Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89715.t1 | XP_013447102.1 | 98.2 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 1.80E-272 | 948 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89715.t1 | P92947 | 76.3 | 490 | 109 | 3 | 1 | 487 | 8 | 493 | 4.0e-217 | 755.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89715.t1 | A0A072U5J4 | 98.2 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 1.3e-272 | 948.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06007 | MS.gene89715 | 0.813638 | 2.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89715 | MS.gene003186 | PPI |
| MS.gene02843 | MS.gene89715 | PPI |
| MS.gene89715 | MS.gene02160 | PPI |
| MS.gene048313 | MS.gene89715 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89715.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 10 | 496 | 0.0 | 985 |
| MS.gene89715.t1 | MTR_8g098910 | 98.160 | 489 | 7 | 1 | 1 | 489 | 1 | 487 | 0.0 | 983 |
| MS.gene89715.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 10 | 455 | 0.0 | 903 |
| MS.gene89715.t1 | MTR_8g098910 | 97.991 | 448 | 7 | 1 | 1 | 448 | 1 | 446 | 0.0 | 902 |
| MS.gene89715.t1 | MTR_1g060620 | 46.387 | 429 | 205 | 8 | 49 | 464 | 2 | 418 | 2.25e-126 | 375 |
| MS.gene89715.t1 | MTR_7g034715 | 45.047 | 424 | 212 | 9 | 55 | 469 | 7 | 418 | 6.88e-125 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89715.t1 | AT1G63940 | 76.327 | 490 | 109 | 3 | 1 | 487 | 1 | 486 | 0.0 | 759 |
| MS.gene89715.t1 | AT1G63940 | 76.327 | 490 | 109 | 3 | 1 | 487 | 8 | 493 | 0.0 | 759 |
| MS.gene89715.t1 | AT1G63940 | 75.510 | 490 | 109 | 4 | 1 | 487 | 1 | 482 | 0.0 | 745 |
| MS.gene89715.t1 | AT1G63940 | 75.481 | 416 | 95 | 3 | 1 | 413 | 1 | 412 | 0.0 | 634 |
| MS.gene89715.t1 | AT3G52880 | 44.601 | 426 | 211 | 8 | 49 | 461 | 2 | 415 | 1.58e-118 | 355 |
| MS.gene89715.t1 | AT5G03630 | 44.318 | 440 | 220 | 8 | 54 | 480 | 8 | 435 | 1.07e-116 | 350 |
| MS.gene89715.t1 | AT3G27820 | 43.990 | 416 | 214 | 8 | 55 | 463 | 7 | 410 | 1.98e-112 | 341 |
| MS.gene89715.t1 | AT3G52880 | 44.634 | 410 | 202 | 8 | 65 | 461 | 50 | 447 | 2.40e-112 | 340 |
| MS.gene89715.t1 | AT3G09940 | 40.633 | 411 | 216 | 10 | 69 | 464 | 23 | 420 | 3.68e-103 | 316 |
| MS.gene89715.t1 | AT3G09940 | 40.389 | 411 | 209 | 11 | 69 | 464 | 23 | 412 | 4.05e-99 | 305 |
| MS.gene89715.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.48e-11 | 66.2 |
| MS.gene89715.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.48e-11 | 66.2 |
| MS.gene89715.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.48e-11 | 66.2 |
| MS.gene89715.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.48e-11 | 66.2 |
| MS.gene89715.t1 | AT1G48030 | 27.000 | 200 | 124 | 8 | 161 | 351 | 174 | 360 | 2.48e-11 | 66.2 |
Find 121 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGAGAAACGGTTGAAAT+TGG | 0.238262 | 4.4:-5254810 | MS.gene89715:CDS |
| TATCCTGCATTTCAGGTTGA+TGG | 0.259570 | 4.4:-5255458 | MS.gene89715:intron |
| TCTGGAAAGCTTCTTAAGTA+TGG | 0.270894 | 4.4:-5257842 | MS.gene89715:CDS |
| ATTAGGTTTCCAGATAAAAT+TGG | 0.282978 | 4.4:-5257700 | MS.gene89715:intron |
| CGTAAGAGGCGTAACATCTA+TGG | 0.323566 | 4.4:+5259072 | None:intergenic |
| CTGTTCCGGACAAGCATTCC+TGG | 0.324547 | 4.4:-5255434 | MS.gene89715:CDS |
| CAAACTTTGACAACAAGTTC+TGG | 0.350397 | 4.4:-5257860 | MS.gene89715:CDS |
| GAGTGAACAATCTTTGTAAA+AGG | 0.353339 | 4.4:+5256476 | None:intergenic |
| AAAACCCTTGAGTAGAAGTA+TGG | 0.356865 | 4.4:+5255037 | None:intergenic |
| ATCAATCGGAGGCTGTCTTC+TGG | 0.360441 | 4.4:+5254301 | None:intergenic |
| GGCTGTCTTCTGGCAAGTTC+AGG | 0.361852 | 4.4:+5254311 | None:intergenic |
| CTTTGTAAAAGGTGATCTTC+AGG | 0.364643 | 4.4:+5256487 | None:intergenic |
| TTCAGGTTGATGGTCTGTTC+CGG | 0.376519 | 4.4:-5255448 | MS.gene89715:intron |
| TGTAGCCGCTTTCCCTTTGA+AGG | 0.382255 | 4.4:-5255393 | MS.gene89715:intron |
| GGGTGCCTCCATTAAAAGTT+TGG | 0.382945 | 4.4:-5256055 | MS.gene89715:CDS |
| AAAATTGGCGGAAACCTATC+TGG | 0.393328 | 4.4:-5257685 | MS.gene89715:CDS |
| TATCTGGTGTTCACTATGTT+CGG | 0.396099 | 4.4:-5257669 | MS.gene89715:CDS |
| AGTTTGGAAGCTAGTTCTAA+TGG | 0.403646 | 4.4:-5256039 | MS.gene89715:CDS |
| CGGAGTTTGCCTTTCTCCAC+CGG | 0.409361 | 4.4:+5258541 | None:intergenic |
| GTAGTTGGAGGTGGTTATAT+AGG | 0.417824 | 4.4:-5257237 | MS.gene89715:CDS |
| TTTCAGGTAATTATAGGCAT+TGG | 0.430590 | 4.4:-5255799 | MS.gene89715:intron |
| TAGGGGTTTCATACTTGTGT+TGG | 0.430901 | 4.4:-5258566 | MS.gene89715:CDS |
| GAAGAACTCTACCAAAAGAA+TGG | 0.434145 | 4.4:-5256433 | MS.gene89715:CDS |
| AAGAACTCTACCAAAAGAAT+GGG | 0.434278 | 4.4:-5256432 | MS.gene89715:CDS |
| AGACGTGCCGGCTTCTTATC+CGG | 0.440105 | 4.4:+5258706 | None:intergenic |
| TTGCTGCTGCAGCTGTTGCT+TGG | 0.440762 | 4.4:-5257206 | MS.gene89715:CDS |
| CGGCGGGAACAAGTAAGCTT+TGG | 0.443429 | 4.4:+5258726 | None:intergenic |
| CCTTTGAACAGTTGGAGAAA+CGG | 0.449926 | 4.4:-5254820 | MS.gene89715:intron |
| TCACCAACGGCAAATATTCC+AGG | 0.450460 | 4.4:+5255416 | None:intergenic |
| TTTCATACTTGTGTTGGATC+CGG | 0.452635 | 4.4:-5258560 | MS.gene89715:CDS |
| GTGGGTCCCTTTGAGAGGGT+GGG | 0.453084 | 4.4:-5255763 | MS.gene89715:CDS |
| TGAAGTTTGGCTTTATCAAT+CGG | 0.453211 | 4.4:+5254287 | None:intergenic |
| AAGGAAGCCCTAGAAAAGTA+TGG | 0.455277 | 4.4:-5255006 | MS.gene89715:CDS |
| GTTAAAGCAGGACGCTCATA+AGG | 0.458093 | 4.4:+5258748 | None:intergenic |
| TCTTTGTATTGTTACTAAAG+AGG | 0.470517 | 4.4:-5258879 | MS.gene89715:intron |
| ATATTCCAGGAATGCTTGTC+CGG | 0.470788 | 4.4:+5255429 | None:intergenic |
