Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89892.t1 | ACJ84726.1 | 94.8 | 233 | 12 | 0 | 1 | 233 | 31 | 263 | 8.00E-122 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89892.t1 | P50165 | 57.1 | 233 | 100 | 0 | 1 | 233 | 31 | 263 | 8.5e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89892.t1 | B7FIZ7 | 94.8 | 233 | 12 | 0 | 1 | 233 | 31 | 263 | 5.8e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene89892 | 0.83127 | 1.84E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTGGTGCATTGATTAA+TGG | 0.234202 | 7.3:+42058522 | None:intergenic |
| ATATTCCAATGCTATGTTCT+TGG | 0.241471 | 7.3:+42058507 | None:intergenic |
| GTGGAAGAGTTGGCAGAATT+TGG | 0.288532 | 7.3:-42060993 | MS.gene89892:CDS |
| ATAATAAAACATACCTTTAG+AGG | 0.312423 | 7.3:+42058646 | None:intergenic |
| CGTGCAAATGTTGTCGCACC+TGG | 0.331230 | 7.3:-42058469 | MS.gene89892:CDS |
| AAGAACATAGCATTGGAATA+TGG | 0.331460 | 7.3:-42058505 | MS.gene89892:CDS |
| CAGGCCTAAAATAGAAGATA+TGG | 0.345798 | 7.3:+42058700 | None:intergenic |
| ACCAAAGCTGATATGTCTTT+AGG | 0.346420 | 7.3:+42057600 | None:intergenic |
| AGATGATATTAACAAATGTT+TGG | 0.374991 | 7.3:-42060940 | MS.gene89892:CDS |
| TGAAGATGTGACAAATATAA+TGG | 0.380271 | 7.3:-42058804 | MS.gene89892:CDS |
| TCCATGACCTTCGGAGCATC+GGG | 0.387122 | 7.3:+42057663 | None:intergenic |
| GTATATTCTAGCATCGTCTT+AGG | 0.387261 | 7.3:+42058830 | None:intergenic |
| GGATACAATGCTCCCGTATC+CGG | 0.410786 | 7.3:+42058721 | None:intergenic |
| TTAACAAATGTTTGGAAGAG+TGG | 0.416511 | 7.3:-42060932 | MS.gene89892:CDS |
| ACCTAAAGACATATCAGCTT+TGG | 0.423637 | 7.3:-42057601 | MS.gene89892:CDS |
| GGTTGTGCCACACGACTGAT+AGG | 0.438269 | 7.3:+42057621 | None:intergenic |
| GTTGATGGAAACTGTTGCTT+CGG | 0.441499 | 7.3:-42060844 | MS.gene89892:CDS |
| TCTATTTATGCAGCCTCTAA+AGG | 0.448351 | 7.3:-42058659 | MS.gene89892:intron |
| TTCCATGACCTTCGGAGCAT+CGG | 0.452281 | 7.3:+42057662 | None:intergenic |
| ATCTGTTAGGTGAATAATGC+TGG | 0.454547 | 7.3:-42058863 | MS.gene89892:intron |
| ATCTGCAGCTATAATCTGTC+CGG | 0.490891 | 7.3:+42057542 | None:intergenic |
| ATCAATCAGGTATGCAATTG+TGG | 0.492239 | 7.3:-42061012 | None:intergenic |
| AACAAAGAGGAACAGATCTC+AGG | 0.503248 | 7.3:+42058681 | None:intergenic |
| ACTGTTGCTTCGGTCTTCGA+TGG | 0.504556 | 7.3:-42060834 | MS.gene89892:CDS |
| GAAGATGTGACAAATATAAT+GGG | 0.512454 | 7.3:-42058803 | MS.gene89892:CDS |
| ATTACAACTTCCATGACCTT+CGG | 0.518760 | 7.3:+42057654 | None:intergenic |
| AACGTGGTCATTACTGCCCC+AGG | 0.525729 | 7.3:+42058451 | None:intergenic |
| GTATGCAATTGTGGAAGAGT+TGG | 0.535529 | 7.3:-42061003 | MS.gene89892:CDS |
