AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90615

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90615.t1 MTR_5g084750 96.528 288 10 0 1 288 1 288 0.0 581
MS.gene90615.t1 MTR_5g084770 79.577 284 57 1 6 288 4 287 1.46e-171 478
MS.gene90615.t1 MTR_3g464730 60.714 280 109 1 8 286 6 285 1.96e-123 357
MS.gene90615.t1 MTR_5g084790 60.150 266 106 0 23 288 25 290 3.37e-122 353
MS.gene90615.t1 MTR_3g082830 60.153 261 104 0 28 288 36 296 6.43e-119 345
MS.gene90615.t1 MTR_3g114120 43.678 261 147 0 28 288 45 305 1.84e-77 240
MS.gene90615.t1 MTR_8g014910 41.577 279 160 1 11 286 10 288 1.06e-76 238
MS.gene90615.t1 MTR_2g100620 44.788 259 143 0 28 286 29 287 3.05e-76 236
MS.gene90615.t1 MTR_1g025780 43.529 255 143 1 28 282 39 292 1.33e-75 235
MS.gene90615.t1 MTR_8g075220 44.697 264 140 3 25 282 34 297 1.16e-74 233
MS.gene90615.t1 MTR_8g075230 39.721 287 171 1 4 288 8 294 2.62e-73 229
MS.gene90615.t1 MTR_2g084585 41.497 294 165 3 1 289 1 292 4.36e-73 228
MS.gene90615.t1 MTR_8g075200 44.015 259 144 1 25 282 35 293 4.72e-73 230
MS.gene90615.t1 MTR_3g114090 43.137 255 144 1 29 282 35 289 1.56e-72 227
MS.gene90615.t1 MTR_5g084880 95.370 108 5 0 181 288 4 111 1.32e-71 217
MS.gene90615.t1 MTR_5g022630 42.205 263 150 2 28 288 41 303 5.25e-71 223
MS.gene90615.t1 MTR_1g025680 39.502 281 161 2 17 288 13 293 6.11e-69 221
MS.gene90615.t1 MTR_5g022640 41.221 262 153 1 28 288 41 302 1.33e-68 217
MS.gene90615.t1 MTR_1g025720 37.722 281 167 1 11 283 10 290 1.59e-68 217
MS.gene90615.t1 MTR_5g074270 40.152 264 157 1 23 285 26 289 2.26e-68 216
MS.gene90615.t1 MTR_1g025760 38.745 271 165 1 19 288 69 339 9.93e-68 216
MS.gene90615.t1 MTR_2g015080 42.586 263 145 3 8 264 16 278 1.78e-67 214
MS.gene90615.t1 MTR_4g087985 42.742 248 137 2 24 266 30 277 2.15e-67 214
MS.gene90615.t1 MTR_1g025700 37.193 285 171 1 6 282 18 302 1.54e-66 212
MS.gene90615.t1 MTR_4g056280 39.310 290 172 2 1 288 1 288 3.89e-65 208
MS.gene90615.t1 MTR_4g056160 40.364 275 159 2 17 288 14 286 5.85e-64 205
MS.gene90615.t1 MTR_7g116570 35.069 288 182 4 4 288 8 293 1.09e-60 197
MS.gene90615.t1 MTR_1g025910 39.683 252 149 2 35 285 41 290 2.33e-60 196
MS.gene90615.t1 MTR_7g116510 37.063 286 172 4 6 288 5 285 1.68e-59 194
MS.gene90615.t1 MTR_7g116520 34.948 289 179 5 3 288 11 293 1.34e-57 189
MS.gene90615.t1 MTR_1g069175 36.552 290 179 4 1 286 4 292 1.44e-57 189
MS.gene90615.t1 MTR_1g079540 35.294 289 180 5 4 288 5 290 1.63e-57 189
MS.gene90615.t1 MTR_3g435540 40.230 261 147 7 33 288 26 282 1.11e-55 184
MS.gene90615.t1 MTR_6g021530 35.811 296 175 7 1 288 1 289 1.21e-55 184
MS.gene90615.t1 MTR_1g024890 38.783 263 154 5 30 288 32 291 1.39e-55 184
MS.gene90615.t1 MTR_5g083040 37.037 270 162 3 26 288 28 296 6.78e-54 179
MS.gene90615.t1 MTR_7g116500 34.375 288 175 5 4 288 16 292 1.88e-53 178
MS.gene90615.t1 MTR_1g079530 39.916 238 138 4 30 264 29 264 2.45e-52 175
MS.gene90615.t1 MTR_4g019880 34.828 290 173 6 4 288 15 293 8.94e-51 171
MS.gene90615.t1 MTR_4g108690 37.308 260 156 6 33 288 30 286 1.25e-50 171
MS.gene90615.t1 MTR_8g079050 35.424 271 166 5 20 282 27 296 1.39e-49 168
MS.gene90615.t1 MTR_5g078210 37.066 259 157 5 33 288 28 283 7.72e-49 165
MS.gene90615.t1 MTR_8g087870 37.743 257 152 5 25 277 24 276 1.94e-48 164
MS.gene90615.t1 MTR_5g078210 37.066 259 157 5 33 288 28 283 4.33e-48 164
MS.gene90615.t1 MTR_0565s0010 35.495 293 175 7 1 288 8 291 5.56e-48 164
MS.gene90615.t1 MTR_3g024510 36.940 268 157 7 27 288 35 296 1.90e-47 162
MS.gene90615.t1 MTR_7g008060 31.834 289 176 7 3 288 9 279 2.63e-47 162
MS.gene90615.t1 MTR_4g035353 30.375 293 196 6 1 288 1 290 4.67e-46 159
MS.gene90615.t1 MTR_2g044100 37.847 288 164 7 8 288 20 299 5.61e-46 159
MS.gene90615.t1 MTR_3g005650 34.173 278 173 7 8 282 8 278 9.51e-46 158
MS.gene90615.t1 MTR_2g033930 33.803 284 180 5 4 282 3 283 1.37e-44 155
MS.gene90615.t1 MTR_8g087890 34.962 266 165 5 27 288 28 289 3.36e-44 154
MS.gene90615.t1 MTR_2g033920 34.340 265 167 4 28 288 33 294 1.76e-43 150
MS.gene90615.t1 MTR_2g033920 34.340 265 167 4 28 288 33 294 3.30e-43 151
MS.gene90615.t1 MTR_5g009100 34.483 261 162 6 33 288 49 305 1.49e-42 150
MS.gene90615.t1 MTR_2g017875 38.272 243 136 8 27 261 31 267 5.99e-42 148
MS.gene90615.t1 MTR_3g098270 29.966 297 198 6 1 288 1 296 2.05e-41 147
MS.gene90615.t1 MTR_4g122200 33.574 277 175 5 12 283 17 289 4.62e-41 145
MS.gene90615.t1 MTR_3g005660 35.235 298 169 12 1 281 1 291 1.00e-39 142
MS.gene90615.t1 MTR_1g079590 40.000 170 98 3 30 196 31 199 1.24e-39 138
MS.gene90615.t1 MTR_4g036375 36.649 191 117 1 1 187 1 191 1.44e-39 137
MS.gene90615.t1 MTR_2g017955 35.772 246 146 8 25 264 28 267 2.62e-39 141
MS.gene90615.t1 MTR_2g017925 34.686 271 160 9 5 264 3 267 1.75e-38 139
MS.gene90615.t1 MTR_0009s0250 33.456 272 163 7 12 276 11 271 2.91e-38 138
MS.gene90615.t1 MTR_5g093090 32.714 269 168 6 28 288 26 289 3.42e-37 134
MS.gene90615.t1 MTR_8g031390 32.877 292 176 9 4 288 8 286 5.87e-37 134
MS.gene90615.t1 MTR_5g093090 32.714 269 168 6 28 288 26 289 9.91e-37 134
MS.gene90615.t1 MTR_8g031390 32.877 292 176 9 4 288 8 286 2.39e-36 134
MS.gene90615.t1 MTR_3g023220 35.039 254 149 9 27 274 30 273 4.03e-36 132
MS.gene90615.t1 MTR_8g074570 31.359 287 176 7 11 286 19 295 1.45e-35 131
MS.gene90615.t1 MTR_8g031430 33.684 285 171 10 6 286 15 285 1.50e-35 131
MS.gene90615.t1 MTR_3g052480 32.197 264 165 7 28 282 31 289 3.02e-35 130
MS.gene90615.t1 MTR_3g052490 31.599 269 171 6 28 288 30 293 4.46e-35 130
