Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060832.t1 | XP_013457802.1 | 97 | 268 | 6 | 1 | 1 | 268 | 1 | 266 | 7.00E-138 | 500 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060832.t1 | B8IN72 | 52.5 | 120 | 54 | 1 | 138 | 257 | 4 | 120 | 3.3e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060832.t1 | A0A072URZ9 | 97.0 | 268 | 6 | 1 | 1 | 268 | 1 | 266 | 5.0e-138 | 500.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052870 | MS.gene060832 | 0.869594 | 2.75E-66 | -1.69E-46 |
| MS.gene052872 | MS.gene060832 | 0.860621 | 1.82E-63 | -1.69E-46 |
| MS.gene060832 | MS.gene060981 | 0.812407 | 4.31E-51 | -1.69E-46 |
| MS.gene060832 | MS.gene06919 | 0.812284 | 4.58E-51 | -1.69E-46 |
| MS.gene060832 | MS.gene070968 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene060832 | MS.gene070979 | 0.809037 | 2.31E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene08083 | 0.826916 | 2.09E-54 | -1.69E-46 |
| MS.gene060832 | MS.gene20267 | 0.823536 | 1.31E-53 | -1.69E-46 |
| MS.gene060832 | MS.gene21693 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene25782 | 0.805381 | 1.37E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene25929 | 0.841125 | 5.75E-58 | -1.69E-46 |
| MS.gene060832 | MS.gene30202 | 0.827578 | 1.45E-54 | -1.69E-46 |
| MS.gene060832 | MS.gene33501 | 0.802626 | 5.13E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene37681 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene38024 | 0.806004 | 1.02E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene43694 | 0.834052 | 3.74E-56 | -1.69E-46 |
| MS.gene060832 | MS.gene44068 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene060832 | MS.gene50561 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene50880 | 0.813292 | 2.76E-51 | -1.69E-46 |
| MS.gene060832 | MS.gene52149 | 0.828325 | 9.57E-55 | -1.69E-46 |
| MS.gene060832 | MS.gene52786 | 0.802547 | 5.33E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene53958 | 0.857515 | 1.55E-62 | -1.69E-46 |
| MS.gene060832 | MS.gene58011 | 0.811939 | 5.45E-51 | -1.69E-46 |
| MS.gene060832 | MS.gene63955 | 0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene68063 | 0.823357 | 1.45E-53 | -1.69E-46 |
| MS.gene060832 | MS.gene70301 | 0.806263 | 8.95E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene70417 | 0.836099 | 1.14E-56 | -1.69E-46 |
| MS.gene060832 | MS.gene71523 | 0.82557 | 4.36E-54 | -1.69E-46 |
| MS.gene060832 | MS.gene73771 | 0.819853 | 9.34E-53 | -1.69E-46 |
| MS.gene060832 | MS.gene78067 | 0.802957 | 4.38E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene78738 | 0.802233 | 6.18E-49 | -1.69E-46 |
| MS.gene060832 | MS.gene85654 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene060832 | MS.gene85923 | 0.836675 | 8.14E-57 | -1.69E-46 |
| MS.gene060832 | MS.gene90662 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene060832 | MS.gene92154 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene060832 | MS.gene99197 | 0.812976 | 3.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060832.t1 | MTR_4g105610 | 97.015 | 268 | 6 | 1 | 1 | 268 | 1 | 266 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCATTTGGTGTGTTTAA+TGG | 0.187250 | 8.2:-19414850 | None:intergenic |
| CCAAGCAGAGCGAGAGAAAA+TGG | 0.241394 | 8.2:-19415530 | None:intergenic |
| GGAGTACTCAAAACTAGTTC+TGG | 0.277502 | 8.2:-19414818 | None:intergenic |
| AACGGTGTCATCTGAGTTAT+TGG | 0.282416 | 8.2:-19414490 | None:intergenic |
| TACCATTTGGTGTGTTTAAT+GGG | 0.285236 | 8.2:-19414849 | None:intergenic |
| TTCATCTTATCTAGGGAGTC+AGG | 0.329309 | 8.2:+19414385 | MS.gene060832:intron |
