Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90696.t1 | XP_013466128.1 | 97.8 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 3.40E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90696.t1 | Q94B59 | 44.4 | 408 | 219 | 4 | 1 | 403 | 1 | 405 | 2.8e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90696.t1 | A0A072VEC1 | 97.8 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 2.5e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016230 | MS.gene90696 | PPI |
| MS.gene27564 | MS.gene90696 | PPI |
| MS.gene96096 | MS.gene90696 | PPI |
| MS.gene90696 | MS.gene018156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90696.t1 | MTR_1g022400 | 97.772 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 0.0 | 821 |
| MS.gene90696.t1 | MTR_1g072300 | 33.708 | 356 | 229 | 5 | 48 | 399 | 30 | 382 | 1.38e-65 | 218 |
| MS.gene90696.t1 | MTR_3g099753 | 30.372 | 349 | 239 | 3 | 55 | 401 | 38 | 384 | 2.13e-54 | 188 |
| MS.gene90696.t1 | MTR_3g099753 | 29.843 | 382 | 263 | 4 | 23 | 401 | 29 | 408 | 2.33e-54 | 188 |
| MS.gene90696.t1 | MTR_8g069570 | 33.123 | 317 | 209 | 3 | 74 | 390 | 43 | 356 | 7.33e-51 | 178 |
| MS.gene90696.t1 | MTR_8g465890 | 30.749 | 374 | 238 | 8 | 18 | 387 | 4 | 360 | 5.62e-44 | 159 |
| MS.gene90696.t1 | MTR_1g086820 | 29.814 | 322 | 219 | 5 | 38 | 359 | 18 | 332 | 1.93e-43 | 158 |
| MS.gene90696.t1 | MTR_2g090290 | 28.909 | 339 | 231 | 5 | 52 | 383 | 30 | 365 | 2.00e-43 | 158 |
| MS.gene90696.t1 | MTR_2g047855 | 30.685 | 365 | 235 | 7 | 24 | 387 | 14 | 361 | 8.44e-43 | 156 |
| MS.gene90696.t1 | MTR_2g013450 | 30.068 | 296 | 205 | 2 | 74 | 368 | 48 | 342 | 4.12e-42 | 154 |
| MS.gene90696.t1 | MTR_8g059115 | 30.634 | 284 | 190 | 5 | 120 | 401 | 9 | 287 | 6.42e-34 | 130 |
| MS.gene90696.t1 | MTR_8g007375 | 27.200 | 250 | 181 | 1 | 116 | 365 | 6 | 254 | 5.58e-32 | 125 |
| MS.gene90696.t1 | MTR_8g031520 | 31.604 | 212 | 141 | 3 | 39 | 249 | 92 | 300 | 1.00e-30 | 119 |
| MS.gene90696.t1 | MTR_7g089770 | 28.378 | 296 | 198 | 7 | 73 | 362 | 175 | 462 | 4.89e-29 | 119 |
| MS.gene90696.t1 | MTR_1g050750 | 27.703 | 296 | 202 | 7 | 69 | 359 | 105 | 393 | 2.17e-23 | 102 |
| MS.gene90696.t1 | MTR_2g096880 | 23.410 | 346 | 236 | 8 | 13 | 354 | 20 | 340 | 4.54e-23 | 101 |
| MS.gene90696.t1 | MTR_2g036560 | 24.306 | 288 | 194 | 6 | 87 | 360 | 164 | 441 | 1.70e-15 | 79.0 |
| MS.gene90696.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 62 | 395 | 144 | 476 | 1.07e-14 | 76.3 |
| MS.gene90696.t1 | MTR_3g033040 | 23.077 | 338 | 251 | 7 | 62 | 395 | 144 | 476 | 1.26e-14 | 75.9 |
| MS.gene90696.t1 | MTR_7g017530 | 24.898 | 245 | 181 | 3 | 157 | 401 | 286 | 527 | 5.56e-14 | 74.3 |
| MS.gene90696.t1 | MTR_5g008300 | 23.077 | 208 | 158 | 2 | 157 | 364 | 373 | 578 | 1.12e-11 | 67.4 |
| MS.gene90696.t1 | MTR_7g017570 | 23.673 | 245 | 184 | 3 | 157 | 401 | 321 | 562 | 1.60e-11 | 66.6 |
| MS.gene90696.t1 | MTR_7g017570 | 30.303 | 132 | 86 | 2 | 125 | 252 | 357 | 486 | 2.49e-11 | 66.2 |
| MS.gene90696.t1 | MTR_2g030540 | 28.395 | 162 | 111 | 3 | 156 | 317 | 396 | 552 | 6.89e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90696.t1 | AT5G09450 | 56.479 | 409 | 168 | 5 | 1 | 403 | 1 | 405 | 5.02e-169 | 479 |
