Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053547.t1 | XP_003608450.1 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 2.50E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053547.t1 | Q9FE06 | 70.6 | 310 | 76 | 5 | 1 | 300 | 1 | 305 | 1.1e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053547.t1 | G7JCS2 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 1.8e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053547 | MS.gene074408 | 0.810746 | 9.89E-51 | -1.69E-46 |
| MS.gene053547 | MS.gene35011 | 0.982135 | 2.56E-154 | -1.69E-46 |
| MS.gene053547 | MS.gene71797 | 0.820725 | 5.89E-53 | -1.69E-46 |
| MS.gene053547 | MS.gene73400 | 0.811216 | 7.82E-51 | -1.69E-46 |
| MS.gene053547 | MS.gene90188 | 0.962291 | 1.06E-120 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053547.t1 | MTR_4g094240 | 98.333 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 0.0 | 602 |
| MS.gene053547.t1 | MTR_2g009070 | 67.213 | 305 | 94 | 5 | 1 | 300 | 1 | 304 | 1.02e-152 | 429 |
| MS.gene053547.t1 | MTR_5g464340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene053547.t1 | MTR_5g064340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene053547.t1 | MTR_5g064345 | 58.544 | 316 | 114 | 6 | 1 | 300 | 1 | 315 | 4.19e-123 | 355 |
| MS.gene053547.t1 | MTR_3g074830 | 58.934 | 319 | 110 | 5 | 1 | 300 | 29 | 345 | 4.34e-123 | 356 |
| MS.gene053547.t1 | MTR_5g064360 | 58.900 | 309 | 110 | 6 | 7 | 300 | 10 | 316 | 5.35e-122 | 352 |
| MS.gene053547.t1 | MTR_3g074860 | 59.783 | 276 | 102 | 3 | 30 | 300 | 33 | 304 | 3.95e-119 | 344 |
| MS.gene053547.t1 | MTR_3g074890 | 59.420 | 276 | 103 | 4 | 30 | 300 | 33 | 304 | 5.74e-118 | 341 |
| MS.gene053547.t1 | MTR_4g033790 | 37.050 | 278 | 157 | 7 | 35 | 296 | 65 | 340 | 7.93e-46 | 158 |
| MS.gene053547.t1 | MTR_1g076470 | 37.500 | 280 | 154 | 7 | 35 | 296 | 64 | 340 | 4.04e-44 | 154 |
| MS.gene053547.t1 | MTR_8g071310 | 57.500 | 80 | 28 | 2 | 227 | 300 | 6 | 85 | 1.28e-23 | 92.4 |
| MS.gene053547.t1 | MTR_8g088900 | 52.222 | 90 | 43 | 0 | 211 | 300 | 283 | 372 | 3.16e-21 | 92.8 |
| MS.gene053547.t1 | MTR_4g013230 | 62.121 | 66 | 22 | 1 | 235 | 300 | 78 | 140 | 4.28e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053547.t1 | AT5G64260 | 70.874 | 309 | 77 | 5 | 1 | 300 | 1 | 305 | 4.28e-154 | 433 |
| MS.gene053547.t1 | AT5G09440 | 62.829 | 304 | 83 | 8 | 1 | 300 | 1 | 278 | 1.87e-124 | 357 |
| MS.gene053547.t1 | AT4G08950 | 58.249 | 297 | 107 | 5 | 21 | 300 | 18 | 314 | 2.56e-120 | 348 |
| MS.gene053547.t1 | AT1G35140 | 57.401 | 277 | 106 | 4 | 35 | 299 | 32 | 308 | 3.73e-110 | 322 |
