Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90188.t1 | XP_003608450.1 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 2.50E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90188.t1 | Q9FE06 | 70.6 | 310 | 76 | 5 | 1 | 300 | 1 | 305 | 1.1e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90188.t1 | G7JCS2 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 1.8e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053547 | MS.gene90188 | 0.962291 | 1.06E-120 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90188.t1 | MTR_4g094240 | 98.333 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 0.0 | 602 |
| MS.gene90188.t1 | MTR_2g009070 | 67.213 | 305 | 94 | 5 | 1 | 300 | 1 | 304 | 1.02e-152 | 429 |
| MS.gene90188.t1 | MTR_5g464340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene90188.t1 | MTR_5g064340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene90188.t1 | MTR_5g064345 | 58.544 | 316 | 114 | 6 | 1 | 300 | 1 | 315 | 4.19e-123 | 355 |
| MS.gene90188.t1 | MTR_3g074830 | 58.934 | 319 | 110 | 5 | 1 | 300 | 29 | 345 | 4.34e-123 | 356 |
| MS.gene90188.t1 | MTR_5g064360 | 58.900 | 309 | 110 | 6 | 7 | 300 | 10 | 316 | 5.35e-122 | 352 |
| MS.gene90188.t1 | MTR_3g074860 | 59.783 | 276 | 102 | 3 | 30 | 300 | 33 | 304 | 3.95e-119 | 344 |
| MS.gene90188.t1 | MTR_3g074890 | 59.420 | 276 | 103 | 4 | 30 | 300 | 33 | 304 | 5.74e-118 | 341 |
| MS.gene90188.t1 | MTR_4g033790 | 37.050 | 278 | 157 | 7 | 35 | 296 | 65 | 340 | 7.93e-46 | 158 |
| MS.gene90188.t1 | MTR_1g076470 | 37.500 | 280 | 154 | 7 | 35 | 296 | 64 | 340 | 4.04e-44 | 154 |
| MS.gene90188.t1 | MTR_8g071310 | 57.500 | 80 | 28 | 2 | 227 | 300 | 6 | 85 | 1.28e-23 | 92.4 |
| MS.gene90188.t1 | MTR_8g088900 | 52.222 | 90 | 43 | 0 | 211 | 300 | 283 | 372 | 3.16e-21 | 92.8 |
| MS.gene90188.t1 | MTR_4g013230 | 62.121 | 66 | 22 | 1 | 235 | 300 | 78 | 140 | 4.28e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90188.t1 | AT5G64260 | 70.874 | 309 | 77 | 5 | 1 | 300 | 1 | 305 | 4.28e-154 | 433 |
| MS.gene90188.t1 | AT5G09440 | 62.829 | 304 | 83 | 8 | 1 | 300 | 1 | 278 | 1.87e-124 | 357 |
| MS.gene90188.t1 | AT4G08950 | 58.249 | 297 | 107 | 5 | 21 | 300 | 18 | 314 | 2.56e-120 | 348 |
| MS.gene90188.t1 | AT1G35140 | 57.401 | 277 | 106 | 4 | 35 | 299 | 32 | 308 | 3.73e-110 | 322 |
| MS.gene90188.t1 | AT5G51550 | 38.129 | 278 | 154 | 6 | 35 | 296 | 55 | 330 | 3.98e-49 | 166 |
| MS.gene90188.t1 | AT3G02970 | 33.110 | 299 | 158 | 7 | 41 | 298 | 33 | 330 | 1.25e-47 | 162 |
| MS.gene90188.t1 | AT2G35150 | 37.943 | 282 | 154 | 9 | 35 | 296 | 36 | 316 | 8.62e-42 | 147 |