| MS.gene90696.t1 | AT4G02820 | 33.058 | 363 | 231 | 7 | 45 | 401 | 48 | 404 | 6.02e-61 | 206 |
| MS.gene90696.t1 | AT5G27460 | 30.423 | 378 | 254 | 4 | 31 | 401 | 12 | 387 | 5.49e-53 | 184 |
| MS.gene90696.t1 | AT2G20710 | 30.028 | 353 | 243 | 4 | 46 | 397 | 30 | 379 | 4.21e-51 | 179 |
| MS.gene90696.t1 | AT1G60770 | 34.098 | 305 | 194 | 4 | 88 | 390 | 57 | 356 | 2.18e-49 | 174 |
| MS.gene90696.t1 | AT4G21705 | 29.558 | 362 | 231 | 4 | 8 | 368 | 1 | 339 | 1.26e-46 | 167 |
| MS.gene90696.t1 | AT1G02150 | 29.118 | 340 | 238 | 3 | 66 | 404 | 79 | 416 | 3.37e-46 | 166 |
| MS.gene90696.t1 | AT4G01990 | 30.405 | 296 | 203 | 3 | 73 | 368 | 59 | 351 | 1.13e-41 | 154 |
| MS.gene90696.t1 | AT1G02370 | 27.937 | 315 | 224 | 3 | 46 | 359 | 63 | 375 | 4.67e-41 | 152 |
| MS.gene90696.t1 | AT1G28020 | 30.341 | 323 | 215 | 6 | 73 | 390 | 55 | 372 | 1.67e-35 | 136 |
| MS.gene90696.t1 | AT1G28020 | 35.135 | 111 | 69 | 1 | 56 | 166 | 373 | 480 | 8.82e-14 | 73.2 |
| MS.gene90696.t1 | AT2G20710 | 27.178 | 287 | 205 | 4 | 112 | 397 | 1 | 284 | 3.37e-33 | 128 |
| MS.gene90696.t1 | AT1G80270 | 26.623 | 308 | 216 | 5 | 66 | 369 | 140 | 441 | 5.31e-29 | 119 |
| MS.gene90696.t1 | AT1G80270 | 26.623 | 308 | 216 | 5 | 66 | 369 | 140 | 441 | 5.31e-29 | 119 |
| MS.gene90696.t1 | AT1G80270 | 26.623 | 308 | 216 | 5 | 66 | 369 | 140 | 441 | 5.31e-29 | 119 |
| MS.gene90696.t1 | AT1G80270 | 26.623 | 308 | 216 | 5 | 66 | 369 | 140 | 441 | 5.31e-29 | 119 |
| MS.gene90696.t1 | AT1G80270 | 26.623 | 308 | 216 | 5 | 66 | 369 | 140 | 441 | 5.31e-29 | 119 |
| MS.gene90696.t1 | AT1G15480 | 26.897 | 290 | 204 | 6 | 69 | 357 | 141 | 423 | 1.68e-24 | 105 |
| MS.gene90696.t1 | AT3G15590 | 25.912 | 274 | 194 | 6 | 47 | 319 | 138 | 403 | 7.55e-24 | 104 |
| MS.gene90696.t1 | AT3G15590 | 25.912 | 274 | 194 | 6 | 47 | 319 | 138 | 403 | 7.55e-24 | 104 |
| MS.gene90696.t1 | AT3G11380 | 32.143 | 196 | 131 | 2 | 54 | 247 | 346 | 541 | 2.87e-23 | 102 |
| MS.gene90696.t1 | AT3G11380 | 26.623 | 308 | 187 | 7 | 87 | 390 | 76 | 348 | 1.16e-20 | 94.4 |
| MS.gene90696.t1 | AT1G07590 | 25.532 | 329 | 237 | 6 | 1 | 324 | 8 | 333 | 1.09e-22 | 100 |
| MS.gene90696.t1 | AT1G28000 | 27.556 | 225 | 152 | 4 | 58 | 275 | 37 | 257 | 1.56e-19 | 90.1 |
| MS.gene90696.t1 | AT1G43010 | 23.774 | 265 | 174 | 7 | 27 | 280 | 9 | 256 | 1.84e-15 | 76.3 |
| MS.gene90696.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 87 | 361 | 136 | 413 | 1.42e-13 | 73.2 |
| MS.gene90696.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 87 | 361 | 136 | 413 | 1.42e-13 | 73.2 |
| MS.gene90696.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 87 | 361 | 136 | 413 | 1.42e-13 | 73.2 |
| MS.gene90696.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 87 | 361 | 136 | 413 | 1.42e-13 | 73.2 |
| MS.gene90696.t1 | AT5G02860 | 22.500 | 280 | 210 | 5 | 87 | 361 | 136 | 413 | 1.42e-13 | 73.2 |
| MS.gene90696.t1 | AT2G18940 | 25.185 | 270 | 178 | 9 | 87 | 342 | 137 | 396 | 4.71e-12 | 68.2 |
| MS.gene90696.t1 | AT3G11350 | 29.286 | 140 | 76 | 3 | 99 | 215 | 53 | 192 | 9.27e-12 | 66.6 |
| MS.gene90696.t1 | AT5G27270 | 27.119 | 177 | 124 | 3 | 119 | 292 | 771 | 945 | 6.96e-11 | 64.7 |
