Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90662.t1 | XP_024640086.1 | 96.1 | 760 | 30 | 0 | 42 | 801 | 41 | 800 | 0.00E+00 | 1375.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90662.t1 | P73625 | 31.4 | 784 | 429 | 16 | 44 | 801 | 8 | 708 | 1.2e-77 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90662.t1 | G7K652 | 95.9 | 760 | 30 | 1 | 42 | 801 | 41 | 799 | 0.0e+00 | 1369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052870 | MS.gene90662 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene90662 | 0.808148 | 3.57E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene90662 | 0.80744 | 5.05E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90662.t1 | MTR_5g068600 | 95.262 | 802 | 34 | 3 | 1 | 801 | 1 | 799 | 0.0 | 1542 |
| MS.gene90662.t1 | MTR_5g068600 | 95.714 | 700 | 29 | 1 | 102 | 801 | 1 | 699 | 0.0 | 1363 |
| MS.gene90662.t1 | MTR_4g088920 | 30.855 | 807 | 461 | 24 | 44 | 801 | 33 | 791 | 4.17e-83 | 285 |
| MS.gene90662.t1 | MTR_1g045670 | 32.308 | 195 | 122 | 4 | 432 | 621 | 764 | 953 | 5.77e-21 | 99.4 |
| MS.gene90662.t1 | MTR_7g109470 | 29.963 | 267 | 151 | 10 | 420 | 653 | 1013 | 1276 | 1.43e-17 | 88.6 |
| MS.gene90662.t1 | MTR_4g111945 | 26.159 | 302 | 193 | 7 | 420 | 707 | 649 | 934 | 2.82e-16 | 84.0 |
| MS.gene90662.t1 | MTR_1g100683 | 27.313 | 227 | 132 | 5 | 434 | 631 | 799 | 1021 | 8.71e-16 | 82.4 |
| MS.gene90662.t1 | MTR_1g100683 | 27.313 | 227 | 132 | 5 | 434 | 631 | 799 | 1021 | 8.71e-16 | 82.4 |
| MS.gene90662.t1 | MTR_6g086270 | 27.854 | 219 | 141 | 5 | 411 | 613 | 870 | 1087 | 2.34e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90662.t1 | AT5G54090 | 56.159 | 755 | 317 | 4 | 48 | 798 | 50 | 794 | 0.0 | 821 |
| MS.gene90662.t1 | AT1G65070 | 30.633 | 790 | 443 | 27 | 44 | 801 | 45 | 761 | 1.31e-70 | 249 |
| MS.gene90662.t1 | AT1G65070 | 30.633 | 790 | 443 | 26 | 44 | 801 | 45 | 761 | 1.79e-70 | 249 |
| MS.gene90662.t1 | AT1G65070 | 30.633 | 790 | 443 | 26 | 44 | 801 | 45 | 761 | 1.86e-70 | 249 |
| MS.gene90662.t1 | AT1G65070 | 32.584 | 623 | 346 | 18 | 44 | 650 | 45 | 609 | 1.56e-68 | 239 |
| MS.gene90662.t1 | AT3G24320 | 34.583 | 240 | 138 | 5 | 421 | 642 | 498 | 736 | 2.10e-23 | 107 |
| MS.gene90662.t1 | AT3G24320 | 34.583 | 240 | 138 | 5 | 421 | 642 | 743 | 981 | 3.06e-23 | 106 |
| MS.gene90662.t1 | AT4G25540 | 28.500 | 200 | 131 | 2 | 434 | 622 | 814 | 1012 | 1.95e-16 | 84.7 |
| MS.gene90662.t1 | AT3G24495 | 29.493 | 217 | 124 | 6 | 419 | 611 | 827 | 1038 | 4.84e-16 | 83.6 |
| MS.gene90662.t1 | AT3G18524 | 28.641 | 206 | 134 | 3 | 420 | 613 | 648 | 852 | 7.42e-16 | 82.8 |
| MS.gene90662.t1 | AT4G02070 | 28.511 | 235 | 147 | 6 | 427 | 645 | 1070 | 1299 | 5.19e-15 | 80.1 |
| MS.gene90662.t1 | AT4G02070 | 28.511 | 235 | 147 | 6 | 427 | 645 | 1073 | 1302 | 5.28e-15 | 80.1 |
