.10E-49 | -1.69E-46 |
| MS.gene06013 | MS.gene38383 | 0.800449 | 1.43E-48 | -1.69E-46 |
| MS.gene06013 | MS.gene38567 | 0.853605 | 2.14E-61 | -1.69E-46 |
| MS.gene06013 | MS.gene39937 | 0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene06013 | MS.gene50553 | 0.822588 | 2.19E-53 | -1.69E-46 |
| MS.gene06013 | MS.gene55746 | 0.991827 | 9.19E-190 | -1.69E-46 |
| MS.gene06013 | MS.gene70796 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene06013 | MS.gene89710 | 0.918388 | 1.66E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06013.t1 | MTR_8g098950 | 94.711 | 1437 | 40 | 4 | 1 | 1435 | 1 | 1403 | 0.0 | 2737 |
| MS.gene06013.t1 | MTR_8g098950 | 97.656 | 1365 | 29 | 2 | 1 | 1363 | 1 | 1364 | 0.0 | 2730 |
| MS.gene06013.t1 | MTR_8g098950 | 96.811 | 972 | 29 | 1 | 1 | 970 | 1 | 972 | 0.0 | 1943 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06013.t1 | AT4G11270 | 51.867 | 1473 | 599 | 27 | 1 | 1432 | 1 | 1404 | 0.0 | 1367 |
| MS.gene06013.t1 | AT4G11270 | 51.867 | 1473 | 599 | 27 | 1 | 1432 | 1 | 1404 | 0.0 | 1367 |
Find 321 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGCCCTCTGAAGTTTC+TGG | 0.111846 | 4.1:-5252514 | None:intergenic |
| CAGATGCTGTTGACCAAATT+TGG | 0.121178 | 4.1:-5255886 | None:intergenic |
| ATGGTGATATATTATATATT+TGG | 0.180103 | 4.1:+5251987 | MS.gene06013:CDS |
| GGTGGTCACTGGGATCTTTC+TGG | 0.183894 | 4.1:+5258957 | MS.gene06013:CDS |
| GTGTTTGTAGCTGATTCTTA+TGG | 0.199424 | 4.1:+5250597 | MS.gene06013:CDS |
| GACTACTGACATAAACTTAA+TGG | 0.218019 | 4.1:-5250544 | None:intergenic |
| CAAGTTCTCTGTATGATTTA+AGG | 0.220102 | 4.1:-5252188 | None:intergenic |
| ACACCTTATGCTGTCGTATA+TGG | 0.238602 | 4.1:+5251464 | MS.gene06013:CDS |
| TGTCTTTGTCAAACACATTA+TGG | 0.242683 | 4.1:+5251956 | MS.gene06013:CDS |
| CCAAACAGAGAAGATGAATT+TGG | 0.243896 | 4.1:-5252301 | None:intergenic |
| AAGCATTATGGCCAGCATTT+TGG | 0.247182 | 4.1:+5259075 | MS.gene06013:CDS |
| TGTAACAATGATAAAGGTTT+TGG | 0.268383 | 4.1:+5257641 | MS.gene06013:CDS |
| CCTCTGAAGTTTCTGGATTA+TGG | 0.268425 | 4.1:-5252507 | None:intergenic |
| TATGAAGCCACCTTCGTTAC+AGG | 0.268660 | 4.1:+5253700 | MS.gene06013:CDS |
| TGGATTGCACAATTCGTATA+TGG | 0.271879 | 4.1:+5251696 | MS.gene06013:CDS |
| GACATAGCCAACTTCATTAA+TGG | 0.273932 | 4.1:-5255605 | None:intergenic |
| TATGATTAGGTGGTGGTCAC+TGG | 0.280148 | 4.1:+5258946 | MS.gene06013:CDS |
| GTTTGGGAGTTTGTATTAAT+TGG | 0.281377 | 4.1:-5255326 | None:intergenic |
| GCGTGGTTCTCCAAGATATT+TGG | 0.289352 | 4.1:+5255955 | MS.gene06013:CDS |
| CCAAATTCATCTTCTCTGTT+TGG | 0.292682 | 4.1:+5252301 | MS.gene06013:CDS |
| ATGCTTGACCGGGATGAATT+AGG | 0.293876 | 4.1:-5259058 | None:intergenic |
| TGTTCTTGAAAGTGATGATA+TGG | 0.300882 | 4.1:+5250911 | MS.gene06013:CDS |
| GTCATTATCAACCTGATATA+AGG | 0.304019 | 4.1:+5251078 | MS.gene06013:CDS |
| CGGAACATGGGCTTATGATT+AGG | 0.304377 | 4.1:+5258933 | MS.gene06013:CDS |
| TTGCTCACCGCAACCGCTTC+AGG | 0.305269 | 4.1:+5257693 | MS.gene06013:CDS |
| ATGCAGTGTAACAATGATAA+AGG | 0.306296 | 4.1:+5257635 | MS.gene06013:intron |
| TTGCTGCTGCACTGGCTATC+TGG | 0.307446 | 4.1:+5255537 | MS.gene06013:CDS |
| AACGAAGGTGGCTTCATATC+TGG | 0.312972 | 4.1:-5253695 | None:intergenic |
| ATCGGACCCGGCGGTGTAAA+AGG | 0.317627 | 4.1:-5249151 | None:intergenic |
| TTCATCCCGGTCAAGCATTA+TGG | 0.318357 | 4.1:+5259063 | MS.gene06013:CDS |