| MS.gene90696.t1 | AT5G27270 | 27.119 | 177 | 124 | 3 | 119 | 292 | 566 | 740 | 9.38e-11 | 64.3 |
| MS.gene90696.t1 | AT5G27270 | 27.119 | 177 | 124 | 3 | 119 | 292 | 566 | 740 | 9.38e-11 | 64.3 |
Find 74 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTAGTTGCACTTCTTT+TGG | 0.189227 | 1.4:-1872497 | None:intergenic |
| TTATGCTGGGTTGGGAAATA+AGG | 0.236043 | 1.4:+1874639 | MS.gene90696:CDS |
| GCTTGATTGTAAAAGGATTA+TGG | 0.252184 | 1.4:+1874825 | MS.gene90696:CDS |
| AGGATAAACTTGATCAAATA+TGG | 0.253390 | 1.4:+1874659 | MS.gene90696:CDS |
| TTGATGTGCTTGATTGTAAA+AGG | 0.262901 | 1.4:+1874818 | MS.gene90696:CDS |
| ATGGATAACATATGACTTAC+TGG | 0.307051 | 1.4:+1874609 | MS.gene90696:CDS |
| AGATTAAAAGTAAAGATATC+AGG | 0.320239 | 1.4:-1874388 | None:intergenic |
| TTACTGGTCATTCTTTATGC+TGG | 0.340583 | 1.4:+1874625 | MS.gene90696:CDS |
| TTAATATTGATGAAGTTAGA+AGG | 0.362686 | 1.4:+1874437 | MS.gene90696:CDS |
| GTCATTCTTTATGCTGGGTT+GGG | 0.371727 | 1.4:+1874631 | MS.gene90696:CDS |
| TACTGGTCATTCTTTATGCT+GGG | 0.385252 | 1.4:+1874626 | MS.gene90696:CDS |
| GGTCATTCTTTATGCTGGGT+TGG | 0.385582 | 1.4:+1874630 | MS.gene90696:CDS |
| TCATGAAGAATATGAGTTAT+CGG | 0.398822 | 1.4:+1874063 | MS.gene90696:CDS |
| GAGAATCATATTCAAGTTGT+TGG | 0.401757 | 1.4:-1874881 | None:intergenic |
| CAGAGGGTGATGATGATCTA+AGG | 0.409395 | 1.4:+1872449 | MS.gene90696:CDS |
| GTAATTATTGCTGATTAAAC+TGG | 0.412423 | 1.4:-1872347 | None:intergenic |
| TCAGCGTTATAAACACGCTT+TGG | 0.414368 | 1.4:+1872597 | MS.gene90696:CDS |
| GTGATATTTCTAAAGAGCTT+AGG | 0.447878 | 1.4:+1872569 | MS.gene90696:CDS |
| TATCCTTTCATATAGTTCCT+CGG | 0.457583 | 1.4:-1874242 | None:intergenic |
| TCATCACCCTCTGCAGAGTT+CGG | 0.464784 | 1.4:-1872439 | None:intergenic |
| TGAAGACCTCAAACAACAAA+AGG | 0.466712 | 1.4:+1874360 | MS.gene90696:CDS |
| ATATCACGGAGCTCAGAAAC+AGG | 0.468593 | 1.4:-1872553 | None:intergenic |
| TCTTTACATGTCAGTTGGGC+AGG | 0.472806 | 1.4:+1874315 | MS.gene90696:CDS |
| TTGTACGTAACGGCATCAAA+GGG | 0.473448 | 1.4:-1874280 | None:intergenic |
| GCGTTATAAACACGCTTTGG+AGG | 0.476273 | 1.4:+1872600 | MS.gene90696:CDS |
| CTAAACAGAAAATGATTAGC+AGG | 0.484955 | 1.4:+1874698 | MS.gene90696:CDS |
| CAGGTGAAGTTATTGATCAA+TGG | 0.491061 | 1.4:+1874773 | MS.gene90696:CDS |
| ATGACTCTTTACATGTCAGT+TGG | 0.492710 | 1.4:+1874310 | MS.gene90696:CDS |
| ATTGTACGTAACGGCATCAA+AGG | 0.498103 | 1.4:-1874281 | None:intergenic |
| CTCAGTCTCGACGAGTGAGT+TGG | 0.502370 | 1.4:-1874566 | None:intergenic |
| AAGGGATCACACAAAGTCAA+TGG | 0.508969 | 1.4:+1874590 | MS.gene90696:CDS |
| CTTGATCATGCAAAAGAAGC+AGG | 0.509186 | 1.4:+1874754 | MS.gene90696:CDS |
| CTCCTGCATAAGAATGGAGG+AGG | 0.511719 | 1.4:-1874201 | None:intergenic |
| TGACTCTTTACATGTCAGTT+GGG | 0.520810 | 1.4:+1874311 | MS.gene90696:CDS |
| ACCCTCCTCCATTCTTATGC+AGG | 0.521400 | 1.4:+1874199 | MS.gene90696:CDS |
| CCGCATAGATTTGATGAACA+AGG | 0.522273 | 1.4:+1874102 | MS.gene90696:CDS |
| GTGCTGGTTCTGATGAAAGT+TGG | 0.524579 | 1.4:+1874482 | MS.gene90696:CDS |
| TCACTCGTCGAGACTGAGAA+AGG | 0.530019 | 1.4:+1874571 | MS.gene90696:CDS |
| CATTGAGAAGAACCTCAATC+CGG | 0.538432 | 1.4:+1874903 | MS.gene90696:CDS |
| CAGTGAAATATACGTTGGCC+AGG | 0.538859 | 1.4:-1874519 | None:intergenic |