| MS.gene053547.t1 | AT5G51550 | 38.129 | 278 | 154 | 6 | 35 | 296 | 55 | 330 | 3.98e-49 | 166 |
| MS.gene053547.t1 | AT3G02970 | 33.110 | 299 | 158 | 7 | 41 | 298 | 33 | 330 | 1.25e-47 | 162 |
| MS.gene053547.t1 | AT2G35150 | 37.943 | 282 | 154 | 9 | 35 | 296 | 36 | 316 | 8.62e-42 | 147 |
| MS.gene053547.t1 | AT2G17230 | 36.071 | 280 | 159 | 8 | 35 | 296 | 79 | 356 | 1.29e-41 | 147 |
Find 98 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGAGAACTCCTTATATT+TGG | 0.165217 | 4.3:+20429928 | MS.gene053547:CDS |
| GCGGGTCGGGTTCTTGTTGA+TGG | 0.264006 | 4.3:+20430212 | MS.gene053547:CDS |
| GATAAACTTGGCTACACTTT+TGG | 0.278278 | 4.3:+20430073 | MS.gene053547:CDS |
| GTTTACGAAATCAACGATTA+TGG | 0.306298 | 4.3:-20429622 | None:intergenic |
| CATAACGGCCAGCTTCTTAA+AGG | 0.308448 | 4.3:+20429546 | MS.gene053547:CDS |
| ACACTTGGAAAGAATCTAAA+AGG | 0.309873 | 4.3:+20429765 | MS.gene053547:CDS |
| CTTTAAGAAGCTGGCCGTTA+TGG | 0.326946 | 4.3:-20429545 | None:intergenic |
| TTCTATAACTGTTGTGCTTA+CGG | 0.335569 | 4.3:+20429830 | MS.gene053547:CDS |
| TATAATGCCCACGGTGCTAA+TGG | 0.341608 | 4.3:+20430251 | MS.gene053547:CDS |
| GTTTGGAAGTGGAGCTTATC+CGG | 0.353040 | 4.3:+20430184 | MS.gene053547:CDS |
| CGATTATGGAGCGTTGGATT+GGG | 0.353404 | 4.3:-20429608 | None:intergenic |
| GGTGTCTGTGGTCCGTAAAT+AGG | 0.356716 | 4.3:-20430005 | None:intergenic |
| GCCTCAAGCGGCGCCGCCGC+TGG | 0.361969 | 4.3:-20430140 | None:intergenic |
| AGCGAGAACTCCTTATATTT+GGG | 0.363800 | 4.3:+20429929 | MS.gene053547:CDS |
| GCGTTTCCAACCCAAATATA+AGG | 0.364348 | 4.3:-20429939 | None:intergenic |
| TGAAAATACCCGTTGTTAAA+CGG | 0.374082 | 4.3:-20430113 | None:intergenic |
| AAAAGGCCACGCGCATTGTC+CGG | 0.384613 | 4.3:-20429976 | None:intergenic |
| GTTCTACCTACACTCTCCTT+TGG | 0.384919 | 4.3:+20429486 | MS.gene053547:CDS |
| AGCTCACCGTTAATCTAATC+TGG | 0.389734 | 4.3:+20429571 | MS.gene053547:CDS |
| TCCGTACCAGATTAGATTAA+CGG | 0.397594 | 4.3:-20429577 | None:intergenic |
| ACGATTATGGAGCGTTGGAT+TGG | 0.409756 | 4.3:-20429609 | None:intergenic |
| GCATGCAAGACTCTCGTCTA+AGG | 0.415325 | 4.3:+20430317 | MS.gene053547:CDS |
| CTACACCCTGCTTATACACT+TGG | 0.419437 | 4.3:+20429750 | MS.gene053547:CDS |
| AACGGTGACGTTGGTGTTGA+CGG | 0.420282 | 4.3:+20430044 | MS.gene053547:CDS |
| CTTATCCGGGTTACGCGGGT+CGG | 0.429586 | 4.3:+20430198 | MS.gene053547:CDS |
| TTACGAATCCGTTTAACAAC+GGG | 0.434370 | 4.3:+20430105 | MS.gene053547:CDS |
| CGGGTCGGGTTCTTGTTGAT+GGG | 0.443912 | 4.3:+20430213 | MS.gene053547:CDS |
| TGAGCTTTCCTTTAAGAAGC+TGG | 0.450946 | 4.3:-20429554 | None:intergenic |
| TTCTTTCCAAGTGTATAAGC+AGG | 0.455827 | 4.3:-20429756 | None:intergenic |