MS.gene90615.t1 MTR_8g022790 29.153 295 196 7 1 288 5 293 1.57e-33 125
MS.gene90615.t1 MTR_8g031420 31.164 292 182 9 2 286 4 283 2.23e-33 125
MS.gene90615.t1 MTR_8g022810 32.677 254 161 6 30 281 41 286 2.78e-33 125
MS.gene90615.t1 MTR_8g074580 32.197 264 169 5 28 285 42 301 1.12e-32 124
MS.gene90615.t1 MTR_3g052580 30.075 266 174 6 28 286 26 286 4.54e-32 122
MS.gene90615.t1 MTR_3g052580 30.075 266 174 6 28 286 25 285 6.85e-32 122
MS.gene90615.t1 MTR_2g017965 31.939 263 162 10 11 264 14 268 8.69e-32 121
MS.gene90615.t1 MTR_8g074560 30.037 273 172 7 28 287 29 295 1.06e-31 121
MS.gene90615.t1 MTR_8g031400 31.579 285 179 9 8 288 15 287 4.08e-31 119
MS.gene90615.t1 MTR_3g021460 33.083 266 163 10 8 264 6 265 5.98e-31 119
MS.gene90615.t1 MTR_2g017915 33.184 223 135 7 6 218 4 222 2.09e-30 117
MS.gene90615.t1 MTR_2g461580 32.197 264 165 9 8 264 9 265 2.18e-29 114
MS.gene90615.t1 MTR_8g022810 34.975 203 125 5 30 230 41 238 8.51e-29 112
MS.gene90615.t1 MTR_6g034400 40.984 122 72 0 83 204 4 125 2.47e-27 103
MS.gene90615.t1 MTR_2g018015 34.653 202 124 6 26 222 32 230 4.30e-27 107
MS.gene90615.t1 MTR_1108s0010 39.241 158 81 3 133 288 3 147 2.62e-26 103
MS.gene90615.t1 MTR_5g093090 36.364 176 102 5 28 195 26 199 2.02e-25 100
MS.gene90615.t1 MTR_2g087292 28.889 270 127 7 12 276 11 220 9.21e-25 100
MS.gene90615.t1 MTR_8g089805 26.797 306 186 12 8 288 12 304 1.86e-24 101
MS.gene90615.t1 MTR_1g030340 28.852 305 184 11 3 288 15 305 2.79e-24 101
MS.gene90615.t1 MTR_1g030268 30.000 280 154 13 13 265 15 279 1.69e-23 98.2
MS.gene90615.t1 MTR_1g030268 28.525 305 176 13 11 288 13 302 2.89e-23 98.6
MS.gene90615.t1 MTR_7g087190 26.974 304 189 12 1 284 14 304 6.31e-23 97.4
MS.gene90615.t1 MTR_1g030230 28.146 302 180 12 11 288 6 294 1.31e-21 93.6
MS.gene90615.t1 MTR_1g030275 29.470 302 172 13 13 288 15 301 3.70e-21 92.4
MS.gene90615.t1 MTR_1g030220 26.948 308 192 11 1 288 8 302 7.35e-21 91.7
MS.gene90615.t1 MTR_6g049220 31.111 180 79 1 28 207 28 162 2.90e-20 85.9
MS.gene90615.t1 MTR_1g060500 31.513 238 141 9 31 263 41 261 1.00e-19 88.2
MS.gene90615.t1 MTR_7g111780 29.779 272 163 12 29 288 34 289 6.19e-18 83.2
MS.gene90615.t1 MTR_1g092740 30.638 235 140 9 31 264 39 251 8.32e-18 82.8
MS.gene90615.t1 MTR_1g060490 30.638 235 142 9 31 263 38 253 1.20e-17 82.0
MS.gene90615.t1 MTR_7g033165 27.509 269 159 10 29 275 32 286 1.49e-17 81.6
MS.gene90615.t1 MTR_5g087690 23.985 271 181 6 28 288 48 303 2.41e-17 81.6
MS.gene90615.t1 MTR_7g033165 27.076 277 166 10 29 283 32 294 2.96e-17 81.3
MS.gene90615.t1 MTR_2g079080 29.242 277 164 11 30 288 30 292 1.99e-16 79.0
MS.gene90615.t1 MTR_7g104220 28.788 264 163 12 28 286 40 283 2.26e-16 78.6
MS.gene90615.t1 MTR_7g113860 25.000 288 188 11 18 288 15 291 3.58e-16 78.2
MS.gene90615.t1 MTR_2g079090 28.881 277 165 11 30 288 30 292 5.61e-16 77.4
MS.gene90615.t1 MTR_0029s0050 29.603 277 163 11 30 288 30 292 1.05e-15 76.6
MS.gene90615.t1 MTR_1g092690 27.237 257 159 10 31 284 52 283 1.13e-15 76.6
MS.gene90615.t1 MTR_8g089805 26.267 217 133 7 91 288 28 236 1.36e-15 76.3
MS.gene90615.t1 MTR_3g463960 27.972 286 168 12 26 288 38 308 1.41e-15 76.6
MS.gene90615.t1 MTR_3g463950 27.972 286 168 12 26 288 38 308 1.41e-15 76.6
MS.gene90615.t1 MTR_3g463970 27.972 286 168 12 26 288 38 308 1.41e-15 76.6
MS.gene90615.t1 MTR_3g463940 27.972 286 168 12 26 288 38 308 1.41e-15 76.6
MS.gene90615.t1 MTR_6g007100 26.000 300 188 10 1 283 4 286 2.42e-15 75.9
MS.gene90615.t1 MTR_0029s0100 29.603 277 163 11 30 288 30 292 3.32e-15 75.1
MS.gene90615.t1 MTR_3g463930 27.304 293 168 11 26 288 38 315 1.07e-14 73.9
MS.gene90615.t1 MTR_0127s0040 30.588 170 103 7 128 288 4 167 1.92e-14 71.6
MS.gene90615.t1 MTR_6g007095 25.574 305 189 9 3 283 8 298 3.22e-14 73.2
MS.gene90615.t1 MTR_2g043980 24.918 305 190 13 6 288 10 297 3.41e-14 72.4
MS.gene90615.t1 MTR_7g116870 21.886 297 201 11 6 286 9 290 1.76e-13 70.5
MS.gene90615.t1 MTR_6g007090 24.590 305 184 11 3 283 14 296 1.07e-12 68.2
MS.gene90615.t1 MTR_2g017925 31.469 143 90 5 127 264 25 164 1.95e-12 66.2
MS.gene90615.t1 MTR_1g092760 26.809 235 146 10 31 263 40 250 2.96e-12 66.6
MS.gene90615.t1 MTR_1g092750 26.923 234 151 9 31 264 41 254 3.99e-12 66.2
MS.gene90615.t1 MTR_3g448360 25.442 283 168 11 30 288 29 292 5.52e-12 65.9
MS.gene90615.t1 MTR_8g038680 23.345 287 187 9 18 283 15 289 5.86e-12 65.9
MS.gene90615.t1 MTR_2g015630 26.429 280 166 11 35 288 36 301 8.58e-12 65.5
MS.gene90615.t1 MTR_6g049230 40.698 86 47 2 205 288 74 157 1.95e-11 62.4
MS.gene90615.t1 MTR_2g015580 24.342 304 195 11 6 286 23 314 3.92e-11 63.5
MS.gene90615.t1 MTR_8g062580 45.161 62 34 0 226 287 64 125 9.78e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90615.t1 AT2G42990 59.075 281 111 1 8 288 10 286 2.52e-125 361
MS.gene90615.t1 AT2G04570 58.741 286 116 1 1 286 1 284 1.91e-121 352
MS.gene90615.t1 AT4G26790 60.311 257 102 0 29 285 28 284 3.19e-116 338
MS.gene90615.t1 AT4G26790 60.311 257 102 0 29 285 28 284 3.19e-116 338
MS.gene90615.t1 AT3G43550 40.484 289 167 3 1 288 1 285 2.49e-76 234
MS.gene90615.t1 AT1G59406 41.176 289 165 4 1 288 1 285 1.41e-75 234
MS.gene90615.t1 AT1G59030 41.176 289 165 4 1 288 1 285 1.41e-75 234
MS.gene90615.t1 AT1G58725 41.176 289 165 4 1 288 1 285 1.41e-75 234
MS.gene90615.t1 AT1G58520 43.130 262 144 3 28 288 28 285 2.28e-74 231
MS.gene90615.t1 AT1G58525 43.130 262 144 3 28 288 28 285 2.28e-74 231
MS.gene90615.t1 AT5G45960 42.963 270 145 3 23 285 40 307 6.38e-74 231