| CAGTGATTGAAAGCCAAATT+TGG | 0.319590 | 4.1:+5255873 | MS.gene06013:CDS |
| TCTGAGATTCCTCGTCTAAT+TGG | 0.320800 | 4.1:+5255707 | MS.gene06013:CDS |
| TTTGAAGCAGCAGGGTGTTC+AGG | 0.324441 | 4.1:+5252468 | MS.gene06013:CDS |
| ACTACTGACATAAACTTAAT+GGG | 0.326146 | 4.1:-5250543 | None:intergenic |
| GAATTTCCTTTACCTGCATT+AGG | 0.327129 | 4.1:-5252271 | None:intergenic |
| CTGTCCATGTCCTCAGAATC+TGG | 0.333213 | 4.1:-5251356 | None:intergenic |
| GCAAATATGTATCCACAATA+AGG | 0.333561 | 4.1:-5250476 | None:intergenic |
| AGGTTAACAATGCAAGCATT+AGG | 0.333935 | 4.1:+5256885 | MS.gene06013:CDS |
| TGAAAAGCAGCTTAATTTGC+AGG | 0.337493 | 4.1:+5259102 | MS.gene06013:CDS |
| AACTAATATTTGTTCCTCCT+TGG | 0.340075 | 4.1:+5259023 | MS.gene06013:CDS |
| CATCTTTGACAGGGCATCCT+TGG | 0.341731 | 4.1:+5251792 | MS.gene06013:CDS |
| GTCTCTAACCAAGTCAGTTT+GGG | 0.349797 | 4.1:-5255342 | None:intergenic |
| TACAGGTTCTGTACTTTGTT+TGG | 0.354839 | 4.1:+5251607 | MS.gene06013:CDS |
| AGGCGGCAGGTGACGGTGGT+TGG | 0.357011 | 4.1:-5249131 | None:intergenic |
| ACTAATATTTGTTCCTCCTT+GGG | 0.359112 | 4.1:+5259024 | MS.gene06013:CDS |
| TTGCCGCTTTCATAGGTATC+AGG | 0.359869 | 4.1:-5250942 | None:intergenic |
| GGTCCGATGGCTCCATCATT+TGG | 0.360319 | 4.1:+5249166 | MS.gene06013:CDS |
| ATCACGAGGAACCGTTACTA+TGG | 0.362739 | 4.1:+5251162 | MS.gene06013:CDS |
| CACATCTCCAACTGCTAGTC+TGG | 0.367058 | 4.1:-5256855 | None:intergenic |
| TCATTGACATTGTCATTTCC+TGG | 0.367296 | 4.1:+5252697 | MS.gene06013:CDS |
| TGTAGCGGTGGTGGAGATTT+CGG | 0.367408 | 4.1:+5259684 | MS.gene06013:CDS |
| AAGTTCTCTGTATGATTTAA+GGG | 0.369030 | 4.1:-5252187 | None:intergenic |
| TGGTGATATATTATATATTT+GGG | 0.369140 | 4.1:+5251988 | MS.gene06013:CDS |
| TGCGAATACCGGTGAGGAAT+CGG | 0.370374 | 4.1:-5249205 | None:intergenic |
| TGTCTCTAACCAAGTCAGTT+TGG | 0.370930 | 4.1:-5255343 | None:intergenic |
| TCCTTTACCTGCATTAGGTT+TGG | 0.374018 | 4.1:-5252266 | None:intergenic |
| ATTAGTATGAATTCTATATC+TGG | 0.375020 | 4.1:+5252088 | MS.gene06013:CDS |
| AATCAAGTTGCCGCTTTCAT+AGG | 0.377504 | 4.1:-5250949 | None:intergenic |
| TGTTTGTAGCTGATTCTTAT+GGG | 0.377708 | 4.1:+5250598 | MS.gene06013:CDS |
| TACAAGGCATGGTAATGAAC+TGG | 0.379427 | 4.1:+5259649 | MS.gene06013:CDS |
| GCAGTAAGTATTCTTCAAAA+AGG | 0.381772 | 4.1:-5252546 | None:intergenic |
| CATTATTGTTGCTGCTGCAC+TGG | 0.382714 | 4.1:+5255529 | MS.gene06013:CDS |
| AGGCATGCTTCCAGAGTTCC+TGG | 0.384960 | 4.1:+5256774 | MS.gene06013:CDS |
| TTTAAACGGGTTCTGGTGTC+TGG | 0.386494 | 4.1:+5251668 | MS.gene06013:CDS |
| AATTCTGTTAATGATGAGTT+AGG | 0.387201 | 4.1:+5250411 | MS.gene06013:CDS |
| AATAAGGATAGTAGATTTAG+AGG | 0.387251 | 4.1:-5250460 | None:intergenic |
| CACTGATCATTCTGCATTGA+CGG | 0.387967 | 4.1:-5251244 | None:intergenic |
| TTCTAGCCAAGTCAGTATCT+TGG | 0.389653 | 4.1:-5255441 | None:intergenic |
| AACCTTGCATCATCAACTAT+TGG | 0.391860 | 4.1:-5252154 | None:intergenic |
| GGTTCTGGTGTCTGGCAGTA+TGG | 0.393700 | 4.1:+5251676 | MS.gene06013:CDS |
| TATCTTGGATTCCTCGTCTT+GGG | 0.395144 | 4.1:-5255426 | None:intergenic |
| GGTTAACAATGCAAGCATTA+GGG | 0.397716 | 4.1:+5256886 | MS.gene06013:CDS |
| AATCATATGAAGTGCAAGAT+TGG | 0.398976 | 4.1:+5255462 | MS.gene06013:CDS |
| GGCGGCAGGTGACGGTGGTT+GGG | 0.399914 | 4.1:-5249130 | None:intergenic |
| AGCGACTGCTTTCTTTCAGT+TGG | 0.406630 | 4.1:+5251815 | MS.gene06013:CDS |
| TATATTAGCTTCGGGTCTGC+AGG | 0.408303 | 4.1:+5252663 | MS.gene06013:CDS |