| CCCCGATGCTCCGAAGGTCA+TGG | 0.541391 | 7.3:-42057664 | MS.gene89892:CDS |
| ATGCACCAAGAACATAGCAT+TGG | 0.554507 | 7.3:-42058512 | MS.gene89892:CDS |
| TTGGAAGAGTGGAAAGGCAA+AGG | 0.565426 | 7.3:-42060921 | MS.gene89892:CDS |
| GTGCAAATGTTGTCGCACCT+GGG | 0.574156 | 7.3:-42058468 | MS.gene89892:CDS |
| CCAGCTGCTTCATATATCAC+CGG | 0.590790 | 7.3:-42057561 | MS.gene89892:CDS |
| GGAACACCCCGATGCTCCGA+AGG | 0.591459 | 7.3:-42057670 | MS.gene89892:CDS |
| CAGATTATAGCTGCAGATGG+TGG | 0.591683 | 7.3:-42057537 | MS.gene89892:CDS |
| TGCAAATGTTGTCGCACCTG+GGG | 0.595217 | 7.3:-42058467 | MS.gene89892:CDS |
| CCGGTGATATATGAAGCAGC+TGG | 0.615845 | 7.3:+42057561 | None:intergenic |
| AAATGTTTGGAAGAGTGGAA+AGG | 0.633316 | 7.3:-42060927 | MS.gene89892:CDS |
| GGACAGATTATAGCTGCAGA+TGG | 0.635577 | 7.3:-42057540 | MS.gene89892:CDS |
| GGTGTGCAAGTTGACACAAA+TGG | 0.648867 | 7.3:+42058759 | None:intergenic |
| GCTGCATAAATAGAACAAAG+AGG | 0.663140 | 7.3:+42058668 | None:intergenic |
| TCAAACACCTATCAGTCGTG+TGG | 0.683164 | 7.3:-42057628 | MS.gene89892:CDS |
| TCTGTTAGGTGAATAATGCT+GGG | 0.689049 | 7.3:-42058862 | MS.gene89892:intron |
| CCATGACCTTCGGAGCATCG+GGG | 0.716783 | 7.3:+42057664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGACAATTAAAAAAAT+AGG | + | chr7.3:42057761-42057780 | None:intergenic | 10.0% |
| !! | CAAAATACTTAAAAAAAAAA+AGG | - | chr7.3:42058842-42058861 | MS.gene89892:CDS | 10.0% |
| !! | TAAAAAATAAAATTGTTACT+AGG | + | chr7.3:42060793-42060812 | None:intergenic | 10.0% |
| !! | TTGGTAAAAATAATAATTAA+TGG | - | chr7.3:42059272-42059291 | MS.gene89892:intron | 10.0% |
| !!! | GCATATTTTATTTTAAAAAA+TGG | - | chr7.3:42059638-42059657 | MS.gene89892:intron | 10.0% |
| !! | AAATAGAATGAAATAATCAT+TGG | + | chr7.3:42058136-42058155 | None:intergenic | 15.0% |
| !! | AACTAAATATCTTTGATAAA+AGG | + | chr7.3:42059233-42059252 | None:intergenic | 15.0% |
| !! | AATGTTGACAAAAATTATAT+TGG | - | chr7.3:42059253-42059272 | MS.gene89892:intron | 15.0% |
| !! | ACTAATATTTGTCTATATAA+AGG | - | chr7.3:42058779-42058798 | MS.gene89892:CDS | 15.0% |
| !! | ATTCTTCTACAAATTATTAT+AGG | - | chr7.3:42060836-42060855 | MS.gene89892:CDS | 15.0% |
| !! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr7.3:42058010-42058029 | None:intergenic | 15.0% |
| !! | TAGTATACATGTATATTATA+AGG | - | chr7.3:42059928-42059947 | MS.gene89892:intron | 15.0% |
| !! | TATGTTATTATAAATAGCAA+CGG | + | chr7.3:42059096-42059115 | None:intergenic | 15.0% |
| !! | TCAAAATAGTCATATATTTA+AGG | + | chr7.3:42059132-42059151 | None:intergenic | 15.0% |