| GCGTTTAAGGAGGCTAATTA+AGG | 0.341665 | 8.2:+19412596 | MS.gene060832:CDS |
| ACACCGTTCAACTTCTTAGA+AGG | 0.345950 | 8.2:+19414505 | MS.gene060832:CDS |
| TTTGGCGGGTTTGCGGTTGA+TGG | 0.351768 | 8.2:+19412259 | MS.gene060832:CDS |
| GTTAAGTAGTACCAAGAGTT+TGG | 0.384169 | 8.2:+19412241 | MS.gene060832:CDS |
| GTTCTTACCATTCTACCATT+TGG | 0.394756 | 8.2:-19414862 | None:intergenic |
| AGCCTCCTTAAACGCAAAAC+AGG | 0.417473 | 8.2:-19412588 | None:intergenic |
| CTAGTTCTGGGAAGAAGTAC+TGG | 0.429029 | 8.2:-19414805 | None:intergenic |
| CCAAGAGTTTGGCGGGTTTG+CGG | 0.430302 | 8.2:+19412252 | MS.gene060832:CDS |
| TGCTCTGTTGAAACAACAAA+TGG | 0.454031 | 8.2:+19412412 | MS.gene060832:CDS |
| CCGCAAACCCGCCAAACTCT+TGG | 0.454081 | 8.2:-19412252 | None:intergenic |
| GGTGGCATGTAGTAATAATT+CGG | 0.455634 | 8.2:+19412337 | MS.gene060832:CDS |
| CAAGCAGAGCGAGAGAAAAT+GGG | 0.456582 | 8.2:-19415529 | None:intergenic |
| AGGGAGTCAGGGTTCAAGTC+AGG | 0.469382 | 8.2:+19414397 | MS.gene060832:intron |
| TTGGCGGGTTTGCGGTTGAT+GGG | 0.472771 | 8.2:+19412260 | MS.gene060832:CDS |
| GGATCATAACCGATGCTAAC+GGG | 0.473221 | 8.2:+19414532 | MS.gene060832:CDS |
| GATAGAAATGAGGTTGAACT+TGG | 0.475178 | 8.2:-19412374 | None:intergenic |
| AGTCAGGAGTGTATATATAG+AGG | 0.482751 | 8.2:+19414413 | MS.gene060832:CDS |
| GCTTAAGTTGTTTGAAGAAG+AGG | 0.484114 | 8.2:+19412563 | MS.gene060832:CDS |
| GTTCAACCTCATTTCTATCT+CGG | 0.485915 | 8.2:+19412378 | MS.gene060832:CDS |
| GAGTACTCAAAACTAGTTCT+GGG | 0.486792 | 8.2:-19414817 | None:intergenic |
| AATTGCTGATGAGAGATTCC+AGG | 0.487924 | 8.2:+19412623 | MS.gene060832:CDS |
| TTCTGATCTCCCGTTAGCAT+CGG | 0.500995 | 8.2:-19414541 | None:intergenic |
| TTCAACTTCTTAGAAGGCAC+TGG | 0.506775 | 8.2:+19414511 | MS.gene060832:CDS |
| ATGATCCATGTTGATAAAGT+AGG | 0.511158 | 8.2:+19415479 | MS.gene060832:CDS |
| TACCAACGTTGTAGCATCAC+TGG | 0.515982 | 8.2:-19413793 | None:intergenic |
| TGCTGCAGTTCAATCTCAAA+TGG | 0.516025 | 8.2:-19415570 | None:intergenic |
| TGCCCATTAAACACACCAAA+TGG | 0.516035 | 8.2:+19414847 | MS.gene060832:CDS |
| AAACACACCAAATGGTAGAA+TGG | 0.525368 | 8.2:+19414855 | MS.gene060832:CDS |
| GGGAAGAAGTCAGCCTTCGA+AGG | 0.529071 | 8.2:+19414434 | MS.gene060832:CDS |
| GTCAAGAAGCGAGGCTGAAG+AGG | 0.534437 | 8.2:+19412282 | MS.gene060832:CDS |
| AAGAAGCGAGGCTGAAGAGG+AGG | 0.542369 | 8.2:+19412285 | MS.gene060832:CDS |
| AAGTAGTACCAAGAGTTTGG+CGG | 0.543463 | 8.2:+19412244 | MS.gene060832:CDS |
| AGTAGTACCAAGAGTTTGGC+GGG | 0.546540 | 8.2:+19412245 | MS.gene060832:CDS |
| GGAAGAAGTCAGCCTTCGAA+GGG | 0.546891 | 8.2:+19414435 | MS.gene060832:CDS |
| GTCAGGAGTGTATATATAGA+GGG | 0.549148 | 8.2:+19414414 | MS.gene060832:CDS |
| TTGTTGTTTCAACAGAGCAT+AGG | 0.559108 | 8.2:-19412408 | None:intergenic |
| TCATCTTATCTAGGGAGTCA+GGG | 0.560049 | 8.2:+19414386 | MS.gene060832:intron |
| AGCATTGTTATAGGATTACA+AGG | 0.560344 | 8.2:+19412518 | MS.gene060832:intron |
| AGAAGCGAGGCTGAAGAGGA+GGG | 0.560783 | 8.2:+19412286 | MS.gene060832:CDS |
| CAATAGCAATAGCAATATCA+TGG | 0.568801 | 8.2:+19412313 | MS.gene060832:CDS |
| GCGAGGCTGAAGAGGAGGGG+TGG | 0.571122 | 8.2:+19412290 | MS.gene060832:CDS |
| GCAATGATCGCACTAAATGA+AGG | 0.577136 | 8.2:-19415506 | None:intergenic |
| CAATAGCAATATCATGGTGG+TGG | 0.578035 | 8.2:+19412319 | MS.gene060832:CDS |
| GAAGCGAGGCTGAAGAGGAG+GGG | 0.600797 | 8.2:+19412287 | MS.gene060832:CDS |
| ACGGGAGATCAGAAAATGTA+CGG | 0.603434 | 8.2:+19414550 | MS.gene060832:CDS |
| TTCCAGTGATGCTACAACGT+TGG | 0.604919 | 8.2:+19413791 | MS.gene060832:CDS |
| TGGATCATAACCGATGCTAA+CGG | 0.617395 | 8.2:+19414531 | MS.gene060832:CDS |