| ATTCTATACCCGGAATTTCA+TGG | 0.409799 | 4.1:+5253664 | MS.gene06013:CDS |
| AAAACAGACAACCTTATATC+AGG | 0.411061 | 4.1:-5251089 | None:intergenic |
| TACAAACCTTGTCAAGGTAC+TGG | 0.413998 | 4.1:-5255979 | None:intergenic |
| GATACTATCTTCCCCTTGTA+AGG | 0.418265 | 4.1:-5251410 | None:intergenic |
| GAAGGATAGTTCACGTGTCC+AGG | 0.420521 | 4.1:-5251896 | None:intergenic |
| AAACTTCAGAGGGCCACAAT+TGG | 0.420585 | 4.1:+5252518 | MS.gene06013:CDS |
| CACTGCTCCTGAAGCGGTTG+CGG | 0.422040 | 4.1:-5257700 | None:intergenic |
| CTAGAGATTAAATCAACCTT+TGG | 0.424270 | 4.1:+5251323 | MS.gene06013:CDS |
| TGTTTCTCTTGAGACTCTGC+AGG | 0.424988 | 4.1:+5251859 | MS.gene06013:CDS |
| GCAGATCCGTTGCGTGCATA+TGG | 0.425413 | 4.1:+5249055 | MS.gene06013:CDS |
| GGAGCTGTACTTCTCGTTCA+TGG | 0.426958 | 4.1:-5255627 | None:intergenic |
| ACCAGCAGGAATCTCGGAAT+GGG | 0.427475 | 4.1:-5251057 | None:intergenic |
| GGAGACCACATATCACAATT+TGG | 0.430673 | 4.1:+5251183 | MS.gene06013:CDS |
| GGCAGAGGGATTCAATGGTC+TGG | 0.432604 | 4.1:+5250719 | MS.gene06013:CDS |
| TTTGAATTGCATAGAGGTAG+AGG | 0.436014 | 4.1:-5255293 | None:intergenic |
| AACTTCTTTGAAAGTTGTCC+AGG | 0.439895 | 4.1:-5256792 | None:intergenic |
| TGTTCATCCATTAATGAAGT+TGG | 0.439950 | 4.1:+5255598 | MS.gene06013:CDS |
| TAGAAGAAAATTGCCACCTT+GGG | 0.440055 | 4.1:+5250314 | MS.gene06013:CDS |
| AATGGGCAAGTGCATTTGAT+AGG | 0.443101 | 4.1:-5252343 | None:intergenic |
| AATCCATATACGACAGCATA+AGG | 0.443707 | 4.1:-5251467 | None:intergenic |
| GGGACGTAAAGACAGGTTCC+CGG | 0.445283 | 4.1:+5252008 | MS.gene06013:CDS |
| TGCAAGGAGCTCAGCAGCAG+TGG | 0.445762 | 4.1:-5255648 | None:intergenic |
| TGCTTCAAATTGATATTCAC+TGG | 0.446387 | 4.1:-5252454 | None:intergenic |
| TTTCATGGAAATTTATCCAT+TGG | 0.449262 | 4.1:+5250519 | MS.gene06013:CDS |
| CAGGTGGAAAGAATGTTTCC+TGG | 0.454461 | 4.1:+5251878 | MS.gene06013:CDS |
| ATAATGTGTTTGACAAAGAC+AGG | 0.456171 | 4.1:-5251954 | None:intergenic |
| TGCTGGCCATAATGCTTGAC+CGG | 0.457096 | 4.1:-5259069 | None:intergenic |
| TATCGTTGTTGACTCTCATA+AGG | 0.457374 | 4.1:+5255927 | MS.gene06013:CDS |
| CAGAATTTCTCGGGACATAC+AGG | 0.458238 | 4.1:+5251590 | MS.gene06013:CDS |
| GAGATTAAATCAACCTTTGG+TGG | 0.458871 | 4.1:+5251326 | MS.gene06013:CDS |
| CTTGCCCTCACCACTCTCCA+TGG | 0.459379 | 4.1:-5252431 | None:intergenic |
| TTGATAAGTGCTTGTTGTGA+TGG | 0.461419 | 4.1:+5250249 | MS.gene06013:CDS |
| AGGTACTGGGCCAAATATCT+TGG | 0.464340 | 4.1:-5255965 | None:intergenic |
| TGAAAGTTGTCCAGGAACTC+TGG | 0.464546 | 4.1:-5256784 | None:intergenic |
| ACGGGCCACTCAACTCTACT+TGG | 0.465336 | 4.1:-5255742 | None:intergenic |
| CAAGGATGCCCTGTCAAAGA+TGG | 0.465347 | 4.1:-5251791 | None:intergenic |
| GCGGTTGCGGTGAGCAAACT+AGG | 0.466009 | 4.1:-5257687 | None:intergenic |
| GTTTCTGGATTATGGTGGCT+TGG | 0.468948 | 4.1:-5252499 | None:intergenic |
| TCTCCTTCCAAGTTTAGCTA+TGG | 0.470299 | 4.1:+5255829 | MS.gene06013:CDS |
| TCCCACGTATGAGCCGCTCC+CGG | 0.471481 | 4.1:-5252027 | None:intergenic |
| TTCTATTAAGCAGACTTTGG+TGG | 0.471664 | 4.1:+5255802 | MS.gene06013:CDS |
| TTTGTATTAATTGGCTCGCT+AGG | 0.472607 | 4.1:-5255317 | None:intergenic |
| TACAAACTCCCAAACTGACT+TGG | 0.473976 | 4.1:+5255334 | MS.gene06013:CDS |
| TGCACACAAACAGAATTTCT+CGG | 0.474513 | 4.1:+5251580 | MS.gene06013:CDS |
| CTAGCAGTTGGAGATGTGAT+TGG | 0.477963 | 4.1:+5256860 | MS.gene06013:CDS |