| TTGAGGTCTTCAACAACCGA+TGG | 0.554094 | 1.4:-1874349 | None:intergenic |
| TGCTGTGACCAGTGATTATG+TGG | 0.559146 | 1.4:+1872408 | MS.gene90696:CDS |
| GAAGAAATGCGTAATGGTGC+TGG | 0.559211 | 1.4:+1874466 | MS.gene90696:CDS |
| ATTTCAGATATCAGAATGGA+TGG | 0.560128 | 1.4:+1874036 | MS.gene90696:intron |
| GATTAAAAGTAAAGATATCA+GGG | 0.567372 | 1.4:-1874387 | None:intergenic |
| CACTCGTCGAGACTGAGAAA+GGG | 0.570011 | 1.4:+1874572 | MS.gene90696:CDS |
| AGTCTCTTCCACATAATCAC+TGG | 0.571573 | 1.4:-1872416 | None:intergenic |
| CATCATTTCATTGTACGTAA+CGG | 0.576928 | 1.4:-1874290 | None:intergenic |
| GCCAACGTATATTTCACTGC+GGG | 0.584073 | 1.4:+1874523 | MS.gene90696:CDS |
| ATTCTTGAAGAAATGCGTAA+TGG | 0.587763 | 1.4:+1874460 | MS.gene90696:CDS |
| TTGCTCCTGCATAAGAATGG+AGG | 0.600601 | 1.4:-1874204 | None:intergenic |
| TAAGCTCTTTAGAAATATCA+CGG | 0.600859 | 1.4:-1872567 | None:intergenic |
| AGGCCGAGGAACTATATGAA+AGG | 0.606287 | 1.4:+1874239 | MS.gene90696:CDS |
| TGGAACTTGCACTATCAAGA+TGG | 0.610177 | 1.4:-1874546 | None:intergenic |
| TGAGGTCTTCAACAACCGAT+GGG | 0.611229 | 1.4:-1874348 | None:intergenic |
| TCGCAAGTCTTTGCAGAGGG+TGG | 0.611538 | 1.4:-1874166 | None:intergenic |
| GTCTCGCAAGTCTTTGCAGA+GGG | 0.613659 | 1.4:-1874169 | None:intergenic |
| AGAGACTCCGAACTCTGCAG+AGG | 0.614041 | 1.4:+1872432 | MS.gene90696:CDS |
| TTGGATTAGATATTTGAACC+TGG | 0.618204 | 1.4:+1874501 | MS.gene90696:CDS |
| GATGATTTCAGATATCAGAA+TGG | 0.621758 | 1.4:+1874032 | MS.gene90696:intron |
| GAGACTCCGAACTCTGCAGA+GGG | 0.624222 | 1.4:+1872433 | MS.gene90696:CDS |
| TTCTCTCTCTCATCAAACGA+AGG | 0.627248 | 1.4:+1872225 | MS.gene90696:CDS |
| ATCAAGCACATCAAAATCTG+TGG | 0.635067 | 1.4:-1874809 | None:intergenic |
| ATCTAAGGAGTAGAATCTTG+AGG | 0.636582 | 1.4:+1872464 | MS.gene90696:CDS |
| GCCCGCAGTGAAATATACGT+TGG | 0.643301 | 1.4:-1874524 | None:intergenic |
| ACGTAACGGCATCAAAGGGG+AGG | 0.670188 | 1.4:-1874276 | None:intergenic |
| GCAGGTAGAAAAGATCCCAT+CGG | 0.682540 | 1.4:+1874333 | MS.gene90696:CDS |
| AGTCTCGCAAGTCTTTGCAG+AGG | 0.690456 | 1.4:-1874170 | None:intergenic |
| TCCTGCATAAGAATGGAGGA+GGG | 0.694937 | 1.4:-1874200 | None:intergenic |
| GGCCAACGTATATTTCACTG+CGG | 0.706091 | 1.4:+1874522 | MS.gene90696:CDS |
| TGAGAGAGAGAAATAGAGAG+CGG | 0.708192 | 1.4:-1872214 | None:intergenic |
| CCTTGTTCATCAAATCTATG+CGG | 0.713202 | 1.4:-1874102 | None:intergenic |
| TGTACGTAACGGCATCAAAG+GGG | 0.718003 | 1.4:-1874279 | None:intergenic |
| TTGCTGAACGATGATTGTGA+TGG | 0.744152 | 1.4:-1872369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATTAATATTGTT+CGG | + | chr1.4:1873926-1873945 | MS.gene90696:intron | 10.0% |
| !! | ATCAAAATTATCAAATATGT+CGG | - | chr1.4:1872994-1873013 | None:intergenic | 15.0% |
| !!! | ATATCTTTACTTTTAATCTA+TGG | + | chr1.4:1874392-1874411 | MS.gene90696:CDS | 15.0% |
| !!! | TCATTTTCTCAAATAATATT+TGG | - | chr1.4:1873676-1873695 | None:intergenic | 15.0% |
| !! | AACTAATGTTCTTCAAAAAT+GGG | + | chr1.4:1872510-1872529 | MS.gene90696:CDS | 20.0% |
| !! | AGATTAAAAGTAAAGATATC+AGG | - | chr1.4:1874391-1874410 | None:intergenic | 20.0% |
| !! | ATAAATAAGCTAATGAGTAA+TGG | - | chr1.4:1872734-1872753 | None:intergenic | 20.0% |