| GTGAGCCTACTTTATCAACA+TGG | 0.633871 | 8.2:-19415484 | None:intergenic |
| TTGAGTCCGAGATAGAAATG+AGG | 0.635687 | 8.2:-19412384 | None:intergenic |
| GTGCCTTCTAAGAAGTTGAA+CGG | 0.636127 | 8.2:-19414508 | None:intergenic |
| GGAAGTAGCTGCTAAATCTG+AGG | 0.636191 | 8.2:+19412433 | MS.gene060832:CDS |
| AAGCAGAGCGAGAGAAAATG+GGG | 0.642561 | 8.2:-19415528 | None:intergenic |
| GGTTGATGGGTCAAGAAGCG+AGG | 0.667813 | 8.2:+19412273 | MS.gene060832:CDS |
| TGTGTTTAATGGGCATGCAG+AGG | 0.674221 | 8.2:-19414839 | None:intergenic |
| GAAGAAGTCAGCCTTCGAAG+GGG | 0.718520 | 8.2:+19414436 | MS.gene060832:CDS |
| TAGCAATAGCAATATCATGG+TGG | 0.752346 | 8.2:+19412316 | MS.gene060832:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATCTTCATAAAAAAAAAA+AGG | + | chr8.2:19414290-19414309 | MS.gene060832:intron | 15.0% |
| !!! | AAAAAAAGTGTATTTTGAAA+GGG | - | chr8.2:19412700-19412719 | None:intergenic | 15.0% |
| !!! | ATTTAATTTCATCTTATCTA+GGG | + | chr8.2:19414378-19414397 | MS.gene060832:intron | 15.0% |
| !!! | TGCTTTTCTTTTTTATAATA+TGG | - | chr8.2:19415147-19415166 | None:intergenic | 15.0% |
| !!! | TTTTTTATGAAGATCTTTAA+TGG | - | chr8.2:19414286-19414305 | None:intergenic | 15.0% |
| !! | AAAAAGAGAATTTACATTCT+AGG | - | chr8.2:19413900-19413919 | None:intergenic | 20.0% |
| !! | AAATTTGAACTCTGTAAATA+TGG | - | chr8.2:19413450-19413469 | None:intergenic | 20.0% |
| !! | AATGCATTACAATATTCAAT+AGG | + | chr8.2:19412778-19412797 | MS.gene060832:intron | 20.0% |
| !! | TAAAATTATTCATGAATCCA+TGG | - | chr8.2:19415235-19415254 | None:intergenic | 20.0% |
| !! | TGTATAATTTGGGTAAATAT+GGG | - | chr8.2:19414318-19414337 | None:intergenic | 20.0% |
| !! | TTAAGTGTACAAAAAATACA+AGG | + | chr8.2:19412946-19412965 | MS.gene060832:intron | 20.0% |
| !! | TTAAGTGTACAAAAAATACA+AGG | - | chr8.2:19412965-19412946 | None:intergenic | 20.0% |
| !! | TTGAAAGAGTTAAAGAATTA+AGG | + | chr8.2:19414004-19414023 | MS.gene060832:intron | 20.0% |
| !! | TTTATTGAATTGTGAAACAT+AGG | - | chr8.2:19413508-19413527 | None:intergenic | 20.0% |
| !!! | AAGACATGGTATTTTTTTAT+AGG | - | chr8.2:19414086-19414105 | None:intergenic | 20.0% |
| !!! | CATTTAATTTCATCTTATCT+AGG | + | chr8.2:19414377-19414396 | MS.gene060832:intron | 20.0% |
| !!! | GAAAAAAAGTGTATTTTGAA+AGG | - | chr8.2:19412701-19412720 | None:intergenic | 20.0% |
| !!! | TAAATTGATAGTTGTTTGTT+TGG | - | chr8.2:19415077-19415096 | None:intergenic | 20.0% |
| ! | AAAAGGTTCATCTTCTAATT+TGG | + | chr8.2:19414225-19414244 | MS.gene060832:intron | 25.0% |
| ! | AAGTTTGTGGTGTATAATTT+GGG | - | chr8.2:19414328-19414347 | None:intergenic | 25.0% |
| ! | AATGAGTAAAAGCTATAGAT+TGG | - | chr8.2:19413397-19413416 | None:intergenic | 25.0% |
| ! | AATTAGAGATGAAATATGCA+TGG | - | chr8.2:19413629-19413648 | None:intergenic | 25.0% |
| ! | ACGCTTTATAATCTATTGTT+AGG | - | chr8.2:19412843-19412862 | None:intergenic | 25.0% |
| ! | ACTTAATTAAAAATCGTGTG+TGG | + | chr8.2:19412895-19412914 | MS.gene060832:intron | 25.0% |
| ! | ATAGCTTAAATCAAAGAAAG+AGG | - | chr8.2:19413857-19413876 | None:intergenic | 25.0% |
| ! | CACATCAATTTGAATATTGT+GGG | - | chr8.2:19413330-19413349 | None:intergenic | 25.0% |
| ! | CATAAAATGAGGTAATATCA+TGG | + | chr8.2:19415262-19415281 | MS.gene060832:intron | 25.0% |
| ! | CTTAATTAAAAATCGTGTGT+GGG | + | chr8.2:19412896-19412915 | MS.gene060832:intron | 25.0% |
| ! | GTGTATAATTTGGGTAAATA+TGG | - | chr8.2:19414319-19414338 | None:intergenic | 25.0% |
| ! | TAAAGAAAATAATAGACACC+TGG | - | chr8.2:19412644-19412663 | None:intergenic | 25.0% |
| ! | TCACATCAATTTGAATATTG+TGG | - | chr8.2:19413331-19413350 | None:intergenic | 25.0% |