MS.gene90615.t1 AT3G14820 38.408 289 169 4 3 288 4 286 1.26e-73 229
MS.gene90615.t1 AT1G06990 39.310 290 168 2 1 288 14 297 2.22e-72 227
MS.gene90615.t1 AT3G16370 41.699 259 151 0 28 286 28 286 2.13e-71 224
MS.gene90615.t1 AT5G42170 41.379 261 150 1 28 288 48 305 6.34e-71 223
MS.gene90615.t1 AT1G75900 39.085 284 171 2 6 288 18 300 1.40e-69 219
MS.gene90615.t1 AT2G24560 42.966 263 147 3 29 288 33 295 2.97e-69 217
MS.gene90615.t1 AT2G31540 40.411 292 161 5 8 288 7 296 4.02e-69 218
MS.gene90615.t1 AT2G24560 42.966 263 147 3 29 288 33 295 2.25e-68 216
MS.gene90615.t1 AT2G30220 41.608 286 155 5 13 288 11 294 7.14e-68 215
MS.gene90615.t1 AT1G20120 40.000 270 161 1 20 288 67 336 1.96e-67 215
MS.gene90615.t1 AT5G63170 40.925 281 162 3 6 285 4 281 2.90e-67 213
MS.gene90615.t1 AT5G03810 43.561 264 144 2 28 288 28 289 4.28e-67 213
MS.gene90615.t1 AT5G45950 41.379 261 149 3 25 285 35 291 1.38e-66 212
MS.gene90615.t1 AT3G53100 40.876 274 154 4 22 289 20 291 1.61e-66 211
MS.gene90615.t1 AT1G58430 38.699 292 166 5 8 288 7 296 2.51e-66 211
MS.gene90615.t1 AT1G75880 38.112 286 173 1 7 288 25 310 3.41e-66 211
MS.gene90615.t1 AT3G43570 42.489 233 126 3 6 235 3 230 5.84e-66 209
MS.gene90615.t1 AT5G03820 42.379 269 146 3 28 289 31 297 7.15e-66 210
MS.gene90615.t1 AT2G30310 40.426 282 161 4 12 288 16 295 1.04e-65 209
MS.gene90615.t1 AT5G03820 42.379 269 146 3 28 289 59 325 1.43e-65 210
MS.gene90615.t1 AT1G75880 37.979 287 173 2 7 288 25 311 9.94e-65 207
MS.gene90615.t1 AT1G75890 36.713 286 177 2 7 288 21 306 1.25e-64 207
MS.gene90615.t1 AT1G75890 36.713 286 177 2 7 288 50 335 2.23e-64 207
MS.gene90615.t1 AT1G73610 41.699 259 146 2 28 285 33 287 1.79e-63 203
MS.gene90615.t1 AT1G20135 38.869 283 169 3 8 288 6 286 4.36e-63 202
MS.gene90615.t1 AT5G22810 39.560 273 158 3 19 286 23 293 8.17e-63 202
MS.gene90615.t1 AT1G75890 35.117 299 177 3 7 288 21 319 3.87e-61 198
MS.gene90615.t1 AT1G23500 43.629 259 142 2 28 285 33 288 4.26e-60 195
MS.gene90615.t1 AT1G20130 36.900 271 158 2 28 288 182 449 4.60e-59 196
MS.gene90615.t1 AT1G20130 36.900 271 158 2 28 288 202 469 7.06e-59 196
MS.gene90615.t1 AT2G40250 39.326 267 155 2 28 288 34 299 1.98e-58 191
MS.gene90615.t1 AT5G33370 37.722 281 166 5 11 288 15 289 2.74e-58 189
MS.gene90615.t1 AT5G33370 37.722 281 166 5 11 288 15 289 8.22e-58 189
MS.gene90615.t1 AT4G28780 35.915 284 174 5 8 285 6 287 2.46e-56 186
MS.gene90615.t1 AT1G75910 38.182 275 167 2 11 282 9 283 4.31e-56 184
MS.gene90615.t1 AT5G18430 36.641 262 163 2 30 288 28 289 4.68e-56 185
MS.gene90615.t1 AT1G20132 34.100 261 172 0 28 288 59 319 1.35e-55 184
MS.gene90615.t1 AT3G04290 37.282 287 166 6 7 285 5 285 2.22e-55 183
MS.gene90615.t1 AT1G74460 39.464 261 149 7 33 288 26 282 5.78e-54 179
MS.gene90615.t1 AT1G75920 41.558 231 131 2 29 257 28 256 1.97e-53 177
MS.gene90615.t1 AT2G23540 36.431 269 162 6 23 283 41 308 3.82e-50 170
MS.gene90615.t1 AT1G75920 39.024 246 131 3 29 257 23 266 1.62e-49 167
MS.gene90615.t1 AT1G71691 38.113 265 153 8 28 288 53 310 2.23e-49 166
MS.gene90615.t1 AT1G75930 36.491 285 170 7 11 288 9 289 1.44e-48 165
MS.gene90615.t1 AT1G71691 38.113 265 153 8 28 288 53 310 1.59e-48 166
MS.gene90615.t1 AT4G10950 32.197 264 174 4 28 288 69 330 2.94e-45 157
MS.gene90615.t1 AT3G50400 32.353 272 176 5 19 282 23 294 5.30e-45 156
MS.gene90615.t1 AT1G29670 33.451 284 180 6 7 286 9 287 4.74e-44 154
MS.gene90615.t1 AT5G37690 34.363 259 164 5 33 288 30 285 5.45e-44 153
MS.gene90615.t1 AT5G41890 35.983 239 144 4 33 264 34 270 5.89e-44 154
MS.gene90615.t1 AT4G10950 31.818 264 171 4 28 288 69 326 7.53e-44 154
MS.gene90615.t1 AT1G29670 33.451 284 180 6 7 286 77 355 2.57e-43 153
MS.gene90615.t1 AT1G29660 31.849 292 189 6 1 288 5 290 9.61e-43 150
MS.gene90615.t1 AT5G45670 34.397 282 178 5 11 288 10 288 9.70e-43 150
MS.gene90615.t1 AT5G08460 32.459 305 185 6 1 288 12 312 2.18e-42 150
MS.gene90615.t1 AT2G19060 35.200 250 151 5 15 262 15 255 5.79e-42 148
MS.gene90615.t1 AT1G75920 38.498 213 127 2 47 257 18 228 9.10e-42 146
MS.gene90615.t1 AT5G15720 33.798 287 154 11 23 288 20 291 2.25e-40 142
MS.gene90615.t1 AT5G15720 33.798 287 154 11 23 288 20 291 9.58e-40 142
MS.gene90615.t1 AT4G16230 32.400 250 156 4 8 246 1 248 1.18e-39 139
MS.gene90615.t1 AT2G19010 33.969 262 152 7 10 264 10 257 1.19e-39 142
MS.gene90615.t1 AT4G18970 33.208 265 170 5 28 288 26 287 2.15e-39 141
MS.gene90615.t1 AT2G19010 33.969 262 152 7 10 264 40 287 2.53e-39 141
MS.gene90615.t1 AT4G18970 33.208 265 170 5 28 288 26 287 4.50e-39 141
MS.gene90615.t1 AT2G03980 35.714 252 147 8 29 275 42 283 7.47e-39 140
MS.gene90615.t1 AT2G03980 35.714 252 147 8 29 275 42 283 7.47e-39 140
MS.gene90615.t1 AT2G03980 35.714 252 147 8 29 275 42 283 7.47e-39 140
MS.gene90615.t1 AT2G03980 35.714 252 147 8 29 275 42 283 7.47e-39 140
MS.gene90615.t1 AT5G37690 32.819 259 160 6 33 288 30 277 1.68e-38 139
MS.gene90615.t1 AT1G71250 29.412 289 195 6 4 288 17 300 6.00e-38 138
MS.gene90615.t1 AT1G75920 35.065 231 115 3 29 257 28 225 1.67e-37 135
MS.gene90615.t1 AT1G53920 35.366 246 149 7 26 268 44 282 1.35e-36 134
MS.gene90615.t1 AT5G55050 33.086 269 169 7 28 288 37 302 8.89e-36 132
MS.gene90615.t1 AT2G19050 33.878 245 149 6 27 268 28 262 2.80e-35 128
MS.gene90615.t1 AT2G19050 33.878 245 149 6 27 268 28 262 5.89e-35 129
MS.gene90615.t1 AT1G33811 30.258 271 177 8 27 288 31 298 8.89e-35 129
MS.gene90615.t1 AT5G40990 34.021 291 174 9 8 288 12 294 1.26e-34 129