| AACTTCAGAGGGCCACAATT+GGG | 0.478612 | 4.1:+5252519 | MS.gene06013:CDS |
| TCCCGGGAGCGGCTCATACG+TGG | 0.478636 | 4.1:+5252025 | MS.gene06013:CDS |
| GTGTAAAAGGCGGCAGGTGA+CGG | 0.479927 | 4.1:-5249138 | None:intergenic |
| ACTGAAGCTCGTGCTGTTGG+TGG | 0.480415 | 4.1:+5250885 | MS.gene06013:CDS |
| AAGTAATTATTATCCTTACA+AGG | 0.483697 | 4.1:+5251397 | MS.gene06013:CDS |
| TTGTCTAGTGATACCATGAT+TGG | 0.485271 | 4.1:+5250816 | MS.gene06013:CDS |
| TCCGTTGCGTGCATATGGTC+AGG | 0.485556 | 4.1:+5249060 | MS.gene06013:CDS |
| GTATCTTGGATTCCTCGTCT+TGG | 0.486139 | 4.1:-5255427 | None:intergenic |
| CCCACGTATGAGCCGCTCCC+GGG | 0.486180 | 4.1:-5252026 | None:intergenic |
| TGGAATTTCTGTCAATGACT+TGG | 0.487011 | 4.1:-5255768 | None:intergenic |
| GGATTGCACAATTCGTATAT+GGG | 0.487288 | 4.1:+5251697 | MS.gene06013:CDS |
| TAAAGACAGGTTCCCGGGAG+CGG | 0.487760 | 4.1:+5252014 | MS.gene06013:CDS |
| GGACGTAAAGACAGGTTCCC+GGG | 0.487905 | 4.1:+5252009 | MS.gene06013:CDS |
| TCCAAACCTAATGCAGGTAA+AGG | 0.490326 | 4.1:+5252265 | MS.gene06013:CDS |
| CAAGATTGGATTTCTTGTGT+TGG | 0.491921 | 4.1:+5255476 | MS.gene06013:CDS |
| TCCACTGAAGCTCGTGCTGT+TGG | 0.492950 | 4.1:+5250882 | MS.gene06013:CDS |
| CTGCTTTCTTTCAGTTGGAG+AGG | 0.493151 | 4.1:+5251820 | MS.gene06013:CDS |
| CTTGGTTAGAGACAAACATC+TGG | 0.493314 | 4.1:+5255352 | MS.gene06013:CDS |
| TATATTTGGGACGTAAAGAC+AGG | 0.494778 | 4.1:+5252001 | MS.gene06013:CDS |
| ACACAGTGATAAATTTCCAT+TGG | 0.495230 | 4.1:+5250683 | MS.gene06013:CDS |
| ATGATTAGGTGGTGGTCACT+GGG | 0.496764 | 4.1:+5258947 | MS.gene06013:CDS |
| TACCGGTGAGGAATCGGAAG+TGG | 0.497309 | 4.1:-5249199 | None:intergenic |
| ACAAACCTTGTCAAGGTACT+GGG | 0.498377 | 4.1:-5255978 | None:intergenic |
| AGACAAGCTAATCAAACGTT+GGG | 0.500196 | 4.1:-5252877 | None:intergenic |
| ACCTTGGGTTGGTACTCCTA+TGG | 0.503645 | 4.1:+5250329 | MS.gene06013:CDS |
| GTTCTTGAAAGTGATGATAT+GGG | 0.504431 | 4.1:+5250912 | MS.gene06013:CDS |
| TTCCTAAGTACCTCTCCATC+TGG | 0.505656 | 4.1:-5257756 | None:intergenic |
| ATATCTGGCTCAGTGCTGAA+TGG | 0.506279 | 4.1:+5252103 | MS.gene06013:CDS |
| AGCTAATCAAACGTTGGGCA+AGG | 0.508381 | 4.1:-5252872 | None:intergenic |
| AAGGATGCCCTGTCAAAGAT+GGG | 0.508415 | 4.1:-5251790 | None:intergenic |
| AAAAGAAGCCTCTCCAATCA+TGG | 0.508781 | 4.1:-5250829 | None:intergenic |
| GAATATCAATTTGAAGCAGC+AGG | 0.509107 | 4.1:+5252459 | MS.gene06013:CDS |
| ATATCAGCCATAGCTAAACT+TGG | 0.510612 | 4.1:-5255836 | None:intergenic |
| TTTGTTGTGTGGAATAATAG+AGG | 0.512901 | 4.1:+5250981 | MS.gene06013:CDS |
| TTCCAATAGTTGATGATGCA+AGG | 0.515730 | 4.1:+5252152 | MS.gene06013:CDS |
| TTCCACACAACAAAGTGTGC+TGG | 0.517444 | 4.1:-5250972 | None:intergenic |
| GAGGTTCTCAGCAATAATCA+TGG | 0.518691 | 4.1:-5251438 | None:intergenic |
| TGGTTGCTGTCAATGAGTCT+TGG | 0.520949 | 4.1:+5256831 | MS.gene06013:CDS |
| CATAAACTTAATGGGGCCAA+TGG | 0.521443 | 4.1:-5250535 | None:intergenic |
| AATGATGGAGCCATCGGACC+CGG | 0.521661 | 4.1:-5249163 | None:intergenic |
| CATAAGCCCATGTTCCGAAA+AGG | 0.523106 | 4.1:-5258927 | None:intergenic |
| GAGACACAATACCAGGGAAT+GGG | 0.523210 | 4.1:-5252360 | None:intergenic |
| TAAATCTACTATCCTTATTG+TGG | 0.524443 | 4.1:+5250464 | MS.gene06013:CDS |
| GGCAAGTGCATTTGATAGGA+AGG | 0.526021 | 4.1:-5252339 | None:intergenic |
| TCTGTCAATGACTTGGAAGA+CGG | 0.526922 | 4.1:-5255761 | None:intergenic |