| ! | TGGTTTAATGTCAAATATGA+TGG | - | chr8.2:19415423-19415442 | None:intergenic | 25.0% |
| ! | TGTTGAATATCATTAGAATC+TGG | + | chr8.2:19414117-19414136 | MS.gene060832:intron | 25.0% |
| ! | TGTTGAATTTGAATTTCCAA+AGG | - | chr8.2:19414729-19414748 | None:intergenic | 25.0% |
| ! | TTTACAGAGTTCAAATTTGT+TGG | + | chr8.2:19413452-19413471 | MS.gene060832:intron | 25.0% |
| ! | TTTAGCATTGTCATAAAATG+AGG | + | chr8.2:19415251-19415270 | MS.gene060832:intron | 25.0% |
| ! | TTTATAGTGTTATGCTTCAA+AGG | + | chr8.2:19414595-19414614 | MS.gene060832:intron | 25.0% |
| ! | TTTCTACTCATAAAGAGATA+GGG | - | chr8.2:19415309-19415328 | None:intergenic | 25.0% |
| !! | AAAATTGAACATTTTGTGAG+AGG | - | chr8.2:19414188-19414207 | None:intergenic | 25.0% |
| !! | AAATATGATGGAAACACAAT+CGG | - | chr8.2:19415411-19415430 | None:intergenic | 25.0% |
| !! | AATTTCCAAAGGTTTAAAAC+AGG | - | chr8.2:19414718-19414737 | None:intergenic | 25.0% |
| !! | ACATTTCATTTCTAAAGACA+TGG | - | chr8.2:19414100-19414119 | None:intergenic | 25.0% |
| !! | ACTTGATTTTCTATATGACA+GGG | + | chr8.2:19414759-19414778 | MS.gene060832:intron | 25.0% |
| !! | TACTTGATTTTCTATATGAC+AGG | + | chr8.2:19414758-19414777 | MS.gene060832:intron | 25.0% |
| !! | TTTTCAAATGAGATCTTCAA+CGG | - | chr8.2:19415002-19415021 | None:intergenic | 25.0% |
| !!! | AACATTTTTTATCATGTGGA+AGG | - | chr8.2:19414927-19414946 | None:intergenic | 25.0% |
| !!! | AATACTTTTGAAAACTACAC+CGG | + | chr8.2:19413122-19413141 | MS.gene060832:intron | 25.0% |
| !!! | ACAGATCAAAGCATTTTATA+AGG | - | chr8.2:19414973-19414992 | None:intergenic | 25.0% |
| !!! | ACTCAACATTTTTTATCATG+TGG | - | chr8.2:19414931-19414950 | None:intergenic | 25.0% |
| !!! | CAGATCAAAGCATTTTATAA+GGG | - | chr8.2:19414972-19414991 | None:intergenic | 25.0% |
| !!! | GAACATTTTAAAAAAGAGTG+TGG | - | chr8.2:19413774-19413793 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTGTTTTTTTACC+TGG | + | chr8.2:19414892-19414911 | MS.gene060832:intron | 25.0% |
| !!! | TTTTTTCATGTACAAGTTTG+TGG | - | chr8.2:19414341-19414360 | None:intergenic | 25.0% |
| AACGATCAAAATGCAATCAT+TGG | - | chr8.2:19415361-19415380 | None:intergenic | 30.0% | |
| AATGTTGAGTGTCTAGATTA+TGG | + | chr8.2:19414941-19414960 | MS.gene060832:intron | 30.0% | |
| ACTTAAGAGCTAATTGTTAG+AGG | - | chr8.2:19412932-19412951 | None:intergenic | 30.0% | |
| AGCATTGTTATAGGATTACA+AGG | + | chr8.2:19412518-19412537 | MS.gene060832:intron | 30.0% | |
| ATAGCCAGGTAAAAAAACAA+AGG | - | chr8.2:19414899-19414918 | None:intergenic | 30.0% | |
| ATCTCTTTATGAGTAGAAAC+TGG | + | chr8.2:19415310-19415329 | MS.gene060832:intron | 30.0% | |
| ATCTTCTACAAAGAGTTCAA+AGG | - | chr8.2:19413182-19413201 | None:intergenic | 30.0% | |
| CAAGTTTGTGGTGTATAATT+TGG | - | chr8.2:19414329-19414348 | None:intergenic | 30.0% | |
| CAATAGCAATAGCAATATCA+TGG | + | chr8.2:19412313-19412332 | MS.gene060832:CDS | 30.0% | |
| CAATTTGAATATTGTGGGAT+AGG | - | chr8.2:19413325-19413344 | None:intergenic | 30.0% | |
| GCAATTGTAGAATCTCAAAT+TGG | + | chr8.2:19412477-19412496 | MS.gene060832:intron | 30.0% | |
| GTTGTGATCTGTAATGAAAA+TGG | + | chr8.2:19414251-19414270 | MS.gene060832:intron | 30.0% | |
| GTTTCTACTCATAAAGAGAT+AGG | - | chr8.2:19415310-19415329 | None:intergenic | 30.0% | |
| TAAGGTTCAAATTCTGATGA+AGG | + | chr8.2:19414022-19414041 | MS.gene060832:intron | 30.0% | |
| TCATGAATCCATGGAAAATA+GGG | - | chr8.2:19415226-19415245 | None:intergenic | 30.0% | |
| TCTTCTACAAAGAGTTCAAA+GGG | - | chr8.2:19413181-19413200 | None:intergenic | 30.0% | |