| !! | TGTATACTAGATTTAATAAA+AGG | + | chr7.3:42059917-42059936 | None:intergenic | 15.0% |
| !!! | CAGTTTTTTTTTTTTTTTGA+AGG | + | chr7.3:42058415-42058434 | None:intergenic | 15.0% |
| !!! | CATTTCAATTTTTTTACAAA+AGG | - | chr7.3:42058868-42058887 | MS.gene89892:intron | 15.0% |
| !!! | CTTTTGTAAAAAAATTGAAA+TGG | + | chr7.3:42058870-42058889 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGATTACTTTTTT+AGG | - | chr7.3:42058680-42058699 | MS.gene89892:CDS | 15.0% |
| !!! | TACTTTTAATACATTGTTTA+AGG | + | chr7.3:42060675-42060694 | None:intergenic | 15.0% |
| !! | AAATCATCTTGCAAATAAAA+AGG | + | chr7.3:42058486-42058505 | None:intergenic | 20.0% |
| !! | ACAAAATTATCCTTCATTAA+TGG | - | chr7.3:42060405-42060424 | MS.gene89892:intron | 20.0% |
| !! | ACGATAGTATATTAATTACT+TGG | - | chr7.3:42058902-42058921 | MS.gene89892:intron | 20.0% |
| !! | AGATGATATTAACAAATGTT+TGG | - | chr7.3:42057587-42057606 | MS.gene89892:CDS | 20.0% |
| !! | ATAATAAAACATACCTTTAG+AGG | + | chr7.3:42059884-42059903 | None:intergenic | 20.0% |
| !! | ATGATAAGGACATAAATATA+CGG | - | chr7.3:42058347-42058366 | MS.gene89892:intron | 20.0% |
| !! | ATGTGTAATTAATGTTGTAT+TGG | - | chr7.3:42060359-42060378 | MS.gene89892:intron | 20.0% |
| !! | GTTAAAACGTCATATAATTT+AGG | + | chr7.3:42060339-42060358 | None:intergenic | 20.0% |
| !! | TATATTTATGTCCTTATCAT+AGG | + | chr7.3:42058347-42058366 | None:intergenic | 20.0% |
| !! | TATGAAATTGATCTATGTAA+AGG | - | chr7.3:42059980-42059999 | MS.gene89892:intron | 20.0% |
| !! | TGAAACTAATATAGACAATT+TGG | - | chr7.3:42058538-42058557 | MS.gene89892:intron | 20.0% |
| !! | TGACACTAATCATATAAATA+GGG | + | chr7.3:42059442-42059461 | None:intergenic | 20.0% |
| !! | TTGACACTAATCATATAAAT+AGG | + | chr7.3:42059443-42059462 | None:intergenic | 20.0% |
| !! | TTTATTTACCTATCAACAAA+CGG | - | chr7.3:42057832-42057851 | MS.gene89892:intron | 20.0% |
| !!! | AATTAGTTCTCTTATGTTTA+AGG | - | chr7.3:42060141-42060160 | MS.gene89892:intron | 20.0% |
| !!! | ACTTGGAGAAAAATATTTTA+AGG | - | chr7.3:42058919-42058938 | MS.gene89892:intron | 20.0% |
| !!! | GTCTTTTTCTTATAAAGTAA+GGG | - | chr7.3:42058088-42058107 | MS.gene89892:intron | 20.0% |
| !!! | TACTACGAATTTTCTAAAAA+TGG | - | chr7.3:42059069-42059088 | MS.gene89892:intron | 20.0% |
| !!! | TCTTTTCTTATATTTAAGAC+CGG | + | chr7.3:42058670-42058689 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTCTTATAAAGTA+AGG | - | chr7.3:42058087-42058106 | MS.gene89892:intron | 20.0% |
| !!! | TTTAAGGTTCTTTTTTTCTA+GGG | - | chr7.3:42060157-42060176 | MS.gene89892:intron | 20.0% |
| !!! | TTTTCCTTCTATATTTATGT+CGG | - | chr7.3:42060705-42060724 | MS.gene89892:intron | 20.0% |