| MS.gene90188.t1 | AT2G17230 | 36.071 | 280 | 159 | 8 | 35 | 296 | 79 | 356 | 1.29e-41 | 147 |
Find 99 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGAGAACTCCTTATATT+TGG | 0.165217 | 4.2:+19445498 | MS.gene90188:CDS |
| GCGGGTCGGGTTCTTGTTGA+TGG | 0.264006 | 4.2:+19445782 | MS.gene90188:CDS |
| GATAAACTTGGCTACACTTT+TGG | 0.278278 | 4.2:+19445643 | MS.gene90188:CDS |
| GTTTACGAAATCAACGATTA+TGG | 0.306298 | 4.2:-19445192 | None:intergenic |
| CATAACGGCCAGCTTCTTAA+AGG | 0.308448 | 4.2:+19445116 | MS.gene90188:CDS |
| ACACTTGGAAAGAATCTAAA+AGG | 0.309873 | 4.2:+19445335 | MS.gene90188:CDS |
| CTTTAAGAAGCTGGCCGTTA+TGG | 0.326946 | 4.2:-19445115 | None:intergenic |
| TTCTATAACTGTTGTGCTTA+CGG | 0.335569 | 4.2:+19445400 | MS.gene90188:CDS |
| TATAATGCCCACGGTGCTAA+TGG | 0.341608 | 4.2:+19445821 | MS.gene90188:CDS |
| GTTTGGAAGTGGAGCTTATC+CGG | 0.353040 | 4.2:+19445754 | MS.gene90188:CDS |
| CGATTATGGAGCGTTGGATT+GGG | 0.353404 | 4.2:-19445178 | None:intergenic |
| GGTGTCTGTGGTCCGTAAAT+AGG | 0.356716 | 4.2:-19445575 | None:intergenic |
| GCCTCAAGCGGCGCCGCCGC+TGG | 0.361969 | 4.2:-19445710 | None:intergenic |
| AGCGAGAACTCCTTATATTT+GGG | 0.363800 | 4.2:+19445499 | MS.gene90188:CDS |
| GCGTTTCCAACCCAAATATA+AGG | 0.364348 | 4.2:-19445509 | None:intergenic |
| TGAAAATACCCGTTGTTAAA+CGG | 0.374082 | 4.2:-19445683 | None:intergenic |
| AAAAGGCCACGCGCATTGTC+CGG | 0.384613 | 4.2:-19445546 | None:intergenic |
| GTTCTACCTACACTCTCCTT+TGG | 0.384919 | 4.2:+19445056 | MS.gene90188:CDS |
| AGCTCACCGTTAATCTAATC+TGG | 0.389734 | 4.2:+19445141 | MS.gene90188:CDS |
| TCCGTACCAGATTAGATTAA+CGG | 0.397594 | 4.2:-19445147 | None:intergenic |
| ACGATTATGGAGCGTTGGAT+TGG | 0.409756 | 4.2:-19445179 | None:intergenic |
| GCATGCAAGACTCTCGTCTA+AGG | 0.415325 | 4.2:+19445887 | MS.gene90188:CDS |
| CTACACCCTGCTTATACACT+TGG | 0.419437 | 4.2:+19445320 | MS.gene90188:CDS |
| AACGGTGACGTTGGTGTTGA+CGG | 0.420282 | 4.2:+19445614 | MS.gene90188:CDS |
| CTTATCCGGGTTACGCGGGT+CGG | 0.429586 | 4.2:+19445768 | MS.gene90188:CDS |
| TTACCAATCCGTTTAACAAC+GGG | 0.432013 | 4.2:+19445675 | MS.gene90188:CDS |
| CGGGTCGGGTTCTTGTTGAT+GGG | 0.443912 | 4.2:+19445783 | MS.gene90188:CDS |
| TGAGCTTTCCTTTAAGAAGC+TGG | 0.450946 | 4.2:-19445124 | None:intergenic |
| TTCTTTCCAAGTGTATAAGC+AGG | 0.455827 | 4.2:-19445326 | None:intergenic |
| GCGAAAGATGTTAACGTTGA+AGG | 0.459961 | 4.2:+19445422 | MS.gene90188:CDS |
| ACGGCGTGTACTGGTGTGTT+TGG | 0.462929 | 4.2:+19445737 | MS.gene90188:CDS |
| GGTCCCACATCGCCGGCAAA+AGG | 0.475314 | 4.2:-19445853 | None:intergenic |