| TCTTCTCAATAAGTTAGACA+GGG | + | chr8.2:19413418-19413437 | MS.gene060832:intron | 30.0% | |
| TGTAGAATCTCAAATTGGAA+TGG | + | chr8.2:19412482-19412501 | MS.gene060832:intron | 30.0% | |
| TTCATGAATCCATGGAAAAT+AGG | - | chr8.2:19415227-19415246 | None:intergenic | 30.0% | |
| TTTCAAATGAGATCTTCAAC+GGG | - | chr8.2:19415001-19415020 | None:intergenic | 30.0% | |
| ! | ATGATCCATGTTGATAAAGT+AGG | + | chr8.2:19415479-19415498 | MS.gene060832:CDS | 30.0% |
| ! | ATTTTCCCTTTTAAATCCAC+AGG | + | chr8.2:19414626-19414645 | MS.gene060832:intron | 30.0% |
| ! | CTTGATTTTCTATATGACAG+GGG | + | chr8.2:19414760-19414779 | MS.gene060832:intron | 30.0% |
| ! | CTTTTCTTCTCTAGTAGAAA+AGG | + | chr8.2:19414208-19414227 | MS.gene060832:intron | 30.0% |
| ! | TAAGAACTGAGCATTGTTAT+AGG | + | chr8.2:19412509-19412528 | MS.gene060832:intron | 30.0% |
| ! | TTGATTTTCTATATGACAGG+GGG | + | chr8.2:19414761-19414780 | MS.gene060832:intron | 30.0% |
| ! | TTTTCCCTTTTAAATCCACA+GGG | + | chr8.2:19414627-19414646 | MS.gene060832:intron | 30.0% |
| !! | AAAGACCTGTTTTAAACCTT+TGG | + | chr8.2:19414710-19414729 | MS.gene060832:intron | 30.0% |
| !! | AGTTCAAATTTGTTGGAGTA+TGG | + | chr8.2:19413459-19413478 | MS.gene060832:intron | 30.0% |
| !! | GGTGTAGTTTTCAAAAGTAT+TGG | - | chr8.2:19413123-19413142 | None:intergenic | 30.0% |
| !! | TACCATTTGGTGTGTTTAAT+GGG | - | chr8.2:19414852-19414871 | None:intergenic | 30.0% |
| !! | TGAAGAGTATCAAAGTTACA+CGG | + | chr8.2:19413007-19413026 | MS.gene060832:intron | 30.0% |
| !! | TGATCGTTTTGTTCAAAGAT+TGG | + | chr8.2:19415373-19415392 | MS.gene060832:intron | 30.0% |
| !! | TTGTTCAAAGATTGGTTTGA+AGG | + | chr8.2:19415381-19415400 | MS.gene060832:intron | 30.0% |
| AAACACACCAAATGGTAGAA+TGG | + | chr8.2:19414855-19414874 | MS.gene060832:CDS | 35.0% | |
| ACGTCAAAGCATGTAAAACA+TGG | - | chr8.2:19415192-19415211 | None:intergenic | 35.0% | |
| AGAACCTTGTATCATATTGC+AGG | + | chr8.2:19415442-19415461 | MS.gene060832:intron | 35.0% | |
| ATAGGATCACATAGACTGAT+AGG | - | chr8.2:19413490-19413509 | None:intergenic | 35.0% | |
| CAGGTCTTTATTAACATAGC+TGG | - | chr8.2:19414699-19414718 | None:intergenic | 35.0% | |
| CGTCAAAGCATGTAAAACAT+GGG | - | chr8.2:19415191-19415210 | None:intergenic | 35.0% | |
| CTCTTCTCAATAAGTTAGAC+AGG | + | chr8.2:19413417-19413436 | MS.gene060832:intron | 35.0% | |
| GACAAAAAAAGAAACATGCG+AGG | + | chr8.2:19412807-19412826 | MS.gene060832:intron | 35.0% | |
| GATAGAAATGAGGTTGAACT+TGG | - | chr8.2:19412377-19412396 | None:intergenic | 35.0% | |
| GGTGGCATGTAGTAATAATT+CGG | + | chr8.2:19412337-19412356 | MS.gene060832:CDS | 35.0% | |
| GTATGATCACTTCTTTCACT+TGG | + | chr8.2:19413813-19413832 | MS.gene060832:intron | 35.0% | |
| GTTAAGTAGTACCAAGAGTT+TGG | + | chr8.2:19412241-19412260 | MS.gene060832:CDS | 35.0% | |
| GTTCAACCTCATTTCTATCT+CGG | + | chr8.2:19412378-19412397 | MS.gene060832:CDS | 35.0% | |
| GTTCTTACCATTCTACCATT+TGG | - | chr8.2:19414865-19414884 | None:intergenic | 35.0% | |
| TAACTCTCACTCAAATGGTA+TGG | + | chr8.2:19412753-19412772 | MS.gene060832:intron | 35.0% | |
| TAGCAATAGCAATATCATGG+TGG | + | chr8.2:19412316-19412335 | MS.gene060832:CDS | 35.0% | |
| TATGTCGATCTGATAGAATG+TGG | - | chr8.2:19413606-19413625 | None:intergenic | 35.0% | |
| TGCAATATGATACAAGGTTC+TGG | - | chr8.2:19415443-19415462 | None:intergenic | 35.0% | |
| TGCTCTGTTGAAACAACAAA+TGG | + | chr8.2:19412412-19412431 | MS.gene060832:CDS | 35.0% | |
| TGTAGAAGATTCACAACCTT+TGG | + | chr8.2:19413192-19413211 | MS.gene060832:intron | 35.0% | |
| ! | ACCTAGGGAGTATATATATG+AGG | - | chr8.2:19414155-19414174 | None:intergenic | 35.0% |