| TACTGATGTTGGTGGTATAC+AGG | 0.474240 | 4.4:-5255734 | MS.gene89715:intron |
| GTCTTCTGGCAAGTTCAGGC+AGG | 0.474739 | 4.4:+5254315 | None:intergenic |
| GTCGAGCACGGCGTCGCCGA+TGG | 0.476913 | 4.4:-5258905 | MS.gene89715:CDS |
| GGTGTTGCTGCTGTGAAACT+TGG | 0.478567 | 4.4:-5256009 | MS.gene89715:CDS |
| TGCTGTGGGTCCCTTTGAGA+GGG | 0.480462 | 4.4:-5255767 | MS.gene89715:CDS |
| ATCTTCCATACTTCTACTCA+AGG | 0.480887 | 4.4:-5255042 | MS.gene89715:CDS |
| ATCTGGTGTTCACTATGTTC+GGG | 0.484399 | 4.4:-5257668 | MS.gene89715:CDS |
| CCGGAGTGGTATAAAGAGAA+AGG | 0.486714 | 4.4:-5258521 | MS.gene89715:CDS |
| CATGTTCCACTCGAGAAATC+CGG | 0.487129 | 4.4:+5255228 | None:intergenic |
| AAGGGAGTTCTTGTTGAAAG+TGG | 0.487360 | 4.4:-5254567 | MS.gene89715:CDS |
| TGTGGGTCCCTTTGAGAGGG+TGG | 0.493473 | 4.4:-5255764 | MS.gene89715:CDS |
| AGTTAACAGTATACCTTCAA+AGG | 0.502143 | 4.4:+5255380 | None:intergenic |
| TGTAGGTATGTGATCGTTGG+CGG | 0.503279 | 4.4:-5258962 | MS.gene89715:intron |
| CTTAAACACACACTTTCTAT+CGG | 0.503444 | 4.4:-5259167 | MS.gene89715:CDS |
| CTGCTGTGGGTCCCTTTGAG+AGG | 0.505488 | 4.4:-5255768 | MS.gene89715:CDS |
| GTGGGTTTGAATACTGATGT+TGG | 0.506009 | 4.4:-5255745 | MS.gene89715:CDS |
| ATTTGTAGGTATGTGATCGT+TGG | 0.508034 | 4.4:-5258965 | MS.gene89715:intron |
| AAGATTCCCGAGCAATGTCT+AGG | 0.510266 | 4.4:+5254240 | None:intergenic |
| CATTGGAGCGAAGCCTGCTG+TGG | 0.512600 | 4.4:-5255782 | MS.gene89715:CDS |
| AAATTGGACAGATCTACAAC+CGG | 0.512737 | 4.4:-5255247 | MS.gene89715:intron |
| AGGAGGCCCTAGACATTGCT+CGG | 0.512883 | 4.4:-5254247 | MS.gene89715:CDS |
| AACAATACAAAGACGGCCAT+CGG | 0.513414 | 4.4:+5258889 | None:intergenic |
| AAGTAAGCTTTGGTTAAAGC+AGG | 0.518285 | 4.4:+5258736 | None:intergenic |
| TGGAGGTGGTTATATAGGAA+TGG | 0.519829 | 4.4:-5257232 | MS.gene89715:CDS |
| CTCTCAAAGGGACCCACAGC+AGG | 0.521993 | 4.4:+5255769 | None:intergenic |
| GAATGGGGTCAAAATATTGA+AGG | 0.522616 | 4.4:-5256416 | MS.gene89715:intron |
| GTGTTGGATCCGGTGGAGAA+AGG | 0.523177 | 4.4:-5258550 | MS.gene89715:CDS |
| AAATGCAACCTCAGTGGAGG+AGG | 0.524675 | 4.4:-5254264 | MS.gene89715:CDS |
| ATCTATTGTTGAAGCCGATA+CGG | 0.524804 | 4.4:-5255980 | MS.gene89715:intron |
| GTATAAAGAGAAAGGGATTG+AGG | 0.525751 | 4.4:-5258513 | MS.gene89715:intron |
| TTCAAACCCACCCTCTCAAA+GGG | 0.525859 | 4.4:+5255757 | None:intergenic |
| GAACATAGTGAACACCAGAT+AGG | 0.525885 | 4.4:+5257671 | None:intergenic |
| TCATATCTCCGTGCAAGAGA+AGG | 0.531450 | 4.4:+5256454 | None:intergenic |
| GTTAACAGTATACCTTCAAA+GGG | 0.531790 | 4.4:+5255381 | None:intergenic |
| AGGTTTCCAGATAAAATTGG+CGG | 0.534285 | 4.4:-5257697 | MS.gene89715:CDS |
| CGGAGTGGTATAAAGAGAAA+GGG | 0.546012 | 4.4:-5258520 | MS.gene89715:CDS |
| TGTTGCAGATGCTGATGCGC+TGG | 0.548090 | 4.4:-5257644 | MS.gene89715:CDS |
| TGTTCACTCCTTCTCTTGCA+CGG | 0.552103 | 4.4:-5256462 | MS.gene89715:CDS |
| ATTCCTGGAATATTTGCCGT+TGG | 0.553532 | 4.4:-5255419 | MS.gene89715:CDS |
| TGATGCGCTGGTTTCATCGT+TGG | 0.555619 | 4.4:-5257632 | MS.gene89715:intron |
| CCTTTCTCTTTATACCACTC+CGG | 0.556098 | 4.4:+5258521 | None:intergenic |
| GGATCGCTTATTATCGCTAC+GGG | 0.559989 | 4.4:-5257821 | MS.gene89715:CDS |
| GAAGCTAGTTCTAATGGTAA+CGG | 0.561867 | 4.4:-5256033 | MS.gene89715:CDS |
| GTTGGCGGAGGAAACGCGGC+GGG | 0.566996 | 4.4:-5258947 | MS.gene89715:CDS |
| AAGGTTGTAGTAGTTGGAGG+TGG | 0.567180 | 4.4:-5257246 | MS.gene89715:CDS |
| ATTCAAACCCACCCTCTCAA+AGG | 0.569035 | 4.4:+5255756 | None:intergenic |
| GCTGCTGTGAAACTTGGAGA+TGG | 0.572397 | 4.4:-5256003 | MS.gene89715:CDS |
| AGGGAGTTCTTGTTGAAAGT+GGG | 0.573102 | 4.4:-5254566 | MS.gene89715:CDS |
| CATACTTGTGTTGGATCCGG+TGG | 0.574095 | 4.4:-5258557 | MS.gene89715:CDS |
| GGAGGCCCTAGACATTGCTC+GGG | 0.578113 | 4.4:-5254246 | MS.gene89715:CDS |
| ATTGGAGCGAAGCCTGCTGT+GGG | 0.582408 | 4.4:-5255781 | MS.gene89715:CDS |
| GCTCGCACTTTCGTCGAGCA+CGG | 0.582836 | 4.4:-5258917 | MS.gene89715:CDS |
| TCTTCCATACTTCTACTCAA+GGG | 0.588304 | 4.4:-5255041 | MS.gene89715:CDS |
| GTGCCGGCTTCTTATCCGGC+GGG | 0.590871 | 4.4:+5258710 | None:intergenic |
| ATTCTTACAGGAAGACGTGC+CGG | 0.591575 | 4.4:+5258694 | None:intergenic |
| GGTTTGAATACTGATGTTGG+TGG | 0.591995 | 4.4:-5255742 | MS.gene89715:CDS |
| TGTAGATCATGCTCGCAGAT+CGG | 0.594852 | 4.4:-5255207 | MS.gene89715:CDS |
| AGGTATGTGATCGTTGGCGG+AGG | 0.595324 | 4.4:-5258959 | MS.gene89715:CDS |
| AGATTCCCGAGCAATGTCTA+GGG | 0.597044 | 4.4:+5254241 | None:intergenic |
| CGGTGGAGAAAGGCAAACTC+CGG | 0.606827 | 4.4:-5258540 | MS.gene89715:CDS |
| CTACAACCGGATTTCTCGAG+TGG | 0.609013 | 4.4:-5255234 | MS.gene89715:CDS |
| CTACGGGATGTACAGCCTCA+AGG | 0.614506 | 4.4:-5257805 | MS.gene89715:intron |
| TGGATCGCTTATTATCGCTA+CGG | 0.615296 | 4.4:-5257822 | MS.gene89715:CDS |
| GTTCCCGCCGGATAAGAAGC+CGG | 0.621746 | 4.4:-5258713 | MS.gene89715:CDS |
| CAAAGCTTACTTGTTCCCGC+CGG | 0.625888 | 4.4:-5258725 | MS.gene89715:CDS |
| ATACTGCACAGGTAAGCTGA+AGG | 0.625932 | 4.4:-5254586 | MS.gene89715:intron |
| AATGAGAGTGAAGTTGATGA+AGG | 0.626813 | 4.4:+5259104 | None:intergenic |
| GATCGTTGGCGGAGGAAACG+CGG | 0.630231 | 4.4:-5258951 | MS.gene89715:CDS |
| TACTGCACAGGTAAGCTGAA+GGG | 0.630603 | 4.4:-5254585 | MS.gene89715:intron |
| TCAAAATGCAACCTCAGTGG+AGG | 0.632916 | 4.4:-5254267 | MS.gene89715:CDS |
| GTATACCTTCAAAGGGAAAG+CGG | 0.644512 | 4.4:+5255388 | None:intergenic |
| AGTTTGGCTTTATCAATCGG+AGG | 0.650779 | 4.4:+5254290 | None:intergenic |
| CTTTAGTAACAATACAAAGA+CGG | 0.652221 | 4.4:+5258882 | None:intergenic |