| MS.gene90662.t1 | AT4G17380 | 29.534 | 193 | 127 | 5 | 425 | 612 | 541 | 729 | 2.81e-13 | 74.3 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAAGTTGTAACCTTTC+TGG | 0.081692 | 5.2:-58211470 | None:intergenic |
| TCGCTGCAACTCATCATTTA+AGG | 0.127126 | 5.2:-58211398 | None:intergenic |
| GTATTGACTACCTGTATTTC+AGG | 0.165492 | 5.2:-58220334 | None:intergenic |
| TTTCATATTATGCAGATTAA+TGG | 0.202732 | 5.2:+58212321 | MS.gene90662:intron |
| CTTCAGTAATAGTTTGTTAA+TGG | 0.218917 | 5.2:-58208349 | None:intergenic |
| TGTTTAGGTACAACAATTAA+TGG | 0.219118 | 5.2:+58211042 | MS.gene90662:intron |
| TTTCTTCGTAAGTTTGATTC+TGG | 0.228833 | 5.2:-58209270 | None:intergenic |
| CTATGAGGCAAATGCTGTTT+TGG | 0.252961 | 5.2:+58209529 | MS.gene90662:CDS |
| TCAGAGTGCTGACACTTTGC+AGG | 0.261548 | 5.2:+58209559 | MS.gene90662:CDS |
| TGATACACGAGAGCTCTTAA+TGG | 0.276229 | 5.2:-58223442 | None:intergenic |
| CCTATCAGGAAGAAATATAT+TGG | 0.282927 | 5.2:-58212382 | None:intergenic |
| TGAACTAATATTTCTCCTTT+TGG | 0.285242 | 5.2:-58223979 | None:intergenic |
| TTCCTTTGCCACCACTTCCT+TGG | 0.285744 | 5.2:+58208491 | MS.gene90662:CDS |
| TCCTTTGCCACCACTTCCTT+GGG | 0.308516 | 5.2:+58208492 | MS.gene90662:CDS |
| TTAAATTTGCCCTATGGCTC+TGG | 0.312716 | 5.2:-58212518 | None:intergenic |
| AGCCAACTTACAAGGTTCTA+TGG | 0.319033 | 5.2:+58221090 | MS.gene90662:CDS |
| GCTACCTATGGTCTTTCATT+TGG | 0.321976 | 5.2:+58212348 | MS.gene90662:CDS |
| TGGTCATATTGATGCTATAA+TGG | 0.326735 | 5.2:+58209363 | MS.gene90662:CDS |
| TTCAGTAATAGTTTGTTAAT+GGG | 0.328978 | 5.2:-58208348 | None:intergenic |
| AATGTAGGTAATTACTGATA+TGG | 0.339126 | 5.2:+58222550 | MS.gene90662:intron |
| GATTCTGCTCGGAAGTTATA+CGG | 0.339322 | 5.2:+58222393 | MS.gene90662:CDS |
| ATGTTCAGCGATCTTCCTTC+TGG | 0.344029 | 5.2:-58223292 | None:intergenic |
| CTATGGCTCTGGAGCAATAA+AGG | 0.344253 | 5.2:-58212507 | None:intergenic |
| TGCACAAACATGGCTCTTGC+AGG | 0.344470 | 5.2:+58209332 | MS.gene90662:CDS |
| CTCATAGCCAGTTACCAGTA+TGG | 0.353942 | 5.2:-58209513 | None:intergenic |
| CTGAATCTGTGCAAATTCCT+TGG | 0.354114 | 5.2:+58219676 | MS.gene90662:CDS |
| AATGGCTTTGCCGTGCTGTA+AGG | 0.358465 | 5.2:-58223424 | None:intergenic |
| GTGTATCTTACAAGAATTGA+TGG | 0.362208 | 5.2:-58211094 | None:intergenic |
| TTAATTACCACTTCTGTAAG+AGG | 0.365219 | 5.2:-58209635 | None:intergenic |
| CAAAGTGTCACTCCTTGTTA+AGG | 0.366372 | 5.2:-58212427 | None:intergenic |
| TGGTTGCCAGGTTGCTGCAC+TGG | 0.368335 | 5.2:+58217987 | MS.gene90662:intron |
| CCAATATATTTCTTCCTGAT+AGG | 0.373935 | 5.2:+58212382 | MS.gene90662:CDS |
| ACCTATGGTCTTTCATTTGG+AGG | 0.384153 | 5.2:+58212351 | MS.gene90662:CDS |
| TTCTTCGTAAGTTTGATTCT+GGG | 0.384225 | 5.2:-58209269 | None:intergenic |
| GTTATAACTGGCCCTAATAC+TGG | 0.389226 | 5.2:+58218072 | MS.gene90662:CDS |