| GAGGCTGTAACGGCGTGTAC+TGG | 0.482633 | 4.2:+19445728 | MS.gene90188:CDS |
| AGAACTCCTTATATTTGGGT+TGG | 0.485130 | 4.2:+19445503 | MS.gene90188:CDS |
| ACCAGCGGCGGCGCCGCTTG+AGG | 0.487470 | 4.2:+19445709 | MS.gene90188:CDS |
| GGCGCCGCTTGAGGCTGTAA+CGG | 0.487572 | 4.2:+19445718 | MS.gene90188:CDS |
| GATGTGGGACCCTCAAACTT+CGG | 0.490246 | 4.2:+19445865 | MS.gene90188:CDS |
| ATAATGCCCACGGTGCTAAT+GGG | 0.490999 | 4.2:+19445822 | MS.gene90188:CDS |
| AACGCTGAGACGCTCTGTCC+CGG | 0.491547 | 4.2:+19445527 | MS.gene90188:CDS |
| GATGGCAAAGTTGTAATTAG+AGG | 0.491892 | 4.2:-19445009 | None:intergenic |
| CACGCGGAGGCTGATGGAAG+AGG | 0.494301 | 4.2:-19445236 | None:intergenic |
| TTCCATCAGCCTCCGCGTGG+TGG | 0.494962 | 4.2:+19445240 | MS.gene90188:CDS |
| TCTTGCATGCCGAAGTTTGA+GGG | 0.503332 | 4.2:-19445874 | None:intergenic |
| TTATCCGGGTTACGCGGGTC+GGG | 0.503941 | 4.2:+19445769 | MS.gene90188:CDS |
| GTCTTGCATGCCGAAGTTTG+AGG | 0.507065 | 4.2:-19445875 | None:intergenic |
| AAAGGCCACGCGCATTGTCC+GGG | 0.507372 | 4.2:-19445545 | None:intergenic |
| ATACCCGTTGTTAAACGGAT+TGG | 0.507789 | 4.2:-19445678 | None:intergenic |
| CCGTAAATAGGTTGATGAAA+AGG | 0.512799 | 4.2:-19445563 | None:intergenic |
| GGTTCTGTCCGACGTGGCAA+CGG | 0.513391 | 4.2:+19445473 | MS.gene90188:CDS |
| TGTACTGGTGTGTTTGGAAG+TGG | 0.514432 | 4.2:+19445743 | MS.gene90188:CDS |
| TTTGGAAGTGGAGCTTATCC+GGG | 0.516439 | 4.2:+19445755 | MS.gene90188:CDS |
| ACGGTGACGTTGGTGTTGAC+GGG | 0.523374 | 4.2:+19445615 | MS.gene90188:CDS |
| TCAACACCAACGTCACCGTT+AGG | 0.525171 | 4.2:-19445611 | None:intergenic |
| GGCTGATGGAAGAGGCGCAC+CGG | 0.531178 | 4.2:-19445228 | None:intergenic |
| TTCCACCACGCGGAGGCTGA+TGG | 0.535382 | 4.2:-19445242 | None:intergenic |
| GGATCCTCTGCTCTTATCGT+AGG | 0.545765 | 4.2:+19445287 | MS.gene90188:CDS |
| GTTTGAGGGTCCCACATCGC+CGG | 0.553736 | 4.2:-19445860 | None:intergenic |
| CTTCCTCCCATTAGCACCGT+GGG | 0.556886 | 4.2:-19445828 | None:intergenic |
| GTTCTTGTTGATGGGGCAAG+TGG | 0.557525 | 4.2:+19445791 | MS.gene90188:CDS |
| AGAACCCGACCCGCGTAACC+CGG | 0.558075 | 4.2:-19445773 | None:intergenic |
| TGGAGCTTATCCGGGTTACG+CGG | 0.558690 | 4.2:+19445763 | MS.gene90188:CDS |
| TTCTTGTACAAGCTCTCCAA+AGG | 0.559281 | 4.2:-19445072 | None:intergenic |
| ACCGTTAATCTAATCTGGTA+CGG | 0.560213 | 4.2:+19445146 | MS.gene90188:CDS |
| AATCAACGATTATGGAGCGT+TGG | 0.567660 | 4.2:-19445184 | None:intergenic |
| GATTCTGTATGAGTCGTTGT+GGG | 0.570975 | 4.2:+19445444 | MS.gene90188:CDS |
| TCTGTCCGACGTGGCAACGG+TGG | 0.574227 | 4.2:+19445476 | MS.gene90188:CDS |