MS.gene90615.t1 AT4G30140 32.308 260 160 7 10 263 10 259 9.62e-34 126
MS.gene90615.t1 AT1G53940 34.470 264 162 6 30 288 39 296 1.32e-33 125
MS.gene90615.t1 AT1G53940 34.717 265 160 7 30 288 39 296 3.82e-33 125
MS.gene90615.t1 AT2G31550 42.308 156 84 3 137 288 2 155 4.96e-33 121
MS.gene90615.t1 AT1G71120 31.884 276 171 7 19 288 20 284 1.06e-32 124
MS.gene90615.t1 AT2G04020 37.745 204 110 8 29 225 42 235 2.64e-32 120
MS.gene90615.t1 AT2G04020 37.745 204 110 8 29 225 42 235 9.71e-32 120
MS.gene90615.t1 AT3G14225 29.286 280 189 6 16 288 21 298 1.52e-29 115
MS.gene90615.t1 AT3G14225 28.622 283 183 7 16 288 21 294 3.45e-29 114
MS.gene90615.t1 AT1G71691 32.178 202 128 6 91 288 13 209 2.63e-25 102
MS.gene90615.t1 AT1G54020 27.622 286 177 11 1 278 1 264 1.43e-24 102
MS.gene90615.t1 AT1G54010 28.276 290 173 10 4 284 12 275 7.22e-24 100
MS.gene90615.t1 AT1G54000 25.442 283 188 7 6 284 12 275 3.41e-23 98.2
MS.gene90615.t1 AT5G03610 30.833 240 142 9 31 266 44 263 9.28e-23 96.7
MS.gene90615.t1 AT1G53990 27.273 286 184 8 13 288 14 285 1.10e-21 94.0
MS.gene90615.t1 AT1G67830 27.798 277 168 11 27 284 27 290 1.69e-21 93.6
MS.gene90615.t1 AT3G26430 29.078 282 168 12 22 284 23 291 7.30e-21 91.7
MS.gene90615.t1 AT3G14220 28.326 233 145 6 29 257 31 245 5.44e-20 89.0
MS.gene90615.t1 AT5G14450 26.510 298 187 9 9 285 18 304 3.21e-19 87.0
MS.gene90615.t1 AT3G05180 25.357 280 185 7 23 288 29 298 1.81e-18 84.7
MS.gene90615.t1 AT4G16220 43.103 116 61 2 5 120 8 118 2.60e-17 79.7
MS.gene90615.t1 AT3G14210 27.376 263 160 10 30 284 36 275 3.07e-17 81.6
MS.gene90615.t1 AT1G54790 26.087 299 189 10 6 286 8 292 3.20e-17 81.3
MS.gene90615.t1 AT3G09930 30.638 235 144 10 31 263 40 257 4.17e-17 80.9
MS.gene90615.t1 AT3G09930 30.638 235 144 10 31 263 40 257 4.17e-17 80.9
MS.gene90615.t1 AT1G54030 26.829 246 152 9 24 264 46 268 1.20e-16 79.0
MS.gene90615.t1 AT5G15720 26.852 216 128 8 91 288 57 260 2.05e-16 78.6
MS.gene90615.t1 AT1G54030 26.829 246 152 9 24 264 46 268 2.31e-16 79.0
MS.gene90615.t1 AT1G09390 26.756 299 188 12 4 288 12 293 4.81e-16 77.8
MS.gene90615.t1 AT1G28650 25.407 307 201 14 1 288 7 304 2.37e-15 75.9
MS.gene90615.t1 AT2G27360 25.667 300 192 11 8 286 10 299 3.30e-15 75.5
MS.gene90615.t1 AT1G56670 27.835 291 189 11 6 288 19 296 2.80e-14 72.0
MS.gene90615.t1 AT1G56670 27.835 291 189 11 6 288 19 296 2.96e-14 72.8
MS.gene90615.t1 AT1G31550 26.688 311 190 14 2 288 6 302 1.76e-13 70.5
MS.gene90615.t1 AT1G28640 26.014 296 185 15 15 288 19 302 2.01e-13 70.1
MS.gene90615.t1 AT1G28660 25.243 309 199 14 1 288 5 302 2.70e-13 69.7
MS.gene90615.t1 AT1G28570 24.333 300 197 12 8 286 9 299 3.52e-13 69.7
MS.gene90615.t1 AT1G28670 25.806 310 197 14 1 288 5 303 3.56e-13 69.3
MS.gene90615.t1 AT1G31550 26.452 310 190 14 2 287 6 301 4.15e-13 69.3
MS.gene90615.t1 AT3G62280 27.612 268 168 10 21 277 27 279 4.77e-13 68.6
MS.gene90615.t1 AT3G62280 27.612 268 168 10 21 277 27 279 7.53e-13 68.6
MS.gene90615.t1 AT1G28610 25.249 301 190 12 8 286 8 295 1.22e-12 67.8
MS.gene90615.t1 AT1G28660 25.243 309 198 15 1 288 5 301 4.54e-12 66.2
MS.gene90615.t1 AT5G03600 25.311 241 152 11 28 263 47 264 9.00e-12 65.1
MS.gene90615.t1 AT5G03600 25.311 241 152 11 28 263 12 229 9.46e-12 65.1
MS.gene90615.t1 AT1G28600 25.676 296 191 13 11 286 9 295 1.34e-11 64.7
MS.gene90615.t1 AT1G54790 25.170 294 187 11 11 286 13 291 2.45e-11 63.9
MS.gene90615.t1 AT1G54790 25.170 294 187 11 11 286 13 291 2.72e-11 63.9
MS.gene90615.t1 AT1G28580 24.542 273 183 10 30 286 37 302 2.72e-11 63.9

Find 62 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGTCACAATGATAATT+TGG 0.139398 5.4:-66957342 None:intergenic
CATTTGTTCCTAAGCTTATT+AGG 0.199666 5.4:-66959176 None:intergenic
GGTGATTCTTCTGTGGATTC+TGG 0.254287 5.4:+66957400 MS.gene90615:CDS
GTACCAGCAGTAATTGTATT+TGG 0.273847 5.4:+66957379 MS.gene90615:CDS
ATTACAAGACCTTCCTTCTA+TGG 0.281099 5.4:+66959534 MS.gene90615:CDS
GGTGTTTGCTTTGCCTCTGC+TGG 0.295560 5.4:+66957616 MS.gene90615:CDS
TGCTTTGCCTCTGCTGGAAC+TGG 0.303366 5.4:+66957622 MS.gene90615:CDS
GACTTTATTGCCGAGGCTTT+CGG 0.314102 5.4:+66957532 MS.gene90615:CDS
ATATTTATAGCTCTTTCTAA+TGG 0.331542 5.4:-66959363 None:intergenic
TATGATATCAAAGCTAAATA+AGG 0.336734 5.4:+66959455 MS.gene90615:CDS
CATAACTGGTCTTATTCCTA+TGG 0.339657 5.4:+66959332 MS.gene90615:CDS
GCAAGTCACAATGATAATTT+GGG 0.347880 5.4:-66957341 None:intergenic
GCTAGGAAATTATCCATAAC+TGG 0.365530 5.4:+66959318 MS.gene90615:CDS
TAAAGAAAACTTACCATAGA+AGG 0.375147 5.4:-66959547 None:intergenic
CATAGGAATAAGACCAGTTA+TGG 0.388785 5.4:-66959331 None:intergenic
GCGCAATATACCGGCATACT+TGG 0.391809 5.4:+66957561 MS.gene90615:CDS
TATTTATAGCTCTTTCTAAT+GGG 0.404823 5.4:-66959362 None:intergenic
GATATCATTGACAATCTCAT+AGG 0.438990 5.4:-66959511 None:intergenic
CACAGAATGTGATACCACTA+TGG 0.445387 5.4:+66959061 MS.gene90615:intron
TTCGAAGGTGGCCGCCCCAC+CGG 0.445538 5.4:+66957481 MS.gene90615:CDS
CGGCGTTAAGCGCAATATAC+CGG 0.459797 5.4:+66957552 MS.gene90615:CDS
GTGAAATGAAGTCGTCTTGT+TGG 0.461389 5.4:-66959225 None:intergenic
TGAAATGAAGTCGTCTTGTT+GGG 0.462720 5.4:-66959224 None:intergenic
TAAGGAGCTACCACAATTGA+AGG 0.463159 5.4:+66959473 MS.gene90615:CDS
ACCACAATTGAAGGCTTTGT+CGG 0.491914 5.4:+66959482 MS.gene90615:CDS
TGATATCATATTCTCCAACT+TGG 0.496067 5.4:-66959442 None:intergenic
ATAACTGGTCTTATTCCTAT+GGG 0.505030 5.4:+66959333 MS.gene90615:CDS
GCATTATACCTAATAAGCTT+AGG 0.514251 5.4:+66959168 MS.gene90615:CDS
AAGGTGGCCGCCCCACCGGA+CGG 0.515128 5.4:+66957485 MS.gene90615:CDS