| GCGAAAGATGTTAACGTTGA+AGG | 0.459961 | 4.3:+20429852 | MS.gene053547:CDS |
| ACGGCGTGTACTGGTGTGTT+TGG | 0.462929 | 4.3:+20430167 | MS.gene053547:CDS |
| GGTCCCACATCGCCGGCAAA+AGG | 0.475314 | 4.3:-20430283 | None:intergenic |
| GAGGCTGTAACGGCGTGTAC+TGG | 0.482633 | 4.3:+20430158 | MS.gene053547:CDS |
| AGAACTCCTTATATTTGGGT+TGG | 0.485130 | 4.3:+20429933 | MS.gene053547:CDS |
| ACCAGCGGCGGCGCCGCTTG+AGG | 0.487470 | 4.3:+20430139 | MS.gene053547:CDS |
| GGCGCCGCTTGAGGCTGTAA+CGG | 0.487572 | 4.3:+20430148 | MS.gene053547:CDS |
| GATGTGGGACCCTCAAACTT+CGG | 0.490246 | 4.3:+20430295 | MS.gene053547:CDS |
| ATAATGCCCACGGTGCTAAT+GGG | 0.490999 | 4.3:+20430252 | MS.gene053547:CDS |
| AACGCTGAGACGCTCTGTCC+CGG | 0.491547 | 4.3:+20429957 | MS.gene053547:CDS |
| GATGGCAAAGTTGTAATTAG+AGG | 0.491892 | 4.3:-20429439 | None:intergenic |
| CACGCGGAGGCTGATGGAAG+AGG | 0.494301 | 4.3:-20429666 | None:intergenic |
| TTCCATCAGCCTCCGCGTGG+TGG | 0.494962 | 4.3:+20429670 | MS.gene053547:CDS |
| TCTTGCATGCCGAAGTTTGA+GGG | 0.503332 | 4.3:-20430304 | None:intergenic |
| TTATCCGGGTTACGCGGGTC+GGG | 0.503941 | 4.3:+20430199 | MS.gene053547:CDS |
| GTCTTGCATGCCGAAGTTTG+AGG | 0.507065 | 4.3:-20430305 | None:intergenic |
| AAAGGCCACGCGCATTGTCC+GGG | 0.507372 | 4.3:-20429975 | None:intergenic |
| CCGTAAATAGGTTGATGAAA+AGG | 0.512799 | 4.3:-20429993 | None:intergenic |
| GGTTCTGTCCGACGTGGCAA+CGG | 0.513391 | 4.3:+20429903 | MS.gene053547:CDS |
| TGTACTGGTGTGTTTGGAAG+TGG | 0.514432 | 4.3:+20430173 | MS.gene053547:CDS |
| TTTGGAAGTGGAGCTTATCC+GGG | 0.516439 | 4.3:+20430185 | MS.gene053547:CDS |
| ACGGTGACGTTGGTGTTGAC+GGG | 0.523374 | 4.3:+20430045 | MS.gene053547:CDS |
| TCAACACCAACGTCACCGTT+AGG | 0.525171 | 4.3:-20430041 | None:intergenic |
| GGCTGATGGAAGAGGCGCAC+CGG | 0.531178 | 4.3:-20429658 | None:intergenic |
| TTCCACCACGCGGAGGCTGA+TGG | 0.535382 | 4.3:-20429672 | None:intergenic |
| GGATCCTCTGCTCTTATCGT+AGG | 0.545765 | 4.3:+20429717 | MS.gene053547:CDS |
| GTTTGAGGGTCCCACATCGC+CGG | 0.553736 | 4.3:-20430290 | None:intergenic |
| CTTCCTCCCATTAGCACCGT+GGG | 0.556886 | 4.3:-20430258 | None:intergenic |
| GTTCTTGTTGATGGGGCAAG+TGG | 0.557525 | 4.3:+20430221 | MS.gene053547:CDS |
| AGAACCCGACCCGCGTAACC+CGG | 0.558075 | 4.3:-20430203 | None:intergenic |
| TGGAGCTTATCCGGGTTACG+CGG | 0.558690 | 4.3:+20430193 | MS.gene053547:CDS |
| TTCTTGTACAAGCTCTCCAA+AGG | 0.559281 | 4.3:-20429502 | None:intergenic |
| ACCGTTAATCTAATCTGGTA+CGG | 0.560213 | 4.3:+20429576 | MS.gene053547:CDS |
| AATCAACGATTATGGAGCGT+TGG | 0.567660 | 4.3:-20429614 | None:intergenic |