| GATTATGGAGCGTTGGATTG+GGG | 0.576658 | 4.2:-19445177 | None:intergenic |
| CAAGTGTATAAGCAGGGTGT+AGG | 0.581110 | 4.2:-19445319 | None:intergenic |
| GCCACGTCGGACAGAACCAT+GGG | 0.589685 | 4.2:-19445468 | None:intergenic |
| TGATGGAAGAGGCGCACCGG+TGG | 0.590504 | 4.2:-19445225 | None:intergenic |
| GCAACTAACGGCGGTGTCTG+TGG | 0.596309 | 4.2:-19445587 | None:intergenic |
| CACGCCGTTACAGCCTCAAG+CGG | 0.597309 | 4.2:-19445722 | None:intergenic |
| GGGTCGGGTTCTTGTTGATG+GGG | 0.600065 | 4.2:+19445784 | MS.gene90188:CDS |
| GTTACCAATCCGTTTAACAA+CGG | 0.603751 | 4.2:+19445674 | MS.gene90188:CDS |
| GATCCTCTGCTCTTATCGTA+GGG | 0.608173 | 4.2:+19445288 | MS.gene90188:CDS |
| TGACGGGATGGTGATAAACT+TGG | 0.608872 | 4.2:+19445631 | MS.gene90188:CDS |
| TGCCACGTCGGACAGAACCA+TGG | 0.609787 | 4.2:-19445469 | None:intergenic |
| TGACGTTGGTGTTGACGGGA+TGG | 0.610885 | 4.2:+19445619 | MS.gene90188:CDS |
| TCTTTCCAAGTGTATAAGCA+GGG | 0.611108 | 4.2:-19445325 | None:intergenic |
| CTTGTACTCAAGTACCATAA+CGG | 0.616114 | 4.2:+19445101 | MS.gene90188:CDS |
| TTATGGTACTTGAGTACAAG+TGG | 0.616668 | 4.2:-19445098 | None:intergenic |
| GGAGCTTATCCGGGTTACGC+GGG | 0.618271 | 4.2:+19445764 | MS.gene90188:CDS |
| GGATTCTGTATGAGTCGTTG+TGG | 0.618437 | 4.2:+19445443 | MS.gene90188:CDS |
| GTAAACTCTCTCAGCACCAC+CGG | 0.619787 | 4.2:+19445209 | MS.gene90188:CDS |
| ATGAGTCGTTGTGGGACCCA+TGG | 0.620367 | 4.2:+19445452 | MS.gene90188:CDS |
| TCTGTCCCGGACAATGCGCG+TGG | 0.629534 | 4.2:+19445540 | MS.gene90188:CDS |
| ATGCCCACGGTGCTAATGGG+AGG | 0.630632 | 4.2:+19445825 | MS.gene90188:CDS |
| GTTGCTCCTAACGGTGACGT+TGG | 0.634818 | 4.2:+19445605 | MS.gene90188:CDS |
| CCGCCGTTAGTTGCTCCTAA+CGG | 0.640396 | 4.2:+19445596 | MS.gene90188:CDS |
| GGATCTAGCTATAATGCCCA+CGG | 0.645458 | 4.2:+19445812 | MS.gene90188:CDS |
| ACCCATGGTTCTGTCCGACG+TGG | 0.645695 | 4.2:+19445467 | MS.gene90188:CDS |
| TCGCTCCACCGTTGCCACGT+CGG | 0.658907 | 4.2:-19445481 | None:intergenic |
| CTCTTCCATCAGCCTCCGCG+TGG | 0.664341 | 4.2:+19445237 | MS.gene90188:CDS |
| TCACCGTTAGGAGCAACTAA+CGG | 0.675396 | 4.2:-19445599 | None:intergenic |
| AGCTCTCCAAAGGAGAGTGT+AGG | 0.679417 | 4.2:-19445062 | None:intergenic |
| TTTCCCTACGATAAGAGCAG+AGG | 0.696161 | 4.2:-19445291 | None:intergenic |
| ACTTCCTCCCATTAGCACCG+TGG | 0.699326 | 4.2:-19445829 | None:intergenic |
| CAACACTGCAGAGAGAACGA+TGG | 0.723685 | 4.2:-19445027 | None:intergenic |
| CCGTTAGGAGCAACTAACGG+CGG | 0.783376 | 4.2:-19445596 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAAACTACTGAAAAATACA+AGG | + | chr4.2:19445262-19445281 | MS.gene90188:CDS | 25.0% |