| ACTTCAAAATGCAACCTCAG+TGG | 0.656573 | 4.4:-5254270 | MS.gene89715:CDS |
| CGTGCCGGCTTCTTATCCGG+CGG | 0.659726 | 4.4:+5258709 | None:intergenic |
| AGAGGCGTAACATCTATGGA+AGG | 0.665407 | 4.4:+5259076 | None:intergenic |
| GTCTAGGGCCTCCTCCACTG+AGG | 0.670188 | 4.4:+5254256 | None:intergenic |
| CTGAAATCTGTTCTAAACAG+CGG | 0.672278 | 4.4:+5254211 | None:intergenic |
| GCTAGTTCTAATGGTAACGG+AGG | 0.676312 | 4.4:-5256030 | MS.gene89715:CDS |
| GAAAGCGGCTACATCACCAA+CGG | 0.696123 | 4.4:+5255403 | None:intergenic |
| TGTTGAAAGTGGGAGCCCTG+AGG | 0.697472 | 4.4:-5254556 | MS.gene89715:intron |
| AGAACTCTACCAAAAGAATG+GGG | 0.712465 | 4.4:-5256431 | MS.gene89715:CDS |
| GAGAAAGGCAAACTCCGGAG+TGG | 0.714360 | 4.4:-5258535 | MS.gene89715:CDS |
| GAAGCCCTAGAAAAGTATGG+TGG | 0.729332 | 4.4:-5255003 | MS.gene89715:CDS |
| CGTTGGCGGAGGAAACGCGG+CGG | 0.738727 | 4.4:-5258948 | MS.gene89715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAGAAATGAA+AGG | + | chr4.4:5258526-5258545 | None:intergenic | 10.0% |
| !! | GTTTATTTATCATTTATTAT+AGG | - | chr4.4:5255122-5255141 | MS.gene89715:intron | 10.0% |
| !! | AAAAAAAAACAACTAATTTC+AGG | + | chr4.4:5258304-5258323 | None:intergenic | 15.0% |
| !! | AGAAAAAAATAAAGTTGTAT+TGG | + | chr4.4:5257162-5257181 | None:intergenic | 15.0% |
| !! | GTAAATATCAATAAAATCAT+TGG | + | chr4.4:5255846-5255865 | None:intergenic | 15.0% |
| !! | TAAAATGTGATTTATTTATC+AGG | - | chr4.4:5256359-5256378 | MS.gene89715:intron | 15.0% |
| !! | TGTTAATGTTATTAATAACT+TGG | - | chr4.4:5258948-5258967 | MS.gene89715:CDS | 15.0% |
| !!! | AAATAAATCACATTTTAAAG+AGG | + | chr4.4:5256356-5256375 | None:intergenic | 15.0% |
| !!! | AAATATGATCTATTTTTTAC+AGG | + | chr4.4:5256910-5256929 | None:intergenic | 15.0% |
| !!! | AACAATCAATTTTAATGTAT+AGG | + | chr4.4:5256847-5256866 | None:intergenic | 15.0% |
| !!! | AATAAATCACATTTTAAAGA+GGG | + | chr4.4:5256355-5256374 | None:intergenic | 15.0% |
| !!! | ACAAATTGAAAAACTTTTTT+AGG | + | chr4.4:5256519-5256538 | None:intergenic | 15.0% |
| !!! | TATGTAATGCTTTTTATTTA+GGG | - | chr4.4:5254833-5254852 | MS.gene89715:intron | 15.0% |
| !!! | TTATGTAATGCTTTTTATTT+AGG | - | chr4.4:5254832-5254851 | MS.gene89715:intron | 15.0% |
| !!! | TTTTATAATGCTCAAATTAT+TGG | - | chr4.4:5257520-5257539 | MS.gene89715:intron | 15.0% |
| !! | AAAATTTCAACTCTTTATTG+AGG | + | chr4.4:5255243-5255262 | None:intergenic | 20.0% |
| !! | AAATTAACACAGAACTAATT+CGG | + | chr4.4:5259034-5259053 | None:intergenic | 20.0% |
| !! | ATAATGCTCAAATTAAATAG+AGG | + | chr4.4:5257334-5257353 | None:intergenic | 20.0% |
| !! | ATTGATATTTACGTTTATGA+TGG | - | chr4.4:5255854-5255873 | MS.gene89715:intron | 20.0% |
| !! | CTTTACAATCATTTGATATA+TGG | - | chr4.4:5255892-5255911 | MS.gene89715:intron | 20.0% |
| !! | TAGCAAAGATAATATTTGAA+TGG | + | chr4.4:5255918-5255937 | None:intergenic | 20.0% |
| !! | TATCTGTGTTTCTTAAAAAT+TGG | - | chr4.4:5258154-5258173 | MS.gene89715:intron | 20.0% |
| !! | TTGATATTTACGTTTATGAT+GGG | - | chr4.4:5255855-5255874 | MS.gene89715:intron | 20.0% |
| !! | TTTATAGCCAAAAATTAAGT+TGG | - | chr4.4:5256082-5256101 | MS.gene89715:intron | 20.0% |
| !!! | AGATGTTGATTATCAATTTT+TGG | - | chr4.4:5257840-5257859 | MS.gene89715:CDS | 20.0% |
| !!! | ATGTAATGCTTTTTATTTAG+GGG | - | chr4.4:5254834-5254853 | MS.gene89715:intron | 20.0% |
| !!! | ATTTTTAAGAAAACAACAGA+AGG | + | chr4.4:5255662-5255681 | None:intergenic | 20.0% |
| !!! | TCTAATTTTCAGGTAATTAT+AGG | - | chr4.4:5257612-5257631 | MS.gene89715:intron | 20.0% |
| !!! | TCTGTTGTTTTCTTAAAAAT+TGG | - | chr4.4:5255662-5255681 | MS.gene89715:intron | 20.0% |
| !!! | TTAGTTCATTTTCTAAAAAG+TGG | + | chr4.4:5256394-5256413 | None:intergenic | 20.0% |
| !!! | TTTATGTCCAACTTAATTTT+TGG | + | chr4.4:5256092-5256111 | None:intergenic | 20.0% |
| !!! | TTTCCATTTTCTTTAATATG+TGG | - | chr4.4:5257470-5257489 | MS.gene89715:intron | 20.0% |
| !!! | TTTCCTACACTATTTTTATT+GGG | - | chr4.4:5256258-5256277 | MS.gene89715:intron | 20.0% |
| !!! | TTTTCCTACACTATTTTTAT+TGG | - | chr4.4:5256257-5256276 | MS.gene89715:intron | 20.0% |
| !!! | TTTTTTAATCGCTTATTTGT+AGG | - | chr4.4:5254438-5254457 | MS.gene89715:intron | 20.0% |
| !!! | TTTTTTTGAAGACATATGAA+AGG | + | chr4.4:5258494-5258513 | None:intergenic | 20.0% |
| ! | AAACATTGTTAAGTAAGTGT+CGG | - | chr4.4:5256753-5256772 | MS.gene89715:intron | 25.0% |
| ! | AAAGGAAAATTAATAGTGTG+AGG | + | chr4.4:5258582-5258601 | None:intergenic | 25.0% |
| ! | AAATTAAATAGAGGAAAGGA+AGG | + | chr4.4:5257325-5257344 | None:intergenic | 25.0% |
| ! | ACAACATATGTATGAGATTA+TGG | + | chr4.4:5256811-5256830 | None:intergenic | 25.0% |
| ! | AGTACTTACTAGTTACAATA+TGG | + | chr4.4:5257062-5257081 | None:intergenic | 25.0% |
| ! | ATGCTGAATTGATGAAAATA+GGG | - | chr4.4:5254639-5254658 | MS.gene89715:intron | 25.0% |
| ! | ATGTTTGCAGATAAAATTAG+AGG | - | chr4.4:5257892-5257911 | MS.gene89715:CDS | 25.0% |
| ! | ATTAGGTTTCCAGATAAAAT+TGG | - | chr4.4:5255717-5255736 | MS.gene89715:intron | 25.0% |
| ! | ATTGAGGAAATATGTAACTA+AGG | + | chr4.4:5255227-5255246 | None:intergenic | 25.0% |
| ! | ATTTGAGCATTATATTCATC+AGG | - | chr4.4:5257341-5257360 | MS.gene89715:intron | 25.0% |
| ! | CATAAATTAGAGGAAAAATG+AGG | + | chr4.4:5256728-5256747 | None:intergenic | 25.0% |
| ! | CTCAAATAAGTCAATTCTAA+CGG | + | chr4.4:5254944-5254963 | None:intergenic | 25.0% |
| ! | CTTTAGTAACAATACAAAGA+CGG | + | chr4.4:5254538-5254557 | None:intergenic | 25.0% |
| ! | GAAAAAGAAATATACCGTAT+CGG | + | chr4.4:5257454-5257473 | None:intergenic | 25.0% |