| GATTCTGTATGAGTCGTTGT+GGG | 0.570975 | 4.3:+20429874 | MS.gene053547:CDS |
| TCTGTCCGACGTGGCAACGG+TGG | 0.574227 | 4.3:+20429906 | MS.gene053547:CDS |
| GATTATGGAGCGTTGGATTG+GGG | 0.576658 | 4.3:-20429607 | None:intergenic |
| CAAGTGTATAAGCAGGGTGT+AGG | 0.581110 | 4.3:-20429749 | None:intergenic |
| GCCACGTCGGACAGAACCAT+GGG | 0.589685 | 4.3:-20429898 | None:intergenic |
| TGATGGAAGAGGCGCACCGG+TGG | 0.590504 | 4.3:-20429655 | None:intergenic |
| GCAACTAACGGCGGTGTCTG+TGG | 0.596309 | 4.3:-20430017 | None:intergenic |
| CACGCCGTTACAGCCTCAAG+CGG | 0.597309 | 4.3:-20430152 | None:intergenic |
| GGGTCGGGTTCTTGTTGATG+GGG | 0.600065 | 4.3:+20430214 | MS.gene053547:CDS |
| GATCCTCTGCTCTTATCGTA+GGG | 0.608173 | 4.3:+20429718 | MS.gene053547:CDS |
| TGACGGGATGGTGATAAACT+TGG | 0.608872 | 4.3:+20430061 | MS.gene053547:CDS |
| TGCCACGTCGGACAGAACCA+TGG | 0.609787 | 4.3:-20429899 | None:intergenic |
| TGACGTTGGTGTTGACGGGA+TGG | 0.610885 | 4.3:+20430049 | MS.gene053547:CDS |
| TCTTTCCAAGTGTATAAGCA+GGG | 0.611108 | 4.3:-20429755 | None:intergenic |
| GTTACGAATCCGTTTAACAA+CGG | 0.616094 | 4.3:+20430104 | MS.gene053547:CDS |
| CTTGTACTCAAGTACCATAA+CGG | 0.616114 | 4.3:+20429531 | MS.gene053547:CDS |
| TTATGGTACTTGAGTACAAG+TGG | 0.616668 | 4.3:-20429528 | None:intergenic |
| GGAGCTTATCCGGGTTACGC+GGG | 0.618271 | 4.3:+20430194 | MS.gene053547:CDS |
| GGATTCTGTATGAGTCGTTG+TGG | 0.618437 | 4.3:+20429873 | MS.gene053547:CDS |
| GTAAACTCTCTCAGCACCAC+CGG | 0.619787 | 4.3:+20429639 | MS.gene053547:CDS |
| ATGAGTCGTTGTGGGACCCA+TGG | 0.620367 | 4.3:+20429882 | MS.gene053547:CDS |
| TCTGTCCCGGACAATGCGCG+TGG | 0.629534 | 4.3:+20429970 | MS.gene053547:CDS |
| ATGCCCACGGTGCTAATGGG+AGG | 0.630632 | 4.3:+20430255 | MS.gene053547:CDS |
| GTTGCTCCTAACGGTGACGT+TGG | 0.634818 | 4.3:+20430035 | MS.gene053547:CDS |
| CCGCCGTTAGTTGCTCCTAA+CGG | 0.640396 | 4.3:+20430026 | MS.gene053547:CDS |
| GGATCTAGCTATAATGCCCA+CGG | 0.645458 | 4.3:+20430242 | MS.gene053547:CDS |
| ACCCATGGTTCTGTCCGACG+TGG | 0.645695 | 4.3:+20429897 | MS.gene053547:CDS |
| TCGCTCCACCGTTGCCACGT+CGG | 0.658907 | 4.3:-20429911 | None:intergenic |
| CTCTTCCATCAGCCTCCGCG+TGG | 0.664341 | 4.3:+20429667 | MS.gene053547:CDS |
| TCACCGTTAGGAGCAACTAA+CGG | 0.675396 | 4.3:-20430029 | None:intergenic |
| AGCTCTCCAAAGGAGAGTGT+AGG | 0.679417 | 4.3:-20429492 | None:intergenic |
| TTTCCCTACGATAAGAGCAG+AGG | 0.696161 | 4.3:-20429721 | None:intergenic |
| ACTTCCTCCCATTAGCACCG+TGG | 0.699326 | 4.3:-20430259 | None:intergenic |
| CAACACTGCAGAGAGAACGA+TGG | 0.723685 | 4.3:-20429457 | None:intergenic |