| ! | AAACGTCATATAATTTAGGA+CGG | + | chr7.3:42060335-42060354 | None:intergenic | 25.0% |
| ! | AACTAATATAGACAATTTGG+AGG | - | chr7.3:42058541-42058560 | MS.gene89892:intron | 25.0% |
| ! | ATGGAGTATATATATAGCTT+TGG | + | chr7.3:42060312-42060331 | None:intergenic | 25.0% |
| ! | CTTTCTTATACCATTAATGA+AGG | + | chr7.3:42060418-42060437 | None:intergenic | 25.0% |
| ! | GAAGATGTGACAAATATAAT+GGG | - | chr7.3:42059724-42059743 | MS.gene89892:intron | 25.0% |
| ! | GACACTAATCATATAAATAG+GGG | + | chr7.3:42059441-42059460 | None:intergenic | 25.0% |
| ! | TAAAAAATGGTTGATCTGTT+AGG | - | chr7.3:42059651-42059670 | MS.gene89892:intron | 25.0% |
| ! | TGAAGATGTGACAAATATAA+TGG | - | chr7.3:42059723-42059742 | MS.gene89892:intron | 25.0% |
| ! | TGAGTTAGATTGTTTCAAAA+TGG | - | chr7.3:42058968-42058987 | MS.gene89892:intron | 25.0% |
| ! | TGATAAGGACATAAATATAC+GGG | - | chr7.3:42058348-42058367 | MS.gene89892:intron | 25.0% |
| ! | TTAATTAGTTGCCTATGATA+AGG | - | chr7.3:42058333-42058352 | MS.gene89892:intron | 25.0% |
| ! | TTTGAAGAACAAAAATTCAG+AGG | - | chr7.3:42059147-42059166 | MS.gene89892:intron | 25.0% |
| !! | GTATCCATATCTTCTATTTT+AGG | - | chr7.3:42059823-42059842 | MS.gene89892:intron | 25.0% |
| !! | GTCAATTGAACAAGTTTTTA+TGG | - | chr7.3:42058616-42058635 | MS.gene89892:intron | 25.0% |
| !! | TTGATAGCTTACAAACTTTA+AGG | - | chr7.3:42059481-42059500 | MS.gene89892:intron | 25.0% |
| !! | TTGTCTATATTAGTTTCAAG+TGG | + | chr7.3:42058536-42058555 | None:intergenic | 25.0% |
| !!! | AAGTGACACTCATTTTAAAA+CGG | - | chr7.3:42058179-42058198 | MS.gene89892:intron | 25.0% |
| !!! | GTTTAAGGTTCTTTTTTTCT+AGG | - | chr7.3:42060156-42060175 | MS.gene89892:intron | 25.0% |
| !!! | TTTAAAATGAGTGTCACTTT+AGG | + | chr7.3:42058178-42058197 | None:intergenic | 25.0% |
| AAAATTCAGAGGACTTGAAA+AGG | - | chr7.3:42059158-42059177 | MS.gene89892:intron | 30.0% | |
| AAACGACTTATAGTTTGAGA+CGG | - | chr7.3:42060545-42060564 | MS.gene89892:intron | 30.0% | |
| AAATTGTGTGAGAGAAAAGT+TGG | + | chr7.3:42058050-42058069 | None:intergenic | 30.0% | |
| AGAACCGACATAAATATAGA+AGG | + | chr7.3:42060712-42060731 | None:intergenic | 30.0% | |
| AGTGGGACTAATTAATAATG+TGG | + | chr7.3:42059561-42059580 | None:intergenic | 30.0% | |
| ATATTCCAATGCTATGTTCT+TGG | + | chr7.3:42060023-42060042 | None:intergenic | 30.0% | |
| GTTGTATTGGAAATGTAAAG+CGG | + | chr7.3:42057997-42058016 | None:intergenic | 30.0% | |
| TAGACAAATCCAAATCATGT+TGG | + | chr7.3:42059022-42059041 | None:intergenic | 30.0% | |
| TATCAACCATTTGAAAGTTG+AGG | + | chr7.3:42059467-42059486 | None:intergenic | 30.0% | |