| CTTTATTATCTGCTGCAGTA+TGG | 0.389255 | 5.2:-58223479 | None:intergenic |
| ATGGACCGTTACCCAACAAT+AGG | 0.389668 | 5.2:+58212451 | MS.gene90662:CDS |
| AGCACTAGGAATGTCATTAT+TGG | 0.390539 | 5.2:+58220247 | MS.gene90662:CDS |
| GTAGAAGAGCTATTCCTATC+AGG | 0.394308 | 5.2:-58212396 | None:intergenic |
| TGGTGCATAAGAACTGATTC+TGG | 0.396015 | 5.2:+58211211 | MS.gene90662:CDS |
| CAATATCCATTCCCTATTGT+TGG | 0.402299 | 5.2:-58212463 | None:intergenic |
| CAATAAAGGATGATAAGCTT+TGG | 0.402841 | 5.2:-58212493 | None:intergenic |
| ATGGGACAAACTCTCCGATT+TGG | 0.404765 | 5.2:+58208464 | MS.gene90662:CDS |
| CGCTGCAACTCATCATTTAA+GGG | 0.411337 | 5.2:-58211397 | None:intergenic |
| AGTACAAGTGCTTGAGAGAA+AGG | 0.411413 | 5.2:+58210594 | MS.gene90662:CDS |
| TGAAAAGATACTAGACGGTT+TGG | 0.411744 | 5.2:+58211787 | MS.gene90662:CDS |
| ACTCGGGTTATAGTTATAAC+TGG | 0.413362 | 5.2:+58218060 | MS.gene90662:CDS |
| TAGACTATCGTGAAGTTCTC+TGG | 0.417492 | 5.2:-58223262 | None:intergenic |
| TATTGACTACCTGTATTTCA+GGG | 0.417934 | 5.2:-58220333 | None:intergenic |
| AACTGGTACTGGCTGTGGTT+GGG | 0.420362 | 5.2:-58218016 | None:intergenic |
| AATAAAGGATGATAAGCTTT+GGG | 0.422522 | 5.2:-58212492 | None:intergenic |
| CTATCAGGAAGAAATATATT+GGG | 0.429322 | 5.2:-58212381 | None:intergenic |
| TATACTGTATCACCAACCTT+AGG | 0.430021 | 5.2:-58223910 | None:intergenic |
| GTTGCAGCGAGCAAGAAGTT+TGG | 0.436216 | 5.2:+58211411 | MS.gene90662:CDS |
| AGGAGAACCATACTGGTAAC+TGG | 0.436331 | 5.2:+58209506 | MS.gene90662:CDS |
| AATATCCATTCCCTATTGTT+GGG | 0.437155 | 5.2:-58212462 | None:intergenic |
| GTGCATTTCAACTGCAGCAT+TGG | 0.437777 | 5.2:-58209314 | None:intergenic |
| TTAAGGGTCTATTGTTGTCC+AGG | 0.437835 | 5.2:+58211248 | MS.gene90662:CDS |
| CCATTGTTCACAAGAAGGTC+AGG | 0.438561 | 5.2:+58223376 | MS.gene90662:CDS |
| CAGTCGCTGTCTACATTCTC+TGG | 0.442990 | 5.2:+58219744 | MS.gene90662:CDS |
| CAGGAAGTGAATAATATTGA+TGG | 0.443462 | 5.2:+58211184 | MS.gene90662:intron |
| CCTTCTTTAAATTTGCCCTA+TGG | 0.444660 | 5.2:-58212524 | None:intergenic |
| AACTGAAAACCCTGAAATAC+AGG | 0.447137 | 5.2:+58220324 | MS.gene90662:CDS |
| TGCAATTGTTAGGTTGGAGC+AGG | 0.449743 | 5.2:+58220203 | MS.gene90662:intron |
| CTTTATTGCTCCAGAGCCAT+AGG | 0.451572 | 5.2:+58212508 | MS.gene90662:CDS |
| ACAAGGAGTGACACTTTGAA+TGG | 0.452630 | 5.2:+58212432 | MS.gene90662:CDS |
| ACAGTATACGTCTCTTCCCT+TGG | 0.454744 | 5.2:+58223925 | MS.gene90662:CDS |
| AAGTGCAAGGAGAACCATAC+TGG | 0.455808 | 5.2:+58209499 | MS.gene90662:CDS |
| TCTGGACATTGCTGCAGCCT+TGG | 0.459298 | 5.2:-58223352 | None:intergenic |
| GCCAACTTACAAGGTTCTAT+GGG | 0.462665 | 5.2:+58221091 | MS.gene90662:CDS |
| TGTAGGATTGGCTGCTATGA+TGG | 0.462827 | 5.2:+58218119 | MS.gene90662:CDS |
| CAATTAAGCAAGACAAAGAT+TGG | 0.463606 | 5.2:+58209597 | MS.gene90662:CDS |