| CCGTTAGGAGCAACTAACGG+CGG | 0.783376 | 4.3:-20430026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAAACTACTGAAAAATACA+AGG | + | chr4.3:20429692-20429711 | MS.gene053547:CDS | 25.0% |
| ACACTTGGAAAGAATCTAAA+AGG | + | chr4.3:20429765-20429784 | MS.gene053547:CDS | 30.0% | |
| ACTACTGAAAAATACAAGGT+AGG | + | chr4.3:20429696-20429715 | MS.gene053547:CDS | 30.0% | |
| GTTTACGAAATCAACGATTA+TGG | - | chr4.3:20429625-20429644 | None:intergenic | 30.0% | |
| TGAAAATACCCGTTGTTAAA+CGG | - | chr4.3:20430116-20430135 | None:intergenic | 30.0% | |
| TTCTATAACTGTTGTGCTTA+CGG | + | chr4.3:20429830-20429849 | MS.gene053547:CDS | 30.0% | |
| ! | CCTTTTCATCAACCTATTTA+CGG | + | chr4.3:20429993-20430012 | MS.gene053547:CDS | 30.0% |
| ! | TTTAACAACGGGTATTTTCA+GGG | + | chr4.3:20430116-20430135 | MS.gene053547:CDS | 30.0% |
| ACCGTTAATCTAATCTGGTA+CGG | + | chr4.3:20429576-20429595 | MS.gene053547:CDS | 35.0% | |
| AGAACTCCTTATATTTGGGT+TGG | + | chr4.3:20429933-20429952 | MS.gene053547:CDS | 35.0% | |
| AGCGAGAACTCCTTATATTT+GGG | + | chr4.3:20429929-20429948 | MS.gene053547:CDS | 35.0% | |
| CTTGTACTCAAGTACCATAA+CGG | + | chr4.3:20429531-20429550 | MS.gene053547:CDS | 35.0% | |
| GATGGCAAAGTTGTAATTAG+AGG | - | chr4.3:20429442-20429461 | None:intergenic | 35.0% | |
| GTTACGAATCCGTTTAACAA+CGG | + | chr4.3:20430104-20430123 | MS.gene053547:CDS | 35.0% | |
| TCCGTACCAGATTAGATTAA+CGG | - | chr4.3:20429580-20429599 | None:intergenic | 35.0% | |
| TCTTTCCAAGTGTATAAGCA+GGG | - | chr4.3:20429758-20429777 | None:intergenic | 35.0% | |
| TTACGAATCCGTTTAACAAC+GGG | + | chr4.3:20430105-20430124 | MS.gene053547:CDS | 35.0% | |
| TTATGGTACTTGAGTACAAG+TGG | - | chr4.3:20429531-20429550 | None:intergenic | 35.0% | |
| TTCTTTCCAAGTGTATAAGC+AGG | - | chr4.3:20429759-20429778 | None:intergenic | 35.0% | |
| ! | GATAAACTTGGCTACACTTT+TGG | + | chr4.3:20430073-20430092 | MS.gene053547:CDS | 35.0% |
| ! | GTTTAACAACGGGTATTTTC+AGG | + | chr4.3:20430115-20430134 | MS.gene053547:CDS | 35.0% |
| !! | CCGTAAATAGGTTGATGAAA+AGG | - | chr4.3:20429996-20430015 | None:intergenic | 35.0% |
| AATCAACGATTATGGAGCGT+TGG | - | chr4.3:20429617-20429636 | None:intergenic | 40.0% | |
| AGCTCACCGTTAATCTAATC+TGG | + | chr4.3:20429571-20429590 | MS.gene053547:CDS | 40.0% | |
| GAGCGAGAACTCCTTATATT+TGG | + | chr4.3:20429928-20429947 | MS.gene053547:CDS | 40.0% | |
| GATTCTGTATGAGTCGTTGT+GGG | + | chr4.3:20429874-20429893 | MS.gene053547:CDS | 40.0% | |
| GCGAAAGATGTTAACGTTGA+AGG | + | chr4.3:20429852-20429871 | MS.gene053547:CDS | 40.0% | |
| GCGTTTCCAACCCAAATATA+AGG | - | chr4.3:20429942-20429961 | None:intergenic | 40.0% | |