| TATTTGTCTTTCCCTGTTTA+TGG | - | chr7.3:42057899-42057918 | MS.gene89892:intron | 30.0% | |
| TCTTTCACTCATGTTCAAAT+CGG | + | chr7.3:42058569-42058588 | None:intergenic | 30.0% | |
| TTAACAAATGTTTGGAAGAG+TGG | - | chr7.3:42057595-42057614 | MS.gene89892:CDS | 30.0% | |
| ! | AAGAACATAGCATTGGAATA+TGG | - | chr7.3:42060022-42060041 | MS.gene89892:intron | 30.0% |
| ! | ATAACTTTTCGAATCTCCTT+CGG | + | chr7.3:42058457-42058476 | None:intergenic | 30.0% |
| ! | ATCTAGTCTATATTTGAGAC+CGG | - | chr7.3:42058722-42058741 | MS.gene89892:CDS | 30.0% |
| ! | TTCTTATATTTAAGACCGGA+GGG | + | chr7.3:42058666-42058685 | None:intergenic | 30.0% |
| ! | TTTCCATCAACTTTTTACGT+TGG | + | chr7.3:42057674-42057693 | None:intergenic | 30.0% |
| ! | TTTCTTATATTTAAGACCGG+AGG | + | chr7.3:42058667-42058686 | None:intergenic | 30.0% |
| !! | ACGAAAGAGTTTTATCTACA+AGG | - | chr7.3:42059343-42059362 | MS.gene89892:intron | 30.0% |
| !! | AGTTTTATCTACAAGGATGA+AGG | - | chr7.3:42059350-42059369 | MS.gene89892:intron | 30.0% |
| !! | ATCCGGATTCTTTTAAAAGT+GGG | + | chr7.3:42059792-42059811 | None:intergenic | 30.0% |
| !! | CTTTTAAAAGAATCCGGATA+CGG | - | chr7.3:42059793-42059812 | MS.gene89892:intron | 30.0% |
| !! | GACTTTAAAATTCGAAAGAG+AGG | - | chr7.3:42059294-42059313 | MS.gene89892:intron | 30.0% |
| !! | TATCCGGATTCTTTTAAAAG+TGG | + | chr7.3:42059793-42059812 | None:intergenic | 30.0% |
| !! | TTTTAAAAGAATCCGGATAC+GGG | - | chr7.3:42059794-42059813 | MS.gene89892:intron | 30.0% |
| AAATGTTTGGAAGAGTGGAA+AGG | - | chr7.3:42057600-42057619 | MS.gene89892:CDS | 35.0% | |
| AAGAGAGCAATAAATTGCTG+AGG | - | chr7.3:42060450-42060469 | MS.gene89892:intron | 35.0% | |
| ACCAAAGCTGATATGTCTTT+AGG | + | chr7.3:42060930-42060949 | None:intergenic | 35.0% | |
| ACCTAAAGACATATCAGCTT+TGG | - | chr7.3:42060926-42060945 | MS.gene89892:CDS | 35.0% | |
| ACTATGTCGTCGATATTGTT+AGG | + | chr7.3:42058598-42058617 | None:intergenic | 35.0% | |
| AGGTCCAATAGAATAAGTAG+TGG | + | chr7.3:42059579-42059598 | None:intergenic | 35.0% | |
| AGTCCCACTACTTATTCTAT+TGG | - | chr7.3:42059572-42059591 | MS.gene89892:intron | 35.0% | |
| ATCAGATGTTCAATACAACG+AGG | + | chr7.3:42059599-42059618 | None:intergenic | 35.0% | |
| ATCTGTTAGGTGAATAATGC+TGG | - | chr7.3:42059664-42059683 | MS.gene89892:intron | 35.0% | |
| ATTACAACTTCCATGACCTT+CGG | + | chr7.3:42060876-42060895 | None:intergenic | 35.0% | |
| ATTTACCTATCAACAAACGG+TGG | - | chr7.3:42057835-42057854 | MS.gene89892:intron | 35.0% | |
| ATTTGTCTTCCACCATAAAC+AGG | + | chr7.3:42057914-42057933 | None:intergenic | 35.0% | |