| ACACTTGGAAAGAATCTAAA+AGG | + | chr4.2:19445335-19445354 | MS.gene90188:CDS | 30.0% | |
| ACTACTGAAAAATACAAGGT+AGG | + | chr4.2:19445266-19445285 | MS.gene90188:CDS | 30.0% | |
| GTTTACGAAATCAACGATTA+TGG | - | chr4.2:19445195-19445214 | None:intergenic | 30.0% | |
| TGAAAATACCCGTTGTTAAA+CGG | - | chr4.2:19445686-19445705 | None:intergenic | 30.0% | |
| TTCTATAACTGTTGTGCTTA+CGG | + | chr4.2:19445400-19445419 | MS.gene90188:CDS | 30.0% | |
| ! | CCTTTTCATCAACCTATTTA+CGG | + | chr4.2:19445563-19445582 | MS.gene90188:CDS | 30.0% |
| ! | TTTAACAACGGGTATTTTCA+GGG | + | chr4.2:19445686-19445705 | MS.gene90188:CDS | 30.0% |
| ACCGTTAATCTAATCTGGTA+CGG | + | chr4.2:19445146-19445165 | MS.gene90188:CDS | 35.0% | |
| AGAACTCCTTATATTTGGGT+TGG | + | chr4.2:19445503-19445522 | MS.gene90188:CDS | 35.0% | |
| AGCGAGAACTCCTTATATTT+GGG | + | chr4.2:19445499-19445518 | MS.gene90188:CDS | 35.0% | |
| CTTGTACTCAAGTACCATAA+CGG | + | chr4.2:19445101-19445120 | MS.gene90188:CDS | 35.0% | |
| GATGGCAAAGTTGTAATTAG+AGG | - | chr4.2:19445012-19445031 | None:intergenic | 35.0% | |
| GTTACCAATCCGTTTAACAA+CGG | + | chr4.2:19445674-19445693 | MS.gene90188:CDS | 35.0% | |
| TCCGTACCAGATTAGATTAA+CGG | - | chr4.2:19445150-19445169 | None:intergenic | 35.0% | |
| TCTTTCCAAGTGTATAAGCA+GGG | - | chr4.2:19445328-19445347 | None:intergenic | 35.0% | |
| TTACCAATCCGTTTAACAAC+GGG | + | chr4.2:19445675-19445694 | MS.gene90188:CDS | 35.0% | |
| TTATGGTACTTGAGTACAAG+TGG | - | chr4.2:19445101-19445120 | None:intergenic | 35.0% | |
| TTCTTTCCAAGTGTATAAGC+AGG | - | chr4.2:19445329-19445348 | None:intergenic | 35.0% | |
| ! | GATAAACTTGGCTACACTTT+TGG | + | chr4.2:19445643-19445662 | MS.gene90188:CDS | 35.0% |
| ! | GTTTAACAACGGGTATTTTC+AGG | + | chr4.2:19445685-19445704 | MS.gene90188:CDS | 35.0% |
| !! | CCGTAAATAGGTTGATGAAA+AGG | - | chr4.2:19445566-19445585 | None:intergenic | 35.0% |
| AATCAACGATTATGGAGCGT+TGG | - | chr4.2:19445187-19445206 | None:intergenic | 40.0% | |
| AGCTCACCGTTAATCTAATC+TGG | + | chr4.2:19445141-19445160 | MS.gene90188:CDS | 40.0% | |
| ATACCCGTTGTTAAACGGAT+TGG | - | chr4.2:19445681-19445700 | None:intergenic | 40.0% | |
| GAGCGAGAACTCCTTATATT+TGG | + | chr4.2:19445498-19445517 | MS.gene90188:CDS | 40.0% | |
| GATTCTGTATGAGTCGTTGT+GGG | + | chr4.2:19445444-19445463 | MS.gene90188:CDS | 40.0% | |
| GCGAAAGATGTTAACGTTGA+AGG | + | chr4.2:19445422-19445441 | MS.gene90188:CDS | 40.0% | |
| GCGTTTCCAACCCAAATATA+AGG | - | chr4.2:19445512-19445531 | None:intergenic | 40.0% | |
| TTCTTGTACAAGCTCTCCAA+AGG | - | chr4.2:19445075-19445094 | None:intergenic | 40.0% | |