| TTCTTGTACAAGCTCTCCAA+AGG | - | chr4.3:20429505-20429524 | None:intergenic | 40.0% | |
| ! | TGAGCTTTCCTTTAAGAAGC+TGG | - | chr4.3:20429557-20429576 | None:intergenic | 40.0% |
| CAAGTGTATAAGCAGGGTGT+AGG | - | chr4.3:20429752-20429771 | None:intergenic | 45.0% | |
| CATAACGGCCAGCTTCTTAA+AGG | + | chr4.3:20429546-20429565 | MS.gene053547:CDS | 45.0% | |
| CTACACCCTGCTTATACACT+TGG | + | chr4.3:20429750-20429769 | MS.gene053547:CDS | 45.0% | |
| GATCCTCTGCTCTTATCGTA+GGG | + | chr4.3:20429718-20429737 | MS.gene053547:CDS | 45.0% | |
| GGATCTAGCTATAATGCCCA+CGG | + | chr4.3:20430242-20430261 | MS.gene053547:CDS | 45.0% | |
| GGATTCTGTATGAGTCGTTG+TGG | + | chr4.3:20429873-20429892 | MS.gene053547:CDS | 45.0% | |
| GTTCTACCTACACTCTCCTT+TGG | + | chr4.3:20429486-20429505 | MS.gene053547:CDS | 45.0% | |
| GTTTGGAAGTGGAGCTTATC+CGG | + | chr4.3:20430184-20430203 | MS.gene053547:CDS | 45.0% | |
| TCACCGTTAGGAGCAACTAA+CGG | - | chr4.3:20430032-20430051 | None:intergenic | 45.0% | |
| TCTTGCATGCCGAAGTTTGA+GGG | - | chr4.3:20430307-20430326 | None:intergenic | 45.0% | |
| TGACGGGATGGTGATAAACT+TGG | + | chr4.3:20430061-20430080 | MS.gene053547:CDS | 45.0% | |
| TTTCCCTACGATAAGAGCAG+AGG | - | chr4.3:20429724-20429743 | None:intergenic | 45.0% | |
| TTTGGAAGTGGAGCTTATCC+GGG | + | chr4.3:20430185-20430204 | MS.gene053547:CDS | 45.0% | |
| ! | AACTTGGCTACACTTTTGGC+TGG | + | chr4.3:20430077-20430096 | MS.gene053547:CDS | 45.0% |
| ! | ATAATGCCCACGGTGCTAAT+GGG | + | chr4.3:20430252-20430271 | MS.gene053547:CDS | 45.0% |
| ! | CTTTAAGAAGCTGGCCGTTA+TGG | - | chr4.3:20429548-20429567 | None:intergenic | 45.0% |
| ! | TATAATGCCCACGGTGCTAA+TGG | + | chr4.3:20430251-20430270 | MS.gene053547:CDS | 45.0% |
| ! | TGTACTGGTGTGTTTGGAAG+TGG | + | chr4.3:20430173-20430192 | MS.gene053547:CDS | 45.0% |
| ! | TTCAGTAGTTTTCCACCACG+CGG | - | chr4.3:20429685-20429704 | None:intergenic | 45.0% |
| !! | ACGATTATGGAGCGTTGGAT+TGG | - | chr4.3:20429612-20429631 | None:intergenic | 45.0% |
| !! | CGATTATGGAGCGTTGGATT+GGG | - | chr4.3:20429611-20429630 | None:intergenic | 45.0% |
| !! | GATTATGGAGCGTTGGATTG+GGG | - | chr4.3:20429610-20429629 | None:intergenic | 45.0% |
| CAACACTGCAGAGAGAACGA+TGG | - | chr4.3:20429460-20429479 | None:intergenic | 50.0% | |
| GATGTGGGACCCTCAAACTT+CGG | + | chr4.3:20430295-20430314 | MS.gene053547:CDS | 50.0% | |
| GGATCCTCTGCTCTTATCGT+AGG | + | chr4.3:20429717-20429736 | MS.gene053547:CDS | 50.0% | |
| GGTGTCTGTGGTCCGTAAAT+AGG | - | chr4.3:20430008-20430027 | None:intergenic | 50.0% | |
| GTAAACTCTCTCAGCACCAC+CGG | + | chr4.3:20429639-20429658 | MS.gene053547:CDS | 50.0% | |