| !! | ATGATTATTAATAGCTAATG+AGG | + | chr1.4:1873610-1873629 | MS.gene90696:intron | 20.0% |
| !! | GATTAAAAGTAAAGATATCA+GGG | - | chr1.4:1874390-1874409 | None:intergenic | 20.0% |
| !! | TTAATATTGATGAAGTTAGA+AGG | + | chr1.4:1874437-1874456 | MS.gene90696:CDS | 20.0% |
| !! | TTCAAAATAATATTCACTTC+TGG | - | chr1.4:1873915-1873934 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTGCTCTATAAAA+CGG | + | chr1.4:1873989-1874008 | MS.gene90696:intron | 20.0% |
| ! | AATTAAGCACTTATGGAATA+TGG | - | chr1.4:1873331-1873350 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGATCAAATA+TGG | + | chr1.4:1874659-1874678 | MS.gene90696:CDS | 25.0% |
| ! | CAACTAATGTTCTTCAAAAA+TGG | + | chr1.4:1872509-1872528 | MS.gene90696:CDS | 25.0% |
| ! | CCAATAATTTGAATCTGATT+GGG | - | chr1.4:1872295-1872314 | None:intergenic | 25.0% |
| ! | CCAATCAGATTCAAATTATT+GGG | + | chr1.4:1872293-1872312 | MS.gene90696:intron | 25.0% |
| ! | TCATGAAGAATATGAGTTAT+CGG | + | chr1.4:1874063-1874082 | MS.gene90696:CDS | 25.0% |
| ! | TTGTCTTGATTACTAATACA+AGG | - | chr1.4:1873573-1873592 | None:intergenic | 25.0% |
| !! | AAGGATTATGGATTCTTTTA+CGG | + | chr1.4:1874837-1874856 | MS.gene90696:CDS | 25.0% |
| !! | GTAATTATTGCTGATTAAAC+TGG | - | chr1.4:1872350-1872369 | None:intergenic | 25.0% |
| !! | TAAGCTCTTTAGAAATATCA+CGG | - | chr1.4:1872570-1872589 | None:intergenic | 25.0% |
| AGTTCTCTGATTGTGAATTA+GGG | + | chr1.4:1873431-1873450 | MS.gene90696:intron | 30.0% | |
| ATATGAAACCAAGCTGAAAA+TGG | + | chr1.4:1873208-1873227 | MS.gene90696:intron | 30.0% | |
| ATGGATAACATATGACTTAC+TGG | + | chr1.4:1874609-1874628 | MS.gene90696:CDS | 30.0% | |
| ATTCTTGAAGAAATGCGTAA+TGG | + | chr1.4:1874460-1874479 | MS.gene90696:CDS | 30.0% | |
| ATTTCAGATATCAGAATGGA+TGG | + | chr1.4:1874036-1874055 | MS.gene90696:intron | 30.0% | |
| CATCATTTCATTGTACGTAA+CGG | - | chr1.4:1874293-1874312 | None:intergenic | 30.0% | |
| CCCAATAATTTGAATCTGAT+TGG | - | chr1.4:1872296-1872315 | None:intergenic | 30.0% | |
| CCCAATCAGATTCAAATTAT+TGG | + | chr1.4:1872292-1872311 | MS.gene90696:intron | 30.0% | |
| CTAAACAGAAAATGATTAGC+AGG | + | chr1.4:1874698-1874717 | MS.gene90696:CDS | 30.0% | |
| CTTGTAACTGTTGCAATAAA+AGG | + | chr1.4:1873807-1873826 | MS.gene90696:intron | 30.0% | |
| GATGATTTCAGATATCAGAA+TGG | + | chr1.4:1874032-1874051 | MS.gene90696:intron | 30.0% | |
| GCTTGATTGTAAAAGGATTA+TGG | + | chr1.4:1874825-1874844 | MS.gene90696:CDS | 30.0% | |
| TAGTTCTCTGATTGTGAATT+AGG | + | chr1.4:1873430-1873449 | MS.gene90696:intron | 30.0% | |
| TATCCTTTCATATAGTTCCT+CGG | - | chr1.4:1874245-1874264 | None:intergenic | 30.0% | |
| TATTAATAGCTAATGAGGCA+CGG | + | chr1.4:1873615-1873634 | MS.gene90696:intron | 30.0% | |
| TGAGAAAATTGGAGAAAGTT+GGG | - | chr1.4:1872269-1872288 | None:intergenic | 30.0% | |
| TGTGAATTAGGGATAATTTC+TGG | + | chr1.4:1873442-1873461 | MS.gene90696:intron | 30.0% | |
| TTGAGAAAATTGGAGAAAGT+TGG | - | chr1.4:1872270-1872289 | None:intergenic | 30.0% | |
| TTGATGTGCTTGATTGTAAA+AGG | + | chr1.4:1874818-1874837 | MS.gene90696:CDS | 30.0% | |
| ! | AACATTAGTTGCACTTCTTT+TGG | - | chr1.4:1872500-1872519 | None:intergenic | 30.0% |
| ! | ACATTAGTTGCACTTCTTTT+GGG | - | chr1.4:1872499-1872518 | None:intergenic | 30.0% |