| CTGAAGTTTCTGGATTATGG+TGG | 0.527661 | 4.1:-5252504 | None:intergenic |
| CTTTAGCAGCATTCTATACC+CGG | 0.528236 | 4.1:+5253654 | MS.gene06013:CDS |
| TATTAAGCAGACTTTGGTGG+AGG | 0.528887 | 4.1:+5255805 | MS.gene06013:CDS |
| AGTTGTACGTGTATATCCTA+TGG | 0.532517 | 4.1:+5256811 | MS.gene06013:CDS |
| CTCCACTTCCGATTCCTCAC+CGG | 0.535514 | 4.1:+5249197 | MS.gene06013:CDS |
| AAACTAAGAGACACAATACC+AGG | 0.536773 | 4.1:-5252367 | None:intergenic |
| CTGTCAATGACTTGGAAGAC+GGG | 0.536784 | 4.1:-5255760 | None:intergenic |
| ATATTTGTTCCTCCTTGGGA+GGG | 0.537043 | 4.1:+5259028 | MS.gene06013:CDS |
| ATATTAGCTTCGGGTCTGCA+GGG | 0.537305 | 4.1:+5252664 | MS.gene06013:CDS |
| AGAGACACAATACCAGGGAA+TGG | 0.538089 | 4.1:-5252361 | None:intergenic |
| GGAGAGGGACCACCAAATGA+TGG | 0.538095 | 4.1:-5249178 | None:intergenic |
| TCAAGAGTGGCACTCTGACC+AGG | 0.538111 | 4.1:-5252715 | None:intergenic |
| AAATGCACTTGCCCATTCCC+TGG | 0.538664 | 4.1:+5252349 | MS.gene06013:CDS |
| TTGGATGCAAGTGGGCCACC+AGG | 0.538757 | 4.1:+5257660 | MS.gene06013:CDS |
| GTGAGCAAACTAGGAAGTCC+TGG | 0.539138 | 4.1:-5257678 | None:intergenic |
| TTAGCTATGGCTGATATACC+AGG | 0.539879 | 4.1:+5255842 | MS.gene06013:CDS |
| TGACAGTGGCAGTCTTATCA+AGG | 0.540306 | 4.1:+5251724 | MS.gene06013:CDS |
| CCGGCGGTGTAAAAGGCGGC+AGG | 0.541461 | 4.1:-5249144 | None:intergenic |
| AATATTTGTTCCTCCTTGGG+AGG | 0.543763 | 4.1:+5259027 | MS.gene06013:CDS |
| TGGTTGGGTGAAAGCGGCAA+CGG | 0.544413 | 4.1:-5249115 | None:intergenic |
| TCAGGTTGATAATGACCAGC+AGG | 0.544767 | 4.1:-5251071 | None:intergenic |
| AGAAAATTGCCACCTTGGGT+TGG | 0.545016 | 4.1:+5250318 | MS.gene06013:CDS |
| CAAAGAGCGAGATCAGTGAT+TGG | 0.546097 | 4.1:-5250168 | None:intergenic |
| CCCCATTCCGAGATTCCTGC+TGG | 0.546190 | 4.1:+5251056 | MS.gene06013:CDS |
| TCAGTCATACTTGAAATGCT+TGG | 0.546277 | 4.1:-5252232 | None:intergenic |
| ACCAACAGCACGAGCTTCAG+TGG | 0.546772 | 4.1:-5250883 | None:intergenic |
| TTCTCTTGAGACTCTGCAGG+TGG | 0.546773 | 4.1:+5251862 | MS.gene06013:CDS |
| GATTGGATTTCTTGTGTTGG+TGG | 0.547229 | 4.1:+5255479 | MS.gene06013:CDS |
| AATTCTTCCAAACCTAATGC+AGG | 0.549367 | 4.1:+5252259 | MS.gene06013:CDS |
| AGTAATTATTATCCTTACAA+GGG | 0.550751 | 4.1:+5251398 | MS.gene06013:CDS |
| GCACACAAACAGAATTTCTC+GGG | 0.550780 | 4.1:+5251581 | MS.gene06013:CDS |
| ACTCAAGTTCAGCAGCCAGC+AGG | 0.552271 | 4.1:+5252901 | MS.gene06013:CDS |
| TGCTCTCCATGCCTTCTGCA+AGG | 0.554637 | 4.1:-5255664 | None:intergenic |
| AGGTAGAGGAATGGCATGAG+AGG | 0.555578 | 4.1:-5255279 | None:intergenic |
| GACCAGCAGGAATCTCGGAA+TGG | 0.556587 | 4.1:-5251058 | None:intergenic |
| GCTGCTGAGCTCCTTGCAGA+AGG | 0.558394 | 4.1:+5255653 | MS.gene06013:CDS |
| CAAGCTATACATACATATCT+CGG | 0.558412 | 4.1:-5250375 | None:intergenic |
| GATTAGAATGGGTTGCGGAA+CGG | 0.559358 | 4.1:+5259615 | MS.gene06013:intron |
| ATCTGATTCACCTGTCCACA+TGG | 0.560688 | 4.1:+5255904 | MS.gene06013:CDS |
| TGAGGAATCGGAAGTGGAGA+GGG | 0.560802 | 4.1:-5249193 | None:intergenic |
| CCCGGGAGCGGCTCATACGT+GGG | 0.560836 | 4.1:+5252026 | MS.gene06013:CDS |
| CGACAGCATAAGGTGTAAAG+AGG | 0.564098 | 4.1:-5251457 | None:intergenic |
| ATAATGACCAGCAGGAATCT+CGG | 0.564893 | 4.1:-5251063 | None:intergenic |
| AAAAGCAACAATATTTCCAA+AGG | 0.565572 | 4.1:-5250763 | None:intergenic |
| ACTTTGTGAGCGGAAGGAAA+AGG | 0.565682 | 4.1:-5249087 | None:intergenic |