| CTTCTTGTGAACAATGGATC+TGG | 0.464028 | 5.2:-58223370 | None:intergenic |
| GGCTCTTGCAGGTTGCACTT+TGG | 0.464703 | 5.2:+58209343 | MS.gene90662:CDS |
| TCTGAGGCTGTCGTGATGAA+TGG | 0.467093 | 5.2:-58208433 | None:intergenic |
| CCCCATAGAACCTTGTAAGT+TGG | 0.474515 | 5.2:-58221092 | None:intergenic |
| AAATTTGACAAATCATCAAC+AGG | 0.475285 | 5.2:+58223540 | MS.gene90662:CDS |
| ATACTGTATCACCAACCTTA+GGG | 0.487794 | 5.2:-58223909 | None:intergenic |
| CCTAGTGCTGCTCCTTCAAG+TGG | 0.491098 | 5.2:-58220233 | None:intergenic |
| TTTGGTAGTAGTTCAGGAGT+TGG | 0.494704 | 5.2:+58211346 | MS.gene90662:intron |
| TTATGTTATGAATACCTTGA+GGG | 0.497719 | 5.2:-58208523 | None:intergenic |
| ATCAATATAGCCGAGAGACT+TGG | 0.499173 | 5.2:+58222351 | MS.gene90662:CDS |
| TGTAGACAGCGACTGTGATA+AGG | 0.501234 | 5.2:-58219736 | None:intergenic |
| CATACTGGTAACTGGCTATG+AGG | 0.501449 | 5.2:+58209514 | MS.gene90662:CDS |
| CAACTGGTACTGGCTGTGGT+TGG | 0.502088 | 5.2:-58218017 | None:intergenic |
| CATCAGATAATGATCTGCTT+CGG | 0.502816 | 5.2:-58222606 | None:intergenic |
| GGCCTTTGAAAATGCATGTA+TGG | 0.506536 | 5.2:+58221046 | MS.gene90662:CDS |
| AGCAAGAAGTTTGGTAGCAA+AGG | 0.508154 | 5.2:+58211420 | MS.gene90662:CDS |
| ATTAATGGCCGTGCTACCTA+TGG | 0.510110 | 5.2:+58212336 | MS.gene90662:CDS |
| CCATAGGGCAAATTTAAAGA+AGG | 0.511275 | 5.2:+58212524 | MS.gene90662:CDS |
| TGGACCGTTACCCAACAATA+GGG | 0.512063 | 5.2:+58212452 | MS.gene90662:CDS |
| TTTGGTATCTAATAAAACTC+GGG | 0.513015 | 5.2:+58218044 | MS.gene90662:CDS |
| AAGGTTCTATGGGGCATACC+TGG | 0.513653 | 5.2:+58221101 | MS.gene90662:CDS |
| AAATTTAAAGAAGGTTAAAG+AGG | 0.513673 | 5.2:+58212533 | MS.gene90662:CDS |
| TGATGAAGATGGCTCTATCA+AGG | 0.515649 | 5.2:+58210272 | MS.gene90662:CDS |
| GCTGCTATGATGGCAAAATC+AGG | 0.516602 | 5.2:+58218129 | MS.gene90662:CDS |
| CAGTATACGTCTCTTCCCTT+GGG | 0.518401 | 5.2:+58223926 | MS.gene90662:CDS |
| CGGAGAGTTTGTCCCATTCG+AGG | 0.518915 | 5.2:-58208458 | None:intergenic |
| GGAGAAATATTAGTTCAAGC+TGG | 0.520726 | 5.2:+58223985 | MS.gene90662:CDS |
| AGATAGGTTTGCAGTCCCTA+AGG | 0.524165 | 5.2:+58223894 | MS.gene90662:intron |
| TCATTTCATGAGCAGTAATG+AGG | 0.526211 | 5.2:+58221025 | MS.gene90662:intron |
| CTTGGGTCGTCATGCCCTCA+AGG | 0.527296 | 5.2:+58208509 | MS.gene90662:CDS |
| TTAAAAGTGGACTCACCAAA+AGG | 0.527505 | 5.2:+58223964 | MS.gene90662:CDS |
| GCAGGAACAAACCCACTTGA+AGG | 0.529489 | 5.2:+58220221 | MS.gene90662:CDS |
| TCAGTAATAGTTTGTTAATG+GGG | 0.531972 | 5.2:-58208347 | None:intergenic |
| GAATCTGAAGCCAACTTACA+AGG | 0.533683 | 5.2:+58221082 | MS.gene90662:CDS |
| ATGTTATCATCTTGCAATTG+CGG | 0.536078 | 5.2:+58208303 | MS.gene90662:CDS |
| AATTTGTGCTCAGATTCAGC+TGG | 0.543532 | 5.2:+58211751 | MS.gene90662:intron |
| CAGAGTGCTGACACTTTGCA+GGG | 0.545113 | 5.2:+58209560 | MS.gene90662:CDS |