| ! | AGTCAGGAGTGTATATATAG+AGG | + | chr8.2:19414413-19414432 | MS.gene060832:CDS | 35.0% |
| ! | CTAGTTGTGTTTGACACTTT+TGG | - | chr8.2:19413228-19413247 | None:intergenic | 35.0% |
| ! | GAGTACTCAAAACTAGTTCT+GGG | - | chr8.2:19414820-19414839 | None:intergenic | 35.0% |
| ! | GCTTAAGTTGTTTGAAGAAG+AGG | + | chr8.2:19412563-19412582 | MS.gene060832:CDS | 35.0% |
| ! | GTCAGGAGTGTATATATAGA+GGG | + | chr8.2:19414414-19414433 | MS.gene060832:CDS | 35.0% |
| !! | CAAAGAAAGAGGCATCTATA+AGG | - | chr8.2:19413846-19413865 | None:intergenic | 35.0% |
| !! | CTACCATTTGGTGTGTTTAA+TGG | - | chr8.2:19414853-19414872 | None:intergenic | 35.0% |
| !! | GAAGAGTATCAAAGTTACAC+GGG | + | chr8.2:19413043-19413062 | MS.gene060832:intron | 35.0% |
| !! | TTGTTGTTTCAACAGAGCAT+AGG | - | chr8.2:19412411-19412430 | None:intergenic | 35.0% |
| !! | TTTGCTTAAAGCGGTTTTGA+TGG | + | chr8.2:19413296-19413315 | MS.gene060832:intron | 35.0% |
| AAGTAGTACCAAGAGTTTGG+CGG | + | chr8.2:19412244-19412263 | MS.gene060832:CDS | 40.0% | |
| AAGTGCCCTGTGGATTTAAA+AGG | - | chr8.2:19414635-19414654 | None:intergenic | 40.0% | |
| AATTGCTGATGAGAGATTCC+AGG | + | chr8.2:19412623-19412642 | MS.gene060832:CDS | 40.0% | |
| ACACCGTTCAACTTCTTAGA+AGG | + | chr8.2:19414505-19414524 | MS.gene060832:CDS | 40.0% | |
| ACGGGAGATCAGAAAATGTA+CGG | + | chr8.2:19414550-19414569 | MS.gene060832:CDS | 40.0% | |
| AGAGATAGGGAAAGTTGTTG+CGG | - | chr8.2:19415296-19415315 | None:intergenic | 40.0% | |
| AGCTGCATCCTAGAAATAAG+AGG | - | chr8.2:19413721-19413740 | None:intergenic | 40.0% | |
| AGTGCCCTGTGGATTTAAAA+GGG | - | chr8.2:19414634-19414653 | None:intergenic | 40.0% | |
| CAATAGCAATATCATGGTGG+TGG | + | chr8.2:19412319-19412338 | MS.gene060832:CDS | 40.0% | |
| CCTTCCTGCAATATGATACA+AGG | - | chr8.2:19415449-19415468 | None:intergenic | 40.0% | |
| CCTTGTATCATATTGCAGGA+AGG | + | chr8.2:19415446-19415465 | MS.gene060832:intron | 40.0% | |
| GAGCATAACTCTCACTCAAA+TGG | + | chr8.2:19412748-19412767 | MS.gene060832:intron | 40.0% | |
| GCAATGATCGCACTAAATGA+AGG | - | chr8.2:19415509-19415528 | None:intergenic | 40.0% | |
| GCCTCATATATATACTCCCT+AGG | + | chr8.2:19414151-19414170 | MS.gene060832:intron | 40.0% | |
| GCGTTTAAGGAGGCTAATTA+AGG | + | chr8.2:19412596-19412615 | MS.gene060832:CDS | 40.0% | |
| GCTGCATCCTAGAAATAAGA+GGG | - | chr8.2:19413720-19413739 | None:intergenic | 40.0% | |
| GTATCAAAGTTACACGGGAA+TGG | + | chr8.2:19413048-19413067 | MS.gene060832:intron | 40.0% | |
| GTGAGCCTACTTTATCAACA+TGG | - | chr8.2:19415487-19415506 | None:intergenic | 40.0% | |
| GTTGAGTGTCTAGATTATGG+TGG | + | chr8.2:19414944-19414963 | MS.gene060832:intron | 40.0% | |
| TCATCTTATCTAGGGAGTCA+GGG | + | chr8.2:19414386-19414405 | MS.gene060832:intron | 40.0% | |
| TGCCCATTAAACACACCAAA+TGG | + | chr8.2:19414847-19414866 | MS.gene060832:CDS | 40.0% | |
| TGGATCATAACCGATGCTAA+CGG | + | chr8.2:19414531-19414550 | MS.gene060832:CDS | 40.0% | |
| TGTGGAAGGAAATTATAGCC+AGG | - | chr8.2:19414913-19414932 | None:intergenic | 40.0% | |
| TTCATCTTATCTAGGGAGTC+AGG | + | chr8.2:19414385-19414404 | MS.gene060832:intron | 40.0% | |
| TTCCAAGTAACATGTGAGTG+AGG | + | chr8.2:19412718-19412737 | MS.gene060832:intron | 40.0% | |
| TTCTATATGACAGGGGGATT+GGG | + | chr8.2:19414767-19414786 | MS.gene060832:intron | 40.0% | |
| TTGAGTCCGAGATAGAAATG+AGG | - | chr8.2:19412387-19412406 | None:intergenic | 40.0% | |
| TTGAGTGAGAGTTATGCTCA+CGG | - | chr8.2:19412747-19412766 | None:intergenic | 40.0% | |
| TTTCTATATGACAGGGGGAT+TGG | + | chr8.2:19414766-19414785 | MS.gene060832:intron | 40.0% | |