| AGTAGACTCAAACCAGTTGG+TGG | 0.566098 | 4.1:-5251279 | None:intergenic |
| AAGTCCAGATTCTGAGGACA+TGG | 0.566603 | 4.1:+5251352 | MS.gene06013:CDS |
| GTAGAAGAAAATTGCCACCT+TGG | 0.568595 | 4.1:+5250313 | MS.gene06013:CDS |
| CCGATGGCTCCATCATTTGG+TGG | 0.568770 | 4.1:+5249169 | MS.gene06013:CDS |
| GAGTCCATGGAGAGTGGTGA+GGG | 0.570233 | 4.1:+5252427 | MS.gene06013:CDS |
| TGGGAGATGTGATAGTAGAA+AGG | 0.570573 | 4.1:+5255372 | MS.gene06013:CDS |
| AAAGTACTTCTTACAAGGCA+TGG | 0.570990 | 4.1:+5259638 | MS.gene06013:CDS |
| TGGTCAGAGTGCCACTCTTG+AGG | 0.571821 | 4.1:+5252717 | MS.gene06013:CDS |
| GTGATGGTTTCTTGTGTGTG+TGG | 0.572650 | 4.1:+5250265 | MS.gene06013:CDS |
| AACAACGATACCATGTGGAC+AGG | 0.575250 | 4.1:-5255914 | None:intergenic |
| TTGCAGCAAGTTAAAGCGGT+GGG | 0.576860 | 4.1:+5250123 | MS.gene06013:intron |
| TTATCGATTAGAATGGGTTG+CGG | 0.577361 | 4.1:+5259610 | MS.gene06013:intron |
| ACACATTATGGAACTTCTGA+TGG | 0.578065 | 4.1:+5251968 | MS.gene06013:CDS |
| AGTAGAAAGGATATCTCCTA+AGG | 0.578788 | 4.1:+5255385 | MS.gene06013:CDS |
| AACGGAAAGTACTTCTTACA+AGG | 0.578988 | 4.1:+5259633 | MS.gene06013:CDS |
| GCGGTTACTTTGTGAGCGGA+AGG | 0.579440 | 4.1:-5249093 | None:intergenic |
| TCTACTCAGCTCAACGGACA+TGG | 0.584522 | 4.1:+5251296 | MS.gene06013:CDS |
| CATCAATTTGAAGATAAACT+CGG | 0.584706 | 4.1:+5251212 | MS.gene06013:CDS |
| GAAAGAAAGCAGTCGCTCCA+AGG | 0.584899 | 4.1:-5251809 | None:intergenic |
| TATTAGCTTCGGGTCTGCAG+GGG | 0.585377 | 4.1:+5252665 | MS.gene06013:CDS |
| GCTAATCAAACGTTGGGCAA+GGG | 0.586039 | 4.1:-5252871 | None:intergenic |
| ACTGGACAGGAACAAAGTTC+CGG | 0.587058 | 4.1:-5258994 | None:intergenic |
| AGTTGGAGATGTGATTGGAG+AGG | 0.587786 | 4.1:+5256865 | MS.gene06013:CDS |
| TTAGGGTTTATGATATGCAA+AGG | 0.589003 | 4.1:+5256903 | MS.gene06013:CDS |
| AAGATTCTAACCTGTAACGA+AGG | 0.589008 | 4.1:-5253710 | None:intergenic |
| CATACATATCTCGGTGTCGA+AGG | 0.590867 | 4.1:-5250366 | None:intergenic |
| CAGCCATAGCTAAACTTGGA+AGG | 0.591100 | 4.1:-5255832 | None:intergenic |
| GTCAGTTTGCTTTCATCACG+AGG | 0.594201 | 4.1:+5251148 | MS.gene06013:CDS |
| AGTTAACACTGCTCCTGAAG+CGG | 0.597466 | 4.1:-5257706 | None:intergenic |
| GTGAGGAATCGGAAGTGGAG+AGG | 0.599481 | 4.1:-5249194 | None:intergenic |
| GTAATTATTATCCTTACAAG+GGG | 0.600916 | 4.1:+5251399 | MS.gene06013:CDS |
| TTCCAGCACACTTTGTTGTG+TGG | 0.601925 | 4.1:+5250970 | MS.gene06013:CDS |
| GGAAGTGTTCGAATTACCAT+AGG | 0.602434 | 4.1:-5250345 | None:intergenic |
| TTCCGCAAAACTGAGTTGCT+AGG | 0.602618 | 4.1:-5256752 | None:intergenic |
| TGGTTCAAGTCCAGATTCTG+AGG | 0.602793 | 4.1:+5251346 | MS.gene06013:CDS |
| TGAGCTCCTTGCAGAAGGCA+TGG | 0.606273 | 4.1:+5255658 | MS.gene06013:CDS |
| ATCTGGACTTGAACCACCAA+AGG | 0.607116 | 4.1:-5251339 | None:intergenic |
| TGGCTTTACAAACCTTGTCA+AGG | 0.607388 | 4.1:-5255985 | None:intergenic |
| TGACGGTGGTTGGGTGAAAG+CGG | 0.608986 | 4.1:-5249121 | None:intergenic |
| GAGACAAGCTAATCAAACGT+TGG | 0.609590 | 4.1:-5252878 | None:intergenic |
| ACAACTAACGTGGAAAGCCT+AGG | 0.610198 | 4.1:-5255578 | None:intergenic |
| CAGAAGGCATGGAGAGCACG+TGG | 0.611872 | 4.1:+5255669 | MS.gene06013:CDS |
| TCTTGGACCAGACTAGCAGT+TGG | 0.614722 | 4.1:+5256848 | MS.gene06013:CDS |
| TGAGTCCATGGAGAGTGGTG+AGG | 0.618974 | 4.1:+5252426 | MS.gene06013:CDS |
| CCACCAAATGATGGAGCCAT+CGG | 0.619259 | 4.1:-5249169 | None:intergenic |
| ACAAGGCATGGTAATGAACT+GGG | 0.621865 | 4.1:+5259650 | MS.gene06013:CDS |