| ! | GGTGAAATAGAAAAATAGAA+AGG | + | chr4.4:5258552-5258571 | None:intergenic | 25.0% |
| ! | TAACAAGATAGAAGATGAAT+TGG | + | chr4.4:5255698-5255717 | None:intergenic | 25.0% |
| ! | TAGGACATTAACAAGAAAAA+TGG | + | chr4.4:5256494-5256513 | None:intergenic | 25.0% |
| ! | TAGTATATTGTAACTGAGTA+AGG | - | chr4.4:5255408-5255427 | MS.gene89715:CDS | 25.0% |
| ! | TATGCTGAATTGATGAAAAT+AGG | - | chr4.4:5254638-5254657 | MS.gene89715:intron | 25.0% |
| ! | TCAATATTGCTGAATTTCAT+TGG | - | chr4.4:5258334-5258353 | MS.gene89715:intron | 25.0% |
| ! | TCATATTCTCTGATATTTAC+TGG | - | chr4.4:5254807-5254826 | MS.gene89715:CDS | 25.0% |
| ! | TCTTTGTATTGTTACTAAAG+AGG | - | chr4.4:5254538-5254557 | MS.gene89715:intron | 25.0% |
| ! | TGCTCAAAATACAAATTTCT+TGG | - | chr4.4:5256460-5256479 | MS.gene89715:CDS | 25.0% |
| ! | TGTTTGCAGATAAAATTAGA+GGG | - | chr4.4:5257893-5257912 | MS.gene89715:CDS | 25.0% |
| ! | TTAAGATGTTTATCTAAGCA+AGG | - | chr4.4:5255201-5255220 | MS.gene89715:CDS | 25.0% |
| ! | TTTGAGCATTATATTCATCA+GGG | - | chr4.4:5257342-5257361 | MS.gene89715:intron | 25.0% |
| ! | TTTGCATAATGTTCAAGATT+AGG | - | chr4.4:5257730-5257749 | MS.gene89715:intron | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | chr4.4:5257196-5257215 | None:intergenic | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | chr4.4:5257195-5257214 | None:intergenic | 25.0% |
| !! | AAGTTTGTCTTTTTGTGAAA+CGG | - | chr4.4:5257241-5257260 | MS.gene89715:CDS | 25.0% |
| !! | ACTTTCTCTTTCTAATTTTC+AGG | - | chr4.4:5257602-5257621 | MS.gene89715:intron | 25.0% |
| !! | CTAATTTTATCTGCAAACAT+GGG | + | chr4.4:5257892-5257911 | None:intergenic | 25.0% |
| !! | CTTTTCAATGCTTTTCATAT+GGG | - | chr4.4:5255947-5255966 | MS.gene89715:intron | 25.0% |
| !! | TAATTTTATCTGCAAACATG+GGG | + | chr4.4:5257891-5257910 | None:intergenic | 25.0% |
| !! | TCTAATTTTATCTGCAAACA+TGG | + | chr4.4:5257893-5257912 | None:intergenic | 25.0% |
| !! | TCTTTTCAATGCTTTTCATA+TGG | - | chr4.4:5255946-5255965 | MS.gene89715:intron | 25.0% |
| !! | TGTTTGAAACCATAAATTAG+AGG | + | chr4.4:5256738-5256757 | None:intergenic | 25.0% |
| !! | TTAATTTTCCTTTGAACAGT+TGG | - | chr4.4:5258589-5258608 | MS.gene89715:intron | 25.0% |
| !!! | AATTGATTGTTGTTTTCTGA+AGG | - | chr4.4:5256856-5256875 | MS.gene89715:intron | 25.0% |
| !!! | ATCCAAAAAGTAGCTATTTT+AGG | + | chr4.4:5258643-5258662 | None:intergenic | 25.0% |
| !!! | ATCCTAAAATAGCTACTTTT+TGG | - | chr4.4:5258638-5258657 | MS.gene89715:intron | 25.0% |
| !!! | CTCATTTTTCCTCTAATTTA+TGG | - | chr4.4:5256726-5256745 | MS.gene89715:intron | 25.0% |
| !!! | CTGTTTGTTTTTTTATTTCC+AGG | - | chr4.4:5256137-5256156 | MS.gene89715:intron | 25.0% |
| !!! | TCATCTTCTATCTTGTTATT+AGG | - | chr4.4:5255700-5255719 | MS.gene89715:intron | 25.0% |
| !!! | TGAAAAACTTTTTTAGGCAT+AGG | + | chr4.4:5256513-5256532 | None:intergenic | 25.0% |
| !!! | TTCCTACACTATTTTTATTG+GGG | - | chr4.4:5256259-5256278 | MS.gene89715:intron | 25.0% |
| AAAAGAAACAATGTGGTTCT+TGG | + | chr4.4:5256065-5256084 | None:intergenic | 30.0% | |
| AAAAGAAAGATTGAAGAACG+GGG | + | chr4.4:5257039-5257058 | None:intergenic | 30.0% | |
| AACAATAAGTCATGTTAGAG+AGG | + | chr4.4:5255823-5255842 | None:intergenic | 30.0% | |
| AACATTGTTAAGTAAGTGTC+GGG | - | chr4.4:5256754-5256773 | MS.gene89715:intron | 30.0% | |
| AAGAACTCTACCAAAAGAAT+GGG | - | chr4.4:5256985-5257004 | MS.gene89715:intron | 30.0% | |
| AATATACTAAGACTCTCCTA+CGG | + | chr4.4:5255397-5255416 | None:intergenic | 30.0% | |
| AATTAATAGTGTGAGGAACA+AGG | + | chr4.4:5258575-5258594 | None:intergenic | 30.0% | |
| AGTTAACAGTATACCTTCAA+AGG | + | chr4.4:5258040-5258059 | None:intergenic | 30.0% | |
| ATATTGTAACTGAGTAAGGA+AGG | - | chr4.4:5255412-5255431 | MS.gene89715:CDS | 30.0% | |
| ATTAATAGTGTGAGGAACAA+GGG | + | chr4.4:5258574-5258593 | None:intergenic | 30.0% | |
| ATTCACCATAACATTCTTAC+AGG | + | chr4.4:5254738-5254757 | None:intergenic | 30.0% | |
| CAAAATATTTGCTTATCCAC+TGG | + | chr4.4:5257714-5257733 | None:intergenic | 30.0% | |
| CAGCATTACAATAACTTCAA+TGG | + | chr4.4:5255467-5255486 | None:intergenic | 30.0% | |
| CAGCCACATATTAAAGAAAA+TGG | + | chr4.4:5257476-5257495 | None:intergenic | 30.0% | |
| CATTCTTAGCTATTACGAAA+CGG | - | chr4.4:5255361-5255380 | MS.gene89715:intron | 30.0% | |
| CTTAAACACACACTTTCTAT+CGG | - | chr4.4:5254250-5254269 | MS.gene89715:CDS | 30.0% | |
| CTTATTTCCATAAGTTCTCT+AGG | - | chr4.4:5255055-5255074 | MS.gene89715:intron | 30.0% | |
| GAAAAGAAAGATTGAAGAAC+GGG | + | chr4.4:5257040-5257059 | None:intergenic | 30.0% | |
| GAAAATTGTGAGAGAAAAGT+TGG | + | chr4.4:5257210-5257229 | None:intergenic | 30.0% | |
| GAAATTCAGCAATATTGACA+GGG | + | chr4.4:5258332-5258351 | None:intergenic | 30.0% | |
| GACATTAACAAGAAAAATGG+AGG | + | chr4.4:5256491-5256510 | None:intergenic | 30.0% | |
| GAGAATATGAACATAACTAC+TGG | + | chr4.4:5254797-5254816 | None:intergenic | 30.0% | |
| GAGTGAACAATCTTTGTAAA+AGG | + | chr4.4:5256944-5256963 | None:intergenic | 30.0% | |
| GCACACTATTAGTAATAATC+AGG | + | chr4.4:5258809-5258828 | None:intergenic | 30.0% | |
| GCTCAAATTAAATAGAGGAA+AGG | + | chr4.4:5257329-5257348 | None:intergenic | 30.0% | |
| GGAAAAGAAAGATTGAAGAA+CGG | + | chr4.4:5257041-5257060 | None:intergenic | 30.0% | |
| GTAAATAGACAAATACCTTG+AGG | + | chr4.4:5255630-5255649 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | chr4.4:5257186-5257205 | None:intergenic | 30.0% | |
| GTTAACAGTATACCTTCAAA+GGG | + | chr4.4:5258039-5258058 | None:intergenic | 30.0% | |