| ! | ATGGATTCTTTTACGGAAAT+TGG | + | chr1.4:1874844-1874863 | MS.gene90696:CDS | 30.0% |
| ! | CAGAGATTAATAGTTCTGTA+AGG | + | chr1.4:1873750-1873769 | MS.gene90696:intron | 30.0% |
| ! | GATTTGATGAACAAGGTTTT+TGG | + | chr1.4:1874109-1874128 | MS.gene90696:CDS | 30.0% |
| ! | GTGATATTTCTAAAGAGCTT+AGG | + | chr1.4:1872569-1872588 | MS.gene90696:CDS | 30.0% |
| ! | TTAGGGATAATTTCTGGAAA+TGG | + | chr1.4:1873448-1873467 | MS.gene90696:intron | 30.0% |
| ! | TTCAAAAATGGGTTCTTCAA+GGG | + | chr1.4:1872521-1872540 | MS.gene90696:CDS | 30.0% |
| ! | TTCTTTTACGGAAATTGGAT+TGG | + | chr1.4:1874849-1874868 | MS.gene90696:CDS | 30.0% |
| ! | TTGGATTAGATATTTGAACC+TGG | + | chr1.4:1874501-1874520 | MS.gene90696:CDS | 30.0% |
| ! | TTTATTTCAGTTAGCTCTCT+AGG | + | chr1.4:1872749-1872768 | MS.gene90696:intron | 30.0% |
| !! | AACGAGTTCTGAAGTTTATT+TGG | + | chr1.4:1873400-1873419 | MS.gene90696:intron | 30.0% |
| !! | AAGTTGTTTTCATATCCTAG+AGG | + | chr1.4:1873183-1873202 | MS.gene90696:intron | 30.0% |
| !! | ACGAGTTCTGAAGTTTATTT+GGG | + | chr1.4:1873401-1873420 | MS.gene90696:intron | 30.0% |
| !! | AGTTGTTTTCATATCCTAGA+GGG | + | chr1.4:1873184-1873203 | MS.gene90696:intron | 30.0% |
| !! | GAGAATCATATTCAAGTTGT+TGG | - | chr1.4:1874884-1874903 | None:intergenic | 30.0% |
| ACAGCTCAATTAAGCACTTA+TGG | - | chr1.4:1873338-1873357 | None:intergenic | 35.0% | |
| ATCAAGCACATCAAAATCTG+TGG | - | chr1.4:1874812-1874831 | None:intergenic | 35.0% | |
| ATCCAAACAGAGAAAAGACA+GGG | - | chr1.4:1872631-1872650 | None:intergenic | 35.0% | |
| ATCTAAGGAGTAGAATCTTG+AGG | + | chr1.4:1872464-1872483 | MS.gene90696:CDS | 35.0% | |
| ATGACTCTTTACATGTCAGT+TGG | + | chr1.4:1874310-1874329 | MS.gene90696:CDS | 35.0% | |
| CAGGTGAAGTTATTGATCAA+TGG | + | chr1.4:1874773-1874792 | MS.gene90696:CDS | 35.0% | |
| CCTTGTTCATCAAATCTATG+CGG | - | chr1.4:1874105-1874124 | None:intergenic | 35.0% | |
| GAATATGGACATGTCTGTAT+TGG | - | chr1.4:1873316-1873335 | None:intergenic | 35.0% | |
| GGCTTATTTGAGCTTAACTA+CGG | - | chr1.4:1873295-1873314 | None:intergenic | 35.0% | |
| TACTGGTCATTCTTTATGCT+GGG | + | chr1.4:1874626-1874645 | MS.gene90696:CDS | 35.0% | |
| TGAAGACCTCAAACAACAAA+AGG | + | chr1.4:1874360-1874379 | MS.gene90696:CDS | 35.0% | |
| TGACTCTTTACATGTCAGTT+GGG | + | chr1.4:1874311-1874330 | MS.gene90696:CDS | 35.0% | |
| TGTTGTTCAGTGCTAACTAA+GGG | + | chr1.4:1873838-1873857 | MS.gene90696:intron | 35.0% | |
| TTACTGGTCATTCTTTATGC+TGG | + | chr1.4:1874625-1874644 | MS.gene90696:CDS | 35.0% | |
| ! | AAACTGGTGTTTCTGCAAAA+TGG | - | chr1.4:1872334-1872353 | None:intergenic | 35.0% |
| ! | CATTAGTTGCACTTCTTTTG+GGG | - | chr1.4:1872498-1872517 | None:intergenic | 35.0% |
| ! | CTTCAAAAATGGGTTCTTCA+AGG | + | chr1.4:1872520-1872539 | MS.gene90696:CDS | 35.0% |
| ! | TTCACTTCTGGAAACTTCTT+TGG | - | chr1.4:1873903-1873922 | None:intergenic | 35.0% |
| ! | TTTTTGCTCCTGCATAAGAA+TGG | - | chr1.4:1874210-1874229 | None:intergenic | 35.0% |
| !! | CGAGTTCTGAAGTTTATTTG+GGG | + | chr1.4:1873402-1873421 | MS.gene90696:intron | 35.0% |
| !! | TGAGTAATGGACATGTCATA+AGG | - | chr1.4:1872721-1872740 | None:intergenic | 35.0% |
| !! | TGATTGGGTGTTGAGAAAAT+TGG | - | chr1.4:1872280-1872299 | None:intergenic | 35.0% |