| TGAAAGTGAGCATGTACGTA+TGG | 0.621981 | 4.1:+5255229 | MS.gene06013:CDS |
| GAGCACGTGGAAAGAATGCA+TGG | 0.623245 | 4.1:+5255682 | MS.gene06013:CDS |
| GCCTGACCATATGCACGCAA+CGG | 0.623933 | 4.1:-5249061 | None:intergenic |
| AAGAATGAGTCCATGGAGAG+TGG | 0.624355 | 4.1:+5252421 | MS.gene06013:CDS |
| GCAGAGTCTCAAGAGAAACA+AGG | 0.625151 | 4.1:-5251856 | None:intergenic |
| ATTAGCTTCGGGTCTGCAGG+GGG | 0.625378 | 4.1:+5252666 | MS.gene06013:CDS |
| CTGAGTAGACTCAAACCAGT+TGG | 0.626069 | 4.1:-5251282 | None:intergenic |
| TCTGGTATGAGAAACTGAGC+CGG | 0.626357 | 4.1:+5258975 | MS.gene06013:CDS |
| ACACCTGATACCTATGAAAG+CGG | 0.626932 | 4.1:+5250939 | MS.gene06013:CDS |
| AGGAATCCAAGATACTGACT+TGG | 0.627128 | 4.1:+5255435 | MS.gene06013:CDS |
| ATATGTGGTCTCCATAGTAA+CGG | 0.628722 | 4.1:-5251173 | None:intergenic |
| AGCGACCAAATTGTGATATG+TGG | 0.629170 | 4.1:-5251188 | None:intergenic |
| CAAGGTAATGCATCATCATG+TGG | 0.629734 | 4.1:+5251742 | MS.gene06013:CDS |
| TTGGTTAGAGACAAACATCT+GGG | 0.633442 | 4.1:+5255353 | MS.gene06013:CDS |
| AACATGGGCTTATGATTAGG+TGG | 0.634033 | 4.1:+5258936 | MS.gene06013:CDS |
| CAGAGTCTCAAGAGAAACAA+GGG | 0.635882 | 4.1:-5251855 | None:intergenic |
| ATGGGCTTATGATTAGGTGG+TGG | 0.637208 | 4.1:+5258939 | MS.gene06013:CDS |
| TTCTTGAAAGTGATGATATG+GGG | 0.638015 | 4.1:+5250913 | MS.gene06013:CDS |
| CTACTGACATAAACTTAATG+GGG | 0.638526 | 4.1:-5250542 | None:intergenic |
| AATTTAAATTACCTCAAGAG+TGG | 0.639539 | 4.1:-5252728 | None:intergenic |
| AATGGAAATTTATCACTGTG+TGG | 0.639668 | 4.1:-5250681 | None:intergenic |
| AATGCCCATCTGAAAAGAAG+AGG | 0.640457 | 4.1:-5250860 | None:intergenic |
| TAAAAGGCGGCAGGTGACGG+TGG | 0.640886 | 4.1:-5249135 | None:intergenic |
| AGGATGCCCTGTCAAAGATG+GGG | 0.641142 | 4.1:-5251789 | None:intergenic |
| CCAGAACCCGTTTAAAAGTG+CGG | 0.641314 | 4.1:-5251661 | None:intergenic |
| AGATGAGCCTCGTGATTGTG+TGG | 0.642098 | 4.1:+5250644 | MS.gene06013:CDS |
| ATTCTAACCTGTAACGAAGG+TGG | 0.644013 | 4.1:-5253707 | None:intergenic |
| TTGGGTGAAAGCGGCAACGG+CGG | 0.644703 | 4.1:-5249112 | None:intergenic |
| GACTCATTGACAGCAACCAT+AGG | 0.647561 | 4.1:-5256827 | None:intergenic |
| AATATCAATTTGAAGCAGCA+GGG | 0.650134 | 4.1:+5252460 | MS.gene06013:CDS |
| CCATAATCCAGAAACTTCAG+AGG | 0.650952 | 4.1:+5252507 | MS.gene06013:CDS |
| ACAAGGAATGTCCCAAGACG+AGG | 0.650953 | 4.1:+5255415 | MS.gene06013:CDS |
| GATTCTCACCTAATTCATCC+CGG | 0.651461 | 4.1:+5259050 | MS.gene06013:CDS |
| TGCAATGAGATCATTGACGA+TGG | 0.651762 | 4.1:+5252845 | MS.gene06013:CDS |
| GCTGGCCATAATGCTTGACC+GGG | 0.658543 | 4.1:-5259068 | None:intergenic |
| CAATGCAGAATGATCAGTGA+TGG | 0.659198 | 4.1:+5251248 | MS.gene06013:CDS |
| TTTGCAGCAAGTTAAAGCGG+TGG | 0.659981 | 4.1:+5250122 | MS.gene06013:intron |
| GGATGCCCTGTCAAAGATGG+GGG | 0.660361 | 4.1:-5251788 | None:intergenic |
| CCAGCAGGAATCTCGGAATG+GGG | 0.660613 | 4.1:-5251056 | None:intergenic |
| AACGGCGGTTACTTTGTGAG+CGG | 0.661182 | 4.1:-5249097 | None:intergenic |
| ATTGCATAGAGGTAGAGGAA+TGG | 0.663865 | 4.1:-5255288 | None:intergenic |
| TAGTGATACCATGATTGGAG+AGG | 0.666717 | 4.1:+5250821 | MS.gene06013:CDS |
| TTAGGTGAGAATCCCTCCCA+AGG | 0.668091 | 4.1:-5259040 | None:intergenic |
| TTTGGCCCAGTACCTTGACA+AGG | 0.669311 | 4.1:+5255973 | MS.gene06013:CDS |
| ACCATAGGAGTACCAACCCA+AGG | 0.669949 | 4.1:-5250330 | None:intergenic |