| ! | AAAAAGTATAGCCCCTTCGA+AGG | - | chr8.2:19414450-19414469 | None:intergenic | 40.0% |
| ! | AACCTGTTTTGCGTTTAAGG+AGG | + | chr8.2:19412586-19412605 | MS.gene060832:CDS | 40.0% |
| ! | AGGAACCTGTTTTGCGTTTA+AGG | + | chr8.2:19412583-19412602 | MS.gene060832:CDS | 40.0% |
| ! | CAAAACCGCTTTAAGCAAAG+TGG | - | chr8.2:19413295-19413314 | None:intergenic | 40.0% |
| ! | CACTCTTCCCTCTTATTTCT+AGG | + | chr8.2:19413710-19413729 | MS.gene060832:intron | 40.0% |
| ! | GCTCAACTAGTTTGAGCTAA+AGG | + | chr8.2:19413972-19413991 | MS.gene060832:intron | 40.0% |
| ! | GGAGTACTCAAAACTAGTTC+TGG | - | chr8.2:19414821-19414840 | None:intergenic | 40.0% |
| ! | GTGCCTTCTAAGAAGTTGAA+CGG | - | chr8.2:19414511-19414530 | None:intergenic | 40.0% |
| ! | TGATTGCACCCTATTTTCCA+TGG | + | chr8.2:19415215-19415234 | MS.gene060832:intron | 40.0% |
| ! | TTCAACTTCTTAGAAGGCAC+TGG | + | chr8.2:19414511-19414530 | MS.gene060832:CDS | 40.0% |
| ! | TTTGGCCACTTTGCTTAAAG+CGG | + | chr8.2:19413287-19413306 | MS.gene060832:intron | 40.0% |
| !! | AACGGTGTCATCTGAGTTAT+TGG | - | chr8.2:19414493-19414512 | None:intergenic | 40.0% |
| !! | AGAGGCTATTCTGAAACCTA+GGG | - | chr8.2:19414170-19414189 | None:intergenic | 40.0% |
| !! | TTTTAAATCCACAGGGCACT+TGG | + | chr8.2:19414634-19414653 | MS.gene060832:intron | 40.0% |
| !!! | ATTGGTTTTGCCATCCAGAA+AGG | - | chr8.2:19413105-19413124 | None:intergenic | 40.0% |
| !!! | TTGGTTTTGCCATCCAGAAA+GGG | - | chr8.2:19413104-19413123 | None:intergenic | 40.0% |
| AAAACTACACCGGTAGACCT+AGG | + | chr8.2:19413132-19413151 | MS.gene060832:intron | 45.0% | |
| AAGCAGAGCGAGAGAAAATG+GGG | - | chr8.2:19415531-19415550 | None:intergenic | 45.0% | |
| AGATAGGGAAAGTTGTTGCG+GGG | - | chr8.2:19415294-19415313 | None:intergenic | 45.0% | |
| AGCCTCCTTAAACGCAAAAC+AGG | - | chr8.2:19412591-19412610 | None:intergenic | 45.0% | |
| AGTAGTACCAAGAGTTTGGC+GGG | + | chr8.2:19412245-19412264 | MS.gene060832:CDS | 45.0% | |
| ATAGCAATGTTGCGTCTCCT+AGG | - | chr8.2:19413152-19413171 | None:intergenic | 45.0% | |
| CAAAGTTACACGGGAATGGA+AGG | + | chr8.2:19413052-19413071 | MS.gene060832:intron | 45.0% | |
| CAAGCAGAGCGAGAGAAAAT+GGG | - | chr8.2:19415532-19415551 | None:intergenic | 45.0% | |
| CTCCTCACTCACATGTTACT+TGG | - | chr8.2:19412723-19412742 | None:intergenic | 45.0% | |
| GAGATAGGGAAAGTTGTTGC+GGG | - | chr8.2:19415295-19415314 | None:intergenic | 45.0% | |
| GGAAGTAGCTGCTAAATCTG+AGG | + | chr8.2:19412433-19412452 | MS.gene060832:CDS | 45.0% | |
| GGATCATAACCGATGCTAAC+GGG | + | chr8.2:19414532-19414551 | MS.gene060832:CDS | 45.0% | |
| TACCAACGTTGTAGCATCAC+TGG | - | chr8.2:19413796-19413815 | None:intergenic | 45.0% | |
| TCTATATGACAGGGGGATTG+GGG | + | chr8.2:19414768-19414787 | MS.gene060832:intron | 45.0% | |
| TGAACATGCTTTCTCGCGTT+TGG | + | chr8.2:19413269-19413288 | MS.gene060832:intron | 45.0% | |
| TGCCATCCAGAAAGGGTTAA+TGG | - | chr8.2:19413097-19413116 | None:intergenic | 45.0% | |
| TGCCATTAACCCTTTCTGGA+TGG | + | chr8.2:19413092-19413111 | MS.gene060832:intron | 45.0% | |
| TTCCAGTGATGCTACAACGT+TGG | + | chr8.2:19413791-19413810 | MS.gene060832:CDS | 45.0% | |
| TTCTGATCTCCCGTTAGCAT+CGG | - | chr8.2:19414544-19414563 | None:intergenic | 45.0% | |
| ! | AGTGTGCCATTAACCCTTTC+TGG | + | chr8.2:19413088-19413107 | MS.gene060832:intron | 45.0% |
| ! | TGTGTTTAATGGGCATGCAG+AGG | - | chr8.2:19414842-19414861 | None:intergenic | 45.0% |
| !! | CTAGTTCTGGGAAGAAGTAC+TGG | - | chr8.2:19414808-19414827 | None:intergenic | 45.0% |
| !! | GAGAGGCTATTCTGAAACCT+AGG | - | chr8.2:19414171-19414190 | None:intergenic | 45.0% |