| CAAAATAGACTCCAAAAACG+TGG | + | chr7.3:42060095-42060114 | None:intergenic | 35.0% | |
| CAGGCCTAAAATAGAAGATA+TGG | + | chr7.3:42059830-42059849 | None:intergenic | 35.0% | |
| CGATATCTACCAACATGATT+TGG | - | chr7.3:42059010-42059029 | MS.gene89892:intron | 35.0% | |
| GATTGATGTCAACTCAACAT+GGG | - | chr7.3:42058219-42058238 | MS.gene89892:intron | 35.0% | |
| GCTGCATAAATAGAACAAAG+AGG | + | chr7.3:42059862-42059881 | None:intergenic | 35.0% | |
| GGTCCAATAGAATAAGTAGT+GGG | + | chr7.3:42059578-42059597 | None:intergenic | 35.0% | |
| GTATATTCTAGCATCGTCTT+AGG | + | chr7.3:42059700-42059719 | None:intergenic | 35.0% | |
| TAATCGACGACAAGTAAATG+AGG | - | chr7.3:42059511-42059530 | MS.gene89892:intron | 35.0% | |
| TATTCGATTAGACAGCTTTC+TGG | + | chr7.3:42060740-42060759 | None:intergenic | 35.0% | |
| TCTATTTATGCAGCCTCTAA+AGG | - | chr7.3:42059868-42059887 | MS.gene89892:intron | 35.0% | |
| TCTGTTAGGTGAATAATGCT+GGG | - | chr7.3:42059665-42059684 | MS.gene89892:intron | 35.0% | |
| TCTTATAGCATTAGCGCTTA+TGG | - | chr7.3:42060272-42060291 | MS.gene89892:intron | 35.0% | |
| TGACCAACGTAAAAAGTTGA+TGG | - | chr7.3:42057668-42057687 | MS.gene89892:CDS | 35.0% | |
| TGATTGATGTCAACTCAACA+TGG | - | chr7.3:42058218-42058237 | MS.gene89892:intron | 35.0% | |
| TTTGTCTTCCACCATAAACA+GGG | + | chr7.3:42057913-42057932 | None:intergenic | 35.0% | |
| ! | ATTTTTAACCATACTCCCTC+CGG | - | chr7.3:42058648-42058667 | MS.gene89892:intron | 35.0% |
| ! | GTCATATAATTTAGGACGGA+TGG | + | chr7.3:42060331-42060350 | None:intergenic | 35.0% |
| ! | TTTATCCACCGTTTGTTGAT+AGG | + | chr7.3:42057843-42057862 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr7.3:42057944-42057963 | None:intergenic | 35.0% |
| !! | CACCCACTTTTAAAAGAATC+CGG | - | chr7.3:42059787-42059806 | MS.gene89892:intron | 35.0% |
| !! | GTTCTTGGTGCATTGATTAA+TGG | + | chr7.3:42060008-42060027 | None:intergenic | 35.0% |
| !!! | CACGTTTTTGGAGTCTATTT+TGG | - | chr7.3:42060093-42060112 | MS.gene89892:intron | 35.0% |
| !!! | TGACACTCATTTTAAAACGG+AGG | - | chr7.3:42058182-42058201 | MS.gene89892:intron | 35.0% |
| AAAGTTGGAGAGGGTAAAGT+TGG | + | chr7.3:42058035-42058054 | None:intergenic | 40.0% | |
| AACAAAGAGGAACAGATCTC+AGG | + | chr7.3:42059849-42059868 | None:intergenic | 40.0% | |
| ACCCATCTTCCATCGATAAA+AGG | + | chr7.3:42058257-42058276 | None:intergenic | 40.0% | |
| ATCTGCAGCTATAATCTGTC+CGG | + | chr7.3:42060988-42061007 | None:intergenic | 40.0% | |
| ATGCACCAAGAACATAGCAT+TGG | - | chr7.3:42060015-42060034 | MS.gene89892:intron | 40.0% | |
| CCATCTTCCATCGATAAAAG+GGG | + | chr7.3:42058255-42058274 | None:intergenic | 40.0% | |