| ATCCTAGTCTTGTAAAACCT+AGG | 0.678142 | 4.1:+5255561 | MS.gene06013:CDS |
| GGACCCGGCGGTGTAAAAGG+CGG | 0.678457 | 4.1:-5249148 | None:intergenic |
| AACTAAGAGACACAATACCA+GGG | 0.679440 | 4.1:-5252366 | None:intergenic |
| TAATGGATGAACAACTAACG+TGG | 0.684490 | 4.1:-5255588 | None:intergenic |
| ACTCTCATAAGGATTATGCG+TGG | 0.689061 | 4.1:+5255938 | MS.gene06013:CDS |
| CATAATCCAGAAACTTCAGA+GGG | 0.690652 | 4.1:+5252508 | MS.gene06013:CDS |
| TGATAAGTGATATGAAACTG+AGG | 0.692995 | 4.1:+5252626 | MS.gene06013:CDS |
| CGTATATGGGATCTTGACAG+TGG | 0.693679 | 4.1:+5251710 | MS.gene06013:CDS |
| GATGGAGCCATCGGACCCGG+CGG | 0.701702 | 4.1:-5249160 | None:intergenic |
| AAAGCGGTGGGAGTGTTGTG+TGG | 0.703210 | 4.1:+5250135 | MS.gene06013:CDS |
| GGTGAGAATCCCTCCCAAGG+AGG | 0.708180 | 4.1:-5259037 | None:intergenic |
| TTTGAGTCTACTCAGCTCAA+CGG | 0.711173 | 4.1:+5251290 | MS.gene06013:CDS |
| AAAATATCTCCAATTAGACG+AGG | 0.718741 | 4.1:-5255716 | None:intergenic |
| GAGTCAACAACGATACCATG+TGG | 0.721881 | 4.1:-5255919 | None:intergenic |
| TGTGTGTGGAGTAAAAGCAG+TGG | 0.724362 | 4.1:+5250279 | MS.gene06013:CDS |
| TGAAACTGCGAATACCGGTG+AGG | 0.733745 | 4.1:-5249211 | None:intergenic |
| GAGCTTTCCACACAATCACG+AGG | 0.736753 | 4.1:-5250651 | None:intergenic |
| AGCAAACTAGGAAGTCCTGG+TGG | 0.738244 | 4.1:-5257675 | None:intergenic |
| ATAGGAGTACCAACCCAAGG+TGG | 0.764195 | 4.1:-5250327 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 5249048 | 5259752 | 5249048 | ID=MS.gene06013 |
| chr4.1 | mRNA | 5249048 | 5259752 | 5249048 | ID=MS.gene06013.t1;Parent=MS.gene06013 |
| chr4.1 | exon | 5249048 | 5249218 | 5249048 | ID=MS.gene06013.t1.exon1;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5249048 | 5249218 | 5249048 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5250129 | 5252738 | 5250129 | ID=MS.gene06013.t1.exon2;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5250129 | 5252738 | 5250129 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5252819 | 5252922 | 5252819 | ID=MS.gene06013.t1.exon3;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5252819 | 5252922 | 5252819 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5253652 | 5253721 | 5253652 | ID=MS.gene06013.t1.exon4;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5253652 | 5253721 | 5253652 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5255206 | 5255994 | 5255206 | ID=MS.gene06013.t1.exon5;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5255206 | 5255994 | 5255206 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5256722 | 5256924 | 5256722 | ID=MS.gene06013.t1.exon6;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5256722 | 5256924 | 5256722 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5257641 | 5257767 | 5257641 | ID=MS.gene06013.t1.exon7;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5257641 | 5257767 | 5257641 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5258917 | 5259123 | 5258917 | ID=MS.gene06013.t1.exon8;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5258917 | 5259123 | 5258917 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| chr4.1 | exon | 5259621 | 5259752 | 5259621 | ID=MS.gene06013.t1.exon9;Parent=MS.gene06013.t1 |
| chr4.1 | CDS | 5259621 | 5259752 | 5259621 | ID=cds.MS.gene06013.t1;Parent=MS.gene06013.t1 |
| Gene Sequence |
| Protein sequence |