| GTCTTGCATGCCGAAGTTTG+AGG | - | chr4.3:20430308-20430327 | None:intergenic | 50.0% | |
| TCAACACCAACGTCACCGTT+AGG | - | chr4.3:20430044-20430063 | None:intergenic | 50.0% | |
| ! | AGCTCTCCAAAGGAGAGTGT+AGG | - | chr4.3:20429495-20429514 | None:intergenic | 50.0% |
| ! | GTTCTTGTTGATGGGGCAAG+TGG | + | chr4.3:20430221-20430240 | MS.gene053547:CDS | 50.0% |
| !! | AACGGTGACGTTGGTGTTGA+CGG | + | chr4.3:20430044-20430063 | MS.gene053547:CDS | 50.0% |
| !!! | TGGGAGGAAGTACCTTTTGC+CGG | + | chr4.3:20430271-20430290 | MS.gene053547:CDS | 50.0% |
| AAAAGGCCACGCGCATTGTC+CGG | - | chr4.3:20429979-20429998 | None:intergenic | 55.0% | |
| ACTTCCTCCCATTAGCACCG+TGG | - | chr4.3:20430262-20430281 | None:intergenic | 55.0% | |
| ATGAGTCGTTGTGGGACCCA+TGG | + | chr4.3:20429882-20429901 | MS.gene053547:CDS | 55.0% | |
| CCGCCGTTAGTTGCTCCTAA+CGG | + | chr4.3:20430026-20430045 | MS.gene053547:CDS | 55.0% | |
| CCGTTAGGAGCAACTAACGG+CGG | - | chr4.3:20430029-20430048 | None:intergenic | 55.0% | |
| CGGGTCGGGTTCTTGTTGAT+GGG | + | chr4.3:20430213-20430232 | MS.gene053547:CDS | 55.0% | |
| CTTCCTCCCATTAGCACCGT+GGG | - | chr4.3:20430261-20430280 | None:intergenic | 55.0% | |
| GGGTCGGGTTCTTGTTGATG+GGG | + | chr4.3:20430214-20430233 | MS.gene053547:CDS | 55.0% | |
| GTTGCTCCTAACGGTGACGT+TGG | + | chr4.3:20430035-20430054 | MS.gene053547:CDS | 55.0% | |
| TGGAGCTTATCCGGGTTACG+CGG | + | chr4.3:20430193-20430212 | MS.gene053547:CDS | 55.0% | |
| ! | ACGGCGTGTACTGGTGTGTT+TGG | + | chr4.3:20430167-20430186 | MS.gene053547:CDS | 55.0% |
| ! | AGTACCTTTTGCCGGCGATG+TGG | + | chr4.3:20430279-20430298 | MS.gene053547:CDS | 55.0% |
| ! | AGTAGTTTTCCACCACGCGG+AGG | - | chr4.3:20429682-20429701 | None:intergenic | 55.0% |
| ! | GTACCTTTTGCCGGCGATGT+GGG | + | chr4.3:20430280-20430299 | MS.gene053547:CDS | 55.0% |
| !! | ACGGTGACGTTGGTGTTGAC+GGG | + | chr4.3:20430045-20430064 | MS.gene053547:CDS | 55.0% |
| !! | CGGGTATTTTCAGGGACCAG+CGG | + | chr4.3:20430124-20430143 | MS.gene053547:CDS | 55.0% |
| !! | GTATTTTCAGGGACCAGCGG+CGG | + | chr4.3:20430127-20430146 | MS.gene053547:CDS | 55.0% |
| !! | TGACGTTGGTGTTGACGGGA+TGG | + | chr4.3:20430049-20430068 | MS.gene053547:CDS | 55.0% |
| AAAGGCCACGCGCATTGTCC+GGG | - | chr4.3:20429978-20429997 | None:intergenic | 60.0% | |
| AACGCTGAGACGCTCTGTCC+CGG | + | chr4.3:20429957-20429976 | MS.gene053547:CDS | 60.0% | |
| CACGCCGTTACAGCCTCAAG+CGG | - | chr4.3:20430155-20430174 | None:intergenic | 60.0% | |
| CTTATCCGGGTTACGCGGGT+CGG | + | chr4.3:20430198-20430217 | MS.gene053547:CDS | 60.0% | |
| GAGGCTGTAACGGCGTGTAC+TGG | + | chr4.3:20430158-20430177 | MS.gene053547:CDS | 60.0% | |