AACTCTATTTCCTTCCATAG+TGG 0.515309 5.4:-66959075 None:intergenic
GCGCTTAACGCCGAAAGCCT+CGG 0.523225 5.4:-66957542 None:intergenic
CCGTTACAAAACCGTCCGGT+GGG 0.530272 5.4:-66957496 None:intergenic
ACCAGTGACAAAATCATCAA+TGG 0.534151 5.4:-66957596 None:intergenic
AAATCATCAATGGTATAAGC+AGG 0.537907 5.4:-66957586 None:intergenic
TTGTAACGGTCGTACTCCAC+CGG 0.540437 5.4:+66957510 MS.gene90615:CDS
AATTACACTCACTTGGTGCT+AGG 0.542984 5.4:+66959301 MS.gene90615:CDS
CCTTCGAAGTCACGGCCGTA+AGG 0.546404 5.4:-66957466 None:intergenic
TTTGCAATTTAATGCCAAGT+TGG 0.546599 5.4:+66959428 MS.gene90615:CDS
GGCGGCCACCTTCGAAGTCA+CGG 0.546665 5.4:-66957474 None:intergenic
ATATTGCAGAGGATTTCGTT+AGG 0.549205 5.4:+66959277 MS.gene90615:CDS
TGTATTTGGTGATTCTTCTG+TGG 0.556878 5.4:+66957393 MS.gene90615:CDS
TACAAAACCGTCCGGTGGGG+CGG 0.562567 5.4:-66957492 None:intergenic
TAAAGAACTTACTAGTACAT+CGG 0.564144 5.4:-66957662 None:intergenic
TCACCAAATACAATTACTGC+TGG 0.564642 5.4:-66957382 None:intergenic
CCTTACGGCCGTGACTTCGA+AGG 0.565048 5.4:+66957466 MS.gene90615:CDS
GTTAGGAAATTACACTCACT+TGG 0.565749 5.4:+66959294 MS.gene90615:CDS
GCCGACAAAGCCTTCAATTG+TGG 0.574988 5.4:-66959483 None:intergenic
ACCGTTACAAAACCGTCCGG+TGG 0.576280 5.4:-66957497 None:intergenic
GAATGTGATACCACTATGGA+AGG 0.578243 5.4:+66959065 MS.gene90615:intron
AAAGCCTCGGCAATAAAGTC+CGG 0.586613 5.4:-66957529 None:intergenic
AAAATCTTGATATTGTGATA+CGG 0.587133 5.4:-66959247 None:intergenic
ATCATATCCAGTTCCAGCAG+AGG 0.604655 5.4:-66957629 None:intergenic
GGCAAATGAAATCATAAGTG+AGG 0.607082 5.4:+66959146 MS.gene90615:CDS
TCCACCGGACTTTATTGCCG+AGG 0.608219 5.4:+66957525 MS.gene90615:CDS
TACGGCCGTGACTTCGAAGG+TGG 0.608321 5.4:+66957469 MS.gene90615:CDS
TAAGCAGGATCCAAGTATGC+CGG 0.608958 5.4:-66957571 None:intergenic
GAAAACTTACCATAGAAGGA+AGG 0.613060 5.4:-66959543 None:intergenic
ACGACCGTTACAAAACCGTC+CGG 0.625700 5.4:-66957500 None:intergenic
GCCTCGGCAATAAAGTCCGG+TGG 0.627456 5.4:-66957526 None:intergenic
ATATATGCATATGCATAGCA+TGG 0.630439 5.4:+66957305 MS.gene90615:CDS
CGTTACAAAACCGTCCGGTG+GGG 0.639801 5.4:-66957495 None:intergenic
TCTAATGGGAGACAACCCAT+AGG 0.677135 5.4:-66959348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr5.4:66958555-66958536 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG + chr5.4:66958536-66958555 MS.gene90615:intron 0.0%
!! TATATATATATATATATATA+GGG - chr5.4:66958764-66958745 None:intergenic 0.0%
!! ACTAATTAATTAATTAACAT+TGG + chr5.4:66959026-66959045 MS.gene90615:intron 10.0%
!! GTAGTTAAAAATATAAATAA+AGG + chr5.4:66957997-66958016 MS.gene90615:intron 10.0%
!! TGTAATATAAAATTCAAAAA+GGG + chr5.4:66960443-66960462 MS.gene90615:intron 10.0%
!!! TTTTTTTTACAAGATAAATT+TGG + chr5.4:66958122-66958141 MS.gene90615:intron 10.0%
!! ATAGAAAGATATTAACAAAT+TGG - chr5.4:66958332-66958351 None:intergenic 15.0%
!! GTAAAACATAAATCTTAATA+AGG - chr5.4:66957902-66957921 None:intergenic 15.0%
!! GTGTAATATAAAATTCAAAA+AGG + chr5.4:66960442-66960461 MS.gene90615:intron 15.0%
!! TAGTAATTGTAAAAAAAAAG+AGG + chr5.4:66958077-66958096 MS.gene90615:intron 15.0%
!! TTACTCTATTAAAAAAACAA+AGG - chr5.4:66960538-66960557 None:intergenic 15.0%
!!! AATTTCACATAATTTGATTT+TGG + chr5.4:66960296-66960315 MS.gene90615:intron 15.0%
!!! GTTATAGAAAAGTATTATTA+TGG + chr5.4:66958506-66958525 MS.gene90615:intron 15.0%
!!! TAAAAAAAGAACGTTTATTT+TGG - chr5.4:66960337-66960356 None:intergenic 15.0%
!!! TTTCTCTTTTATTTTAATTG+TGG + chr5.4:66958930-66958949 MS.gene90615:intron 15.0%
!! AAAATCTTGATATTGTGATA+CGG - chr5.4:66959250-66959269 None:intergenic 20.0%
!! ACTCAATAAAATATCCAATA+TGG + chr5.4:66958202-66958221 MS.gene90615:intron 20.0%
!! ATATTTATAGCTCTTTCTAA+TGG - chr5.4:66959366-66959385 None:intergenic 20.0%
!! TATGATATCAAAGCTAAATA+AGG + chr5.4:66959455-66959474 MS.gene90615:CDS 20.0%
!! TATTTATAGCTCTTTCTAAT+GGG - chr5.4:66959365-66959384 None:intergenic 20.0%
!! TCATAATATTATGTCCTATT+TGG + chr5.4:66958147-66958166 MS.gene90615:intron 20.0%
!! TCTTATGTTAAAAGAAAAAG+TGG - chr5.4:66959850-66959869 None:intergenic 20.0%
!! TTATGTGATTCATCTTATTA+TGG + chr5.4:66959597-66959616 MS.gene90615:intron 20.0%
!!! AAGAGTAATTTTAAACCTTA+CGG + chr5.4:66957451-66957470 MS.gene90615:CDS 20.0%
!!! ACAATGTGAAATTTGATTTA+AGG - chr5.4:66957757-66957776 None:intergenic 20.0%
!!! ATACATTTTGGATGAAAATA+TGG - chr5.4:66959788-66959807 None:intergenic 20.0%
!!! CAATGTGAAATTTGATTTAA+GGG - chr5.4:66957756-66957775 None:intergenic 20.0%
!!! GAAAGAGCTATAAATATTTT+TGG + chr5.4:66959369-66959388 MS.gene90615:CDS 20.0%
!!! GAATGAAAATTTTTTCGTTT+GGG - chr5.4:66959950-66959969 None:intergenic 20.0%
!!! TCTTTTATTTTAATTGTGGA+TGG + chr5.4:66958934-66958953 MS.gene90615:intron 20.0%
!!! TGAATGAAAATTTTTTCGTT+TGG - chr5.4:66959951-66959970 None:intergenic 20.0%
!!! TTACGCTAATTTTAATATGT+TGG - chr5.4:66958865-66958884 None:intergenic 20.0%
!!! TTTATTTTTGAAGGAATTTG+TGG + chr5.4:66958960-66958979 MS.gene90615:intron 20.0%
!!! TTTTCCATTAATTTGTGTTT+GGG - chr5.4:66957816-66957835 None:intergenic 20.0%
! AAAATTGATGTTCATCTTGT+TGG + chr5.4:66959704-66959723 MS.gene90615:intron 25.0%
! AAAGTGAAAATCACATCTTA+AGG + chr5.4:66958674-66958693 MS.gene90615:intron 25.0%
! AAATATACAAACACACACAT+AGG + chr5.4:66959667-66959686 MS.gene90615:intron 25.0%
! AAATTGATGTTCATCTTGTT+GGG + chr5.4:66959705-66959724 MS.gene90615:intron 25.0%
! ATAAAAGACACCTTCATAAA+AGG - chr5.4:66958577-66958596 None:intergenic 25.0%
! ATAATTGTGTCAAACCAAAT+AGG - chr5.4:66958164-66958183 None:intergenic 25.0%