| ! | TGAGCTTTCCTTTAAGAAGC+TGG | - | chr4.2:19445127-19445146 | None:intergenic | 40.0% |
| CAAGTGTATAAGCAGGGTGT+AGG | - | chr4.2:19445322-19445341 | None:intergenic | 45.0% | |
| CATAACGGCCAGCTTCTTAA+AGG | + | chr4.2:19445116-19445135 | MS.gene90188:CDS | 45.0% | |
| CTACACCCTGCTTATACACT+TGG | + | chr4.2:19445320-19445339 | MS.gene90188:CDS | 45.0% | |
| GATCCTCTGCTCTTATCGTA+GGG | + | chr4.2:19445288-19445307 | MS.gene90188:CDS | 45.0% | |
| GGATCTAGCTATAATGCCCA+CGG | + | chr4.2:19445812-19445831 | MS.gene90188:CDS | 45.0% | |
| GGATTCTGTATGAGTCGTTG+TGG | + | chr4.2:19445443-19445462 | MS.gene90188:CDS | 45.0% | |
| GTTCTACCTACACTCTCCTT+TGG | + | chr4.2:19445056-19445075 | MS.gene90188:CDS | 45.0% | |
| GTTTGGAAGTGGAGCTTATC+CGG | + | chr4.2:19445754-19445773 | MS.gene90188:CDS | 45.0% | |
| TCACCGTTAGGAGCAACTAA+CGG | - | chr4.2:19445602-19445621 | None:intergenic | 45.0% | |
| TCTTGCATGCCGAAGTTTGA+GGG | - | chr4.2:19445877-19445896 | None:intergenic | 45.0% | |
| TGACGGGATGGTGATAAACT+TGG | + | chr4.2:19445631-19445650 | MS.gene90188:CDS | 45.0% | |
| TTTCCCTACGATAAGAGCAG+AGG | - | chr4.2:19445294-19445313 | None:intergenic | 45.0% | |
| TTTGGAAGTGGAGCTTATCC+GGG | + | chr4.2:19445755-19445774 | MS.gene90188:CDS | 45.0% | |
| ! | AACTTGGCTACACTTTTGGC+TGG | + | chr4.2:19445647-19445666 | MS.gene90188:CDS | 45.0% |
| ! | ATAATGCCCACGGTGCTAAT+GGG | + | chr4.2:19445822-19445841 | MS.gene90188:CDS | 45.0% |
| ! | CTTTAAGAAGCTGGCCGTTA+TGG | - | chr4.2:19445118-19445137 | None:intergenic | 45.0% |
| ! | TATAATGCCCACGGTGCTAA+TGG | + | chr4.2:19445821-19445840 | MS.gene90188:CDS | 45.0% |
| ! | TGTACTGGTGTGTTTGGAAG+TGG | + | chr4.2:19445743-19445762 | MS.gene90188:CDS | 45.0% |
| ! | TTCAGTAGTTTTCCACCACG+CGG | - | chr4.2:19445255-19445274 | None:intergenic | 45.0% |
| !! | ACGATTATGGAGCGTTGGAT+TGG | - | chr4.2:19445182-19445201 | None:intergenic | 45.0% |
| !! | CGATTATGGAGCGTTGGATT+GGG | - | chr4.2:19445181-19445200 | None:intergenic | 45.0% |
| !! | GATTATGGAGCGTTGGATTG+GGG | - | chr4.2:19445180-19445199 | None:intergenic | 45.0% |
| CAACACTGCAGAGAGAACGA+TGG | - | chr4.2:19445030-19445049 | None:intergenic | 50.0% | |
| GATGTGGGACCCTCAAACTT+CGG | + | chr4.2:19445865-19445884 | MS.gene90188:CDS | 50.0% | |
| GGATCCTCTGCTCTTATCGT+AGG | + | chr4.2:19445287-19445306 | MS.gene90188:CDS | 50.0% | |
| GGTGTCTGTGGTCCGTAAAT+AGG | - | chr4.2:19445578-19445597 | None:intergenic | 50.0% | |
| GTAAACTCTCTCAGCACCAC+CGG | + | chr4.2:19445209-19445228 | MS.gene90188:CDS | 50.0% | |