| AAACTTCTTTGGCGTTGCAA+TGG | - | chr1.4:1873892-1873911 | None:intergenic | 40.0% | |
| AACCAAGCTGAAAATGGCTT+AGG | + | chr1.4:1873214-1873233 | MS.gene90696:intron | 40.0% | |
| AAGGGATCACACAAAGTCAA+TGG | + | chr1.4:1874590-1874609 | MS.gene90696:CDS | 40.0% | |
| AATCGTTGTCTTGTCAGTGT+TGG | + | chr1.4:1873718-1873737 | MS.gene90696:intron | 40.0% | |
| ACACTGACACATCTAATCGA+AGG | + | chr1.4:1872939-1872958 | MS.gene90696:intron | 40.0% | |
| AGACAGTCAGACACAAACAT+TGG | - | chr1.4:1873078-1873097 | None:intergenic | 40.0% | |
| AGGAGCAAAAATGACCGAAA+AGG | + | chr1.4:1874219-1874238 | MS.gene90696:CDS | 40.0% | |
| AGTCTCTTCCACATAATCAC+TGG | - | chr1.4:1872419-1872438 | None:intergenic | 40.0% | |
| AGTTTAGTGAGACTGTTTGC+AGG | - | chr1.4:1873268-1873287 | None:intergenic | 40.0% | |
| ATTGTACGTAACGGCATCAA+AGG | - | chr1.4:1874284-1874303 | None:intergenic | 40.0% | |
| CATAAGCACTTATGCTCGTT+TGG | + | chr1.4:1872871-1872890 | MS.gene90696:intron | 40.0% | |
| CATCCAAACAGAGAAAAGAC+AGG | - | chr1.4:1872632-1872651 | None:intergenic | 40.0% | |
| CATTGAGAAGAACCTCAATC+CGG | + | chr1.4:1874903-1874922 | MS.gene90696:CDS | 40.0% | |
| CCGCATAGATTTGATGAACA+AGG | + | chr1.4:1874102-1874121 | MS.gene90696:CDS | 40.0% | |
| CTTGATCATGCAAAAGAAGC+AGG | + | chr1.4:1874754-1874773 | MS.gene90696:CDS | 40.0% | |
| GAATGTTTGAGAGAGCTTGT+AGG | + | chr1.4:1872690-1872709 | MS.gene90696:intron | 40.0% | |
| GCTTCATAGTATATAAGCGC+TGG | + | chr1.4:1873100-1873119 | MS.gene90696:intron | 40.0% | |
| GTCATTCTTTATGCTGGGTT+GGG | + | chr1.4:1874631-1874650 | MS.gene90696:CDS | 40.0% | |
| GTTAAATCTGAGCGCATGTT+AGG | + | chr1.4:1873866-1873885 | MS.gene90696:intron | 40.0% | |
| TCAGCGTTATAAACACGCTT+TGG | + | chr1.4:1872597-1872616 | MS.gene90696:CDS | 40.0% | |
| TGAGAGAGAGAAATAGAGAG+CGG | - | chr1.4:1872217-1872236 | None:intergenic | 40.0% | |
| TGGAACTTGCACTATCAAGA+TGG | - | chr1.4:1874549-1874568 | None:intergenic | 40.0% | |
| TGTTGCAATAAAAGGTCCTC+TGG | + | chr1.4:1873815-1873834 | MS.gene90696:intron | 40.0% | |
| TTCTCTCTCTCATCAAACGA+AGG | + | chr1.4:1872225-1872244 | MS.gene90696:CDS | 40.0% | |
| TTGCTGAACGATGATTGTGA+TGG | - | chr1.4:1872372-1872391 | None:intergenic | 40.0% | |
| TTGTACGTAACGGCATCAAA+GGG | - | chr1.4:1874283-1874302 | None:intergenic | 40.0% | |
| ! | ATATAGTTCCTCGGCCTTTT+CGG | - | chr1.4:1874236-1874255 | None:intergenic | 40.0% |
| ! | GTGTTGTTCAGTGCTAACTA+AGG | + | chr1.4:1873837-1873856 | MS.gene90696:intron | 40.0% |
| ! | TTATGCTGGGTTGGGAAATA+AGG | + | chr1.4:1874639-1874658 | MS.gene90696:CDS | 40.0% |
| ! | TTCCCTGTCTTTTCTCTGTT+TGG | + | chr1.4:1872626-1872645 | MS.gene90696:intron | 40.0% |
| !! | TTCCTAAGCCATTTTCAGCT+TGG | - | chr1.4:1873219-1873238 | None:intergenic | 40.0% |
| !!! | GGACAACCTTTTGTTGTTTG+AGG | - | chr1.4:1874369-1874388 | None:intergenic | 40.0% |
| AAAAATGACCGAAAAGGCCG+AGG | + | chr1.4:1874225-1874244 | MS.gene90696:CDS | 45.0% | |
| AGGCCGAGGAACTATATGAA+AGG | + | chr1.4:1874239-1874258 | MS.gene90696:CDS | 45.0% | |
| ATATCACGGAGCTCAGAAAC+AGG | - | chr1.4:1872556-1872575 | None:intergenic | 45.0% | |
| CAGTGAAATATACGTTGGCC+AGG | - | chr1.4:1874522-1874541 | None:intergenic | 45.0% | |