| CCCATCTTCCATCGATAAAA+GGG | + | chr7.3:42058256-42058275 | None:intergenic | 40.0% | |
| GTATGCAATTGTGGAAGAGT+TGG | - | chr7.3:42057524-42057543 | MS.gene89892:CDS | 40.0% | |
| GTCAAGCCTCAACTTTCAAA+TGG | - | chr7.3:42059458-42059477 | MS.gene89892:intron | 40.0% | |
| TGTGAGAGAAAAGTTGGAGA+GGG | + | chr7.3:42058044-42058063 | None:intergenic | 40.0% | |
| TTCAGAGGACTTGAAAAGGT+TGG | - | chr7.3:42059162-42059181 | MS.gene89892:intron | 40.0% | |
| TTGTCTTTCCCTGTTTATGG+TGG | - | chr7.3:42057902-42057921 | MS.gene89892:intron | 40.0% | |
| ! | CCCTTTTATCGATGGAAGAT+GGG | - | chr7.3:42058253-42058272 | MS.gene89892:intron | 40.0% |
| ! | GCAAAGGATTTTGTGTGACA+GGG | - | chr7.3:42057622-42057641 | MS.gene89892:CDS | 40.0% |
| ! | GTTGATGGAAACTGTTGCTT+CGG | - | chr7.3:42057683-42057702 | MS.gene89892:intron | 40.0% |
| ! | TAGTCTATATTTGAGACCGG+AGG | - | chr7.3:42058725-42058744 | MS.gene89892:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7.3:42057940-42057959 | None:intergenic | 40.0% |
| CAGATTATAGCTGCAGATGG+TGG | - | chr7.3:42060990-42061009 | MS.gene89892:CDS | 45.0% | |
| CCAGCTGCTTCATATATCAC+CGG | - | chr7.3:42060966-42060985 | MS.gene89892:CDS | 45.0% | |
| GGACAGATTATAGCTGCAGA+TGG | - | chr7.3:42060987-42061006 | MS.gene89892:CDS | 45.0% | |
| GTGGAAGAGTTGGCAGAATT+TGG | - | chr7.3:42057534-42057553 | MS.gene89892:CDS | 45.0% | |
| GTGTGAGAGAAAAGTTGGAG+AGG | + | chr7.3:42058045-42058064 | None:intergenic | 45.0% | |
| TCAAACACCTATCAGTCGTG+TGG | - | chr7.3:42060899-42060918 | MS.gene89892:CDS | 45.0% | |
| TGTGTTAACAGCTACTCCTC+CGG | + | chr7.3:42058744-42058763 | None:intergenic | 45.0% | |
| TTCCATCGATAAAAGGGGAG+TGG | + | chr7.3:42058250-42058269 | None:intergenic | 45.0% | |
| TTGGAAGAGTGGAAAGGCAA+AGG | - | chr7.3:42057606-42057625 | MS.gene89892:CDS | 45.0% | |
| ! | ATTTAAGACCGGAGGGAGTA+TGG | + | chr7.3:42058659-42058678 | None:intergenic | 45.0% |
| ! | CCCCTTTTATCGATGGAAGA+TGG | - | chr7.3:42058252-42058271 | MS.gene89892:intron | 45.0% |
| ! | GGCAAAGGATTTTGTGTGAC+AGG | - | chr7.3:42057621-42057640 | MS.gene89892:CDS | 45.0% |
| ! | GGCAGTAATGACCACGTTTT+TGG | - | chr7.3:42060081-42060100 | MS.gene89892:intron | 45.0% |
| ! | GGTGTGCAAGTTGACACAAA+TGG | + | chr7.3:42059771-42059790 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7.3:42057941-42057960 | None:intergenic | 45.0% |
| !! | ATTCTATTAAAATAATTAAA+AGG | - | chr7.3:42059044-42059063 | MS.gene89892:intron | 5.0% |
| !! | TACAATTTAATAAAATATTA+TGG | - | chr7.3:42059403-42059422 | MS.gene89892:intron | 5.0% |
| AGCATTAGCGCTTATGGCAC+TGG | - | chr7.3:42060278-42060297 | MS.gene89892:intron | 50.0% | |