| !! | GATTCACAACCTTTGGTGCT+AGG | + | chr8.2:19413199-19413218 | MS.gene060832:intron | 45.0% |
| !!! | TTTTGGCTTCCTAGCACCAA+AGG | - | chr8.2:19413211-19413230 | None:intergenic | 45.0% |
| CCAAGCAGAGCGAGAGAAAA+TGG | - | chr8.2:19415533-19415552 | None:intergenic | 50.0% | |
| GAAGAAGTCAGCCTTCGAAG+GGG | + | chr8.2:19414436-19414455 | MS.gene060832:CDS | 50.0% | |
| GACATTAACCAAGTGCCCTG+TGG | - | chr8.2:19414645-19414664 | None:intergenic | 50.0% | |
| GGAAGAAGTCAGCCTTCGAA+GGG | + | chr8.2:19414435-19414454 | MS.gene060832:CDS | 50.0% | |
| ! | CCATTTTCTCTCGCTCTGCT+TGG | + | chr8.2:19415530-19415549 | MS.gene060832:CDS | 50.0% |
| AAGAAGCGAGGCTGAAGAGG+AGG | + | chr8.2:19412285-19412304 | MS.gene060832:CDS | 55.0% | |
| ACACGGGAATGGAAGGCAAG+CGG | + | chr8.2:19413059-19413078 | MS.gene060832:intron | 55.0% | |
| AGAAGCGAGGCTGAAGAGGA+GGG | + | chr8.2:19412286-19412305 | MS.gene060832:CDS | 55.0% | |
| AGGGAGTCAGGGTTCAAGTC+AGG | + | chr8.2:19414397-19414416 | MS.gene060832:intron | 55.0% | |
| GGGAAGAAGTCAGCCTTCGA+AGG | + | chr8.2:19414434-19414453 | MS.gene060832:CDS | 55.0% | |
| GTCAAGAAGCGAGGCTGAAG+AGG | + | chr8.2:19412282-19412301 | MS.gene060832:CDS | 55.0% | |
| GTTGCGTCTCCTAGGTCTAC+CGG | - | chr8.2:19413144-19413163 | None:intergenic | 55.0% | |
| !! | CCAAGAGTTTGGCGGGTTTG+CGG | + | chr8.2:19412252-19412271 | MS.gene060832:CDS | 55.0% |
| !! | GGTTGATGGGTCAAGAAGCG+AGG | + | chr8.2:19412273-19412292 | MS.gene060832:CDS | 55.0% |
| !! | TTGGCGGGTTTGCGGTTGAT+GGG | + | chr8.2:19412260-19412279 | MS.gene060832:CDS | 55.0% |
| !! | TTTGGCGGGTTTGCGGTTGA+TGG | + | chr8.2:19412259-19412278 | MS.gene060832:CDS | 55.0% |
| CACGGGAATGGAAGGCAAGC+GGG | + | chr8.2:19413060-19413079 | MS.gene060832:intron | 60.0% | |
| CCGCAAACCCGCCAAACTCT+TGG | - | chr8.2:19412255-19412274 | None:intergenic | 60.0% | |
| GAAGCGAGGCTGAAGAGGAG+GGG | + | chr8.2:19412287-19412306 | MS.gene060832:CDS | 60.0% | |
| GACAGGGGGATTGGGGTTGT+TGG | + | chr8.2:19414775-19414794 | MS.gene060832:intron | 60.0% | |
| GCGAGGCTGAAGAGGAGGGG+TGG | + | chr8.2:19412290-19412309 | MS.gene060832:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19412227 | 19415577 | 19412227 | ID=MS.gene060832 |
| chr8.2 | mRNA | 19412227 | 19415577 | 19412227 | ID=MS.gene060832.t1;Parent=MS.gene060832 |
| chr8.2 | exon | 19412227 | 19412454 | 19412227 | ID=MS.gene060832.t1.exon1;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19412227 | 19412454 | 19412227 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| chr8.2 | exon | 19412531 | 19412644 | 19412531 | ID=MS.gene060832.t1.exon2;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19412531 | 19412644 | 19412531 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| chr8.2 | exon | 19413732 | 19413812 | 19413732 | ID=MS.gene060832.t1.exon3;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19413732 | 19413812 | 19413732 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| chr8.2 | exon | 19414399 | 19414571 | 19414399 | ID=MS.gene060832.t1.exon4;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19414399 | 19414571 | 19414399 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| chr8.2 | exon | 19414780 | 19414876 | 19414780 | ID=MS.gene060832.t1.exon5;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19414780 | 19414876 | 19414780 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| chr8.2 | exon | 19415464 | 19415577 | 19415464 | ID=MS.gene060832.t1.exon6;Parent=MS.gene060832.t1 |
| chr8.2 | CDS | 19415464 | 19415577 | 19415464 | ID=cds.MS.gene060832.t1;Parent=MS.gene060832.t1 |
| Gene Sequence |
| Protein sequence |