| GTTTATGACATAAGTTCTCT+AGG | - | chr4.4:5255017-5255036 | MS.gene89715:CDS | 30.0% | |
| TACTTCACTATTCAGCATTT+AGG | + | chr4.4:5256584-5256603 | None:intergenic | 30.0% | |
| TGAAATTCAGCAATATTGAC+AGG | + | chr4.4:5258333-5258352 | None:intergenic | 30.0% | |
| TGCTGAATTGATGAAAATAG+GGG | - | chr4.4:5254640-5254659 | MS.gene89715:intron | 30.0% | |
| TGGCTATAAAAGAAACAATG+TGG | + | chr4.4:5256072-5256091 | None:intergenic | 30.0% | |
| TTATATGTGACATTTCTGCT+CGG | - | chr4.4:5255977-5255996 | MS.gene89715:intron | 30.0% | |
| TTCCCCAATAAAAATAGTGT+AGG | + | chr4.4:5256264-5256283 | None:intergenic | 30.0% | |
| TTTATCTGCAGCAATTTAGA+GGG | - | chr4.4:5257768-5257787 | MS.gene89715:intron | 30.0% | |
| ! | AATTTTATCTGCAAACATGG+GGG | + | chr4.4:5257890-5257909 | None:intergenic | 30.0% |
| ! | CAAAAGCATGATAATAGTCA+GGG | + | chr4.4:5256697-5256716 | None:intergenic | 30.0% |
| ! | CAATTTGTTTCACTGCATAA+AGG | - | chr4.4:5256531-5256550 | MS.gene89715:intron | 30.0% |
| ! | CATTTTCTTTAATATGTGGC+TGG | - | chr4.4:5257474-5257493 | MS.gene89715:intron | 30.0% |
| ! | TCAGTATCAATGTTTTCTAC+TGG | + | chr4.4:5255533-5255552 | None:intergenic | 30.0% |
| ! | TTTCAGGTAATTATAGGCAT+TGG | - | chr4.4:5257618-5257637 | MS.gene89715:intron | 30.0% |
| !! | ACTAGCTTCCAAACTTTTAA+TGG | + | chr4.4:5257373-5257392 | None:intergenic | 30.0% |
| !! | CGAGTAAGAATTTTTGTTTG+AGG | + | chr4.4:5254280-5254299 | None:intergenic | 30.0% |
| !! | GAATTTCATTGGTGATTTTC+AGG | - | chr4.4:5258345-5258364 | MS.gene89715:intron | 30.0% |
| !! | TGAAGTTTGGCTTTATCAAT+CGG | + | chr4.4:5259133-5259152 | None:intergenic | 30.0% |
| !!! | ATATTTTGACCCCATTCTTT+TGG | + | chr4.4:5256998-5257017 | None:intergenic | 30.0% |
| !!! | CTGTTTTTTGAATGTGTATC+AGG | - | chr4.4:5259069-5259088 | MS.gene89715:CDS | 30.0% |
| AAAAAGGTTGTAGTAGTTGG+AGG | - | chr4.4:5256168-5256187 | MS.gene89715:intron | 35.0% | |
| AAAACAACAGAAGGTGAACT+GGG | + | chr4.4:5255653-5255672 | None:intergenic | 35.0% | |
| AAAACCCTTGAGTAGAAGTA+TGG | + | chr4.4:5258383-5258402 | None:intergenic | 35.0% | |
| AAATTGGACAGATCTACAAC+CGG | - | chr4.4:5258170-5258189 | MS.gene89715:intron | 35.0% | |
| AAGACGAAAACAATCCTTAC+CGG | + | chr4.4:5258671-5258690 | None:intergenic | 35.0% | |
| AAGCTATCCTAGAGAACTTA+TGG | + | chr4.4:5255065-5255084 | None:intergenic | 35.0% | |
| AAGTGACACTCATTGTGAAA+CGG | + | chr4.4:5257092-5257111 | None:intergenic | 35.0% | |
| AATCCACGCATCAATACTAA+AGG | + | chr4.4:5258695-5258714 | None:intergenic | 35.0% | |
| ACATTCAAAAAACAGCTCTC+AGG | + | chr4.4:5259064-5259083 | None:intergenic | 35.0% | |
| ACTACACTAGAAATTACCTC+AGG | + | chr4.4:5258880-5258899 | None:intergenic | 35.0% | |
| AGAACTCTACCAAAAGAATG+GGG | - | chr4.4:5256986-5257005 | MS.gene89715:intron | 35.0% | |
| AGAGGAAAAATGAGGCTAAA+AGG | + | chr4.4:5256720-5256739 | None:intergenic | 35.0% | |
| AGGTTTCCAGATAAAATTGG+CGG | - | chr4.4:5255720-5255739 | MS.gene89715:intron | 35.0% | |
| ATCTATTGTTGAAGCCGATA+CGG | - | chr4.4:5257437-5257456 | MS.gene89715:intron | 35.0% | |
| ATCTTCCATACTTCTACTCA+AGG | - | chr4.4:5258375-5258394 | MS.gene89715:intron | 35.0% | |
| ATTAGAGAAGAAGAGGTCAA+TGG | - | chr4.4:5257569-5257588 | MS.gene89715:intron | 35.0% | |
| ATTGATCATGTTCTTGCTGA+AGG | + | chr4.4:5254581-5254600 | None:intergenic | 35.0% | |
| ATTTGTAGGTATGTGATCGT+TGG | - | chr4.4:5254452-5254471 | MS.gene89715:intron | 35.0% | |
| CAAACTTTGACAACAAGTTC+TGG | - | chr4.4:5255557-5255576 | MS.gene89715:intron | 35.0% | |
| CCATTCCATTTCAAACAATC+TGG | + | chr4.4:5255325-5255344 | None:intergenic | 35.0% | |
| CTACACTAGAAATTACCTCA+GGG | + | chr4.4:5258879-5258898 | None:intergenic | 35.0% | |
| CTTTATCTGCAGCAATTTAG+AGG | - | chr4.4:5257767-5257786 | MS.gene89715:intron | 35.0% | |
| CTTTGTAAAAGGTGATCTTC+AGG | + | chr4.4:5256933-5256952 | None:intergenic | 35.0% | |
| GAAGAACTCTACCAAAAGAA+TGG | - | chr4.4:5256984-5257003 | MS.gene89715:intron | 35.0% | |
| GAAGGACTAAGAGAATAGAA+TGG | + | chr4.4:5257307-5257326 | None:intergenic | 35.0% | |
| GAATGGGGTCAAAATATTGA+AGG | - | chr4.4:5257001-5257020 | MS.gene89715:intron | 35.0% | |
| GCTGAATTGATGAAAATAGG+GGG | - | chr4.4:5254641-5254660 | MS.gene89715:intron | 35.0% | |
| GTATAAAGAGAAAGGGATTG+AGG | - | chr4.4:5254904-5254923 | MS.gene89715:intron | 35.0% | |
| GTATTCTTATCCTGCATTTC+AGG | - | chr4.4:5257952-5257971 | MS.gene89715:intron | 35.0% | |
| GTCTTCCTGTAAGAATGTTA+TGG | - | chr4.4:5254730-5254749 | MS.gene89715:intron | 35.0% | |
| TATCTGGTGTTCACTATGTT+CGG | - | chr4.4:5255748-5255767 | MS.gene89715:CDS | 35.0% | |
| TCAATGTGACTGTGATACAA+TGG | - | chr4.4:5255296-5255315 | MS.gene89715:intron | 35.0% | |
| TCTGGAAAGCTTCTTAAGTA+TGG | - | chr4.4:5255575-5255594 | MS.gene89715:intron | 35.0% | |
| TCTTCCATACTTCTACTCAA+GGG | - | chr4.4:5258376-5258395 | MS.gene89715:intron | 35.0% | |
| TTAATAGTGTGAGGAACAAG+GGG | + | chr4.4:5258573-5258592 | None:intergenic | 35.0% | |
| TTTCATACTTGTGTTGGATC+CGG | - | chr4.4:5254857-5254876 | MS.gene89715:intron | 35.0% | |
| TTTCCAGGAAAAAGCGAAAA+AGG | - | chr4.4:5256152-5256171 | MS.gene89715:intron | 35.0% | |
| ! | AAGTAAGCTTTGGTTAAAGC+AGG | + | chr4.4:5254684-5254703 | None:intergenic | 35.0% |
| ! | AGCTTCCAAACTTTTAATGG+AGG | + | chr4.4:5257370-5257389 | None:intergenic | 35.0% |
| ! | ATTGTCAAAGTATCCATGCA+TGG | + | chr4.4:5256788-5256807 | None:intergenic | 35.0% |
| ! | ATTTTATCTGCAAACATGGG+GGG | + | chr4.4:5257889-5257908 | None:intergenic | 35.0% |
| ! | CCAGATTGTTTGAAATGGAA+TGG | - | chr4.4:5255322-5255341 | MS.gene89715:intron | 35.0% |