| GCAACTAACGGCGGTGTCTG+TGG | - | chr4.3:20430020-20430039 | None:intergenic | 60.0% | |
| GCCACGTCGGACAGAACCAT+GGG | - | chr4.3:20429901-20429920 | None:intergenic | 60.0% | |
| GCGGGTCGGGTTCTTGTTGA+TGG | + | chr4.3:20430212-20430231 | MS.gene053547:CDS | 60.0% | |
| GGAGCTTATCCGGGTTACGC+GGG | + | chr4.3:20430194-20430213 | MS.gene053547:CDS | 60.0% | |
| GGTTCTGTCCGACGTGGCAA+CGG | + | chr4.3:20429903-20429922 | MS.gene053547:CDS | 60.0% | |
| GTTTGAGGGTCCCACATCGC+CGG | - | chr4.3:20430293-20430312 | None:intergenic | 60.0% | |
| TGCCACGTCGGACAGAACCA+TGG | - | chr4.3:20429902-20429921 | None:intergenic | 60.0% | |
| TTATCCGGGTTACGCGGGTC+GGG | + | chr4.3:20430199-20430218 | MS.gene053547:CDS | 60.0% | |
| ! | ACCCATGGTTCTGTCCGACG+TGG | + | chr4.3:20429897-20429916 | MS.gene053547:CDS | 60.0% |
| ! | ATGCCCACGGTGCTAATGGG+AGG | + | chr4.3:20430255-20430274 | MS.gene053547:CDS | 60.0% |
| AGAACCCGACCCGCGTAACC+CGG | - | chr4.3:20430206-20430225 | None:intergenic | 65.0% | |
| CACGCGGAGGCTGATGGAAG+AGG | - | chr4.3:20429669-20429688 | None:intergenic | 65.0% | |
| CTCTTCCATCAGCCTCCGCG+TGG | + | chr4.3:20429667-20429686 | MS.gene053547:CDS | 65.0% | |
| GGCGCCGCTTGAGGCTGTAA+CGG | + | chr4.3:20430148-20430167 | MS.gene053547:CDS | 65.0% | |
| GGTCCCACATCGCCGGCAAA+AGG | - | chr4.3:20430286-20430305 | None:intergenic | 65.0% | |
| TCGCTCCACCGTTGCCACGT+CGG | - | chr4.3:20429914-20429933 | None:intergenic | 65.0% | |
| TCTGTCCCGGACAATGCGCG+TGG | + | chr4.3:20429970-20429989 | MS.gene053547:CDS | 65.0% | |
| TCTGTCCGACGTGGCAACGG+TGG | + | chr4.3:20429906-20429925 | MS.gene053547:CDS | 65.0% | |
| TTCCACCACGCGGAGGCTGA+TGG | - | chr4.3:20429675-20429694 | None:intergenic | 65.0% | |
| TTCCATCAGCCTCCGCGTGG+TGG | + | chr4.3:20429670-20429689 | MS.gene053547:CDS | 65.0% | |
| ! | GGCTGATGGAAGAGGCGCAC+CGG | - | chr4.3:20429661-20429680 | None:intergenic | 65.0% |
| ! | TGATGGAAGAGGCGCACCGG+TGG | - | chr4.3:20429658-20429677 | None:intergenic | 65.0% |
| ! | ACCAGCGGCGGCGCCGCTTG+AGG | + | chr4.3:20430139-20430158 | MS.gene053547:CDS | 80.0% |
| ! | GCCTCAAGCGGCGCCGCCGC+TGG | - | chr4.3:20430143-20430162 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20429435 | 20430337 | 20429435 | ID=MS.gene053547 |
| chr4.3 | mRNA | 20429435 | 20430337 | 20429435 | ID=MS.gene053547.t1;Parent=MS.gene053547 |
| chr4.3 | exon | 20429435 | 20430337 | 20429435 | ID=MS.gene053547.t1.exon1;Parent=MS.gene053547.t1 |
| chr4.3 | CDS | 20429435 | 20430337 | 20429435 | ID=cds.MS.gene053547.t1;Parent=MS.gene053547.t1 |
| Gene Sequence |
| Protein sequence |