| TTTCATGCCTCTTACAGAAG+TGG | 0.546450 | 5.2:+58209628 | MS.gene90662:CDS |
| TATTATCTGCTGCAGTATGG+AGG | 0.549853 | 5.2:-58223476 | None:intergenic |
| ACGATATGTTTGAAGACTGT+AGG | 0.550635 | 5.2:+58218102 | MS.gene90662:CDS |
| AAGTCAACTGGTACTGGCTG+TGG | 0.551805 | 5.2:-58218021 | None:intergenic |
| CTGTTGTTGTAGATTCTGCT+CGG | 0.555250 | 5.2:+58222382 | MS.gene90662:CDS |
| GGCATGACGACCCAAGGAAG+TGG | 0.556037 | 5.2:-58208502 | None:intergenic |
| CCACTTGAAGGAGCAGCACT+AGG | 0.556390 | 5.2:+58220233 | MS.gene90662:CDS |
| CATTCCCTATTGTTGGGTAA+CGG | 0.558120 | 5.2:-58212456 | None:intergenic |
| ACAATCAACAAGGCAGTCAC+TGG | 0.558467 | 5.2:+58220091 | MS.gene90662:CDS |
| CAGATCCATTGTTCACAAGA+AGG | 0.559422 | 5.2:+58223371 | MS.gene90662:CDS |
| CAGCCTCAGAGTCCTCGAAT+GGG | 0.560245 | 5.2:+58208446 | MS.gene90662:CDS |
| ACTATAGCAACGACTCATCA+TGG | 0.561939 | 5.2:+58220299 | MS.gene90662:CDS |
| AGAGGGCAGTCCAAGTCTCT+CGG | 0.562691 | 5.2:-58222361 | None:intergenic |
| ACCCAAGGAAGTGGTGGCAA+AGG | 0.568153 | 5.2:-58208493 | None:intergenic |
| CGGTTTGGTTCAACTAGATG+TGG | 0.571675 | 5.2:+58211802 | MS.gene90662:CDS |
| CTGCTTCGGATAATAGCTGT+TGG | 0.571755 | 5.2:-58222592 | None:intergenic |
| TTACACTGATCTGTTTCAAG+TGG | 0.572433 | 5.2:-58219767 | None:intergenic |
| AAGTTTGGTAGCAAAGGCTG+AGG | 0.576091 | 5.2:+58211426 | MS.gene90662:CDS |
| GCTGTTGGCATTAACCAGAA+AGG | 0.577787 | 5.2:+58211456 | MS.gene90662:CDS |
| AAGTGAATAATATTGATGGC+AGG | 0.578842 | 5.2:+58211188 | MS.gene90662:CDS |
| CCTGACCTTCTTGTGAACAA+TGG | 0.581003 | 5.2:-58223376 | None:intergenic |
| TCATGGAACAGGATCAACTA+TGG | 0.581640 | 5.2:+58209245 | MS.gene90662:intron |
| CTAGTGCTGCTCCTTCAAGT+GGG | 0.581739 | 5.2:-58220232 | None:intergenic |
| TTGGAATCTCTTGCTCATGA+CGG | 0.581994 | 5.2:+58220266 | MS.gene90662:CDS |
| TTTATTGCTCCAGAGCCATA+GGG | 0.585774 | 5.2:+58212509 | MS.gene90662:CDS |
| CGTTACCCAACAATAGGGAA+TGG | 0.589118 | 5.2:+58212457 | MS.gene90662:CDS |
| TTTAAGGGAACAGCAGAAAG+TGG | 0.591563 | 5.2:-58211382 | None:intergenic |
| ATGTTTGAAGACTGTAGGAT+TGG | 0.593640 | 5.2:+58218107 | MS.gene90662:CDS |
| GGCTGAGGCAGATGTGCTGT+TGG | 0.594968 | 5.2:+58211441 | MS.gene90662:CDS |
| ACAGCCTCAGAGTCCTCGAA+TGG | 0.596125 | 5.2:+58208445 | MS.gene90662:CDS |
| AGGTTTGCAGTCCCTAAGGT+TGG | 0.598422 | 5.2:+58223898 | MS.gene90662:CDS |
| CTTGAGGGCATGACGACCCA+AGG | 0.600818 | 5.2:-58208508 | None:intergenic |
| GGCAAAGGAAGAGACCAAAT+CGG | 0.601367 | 5.2:-58208478 | None:intergenic |
| GATATTGAAAAGATACTAGA+CGG | 0.603649 | 5.2:+58211782 | MS.gene90662:CDS |
| AAAGCTTAATCAGAAGTGAA+AGG | 0.610747 | 5.2:+58211065 | MS.gene90662:CDS |
| ATTCAGAAGCAAGAACATAG+AGG | 0.614148 | 5.2:-58219659 | None:intergenic |
| ATGAAAGACCATAGGTAGCA+CGG | 0.614243 | 5.2:-58212344 | None:intergenic |
| AAAACTGAGAGATGTATCCA+AGG | 0.618090 | 5.2:+58223335 | MS.gene90662:CDS |