| ! | GCAAAAGCATGATAATAGTC+AGG | + | chr4.4:5256698-5256717 | None:intergenic | 35.0% |
| ! | TCAAGGGTTTTTGAATACGA+AGG | - | chr4.4:5258392-5258411 | MS.gene89715:intron | 35.0% |
| ! | TTGTCAAAGTATCCATGCAT+GGG | + | chr4.4:5256787-5256806 | None:intergenic | 35.0% |
| ! | TTGTCTTTTTGTGAAACGGA+GGG | - | chr4.4:5257245-5257264 | MS.gene89715:CDS | 35.0% |
| ! | TTTGTCTTTTTGTGAAACGG+AGG | - | chr4.4:5257244-5257263 | MS.gene89715:CDS | 35.0% |
| ! | TTTTTGGATTGAATCCGGTA+AGG | - | chr4.4:5258654-5258673 | MS.gene89715:intron | 35.0% |
| !! | AACAACTAATTTCAGGTTGC+AGG | + | chr4.4:5258297-5258316 | None:intergenic | 35.0% |
| !! | AATGAGAGTGAAGTTGATGA+AGG | + | chr4.4:5254316-5254335 | None:intergenic | 35.0% |
| !! | AGGGTTTGCTTTTGAAAGAA+TGG | + | chr4.4:5256336-5256355 | None:intergenic | 35.0% |
| !! | AGTTTGGAAGCTAGTTCTAA+TGG | - | chr4.4:5257378-5257397 | MS.gene89715:intron | 35.0% |
| !! | ATTCCTGTTTCTGGAAAACT+AGG | - | chr4.4:5258098-5258117 | MS.gene89715:intron | 35.0% |
| !! | GAAGCTAGTTCTAATGGTAA+CGG | - | chr4.4:5257384-5257403 | MS.gene89715:intron | 35.0% |
| !! | TTTCCTTTAGTATTGATGCG+TGG | - | chr4.4:5258689-5258708 | MS.gene89715:intron | 35.0% |
| !!! | AAAGTATGGTGGCAGTTTTT+TGG | - | chr4.4:5258425-5258444 | MS.gene89715:intron | 35.0% |
| !!! | GCTACTTTTTGGATTGAATC+CGG | - | chr4.4:5258649-5258668 | MS.gene89715:intron | 35.0% |
| !!! | TGAGGTTGCATTTTGAAGTT+TGG | + | chr4.4:5259146-5259165 | None:intergenic | 35.0% |
| AAAATTGGCGGAAACCTATC+TGG | - | chr4.4:5255732-5255751 | MS.gene89715:intron | 40.0% | |
| AAACAACAGAAGGTGAACTG+GGG | + | chr4.4:5255652-5255671 | None:intergenic | 40.0% | |
| AACAATACAAAGACGGCCAT+CGG | + | chr4.4:5254531-5254550 | None:intergenic | 40.0% | |
| AAGGAAGCCCTAGAAAAGTA+TGG | - | chr4.4:5258411-5258430 | MS.gene89715:intron | 40.0% | |
| AAGGGAGTTCTTGTTGAAAG+TGG | - | chr4.4:5258850-5258869 | MS.gene89715:intron | 40.0% | |
| ACTTCAAAATGCAACCTCAG+TGG | - | chr4.4:5259147-5259166 | MS.gene89715:CDS | 40.0% | |
| AGGGAGTTCTTGTTGAAAGT+GGG | - | chr4.4:5258851-5258870 | MS.gene89715:intron | 40.0% | |
| ATAGTGTGCTAATACTGCAC+AGG | - | chr4.4:5258820-5258839 | MS.gene89715:intron | 40.0% | |
| ATATTCCAGGAATGCTTGTC+CGG | + | chr4.4:5257991-5258010 | None:intergenic | 40.0% | |
| ATCTGGTGTTCACTATGTTC+GGG | - | chr4.4:5255749-5255768 | MS.gene89715:CDS | 40.0% | |
| ATGATAATAGTCAGGGTCCT+TGG | + | chr4.4:5256690-5256709 | None:intergenic | 40.0% | |
| ATTAAGACACAGCTCTACCA+AGG | - | chr4.4:5256670-5256689 | MS.gene89715:intron | 40.0% | |
| ATTCCTGGAATATTTGCCGT+TGG | - | chr4.4:5257998-5258017 | MS.gene89715:intron | 40.0% | |
| CCTTTCTCTTTATACCACTC+CGG | + | chr4.4:5254899-5254918 | None:intergenic | 40.0% | |
| CCTTTGAACAGTTGGAGAAA+CGG | - | chr4.4:5258597-5258616 | MS.gene89715:intron | 40.0% | |
| CGGAGTGGTATAAAGAGAAA+GGG | - | chr4.4:5254897-5254916 | MS.gene89715:intron | 40.0% | |
| CGTCTTCATTAGAGAAGAAG+AGG | - | chr4.4:5257562-5257581 | MS.gene89715:intron | 40.0% | |
| GAAAACAACAGAAGGTGAAC+TGG | + | chr4.4:5255654-5255673 | None:intergenic | 40.0% | |
| GAACATAGTGAACACCAGAT+AGG | + | chr4.4:5255749-5255768 | None:intergenic | 40.0% | |
| GCGAAAAAGGTTGTAGTAGT+TGG | - | chr4.4:5256165-5256184 | MS.gene89715:intron | 40.0% | |
| GCGACTAGAAAGACTTAATG+TGG | + | chr4.4:5256624-5256643 | None:intergenic | 40.0% | |
| GGACACCAGATTGTTTGAAA+TGG | - | chr4.4:5255317-5255336 | MS.gene89715:intron | 40.0% | |
| GGTTTGAATACTGATGTTGG+TGG | - | chr4.4:5257675-5257694 | MS.gene89715:CDS | 40.0% | |
| GTAGTTGGAGGTGGTTATAT+AGG | - | chr4.4:5256180-5256199 | MS.gene89715:intron | 40.0% | |
| GTATACCTTCAAAGGGAAAG+CGG | + | chr4.4:5258032-5258051 | None:intergenic | 40.0% | |
| GTGGGTTTGAATACTGATGT+TGG | - | chr4.4:5257672-5257691 | MS.gene89715:CDS | 40.0% | |
| GTTGGAGAAACGGTTGAAAT+TGG | - | chr4.4:5258607-5258626 | MS.gene89715:intron | 40.0% | |
| TAGGGGTTTCATACTTGTGT+TGG | - | chr4.4:5254851-5254870 | MS.gene89715:intron | 40.0% | |
| TGATCAGACATTCCTGTTTC+TGG | - | chr4.4:5258089-5258108 | MS.gene89715:intron | 40.0% | |
| TGGAGGTGGTTATATAGGAA+TGG | - | chr4.4:5256185-5256204 | MS.gene89715:intron | 40.0% | |
| TGGATCGCTTATTATCGCTA+CGG | - | chr4.4:5255595-5255614 | MS.gene89715:intron | 40.0% | |
| TGGATTATCTCTGAGCTTGA+GGG | - | chr4.4:5258709-5258728 | MS.gene89715:CDS | 40.0% | |
| TGTAATCAAAACCAACAGCG+TGG | + | chr4.4:5255494-5255513 | None:intergenic | 40.0% | |
| ! | AAACGGAGACATTTTACCGT+AGG | - | chr4.4:5255378-5255397 | MS.gene89715:intron | 40.0% |
| ! | AACTGCCACCATACTTTTCT+AGG | + | chr4.4:5258422-5258441 | None:intergenic | 40.0% |
| ! | ACTGCCACCATACTTTTCTA+GGG | + | chr4.4:5258421-5258440 | None:intergenic | 40.0% |
| ! | AGGTTTCCGCCAATTTTATC+TGG | + | chr4.4:5255729-5255748 | None:intergenic | 40.0% |
| ! | ATACCTTGAACTCGCTGTTT+TGG | + | chr4.4:5257922-5257941 | None:intergenic | 40.0% |
| ! | GGGTTCTAACAAAGGAAACA+CGG | + | chr4.4:5257869-5257888 | None:intergenic | 40.0% |
| !! | AGTTTGGCTTTATCAATCGG+AGG | + | chr4.4:5259130-5259149 | None:intergenic | 40.0% |
| !! | TACTGATGTTGGTGGTATAC+AGG | - | chr4.4:5257683-5257702 | MS.gene89715:CDS | 40.0% |
| !! | TATCCTGCATTTCAGGTTGA+TGG | - | chr4.4:5257959-5257978 | MS.gene89715:intron | 40.0% |
| !!! | CAACCTTTTTCGCTTTTTCC+TGG | + | chr4.4:5256158-5256177 | None:intergenic | 40.0% |
| !!! | TGGCAGTTTTTTGGAGACAA+TGG | - | chr4.4:5258434-5258453 | MS.gene89715:intron | 40.0% |
| AAGATTCCCGAGCAATGTCT+AGG | + | chr4.4:5259180-5259199 | None:intergenic | 45.0% | |