! CAATGAAAAATACAATAGAG+TGG + chr5.4:66959404-66959423 MS.gene90615:CDS 25.0%
! CCAAAATGTATTAAGTATAC+TGG + chr5.4:66959797-66959816 MS.gene90615:intron 25.0%
! GCAATTAAATTGGATATGTT+TGG - chr5.4:66960165-66960184 None:intergenic 25.0%
! TAAAGAAAACTTACCATAGA+AGG - chr5.4:66959550-66959569 None:intergenic 25.0%
! TAAAGAACTTACTAGTACAT+CGG - chr5.4:66957665-66957684 None:intergenic 25.0%
! TGTAAAAAAAAAGAGGACAT+AGG + chr5.4:66958084-66958103 MS.gene90615:intron 25.0%
! TTTAATAATTCCTTGAATGC+AGG - chr5.4:66957792-66957811 None:intergenic 25.0%
!! AATTTTCATTCACATACACT+TGG + chr5.4:66959959-66959978 MS.gene90615:intron 25.0%
!! ACAATATCAAGATTTTCTAG+TGG + chr5.4:66959254-66959273 MS.gene90615:CDS 25.0%
!! AGTAAGTTCTTTATTTGTGT+TGG + chr5.4:66957672-66957691 MS.gene90615:intron 25.0%
!! CATTGATTGTGCAATTAAAT+TGG - chr5.4:66960175-66960194 None:intergenic 25.0%
!! CCAGTATACTTAATACATTT+TGG - chr5.4:66959800-66959819 None:intergenic 25.0%
!! GGAAAATATAGTAGTTTTCA+AGG - chr5.4:66959206-66959225 None:intergenic 25.0%
!! GTAAGTTCTTTATTTGTGTT+GGG + chr5.4:66957673-66957692 MS.gene90615:intron 25.0%
!! TTAATATGTTGGCATTGAAA+AGG - chr5.4:66958854-66958873 None:intergenic 25.0%
!!! ATAATTTGATTTTGGCCATA+TGG + chr5.4:66960304-66960323 MS.gene90615:intron 25.0%
!!! GGATGGTTTTTTATTTTTGA+AGG + chr5.4:66958951-66958970 MS.gene90615:intron 25.0%
!!! GTTCTCTCTATTTTTTTTTC+CGG + chr5.4:66957700-66957719 MS.gene90615:intron 25.0%
!!! GTTTTCCATTAATTTGTGTT+TGG - chr5.4:66957817-66957836 None:intergenic 25.0%
!!! TACTCCATTTCCTTTTTTTT+GGG + chr5.4:66958265-66958284 MS.gene90615:intron 25.0%
AAAAAAGGAAATGGAGTAGA+TGG - chr5.4:66958263-66958282 None:intergenic 30.0%
AAAGCCCAAACACAAATTAA+TGG + chr5.4:66957809-66957828 MS.gene90615:intron 30.0%
AAATCATCAATGGTATAAGC+AGG - chr5.4:66957589-66957608 None:intergenic 30.0%
AACATATACATATCCATGGA+TGG - chr5.4:66959923-66959942 None:intergenic 30.0%
AATTCACTCATTGAAACCTA+CGG + chr5.4:66958367-66958386 MS.gene90615:intron 30.0%
AATTTACTCTTGCACACAAA+TGG - chr5.4:66960280-66960299 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5.4:66958632-66958651 None:intergenic 30.0%
ACATTTGATAAGGAGATTGT+TGG - chr5.4:66959896-66959915 None:intergenic 30.0%
ACGTTATTCATGACAACTAA+TGG + chr5.4:66958426-66958445 MS.gene90615:intron 30.0%
AGGAAACATATACATATCCA+TGG - chr5.4:66959927-66959946 None:intergenic 30.0%
ATATATGCATATGCATAGCA+TGG + chr5.4:66957305-66957324 MS.gene90615:CDS 30.0%
ATCAAATGTTAATCCATCCA+TGG + chr5.4:66959907-66959926 MS.gene90615:intron 30.0%
ATTGCCCAAAAAAAAGGAAA+TGG - chr5.4:66958272-66958291 None:intergenic 30.0%
ATTTACTCTTGCACACAAAT+GGG - chr5.4:66960279-66960298 None:intergenic 30.0%
CATTTGTTCCTAAGCTTATT+AGG - chr5.4:66959179-66959198 None:intergenic 30.0%
GATATCATTGACAATCTCAT+AGG - chr5.4:66959514-66959533 None:intergenic 30.0%
GCAAGTCACAATGATAATTT+GGG - chr5.4:66957344-66957363 None:intergenic 30.0%
GCATTATACCTAATAAGCTT+AGG + chr5.4:66959168-66959187 MS.gene90615:CDS 30.0%
GGGTAGTATTAAATCGAAAA+TGG - chr5.4:66957736-66957755 None:intergenic 30.0%
GTAAAGAAACATTAGGAGAT+AGG - chr5.4:66958298-66958317 None:intergenic 30.0%
TAACAAATTGGTAGATAGAC+AGG - chr5.4:66958320-66958339 None:intergenic 30.0%
TAGACAGGTAAAGAAACATT+AGG - chr5.4:66958305-66958324 None:intergenic 30.0%
TCCTTTCTTGTACTTTCTAT+AGG - chr5.4:66958026-66958045 None:intergenic 30.0%
TGATATCATATTCTCCAACT+TGG - chr5.4:66959445-66959464 None:intergenic 30.0%
TGCAAGTCACAATGATAATT+TGG - chr5.4:66957345-66957364 None:intergenic 30.0%
TTTGCAATTTAATGCCAAGT+TGG + chr5.4:66959428-66959447 MS.gene90615:CDS 30.0%
! ATAGAAGACACCTTTTATGA+AGG + chr5.4:66958564-66958583 MS.gene90615:intron 30.0%
! GCAAGTTTGTTTAACTAAGA+AGG + chr5.4:66958394-66958413 MS.gene90615:intron 30.0%
! TGTATTTTTCATTGCAAGCA+TGG - chr5.4:66959398-66959417 None:intergenic 30.0%
!! ACAAATGGGCTTTAAATCAA+AGG - chr5.4:66960265-66960284 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5.4:66958626-66958645 MS.gene90615:intron 30.0%
!! ATAACTGGTCTTATTCCTAT+GGG + chr5.4:66959333-66959352 MS.gene90615:CDS 30.0%
!! GGATGGATTAACATTTGATA+AGG - chr5.4:66959906-66959925 None:intergenic 30.0%
!! TTTTTGAAGGAATTTGTGGA+TGG + chr5.4:66958964-66958983 MS.gene90615:intron 30.0%
!!! ATGTCCTATTTTTAAGCACA+TGG + chr5.4:66958053-66958072 MS.gene90615:intron 30.0%
!!! CTACTCCATTTCCTTTTTTT+TGG + chr5.4:66958264-66958283 MS.gene90615:intron 30.0%
!!! TATTTTGGAACATGACCATA+TGG - chr5.4:66960322-66960341 None:intergenic 30.0%
!!! TGAAAATTTTTTCGTTTGGG+AGG - chr5.4:66959947-66959966 None:intergenic 30.0%
!!! TGTCCTATTTTTAAGCACAT+GGG + chr5.4:66958054-66958073 MS.gene90615:intron 30.0%
AACTCTATTTCCTTCCATAG+TGG - chr5.4:66959078-66959097 None:intergenic 35.0%
AAGAAACATTAGGAGATAGG+TGG - chr5.4:66958295-66958314 None:intergenic 35.0%
ACCAGTGACAAAATCATCAA+TGG - chr5.4:66957599-66957618 None:intergenic 35.0%
ACTTGACAAAGGAACCATAT+TGG - chr5.4:66958219-66958238 None:intergenic 35.0%
AGATGATATCCAGTAGATCA+GGG + chr5.4:66960233-66960252 MS.gene90615:intron 35.0%
ATATTGCAGAGGATTTCGTT+AGG + chr5.4:66959277-66959296 MS.gene90615:CDS 35.0%
ATCACCTTTGTCATGACTAA+AGG - chr5.4:66958459-66958478 None:intergenic 35.0%
ATTACAAGACCTTCCTTCTA+TGG + chr5.4:66959534-66959553 MS.gene90615:CDS 35.0%
CATAGGAATAAGACCAGTTA+TGG - chr5.4:66959334-66959353 None:intergenic 35.0%
CTACCCATGTGCTTAAAAAT+AGG - chr5.4:66958060-66958079 None:intergenic 35.0%
GAAAACTTACCATAGAAGGA+AGG - chr5.4:66959546-66959565 None:intergenic 35.0%