| GTCTTGCATGCCGAAGTTTG+AGG | - | chr4.2:19445878-19445897 | None:intergenic | 50.0% | |
| TCAACACCAACGTCACCGTT+AGG | - | chr4.2:19445614-19445633 | None:intergenic | 50.0% | |
| ! | AGCTCTCCAAAGGAGAGTGT+AGG | - | chr4.2:19445065-19445084 | None:intergenic | 50.0% |
| ! | GTTCTTGTTGATGGGGCAAG+TGG | + | chr4.2:19445791-19445810 | MS.gene90188:CDS | 50.0% |
| !! | AACGGTGACGTTGGTGTTGA+CGG | + | chr4.2:19445614-19445633 | MS.gene90188:CDS | 50.0% |
| !!! | TGGGAGGAAGTACCTTTTGC+CGG | + | chr4.2:19445841-19445860 | MS.gene90188:CDS | 50.0% |
| AAAAGGCCACGCGCATTGTC+CGG | - | chr4.2:19445549-19445568 | None:intergenic | 55.0% | |
| ACTTCCTCCCATTAGCACCG+TGG | - | chr4.2:19445832-19445851 | None:intergenic | 55.0% | |
| ATGAGTCGTTGTGGGACCCA+TGG | + | chr4.2:19445452-19445471 | MS.gene90188:CDS | 55.0% | |
| CCGCCGTTAGTTGCTCCTAA+CGG | + | chr4.2:19445596-19445615 | MS.gene90188:CDS | 55.0% | |
| CCGTTAGGAGCAACTAACGG+CGG | - | chr4.2:19445599-19445618 | None:intergenic | 55.0% | |
| CGGGTCGGGTTCTTGTTGAT+GGG | + | chr4.2:19445783-19445802 | MS.gene90188:CDS | 55.0% | |
| CTTCCTCCCATTAGCACCGT+GGG | - | chr4.2:19445831-19445850 | None:intergenic | 55.0% | |
| GGGTCGGGTTCTTGTTGATG+GGG | + | chr4.2:19445784-19445803 | MS.gene90188:CDS | 55.0% | |
| GTTGCTCCTAACGGTGACGT+TGG | + | chr4.2:19445605-19445624 | MS.gene90188:CDS | 55.0% | |
| TGGAGCTTATCCGGGTTACG+CGG | + | chr4.2:19445763-19445782 | MS.gene90188:CDS | 55.0% | |
| ! | ACGGCGTGTACTGGTGTGTT+TGG | + | chr4.2:19445737-19445756 | MS.gene90188:CDS | 55.0% |
| ! | AGTACCTTTTGCCGGCGATG+TGG | + | chr4.2:19445849-19445868 | MS.gene90188:CDS | 55.0% |
| ! | AGTAGTTTTCCACCACGCGG+AGG | - | chr4.2:19445252-19445271 | None:intergenic | 55.0% |
| ! | GTACCTTTTGCCGGCGATGT+GGG | + | chr4.2:19445850-19445869 | MS.gene90188:CDS | 55.0% |
| !! | ACGGTGACGTTGGTGTTGAC+GGG | + | chr4.2:19445615-19445634 | MS.gene90188:CDS | 55.0% |
| !! | CGGGTATTTTCAGGGACCAG+CGG | + | chr4.2:19445694-19445713 | MS.gene90188:CDS | 55.0% |
| !! | GTATTTTCAGGGACCAGCGG+CGG | + | chr4.2:19445697-19445716 | MS.gene90188:CDS | 55.0% |
| !! | TGACGTTGGTGTTGACGGGA+TGG | + | chr4.2:19445619-19445638 | MS.gene90188:CDS | 55.0% |
| AAAGGCCACGCGCATTGTCC+GGG | - | chr4.2:19445548-19445567 | None:intergenic | 60.0% | |
| AACGCTGAGACGCTCTGTCC+CGG | + | chr4.2:19445527-19445546 | MS.gene90188:CDS | 60.0% | |
| CACGCCGTTACAGCCTCAAG+CGG | - | chr4.2:19445725-19445744 | None:intergenic | 60.0% | |
| CTTATCCGGGTTACGCGGGT+CGG | + | chr4.2:19445768-19445787 | MS.gene90188:CDS | 60.0% | |
| GAGGCTGTAACGGCGTGTAC+TGG | + | chr4.2:19445728-19445747 | MS.gene90188:CDS | 60.0% | |