| AGGTAGCTCACGCTCTTGTT+AGG | - | chr7.3:42059531-42059550 | MS.gene89892:intron | 50.0% | |
| CCGGTGATATATGAAGCAGC+TGG | + | chr7.3:42060969-42060988 | None:intergenic | 50.0% | |
| GGATACAATGCTCCCGTATC+CGG | + | chr7.3:42059809-42059828 | None:intergenic | 50.0% | |
| GGTAGCTCACGCTCTTGTTA+GGG | - | chr7.3:42059532-42059551 | MS.gene89892:intron | 50.0% | |
| GTGCAAATGTTGTCGCACCT+GGG | - | chr7.3:42060059-42060078 | MS.gene89892:intron | 50.0% | |
| TGCAAATGTTGTCGCACCTG+GGG | - | chr7.3:42060060-42060079 | MS.gene89892:intron | 50.0% | |
| TTCCATGACCTTCGGAGCAT+CGG | + | chr7.3:42060868-42060887 | None:intergenic | 50.0% | |
| ! | ACTGTTGCTTCGGTCTTCGA+TGG | - | chr7.3:42057693-42057712 | MS.gene89892:intron | 50.0% |
| ! | CTCCACTCCCCTTTTATCGA+TGG | - | chr7.3:42058245-42058264 | MS.gene89892:intron | 50.0% |
| AACGTGGTCATTACTGCCCC+AGG | + | chr7.3:42060079-42060098 | None:intergenic | 55.0% | |
| CGTGCAAATGTTGTCGCACC+TGG | - | chr7.3:42060058-42060077 | MS.gene89892:intron | 55.0% | |
| GCTCTAGTGTTTGCGTCCGA+AGG | - | chr7.3:42058438-42058457 | MS.gene89892:CDS | 55.0% | |
| GGTTGTGCCACACGACTGAT+AGG | + | chr7.3:42060909-42060928 | None:intergenic | 55.0% | |
| ! | TCCATGACCTTCGGAGCATC+GGG | + | chr7.3:42060867-42060886 | None:intergenic | 55.0% |
| !! | CCATGACCTTCGGAGCATCG+GGG | + | chr7.3:42060866-42060885 | None:intergenic | 60.0% |
| CCCCGATGCTCCGAAGGTCA+TGG | - | chr7.3:42060863-42060882 | MS.gene89892:CDS | 65.0% | |
| GGAACACCCCGATGCTCCGA+AGG | - | chr7.3:42060857-42060876 | MS.gene89892:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 42057524 | 42061025 | 42057524 | ID=MS.gene89892 |
| chr7.3 | mRNA | 42057524 | 42061025 | 42057524 | ID=MS.gene89892.t1;Parent=MS.gene89892 |
| chr7.3 | exon | 42060818 | 42061025 | 42060818 | ID=MS.gene89892.t1.exon1;Parent=MS.gene89892.t1 |
| chr7.3 | CDS | 42060818 | 42061025 | 42060818 | ID=cds.MS.gene89892.t1;Parent=MS.gene89892.t1 |
| chr7.3 | exon | 42058660 | 42058876 | 42058660 | ID=MS.gene89892.t1.exon2;Parent=MS.gene89892.t1 |
| chr7.3 | CDS | 42058660 | 42058876 | 42058660 | ID=cds.MS.gene89892.t1;Parent=MS.gene89892.t1 |
| chr7.3 | exon | 42058435 | 42058547 | 42058435 | ID=MS.gene89892.t1.exon3;Parent=MS.gene89892.t1 |
| chr7.3 | CDS | 42058435 | 42058547 | 42058435 | ID=cds.MS.gene89892.t1;Parent=MS.gene89892.t1 |
| chr7.3 | exon | 42057524 | 42057691 | 42057524 | ID=MS.gene89892.t1.exon4;Parent=MS.gene89892.t1 |
| chr7.3 | CDS | 42057524 | 42057691 | 42057524 | ID=cds.MS.gene89892.t1;Parent=MS.gene89892.t1 |
| Gene Sequence |
| Protein sequence |