GCTAGGAAATTATCCATAAC+TGG + chr5.4:66959318-66959337 MS.gene90615:CDS 35.0%
GGCAAATGAAATCATAAGTG+AGG + chr5.4:66959146-66959165 MS.gene90615:CDS 35.0%
GTACCAGCAGTAATTGTATT+TGG + chr5.4:66957379-66957398 MS.gene90615:CDS 35.0%
GTTAGGAAATTACACTCACT+TGG + chr5.4:66959294-66959313 MS.gene90615:CDS 35.0%
TCACCAAATACAATTACTGC+TGG - chr5.4:66957385-66957404 None:intergenic 35.0%
TCATATAGTGCCTGAAATTC+CGG + chr5.4:66960207-66960226 MS.gene90615:intron 35.0%
TGGATATGTTTGGTACCATA+AGG - chr5.4:66960155-66960174 None:intergenic 35.0%
TGGTCAAATTTGAGAGTGAA+AGG - chr5.4:66958243-66958262 None:intergenic 35.0%
TGTCATATCACATACTTCGA+TGG - chr5.4:66958827-66958846 None:intergenic 35.0%
TGTTAAAAGACACCACCAAA+GGG + chr5.4:66958704-66958723 MS.gene90615:intron 35.0%
TTGTTAAAAGACACCACCAA+AGG + chr5.4:66958703-66958722 MS.gene90615:intron 35.0%
! GCCTATAGAAAGTACAAGAA+AGG + chr5.4:66958022-66958041 MS.gene90615:intron 35.0%
! TGAAATGAAGTCGTCTTGTT+GGG - chr5.4:66959227-66959246 None:intergenic 35.0%
! TGCCTTCTTTTTACCAACAT+GGG - chr5.4:66959130-66959149 None:intergenic 35.0%
! TGTATTTGGTGATTCTTCTG+TGG + chr5.4:66957393-66957412 MS.gene90615:CDS 35.0%
! TTGCCTTCTTTTTACCAACA+TGG - chr5.4:66959131-66959150 None:intergenic 35.0%
! TTTTGTTACAAGTCACCCTT+TGG - chr5.4:66958722-66958741 None:intergenic 35.0%
!! ACCATTGATGATTTTGTCAC+TGG + chr5.4:66957595-66957614 MS.gene90615:CDS 35.0%
!! CATAACTGGTCTTATTCCTA+TGG + chr5.4:66959332-66959351 MS.gene90615:CDS 35.0%
!! TTTTCTAGTGGATATTGCAG+AGG + chr5.4:66959266-66959285 MS.gene90615:CDS 35.0%
ACCTTTGTCATGACTAAAGG+TGG - chr5.4:66958456-66958475 None:intergenic 40.0%
ATGTTCATCTTGTTGGGTCA+TGG + chr5.4:66959711-66959730 MS.gene90615:intron 40.0%
CACAGAATGTGATACCACTA+TGG + chr5.4:66959061-66959080 MS.gene90615:intron 40.0%
CGAAAATGGACACATTGTAC+CGG - chr5.4:66957722-66957741 None:intergenic 40.0%
GAAAAATTGAGAGCCCATGT+TGG + chr5.4:66959114-66959133 MS.gene90615:CDS 40.0%
GAATGTGATACCACTATGGA+AGG + chr5.4:66959065-66959084 MS.gene90615:intron 40.0%
GAGATGATATCCAGTAGATC+AGG + chr5.4:66960232-66960251 MS.gene90615:intron 40.0%
GAGTGAAAGGAACTTGACAA+AGG - chr5.4:66958230-66958249 None:intergenic 40.0%
GATGATATCCAGTAGATCAG+GGG + chr5.4:66960234-66960253 MS.gene90615:intron 40.0%
GTGAAATGAAGTCGTCTTGT+TGG - chr5.4:66959228-66959247 None:intergenic 40.0%
GTTTGGTACCATAAGGATGT+TGG - chr5.4:66960148-66960167 None:intergenic 40.0%
TAAGGAGCTACCACAATTGA+AGG + chr5.4:66959473-66959492 MS.gene90615:CDS 40.0%
TCAGTCATTACCTGCATTCA+AGG + chr5.4:66957779-66957798 MS.gene90615:intron 40.0%
TGTTCATCTTGTTGGGTCAT+GGG + chr5.4:66959712-66959731 MS.gene90615:intron 40.0%
TTACACGTCCAACATCCTTA+TGG + chr5.4:66960137-66960156 MS.gene90615:intron 40.0%
! AAACAAACTTGCTTGTCCGT+AGG - chr5.4:66958386-66958405 None:intergenic 40.0%
! ACCACAATTGAAGGCTTTGT+CGG + chr5.4:66959482-66959501 MS.gene90615:CDS 40.0%
! AGCCCATGTTGGTAAAAAGA+AGG + chr5.4:66959125-66959144 MS.gene90615:CDS 40.0%
! CATGGGCTCTCAATTTTTCT+TGG - chr5.4:66959113-66959132 None:intergenic 40.0%
!! AATTACACTCACTTGGTGCT+AGG + chr5.4:66959301-66959320 MS.gene90615:CDS 40.0%
!! AGGTGGATTGCCCAAAAAAA+AGG - chr5.4:66958278-66958297 None:intergenic 40.0%
AAAGCCTCGGCAATAAAGTC+CGG - chr5.4:66957532-66957551 None:intergenic 45.0%
ATATCCAGTAGATCAGGGGT+AGG + chr5.4:66960238-66960257 MS.gene90615:intron 45.0%
ATCATATCCAGTTCCAGCAG+AGG - chr5.4:66957632-66957651 None:intergenic 45.0%
ATCATCTCTGCCGGAATTTC+AGG - chr5.4:66960220-66960239 None:intergenic 45.0%
CTACTGGATATCATCTCTGC+CGG - chr5.4:66960229-66960248 None:intergenic 45.0%
GACTTTATTGCCGAGGCTTT+CGG + chr5.4:66957532-66957551 MS.gene90615:CDS 45.0%
GCCACCTTTAGTCATGACAA+AGG + chr5.4:66958452-66958471 MS.gene90615:intron 45.0%
GGTGATTCTTCTGTGGATTC+TGG + chr5.4:66957400-66957419 MS.gene90615:CDS 45.0%
GTCTCTCTCAACACTACACA+TGG - chr5.4:66958483-66958502 None:intergenic 45.0%
GTGGATGGTTGTTGCTAAAG+TGG + chr5.4:66958979-66958998 MS.gene90615:intron 45.0%
GTTCATCTTGTTGGGTCATG+GGG + chr5.4:66959713-66959732 MS.gene90615:intron 45.0%
TAAGCAGGATCCAAGTATGC+CGG - chr5.4:66957574-66957593 None:intergenic 45.0%
TCTAATGGGAGACAACCCAT+AGG - chr5.4:66959351-66959370 None:intergenic 45.0%
TGTTACAAGTCACCCTTTGG+TGG - chr5.4:66958719-66958738 None:intergenic 45.0%
!! GATATATATATATATATATA+TGG + chr5.4:66958535-66958554 MS.gene90615:intron 5.0%
!! TAGTTAAAAATATAAATAAA+GGG + chr5.4:66957998-66958017 MS.gene90615:intron 5.0%
!!! AAAAAATAATAATTCTAAAA+AGG + chr5.4:66960475-66960494 MS.gene90615:intron 5.0%
ACGACCGTTACAAAACCGTC+CGG - chr5.4:66957503-66957522 None:intergenic 50.0%
ATCTTGTTGGGTCATGGGGA+TGG + chr5.4:66959717-66959736 MS.gene90615:intron 50.0%
CGGCGTTAAGCGCAATATAC+CGG + chr5.4:66957552-66957571 MS.gene90615:CDS 50.0%
GCCGACAAAGCCTTCAATTG+TGG - chr5.4:66959486-66959505 None:intergenic 50.0%
GCGCAATATACCGGCATACT+TGG + chr5.4:66957561-66957580 MS.gene90615:CDS 50.0%
GTGTTGCACTTCTCTTTCGC+TGG + chr5.4:66959628-66959647 MS.gene90615:intron 50.0%
TCTTGTTGGGTCATGGGGAT+GGG + chr5.4:66959718-66959737 MS.gene90615:intron 50.0%
TTGTAACGGTCGTACTCCAC+CGG + chr5.4:66957510-66957529 MS.gene90615:CDS 50.0%
ACCGTTACAAAACCGTCCGG+TGG - chr5.4:66957500-66957519 None:intergenic 55.0%
AGGTCCTACCCCTGATCTAC+TGG - chr5.4:66960245-66960264 None:intergenic 55.0%
CCGTTACAAAACCGTCCGGT+GGG - chr5.4:66957499-66957518 None:intergenic 55.0%
CGTTACAAAACCGTCCGGTG+GGG - chr5.4:66957498-66957517 None:intergenic 55.0%