| AAGGTTGTAGTAGTTGGAGG+TGG | - | chr4.4:5256171-5256190 | MS.gene89715:intron | 45.0% | |
| AATGCTGAATTCCACGCTGT+TGG | - | chr4.4:5255480-5255499 | MS.gene89715:intron | 45.0% | |
| ACGGAGGGAGTAAGTAGTAA+TGG | - | chr4.4:5257260-5257279 | MS.gene89715:CDS | 45.0% | |
| AGACCATCAACCTGAAATGC+AGG | + | chr4.4:5257965-5257984 | None:intergenic | 45.0% | |
| AGATTCCCGAGCAATGTCTA+GGG | + | chr4.4:5259179-5259198 | None:intergenic | 45.0% | |
| ATACTGCACAGGTAAGCTGA+AGG | - | chr4.4:5258831-5258850 | MS.gene89715:intron | 45.0% | |
| ATTCAAACCCACCCTCTCAA+AGG | + | chr4.4:5257664-5257683 | None:intergenic | 45.0% | |
| ATTCTTACAGGAAGACGTGC+CGG | + | chr4.4:5254726-5254745 | None:intergenic | 45.0% | |
| CATGTTCCACTCGAGAAATC+CGG | + | chr4.4:5258192-5258211 | None:intergenic | 45.0% | |
| CCGGAGTGGTATAAAGAGAA+AGG | - | chr4.4:5254896-5254915 | MS.gene89715:intron | 45.0% | |
| CCGTTTCTCCAACTGTTCAA+AGG | + | chr4.4:5258600-5258619 | None:intergenic | 45.0% | |
| CGGAGGGAGTAAGTAGTAAT+GGG | - | chr4.4:5257261-5257280 | MS.gene89715:CDS | 45.0% | |
| GAAAGATTGAAGAACGGGGA+TGG | + | chr4.4:5257035-5257054 | None:intergenic | 45.0% | |
| GACACTCATTGTGAAACGGA+GGG | + | chr4.4:5257088-5257107 | None:intergenic | 45.0% | |
| GAGAAGAAGAGGTCAATGGA+TGG | - | chr4.4:5257573-5257592 | MS.gene89715:intron | 45.0% | |
| GGATCGCTTATTATCGCTAC+GGG | - | chr4.4:5255596-5255615 | MS.gene89715:intron | 45.0% | |
| GGATTATCTCTGAGCTTGAG+GGG | - | chr4.4:5258710-5258729 | MS.gene89715:CDS | 45.0% | |
| GGGTGCCTCCATTAAAAGTT+TGG | - | chr4.4:5257362-5257381 | MS.gene89715:intron | 45.0% | |
| GTTAAAGCAGGACGCTCATA+AGG | + | chr4.4:5254672-5254691 | None:intergenic | 45.0% | |
| TACTGCACAGGTAAGCTGAA+GGG | - | chr4.4:5258832-5258851 | MS.gene89715:intron | 45.0% | |
| TAGCCAAAACAGCGAGTTCA+AGG | - | chr4.4:5257916-5257935 | MS.gene89715:intron | 45.0% | |
| TCAAAATGCAACCTCAGTGG+AGG | - | chr4.4:5259150-5259169 | MS.gene89715:CDS | 45.0% | |
| TCACCAACGGCAAATATTCC+AGG | + | chr4.4:5258004-5258023 | None:intergenic | 45.0% | |
| TCATATCTCCGTGCAAGAGA+AGG | + | chr4.4:5256966-5256985 | None:intergenic | 45.0% | |
| TGACACTCATTGTGAAACGG+AGG | + | chr4.4:5257089-5257108 | None:intergenic | 45.0% | |
| TGTAGGTATGTGATCGTTGG+CGG | - | chr4.4:5254455-5254474 | MS.gene89715:intron | 45.0% | |
| TGTTCACTCCTTCTCTTGCA+CGG | - | chr4.4:5256955-5256974 | MS.gene89715:intron | 45.0% | |
| TTCAAACCCACCCTCTCAAA+GGG | + | chr4.4:5257663-5257682 | None:intergenic | 45.0% | |
| ! | AACATGGGGGGTTCTAACAA+AGG | + | chr4.4:5257877-5257896 | None:intergenic | 45.0% |
| ! | AGAGGCGTAACATCTATGGA+AGG | + | chr4.4:5254344-5254363 | None:intergenic | 45.0% |
| ! | CGTAAGAGGCGTAACATCTA+TGG | + | chr4.4:5254348-5254367 | None:intergenic | 45.0% |
| ! | GAAGCCCTAGAAAAGTATGG+TGG | - | chr4.4:5258414-5258433 | MS.gene89715:intron | 45.0% |
| ! | GCGATTTTCATTCGCGTAAG+AGG | + | chr4.4:5254362-5254381 | None:intergenic | 45.0% |
| ! | GTGGATTATCTCTGAGCTTG+AGG | - | chr4.4:5258708-5258727 | MS.gene89715:CDS | 45.0% |
| !! | ATGTTGGTGGTATACAGGTG+AGG | - | chr4.4:5257688-5257707 | MS.gene89715:CDS | 45.0% |
| !! | CTGCCTAGTTTTCCAGAAAC+AGG | + | chr4.4:5258104-5258123 | None:intergenic | 45.0% |
| !! | GCTAGTTCTAATGGTAACGG+AGG | - | chr4.4:5257387-5257406 | MS.gene89715:intron | 45.0% |
| !! | TTCAGGTTGATGGTCTGTTC+CGG | - | chr4.4:5257969-5257988 | MS.gene89715:intron | 45.0% |
| AAATGCAACCTCAGTGGAGG+AGG | - | chr4.4:5259153-5259172 | MS.gene89715:CDS | 50.0% | |
| AGATTGAAGAACGGGGATGG+AGG | + | chr4.4:5257032-5257051 | None:intergenic | 50.0% | |
| ATCAATCGGAGGCTGTCTTC+TGG | + | chr4.4:5259119-5259138 | None:intergenic | 50.0% | |
| CAAAGCTTACTTGTTCCCGC+CGG | - | chr4.4:5254692-5254711 | MS.gene89715:intron | 50.0% | |
| CATACTTGTGTTGGATCCGG+TGG | - | chr4.4:5254860-5254879 | MS.gene89715:intron | 50.0% | |
| CTACAACCGGATTTCTCGAG+TGG | - | chr4.4:5258183-5258202 | MS.gene89715:intron | 50.0% | |
| GAAAGCGGCTACATCACCAA+CGG | + | chr4.4:5258017-5258036 | None:intergenic | 50.0% | |
| GCTGCTGTGAAACTTGGAGA+TGG | - | chr4.4:5257414-5257433 | MS.gene89715:intron | 50.0% | |
| GGACCAAATCAGCAGAAGCA+TGG | + | chr4.4:5258788-5258807 | None:intergenic | 50.0% | |
| GTTCTCTCAAACAGACTCGC+AGG | + | chr4.4:5254986-5255005 | None:intergenic | 50.0% | |
| TCGGGAGTTAAACCCATGCA+TGG | - | chr4.4:5256772-5256791 | MS.gene89715:intron | 50.0% | |
| ! | GCACCATGCTTCTGCTGATT+TGG | - | chr4.4:5258782-5258801 | MS.gene89715:intron | 50.0% |
| ! | TGTAGCCGCTTTCCCTTTGA+AGG | - | chr4.4:5258024-5258043 | MS.gene89715:intron | 50.0% |
| !! | GGTGTTGCTGCTGTGAAACT+TGG | - | chr4.4:5257408-5257427 | MS.gene89715:intron | 50.0% |
| !! | TGATGCGCTGGTTTCATCGT+TGG | - | chr4.4:5255785-5255804 | MS.gene89715:CDS | 50.0% |
| AGGAGGCCCTAGACATTGCT+CGG | - | chr4.4:5259170-5259189 | MS.gene89715:CDS | 55.0% | |
| AGGTATGTGATCGTTGGCGG+AGG | - | chr4.4:5254458-5254477 | MS.gene89715:intron | 55.0% | |
| ATTGGAGCGAAGCCTGCTGT+GGG | - | chr4.4:5257636-5257655 | MS.gene89715:CDS | 55.0% | |
| CGGAGTTTGCCTTTCTCCAC+CGG | + | chr4.4:5254879-5254898 | None:intergenic | 55.0% | |
| CGGCGGGAACAAGTAAGCTT+TGG | + | chr4.4:5254694-5254713 | None:intergenic | 55.0% | |
| CGGTGGAGAAAGGCAAACTC+CGG | - | chr4.4:5254877-5254896 | MS.gene89715:intron | 55.0% | |
| CTACGGGATGTACAGCCTCA+AGG | - | chr4.4:5255612-5255631 | MS.gene89715:intron | 55.0% | |
| CTGTTCCGGACAAGCATTCC+TGG | - | chr4.4:5257983-5258002 | MS.gene89715:intron | 55.0% | |