| TGTCCCATTCGAGGACTCTG+AGG | 0.622741 | 5.2:-58208449 | None:intergenic |
| ATGACGACCCAAGGAAGTGG+TGG | 0.625660 | 5.2:-58208499 | None:intergenic |
| TTCTAGCGCGGAGATTGATG+AGG | 0.626660 | 5.2:+58222419 | MS.gene90662:CDS |
| GCAGAATCTACAACAACAGA+GGG | 0.627034 | 5.2:-58222378 | None:intergenic |
| AAACTGCAATTCAAAGTGCA+AGG | 0.628670 | 5.2:+58209486 | MS.gene90662:CDS |
| CTACTGCTGAATCCTTAACA+AGG | 0.629543 | 5.2:+58212415 | MS.gene90662:CDS |
| ATAGTCTATTGAAAACCAGA+AGG | 0.631248 | 5.2:+58223277 | MS.gene90662:CDS |
| GTTATACGGTTCTTCTAGCG+CGG | 0.633708 | 5.2:+58222407 | MS.gene90662:CDS |
| CATTGTTCACAAGAAGGTCA+GGG | 0.647392 | 5.2:+58223377 | MS.gene90662:CDS |
| TCCTCCAAATGAAAGACCAT+AGG | 0.648761 | 5.2:-58212352 | None:intergenic |
| GCAGTTGAAATGCACAAACA+TGG | 0.652904 | 5.2:+58209322 | MS.gene90662:CDS |
| GTCACTGGTGCTACTAGATG+AGG | 0.654433 | 5.2:+58220106 | MS.gene90662:CDS |
| GCTAAGAAAACCTTACAGCA+CGG | 0.661377 | 5.2:+58223414 | MS.gene90662:CDS |
| GAGACAGAGACAAACCGTGT+TGG | 0.681587 | 5.2:+58208401 | MS.gene90662:CDS |
| AGCAGAATCTACAACAACAG+AGG | 0.682158 | 5.2:-58222379 | None:intergenic |
| AATGGAAGCTGCTACCAACA+CGG | 0.685162 | 5.2:-58208415 | None:intergenic |
| ATAACTGGCCCTAATACTGG+TGG | 0.691845 | 5.2:+58218075 | MS.gene90662:CDS |
| CCAACTTACAAGGTTCTATG+GGG | 0.697470 | 5.2:+58221092 | MS.gene90662:CDS |
| TGAATAATATTGATGGCAGG+TGG | 0.710586 | 5.2:+58211191 | MS.gene90662:CDS |
| TGGCTCTATCAAGGACTCTG+CGG | 0.715249 | 5.2:+58210281 | MS.gene90662:CDS |
| ATATTAAATTACAATCAACA+AGG | 0.731546 | 5.2:+58220081 | MS.gene90662:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 58208303 | 58224053 | 58208303 | ID=MS.gene90662 |
| chr5.2 | mRNA | 58208303 | 58224053 | 58208303 | ID=MS.gene90662.t1;Parent=MS.gene90662 |
| chr5.2 | exon | 58208303 | 58208530 | 58208303 | ID=MS.gene90662.t1.exon1;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58208303 | 58208530 | 58208303 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58209256 | 58209384 | 58209256 | ID=MS.gene90662.t1.exon2;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58209256 | 58209384 | 58209256 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58209482 | 58209649 | 58209482 | ID=MS.gene90662.t1.exon3;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58209482 | 58209649 | 58209482 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58210219 | 58210302 | 58210219 | ID=MS.gene90662.t1.exon4;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58210219 | 58210302 | 58210219 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58210565 | 58210615 | 58210565 | ID=MS.gene90662.t1.exon5;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58210565 | 58210615 | 58210565 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58211049 | 58211105 | 58211049 | ID=MS.gene90662.t1.exon6;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58211049 | 58211105 | 58211049 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58211187 | 58211269 | 58211187 | ID=MS.gene90662.t1.exon7;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58211187 | 58211269 | 58211187 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58211354 | 58211477 | 58211354 | ID=MS.gene90662.t1.exon8;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58211354 | 58211477 | 58211354 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58211764 | 58211823 | 58211764 | ID=MS.gene90662.t1.exon9;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58211764 | 58211823 | 58211764 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58212336 | 58212575 | 58212336 | ID=MS.gene90662.t1.exon10;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58212336 | 58212575 | 58212336 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58217997 | 58218150 | 58217997 | ID=MS.gene90662.t1.exon11;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58217997 | 58218150 | 58217997 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58219658 | 58219785 | 58219658 | ID=MS.gene90662.t1.exon12;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58219658 | 58219785 | 58219658 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58220080 | 58220127 | 58220080 | ID=MS.gene90662.t1.exon13;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58220080 | 58220127 | 58220080 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58220215 | 58220345 | 58220215 | ID=MS.gene90662.t1.exon14;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58220215 | 58220345 | 58220215 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58221040 | 58221122 | 58221040 | ID=MS.gene90662.t1.exon15;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58221040 | 58221122 | 58221040 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58222337 | 58222440 | 58222337 | ID=MS.gene90662.t1.exon16;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58222337 | 58222440 | 58222337 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58222557 | 58222627 | 58222557 | ID=MS.gene90662.t1.exon17;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58222557 | 58222627 | 58222557 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58223257 | 58223561 | 58223257 | ID=MS.gene90662.t1.exon18;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58223257 | 58223561 | 58223257 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| chr5.2 | exon | 58223896 | 58224053 | 58223896 | ID=MS.gene90662.t1.exon19;Parent=MS.gene90662.t1 |
| chr5.2 | CDS | 58223896 | 58224053 | 58223896 | ID=cds.MS.gene90662.t1;Parent=MS.gene90662.t1 |
| Gene Sequence |
| Protein sequence |