CTTGTTGGGTCATGGGGATG+GGG + chr5.4:66959719-66959738 MS.gene90615:intron 55.0%
GGTGTTTGCTTTGCCTCTGC+TGG + chr5.4:66957616-66957635 MS.gene90615:CDS 55.0%
TCCACCGGACTTTATTGCCG+AGG + chr5.4:66957525-66957544 MS.gene90615:CDS 55.0%
TGCTTTGCCTCTGCTGGAAC+TGG + chr5.4:66957622-66957641 MS.gene90615:CDS 55.0%
!! CCCACCGGACGGTTTTGTAA+CGG + chr5.4:66957496-66957515 MS.gene90615:CDS 55.0%
CCTTACGGCCGTGACTTCGA+AGG + chr5.4:66957466-66957485 MS.gene90615:CDS 60.0%
CCTTCGAAGTCACGGCCGTA+AGG - chr5.4:66957469-66957488 None:intergenic 60.0%
GCCTCGGCAATAAAGTCCGG+TGG - chr5.4:66957529-66957548 None:intergenic 60.0%
GCGCTTAACGCCGAAAGCCT+CGG - chr5.4:66957545-66957564 None:intergenic 60.0%
GGGGATGGGGTCATCACACA+TGG + chr5.4:66959732-66959751 MS.gene90615:intron 60.0%
TACAAAACCGTCCGGTGGGG+CGG - chr5.4:66957495-66957514 None:intergenic 60.0%
TACGGCCGTGACTTCGAAGG+TGG + chr5.4:66957469-66957488 MS.gene90615:CDS 60.0%
GGCGGCCACCTTCGAAGTCA+CGG - chr5.4:66957477-66957496 None:intergenic 65.0%
TTCGAAGGTGGCCGCCCCAC+CGG + chr5.4:66957481-66957500 MS.gene90615:CDS 70.0%
AAGGTGGCCGCCCCACCGGA+CGG + chr5.4:66957485-66957504 MS.gene90615:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 66957298 66960557 66957298 ID=MS.gene90615
chr5.4 mRNA 66957298 66960557 66957298 ID=MS.gene90615.t1;Parent=MS.gene90615
chr5.4 exon 66957298 66957672 66957298 ID=MS.gene90615.t1.exon1;Parent=MS.gene90615.t1
chr5.4 CDS 66957298 66957672 66957298 ID=cds.MS.gene90615.t1;Parent=MS.gene90615.t1
chr5.4 exon 66959066 66959555 66959066 ID=MS.gene90615.t1.exon2;Parent=MS.gene90615.t1
chr5.4 CDS 66959066 66959555 66959066 ID=cds.MS.gene90615.t1;Parent=MS.gene90615.t1
chr5.4 exon 66960553 66960557 66960553 ID=MS.gene90615.t1.exon3;Parent=MS.gene90615.t1
chr5.4 CDS 66960553 66960557 66960553 ID=cds.MS.gene90615.t1;Parent=MS.gene90615.t1
Gene Sequence

>MS.gene90615

ATGAAGCATATATGCATATGCATAGCATGGTTAATATTGATAACCCAAATTATCATTGTGACTTGCAAGACTAGAAATCATGTACCAGCAGTAATTGTATTTGGTGATTCTTCTGTGGATTCTGGAAACAATAATAAGATAGCTACACTTCTCAAGAGTAATTTTAAACCTTACGGCCGTGACTTCGAAGGTGGCCGCCCCACCGGACGGTTTTGTAACGGTCGTACTCCACCGGACTTTATTGCCGAGGCTTTCGGCGTTAAGCGCAATATACCGGCATACTTGGATCCTGCTTATACCATTGATGATTTTGTCACTGGTGTTTGCTTTGCCTCTGCTGGAACTGGATATGATAATGCAACTTCCGATGTACTAGTAAGTTCTTTATTTGTGTTGGGTTGTGTTCTCTCTATTTTTTTTTCCGGTACAATGTGTCCATTTTCGATTTAATACTACCCTTAAATCAAATTTCACATTGTCATCAGTCATTACCTGCATTCAAGGAATTATTAAAGCCCAAACACAAATTAATGGAAAACTAAAAAAAAAGTTGATAACAATATCAAATTAATTGTCAATTGACATTGTTTTACAAGTTTATCCTTATTAAGATTTATGTTTTACTCATAATATATTTATTACAAATTGCATGAAAATATATAACTTAATTAGAGATATGTTTGTAACGAAATAACTTATGTAGTTAAAAATATAAATAAAGGGAGCCTATAGAAAGTACAAGAAAGGATATAAATATGTCCTATTTTTAAGCACATGGGTAGTAATTGTAAAAAAAAAGAGGACATAGGTAGTAGTATTTTTTTTTTTTTTTACAAGATAAATTTGGTTTCATAATATTATGTCCTATTTGGTTTGACACAATTATTAGCATTTTGATTTTGAAACTCAATAAAATATCCAATATGGTTCCTTTGTCAAGTTCCTTTCACTCTCAAATTTGACCATCTACTCCATTTCCTTTTTTTTGGGCAATCCACCTATCTCCTAATGTTTCTTTACCTGTCTATCTACCAATTTGTTAATATCTTTCTATCATATATATGATGAGAATTCACTCATTGAAACCTACGGACAAGCAAGTTTGTTTAACTAAGAAGGAAATTTAAGACGTTATTCATGACAACTAATGGAGTGCCACCTTTAGTCATGACAAAGGTGATACCATGTGTAGTGTTGAGAGAGACAAAGTTATAGAAAAGTATTATTATGGTTAAAAGATATATATATATATATATATGGGTTATGATAGAAGACACCTTTTATGAAGGTGTCTTTTATCAAATTACTCTATGAGCATTTGCGAAAAGACACCAACTTACTTTTATGAAGGTGTCTTTTAGCAAAATTATAACTAAAAAGTGAAAATCACATCTTAAGGTGTGACTTGTTAAAAGACACCACCAAAGGGTGACTTGTAACAAAACCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGCTGATTTCTAACCATCGAAGTATGTGATATGACAATTTCCTTTTCAATGCCAACATATTAAAATTAGCGTAAGTTAATATTTTTTTGTTTCAAATATAATATAATTTAAAAAAAATATTTCTCTTTTATTTTAATTGTGGATGGTTTTTTATTTTTGAAGGAATTTGTGGATGGTTGTTGCTAAAGTGGTGACTTATTTTATTTTCATAATAAACTAATTAATTAATTAACATTGGATGTCAACTTTTCACAGAATGTGATACCACTATGGAAGGAAATAGAGTTCTTCAAAGAATACCAAGAAAAATTGAGAGCCCATGTTGGTAAAAAGAAGGCAAATGAAATCATAAGTGAGGCATTATACCTAATAAGCTTAGGAACAAATGATTTCCTTGAAAACTACTATATTTTCCCAACAAGACGACTTCATTTCACCGTATCACAATATCAAGATTTTCTAGTGGATATTGCAGAGGATTTCGTTAGGAAATTACACTCACTTGGTGCTAGGAAATTATCCATAACTGGTCTTATTCCTATGGGTTGTCTCCCATTAGAAAGAGCTATAAATATTTTTGGTGACCATGCTTGCAATGAAAAATACAATAGAGTGGCTTTGCAATTTAATGCCAAGTTGGAGAATATGATATCAAAGCTAAATAAGGAGCTACCACAATTGAAGGCTTTGTCGGCAAATGCCTATGAGATTGTCAATGATATCATTACAAGACCTTCCTTCTATGGTAAGTTTTCTTTATTTGTTCTCACAACATATCTATATATCTTATGTGATTCATCTTATTATGGTATTTTATGTGTTGCACTTCTCTTTCGCTGGCTATGACTATAACACAAAATATACAAACACACACATAGGTTCAAAAATAAAATAAAATTGATGTTCATCTTGTTGGGTCATGGGGATGGGGTCATCACACATGGTTTTAAACAACTACATAAGTGAAATTGATACCATATTTTCATCCAAAATGTATTAAGTATACTGGTCATGTCACTTCTATGTTGTTCAACATCCACTTTTTCTTTTAACATAAGACTCTTATTCACACTTAATATATACCAACAATCTCCTTATCAAATGTTAATCCATCCATGGATATGTATATGTTTCCTCCCAAACGAAAAAATTTTCATTCACATACACTTGGATACAATTATGTAAAAGTAAGTTGAACTAAATTAAAATCAATTCTAGAATCAAAATCTTATCTTCAAGTAGAATCAATTTTAAAGACAAAATGATCAATTATACGCGATAGTATTCATAATCAATTTTCTTTTAGTACAATATTCAAAATCAATTTTACACGTCCAACATCCTTATGGTACCAAACATATCCAATTTAATTGCACAATCAATGTAGCACAGCTAATCATATAGTGCCTGAAATTCCGGCAGAGATGATATCCAGTAGATCAGGGGTAGGACCTTTGATTTAAAGCCCATTTGTGTGCAAGAGTAAATTTCACATAATTTGATTTTGGCCATATGGTCATGTTCCAAAATAAACGTTCTTTTTTTACAAAAATAAACTGTAGAAAATTTAACTTGCTGAATATTTACTTTTTACATCTTTTTTATTTCAAATTTCTTGATATTCTTATACTGTGTAATATAAAATTCAAAAAGGGTTCTAGACTAAAAAATAATAATTCTAAAAAGGTTACATTTTAAACAATTAAAATGCTTCATTTGATTTTCCTTTGTTTTTTTAATAGAGTAA
Protein sequence

>MS.gene90615.t1

MKHICICIAWLILITQIIIVTCKTRNHVPAVIVFGDSSVDSGNNNKIATLLKSNFKPYGRDFEGGRPTGRFCNGRTPPDFIAEAFGVKRNIPAYLDPAYTIDDFVTGVCFASAGTGYDNATSDVLNVIPLWKEIEFFKEYQEKLRAHVGKKKANEIISEALYLISLGTNDFLENYYIFPTRRLHFTVSQYQDFLVDIAEDFVRKLHSLGARKLSITGLIPMGCLPLERAINIFGDHACNEKYNRVALQFNAKLENMISKLNKELPQLKALSANAYEIVNDIITRPSFYE