| GAGAAAGGCAAACTCCGGAG+TGG | - | chr4.4:5254882-5254901 | MS.gene89715:intron | 55.0% | |
| GGCTGTCTTCTGGCAAGTTC+AGG | + | chr4.4:5259109-5259128 | None:intergenic | 55.0% | |
| GTCTTCTGGCAAGTTCAGGC+AGG | + | chr4.4:5259105-5259124 | None:intergenic | 55.0% | |
| GTGTTGGATCCGGTGGAGAA+AGG | - | chr4.4:5254867-5254886 | MS.gene89715:intron | 55.0% | |
| TGGTATACAGGTGAGGCCAG+TGG | - | chr4.4:5257695-5257714 | MS.gene89715:CDS | 55.0% | |
| TGTTGAAAGTGGGAGCCCTG+AGG | - | chr4.4:5258861-5258880 | MS.gene89715:intron | 55.0% | |
| TGTTGCAGATGCTGATGCGC+TGG | - | chr4.4:5255773-5255792 | MS.gene89715:CDS | 55.0% | |
| TTGCTGCTGCAGCTGTTGCT+TGG | - | chr4.4:5256211-5256230 | MS.gene89715:intron | 55.0% | |
| ! | TGCTGTGGGTCCCTTTGAGA+GGG | - | chr4.4:5257650-5257669 | MS.gene89715:CDS | 55.0% |
| !! | AGACGTGCCGGCTTCTTATC+CGG | + | chr4.4:5254714-5254733 | None:intergenic | 55.0% |
| CATTGGAGCGAAGCCTGCTG+TGG | - | chr4.4:5257635-5257654 | MS.gene89715:CDS | 60.0% | |
| CTCTCAAAGGGACCCACAGC+AGG | + | chr4.4:5257651-5257670 | None:intergenic | 60.0% | |
| CTGCTGTGGGTCCCTTTGAG+AGG | - | chr4.4:5257649-5257668 | MS.gene89715:CDS | 60.0% | |
| GATCGTTGGCGGAGGAAACG+CGG | - | chr4.4:5254466-5254485 | MS.gene89715:intron | 60.0% | |
| GCTCGCACTTTCGTCGAGCA+CGG | - | chr4.4:5254500-5254519 | MS.gene89715:intron | 60.0% | |
| GGAGGCCCTAGACATTGCTC+GGG | - | chr4.4:5259171-5259190 | MS.gene89715:CDS | 60.0% | |
| GTTCCCGCCGGATAAGAAGC+CGG | - | chr4.4:5254704-5254723 | MS.gene89715:intron | 60.0% | |
| ! | GTGGGTCCCTTTGAGAGGGT+GGG | - | chr4.4:5257654-5257673 | MS.gene89715:CDS | 60.0% |
| ! | TGTGGGTCCCTTTGAGAGGG+TGG | - | chr4.4:5257653-5257672 | MS.gene89715:CDS | 60.0% |
| ! | GTCTAGGGCCTCCTCCACTG+AGG | + | chr4.4:5259164-5259183 | None:intergenic | 65.0% |
| !! | CGTGCCGGCTTCTTATCCGG+CGG | + | chr4.4:5254711-5254730 | None:intergenic | 65.0% |
| !! | GTGCCGGCTTCTTATCCGGC+GGG | + | chr4.4:5254710-5254729 | None:intergenic | 65.0% |
| CGTTGGCGGAGGAAACGCGG+CGG | - | chr4.4:5254469-5254488 | MS.gene89715:intron | 70.0% | |
| GTTGGCGGAGGAAACGCGGC+GGG | - | chr4.4:5254470-5254489 | MS.gene89715:intron | 70.0% | |
| GTCGAGCACGGCGTCGCCGA+TGG | - | chr4.4:5254512-5254531 | MS.gene89715:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5254223 | 5259216 | 5254223 | ID=MS.gene89715 |
| chr4.4 | mRNA | 5254223 | 5259216 | 5254223 | ID=MS.gene89715.t1;Parent=MS.gene89715 |
| chr4.4 | exon | 5259056 | 5259216 | 5259056 | ID=MS.gene89715.t1.exon1;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5259056 | 5259216 | 5259056 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5258880 | 5258979 | 5258880 | ID=MS.gene89715.t1.exon2;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5258880 | 5258979 | 5258880 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5258702 | 5258779 | 5258702 | ID=MS.gene89715.t1.exon3;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5258702 | 5258779 | 5258702 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5258514 | 5258585 | 5258514 | ID=MS.gene89715.t1.exon4;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5258514 | 5258585 | 5258514 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5257806 | 5257924 | 5257806 | ID=MS.gene89715.t1.exon5;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5257806 | 5257924 | 5257806 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5257633 | 5257717 | 5257633 | ID=MS.gene89715.t1.exon6;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5257633 | 5257717 | 5257633 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5257191 | 5257280 | 5257191 | ID=MS.gene89715.t1.exon7;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5257191 | 5257280 | 5257191 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5256417 | 5256518 | 5256417 | ID=MS.gene89715.t1.exon8;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5256417 | 5256518 | 5256417 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5255981 | 5256076 | 5255981 | ID=MS.gene89715.t1.exon9;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5255981 | 5256076 | 5255981 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5255735 | 5255815 | 5255735 | ID=MS.gene89715.t1.exon10;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5255735 | 5255815 | 5255735 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5255394 | 5255465 | 5255394 | ID=MS.gene89715.t1.exon11;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5255394 | 5255465 | 5255394 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5255164 | 5255258 | 5255164 | ID=MS.gene89715.t1.exon12;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5255164 | 5255258 | 5255164 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5254984 | 5255072 | 5254984 | ID=MS.gene89715.t1.exon13;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5254984 | 5255072 | 5254984 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5254769 | 5254831 | 5254769 | ID=MS.gene89715.t1.exon14;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5254769 | 5254831 | 5254769 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5254557 | 5254597 | 5254557 | ID=MS.gene89715.t1.exon15;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5254557 | 5254597 | 5254557 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| chr4.4 | exon | 5254223 | 5254348 | 5254223 | ID=MS.gene89715.t1.exon16;Parent=MS.gene89715.t1 |
| chr4.4 | CDS | 5254223 | 5254348 | 5254223 | ID=cds.MS.gene89715.t1;Parent=MS.gene89715.t1 |
| Gene Sequence |
| Protein sequence |