| GCAACTAACGGCGGTGTCTG+TGG | - | chr4.2:19445590-19445609 | None:intergenic | 60.0% | |
| GCCACGTCGGACAGAACCAT+GGG | - | chr4.2:19445471-19445490 | None:intergenic | 60.0% | |
| GCGGGTCGGGTTCTTGTTGA+TGG | + | chr4.2:19445782-19445801 | MS.gene90188:CDS | 60.0% | |
| GGAGCTTATCCGGGTTACGC+GGG | + | chr4.2:19445764-19445783 | MS.gene90188:CDS | 60.0% | |
| GGTTCTGTCCGACGTGGCAA+CGG | + | chr4.2:19445473-19445492 | MS.gene90188:CDS | 60.0% | |
| GTTTGAGGGTCCCACATCGC+CGG | - | chr4.2:19445863-19445882 | None:intergenic | 60.0% | |
| TGCCACGTCGGACAGAACCA+TGG | - | chr4.2:19445472-19445491 | None:intergenic | 60.0% | |
| TTATCCGGGTTACGCGGGTC+GGG | + | chr4.2:19445769-19445788 | MS.gene90188:CDS | 60.0% | |
| ! | ACCCATGGTTCTGTCCGACG+TGG | + | chr4.2:19445467-19445486 | MS.gene90188:CDS | 60.0% |
| ! | ATGCCCACGGTGCTAATGGG+AGG | + | chr4.2:19445825-19445844 | MS.gene90188:CDS | 60.0% |
| AGAACCCGACCCGCGTAACC+CGG | - | chr4.2:19445776-19445795 | None:intergenic | 65.0% | |
| CACGCGGAGGCTGATGGAAG+AGG | - | chr4.2:19445239-19445258 | None:intergenic | 65.0% | |
| CTCTTCCATCAGCCTCCGCG+TGG | + | chr4.2:19445237-19445256 | MS.gene90188:CDS | 65.0% | |
| GGCGCCGCTTGAGGCTGTAA+CGG | + | chr4.2:19445718-19445737 | MS.gene90188:CDS | 65.0% | |
| GGTCCCACATCGCCGGCAAA+AGG | - | chr4.2:19445856-19445875 | None:intergenic | 65.0% | |
| TCGCTCCACCGTTGCCACGT+CGG | - | chr4.2:19445484-19445503 | None:intergenic | 65.0% | |
| TCTGTCCCGGACAATGCGCG+TGG | + | chr4.2:19445540-19445559 | MS.gene90188:CDS | 65.0% | |
| TCTGTCCGACGTGGCAACGG+TGG | + | chr4.2:19445476-19445495 | MS.gene90188:CDS | 65.0% | |
| TTCCACCACGCGGAGGCTGA+TGG | - | chr4.2:19445245-19445264 | None:intergenic | 65.0% | |
| TTCCATCAGCCTCCGCGTGG+TGG | + | chr4.2:19445240-19445259 | MS.gene90188:CDS | 65.0% | |
| ! | GGCTGATGGAAGAGGCGCAC+CGG | - | chr4.2:19445231-19445250 | None:intergenic | 65.0% |
| ! | TGATGGAAGAGGCGCACCGG+TGG | - | chr4.2:19445228-19445247 | None:intergenic | 65.0% |
| ! | ACCAGCGGCGGCGCCGCTTG+AGG | + | chr4.2:19445709-19445728 | MS.gene90188:CDS | 80.0% |
| ! | GCCTCAAGCGGCGCCGCCGC+TGG | - | chr4.2:19445713-19445732 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19445005 | 19445907 | 19445005 | ID=MS.gene90188 |
| chr4.2 | mRNA | 19445005 | 19445907 | 19445005 | ID=MS.gene90188.t1;Parent=MS.gene90188 |
| chr4.2 | exon | 19445005 | 19445907 | 19445005 | ID=MS.gene90188.t1.exon1;Parent=MS.gene90188.t1 |
| chr4.2 | CDS | 19445005 | 19445907 | 19445005 | ID=cds.MS.gene90188.t1;Parent=MS.gene90188.t1 |
| Gene Sequence |
| Protein sequence |