| CTTGGTTTCATATGCCCTCT+AGG | - | chr1.4:1873201-1873220 | None:intergenic | 45.0% | |
| GAAGAAATGCGTAATGGTGC+TGG | + | chr1.4:1874466-1874485 | MS.gene90696:CDS | 45.0% | |
| GCAGGTAGAAAAGATCCCAT+CGG | + | chr1.4:1874333-1874352 | MS.gene90696:CDS | 45.0% | |
| GCCAACGTATATTTCACTGC+GGG | + | chr1.4:1874523-1874542 | MS.gene90696:CDS | 45.0% | |
| GCGTTATAAACACGCTTTGG+AGG | + | chr1.4:1872600-1872619 | MS.gene90696:CDS | 45.0% | |
| GGCCAACGTATATTTCACTG+CGG | + | chr1.4:1874522-1874541 | MS.gene90696:CDS | 45.0% | |
| GGTCATTCTTTATGCTGGGT+TGG | + | chr1.4:1874630-1874649 | MS.gene90696:CDS | 45.0% | |
| TCCTGCATAAGAATGGAGGA+GGG | - | chr1.4:1874203-1874222 | None:intergenic | 45.0% | |
| TCTTTACATGTCAGTTGGGC+AGG | + | chr1.4:1874315-1874334 | MS.gene90696:CDS | 45.0% | |
| TGAGGTCTTCAACAACCGAT+GGG | - | chr1.4:1874351-1874370 | None:intergenic | 45.0% | |
| TGCTGTGACCAGTGATTATG+TGG | + | chr1.4:1872408-1872427 | MS.gene90696:CDS | 45.0% | |
| TGTACGTAACGGCATCAAAG+GGG | - | chr1.4:1874282-1874301 | None:intergenic | 45.0% | |
| TTGAGGTCTTCAACAACCGA+TGG | - | chr1.4:1874352-1874371 | None:intergenic | 45.0% | |
| TTGCTCCTGCATAAGAATGG+AGG | - | chr1.4:1874207-1874226 | None:intergenic | 45.0% | |
| ! | CAGAGGGTGATGATGATCTA+AGG | + | chr1.4:1872449-1872468 | MS.gene90696:CDS | 45.0% |
| ! | TTAGCACTGAACAACACCAG+AGG | - | chr1.4:1873834-1873853 | None:intergenic | 45.0% |
| !! | GTGCTGGTTCTGATGAAAGT+TGG | + | chr1.4:1874482-1874501 | MS.gene90696:CDS | 45.0% |
| ACCCTCCTCCATTCTTATGC+AGG | + | chr1.4:1874199-1874218 | MS.gene90696:CDS | 50.0% | |
| AGTCTCGCAAGTCTTTGCAG+AGG | - | chr1.4:1874173-1874192 | None:intergenic | 50.0% | |
| CAACGTTTCAGTGTCGTGTC+TGG | - | chr1.4:1873650-1873669 | None:intergenic | 50.0% | |
| CACTCGTCGAGACTGAGAAA+GGG | + | chr1.4:1874572-1874591 | MS.gene90696:CDS | 50.0% | |
| CTCCTGCATAAGAATGGAGG+AGG | - | chr1.4:1874204-1874223 | None:intergenic | 50.0% | |
| GCCCGCAGTGAAATATACGT+TGG | - | chr1.4:1874527-1874546 | None:intergenic | 50.0% | |
| GTCTCGCAAGTCTTTGCAGA+GGG | - | chr1.4:1874172-1874191 | None:intergenic | 50.0% | |
| TCACTCGTCGAGACTGAGAA+AGG | + | chr1.4:1874571-1874590 | MS.gene90696:CDS | 50.0% | |
| TCATCACCCTCTGCAGAGTT+CGG | - | chr1.4:1872442-1872461 | None:intergenic | 50.0% | |
| TCGTGACGATGTCAGACACT+GGG | - | chr1.4:1872969-1872988 | None:intergenic | 50.0% | |
| TGGACACACGACACGAACAT+TGG | - | chr1.4:1873058-1873077 | None:intergenic | 50.0% | |
| TTCGTGACGATGTCAGACAC+TGG | - | chr1.4:1872970-1872989 | None:intergenic | 50.0% | |
| ACGTAACGGCATCAAAGGGG+AGG | - | chr1.4:1874279-1874298 | None:intergenic | 55.0% | |
| AGAGACTCCGAACTCTGCAG+AGG | + | chr1.4:1872432-1872451 | MS.gene90696:CDS | 55.0% | |
| CTCAGTCTCGACGAGTGAGT+TGG | - | chr1.4:1874569-1874588 | None:intergenic | 55.0% | |
| GAGACTCCGAACTCTGCAGA+GGG | + | chr1.4:1872433-1872452 | MS.gene90696:CDS | 55.0% | |
| TCGCAAGTCTTTGCAGAGGG+TGG | - | chr1.4:1874169-1874188 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1872206 | 1874936 | 1872206 | ID=MS.gene90696 |
| chr1.4 | mRNA | 1872206 | 1874936 | 1872206 | ID=MS.gene90696.t1;Parent=MS.gene90696 |
| chr1.4 | exon | 1872206 | 1872246 | 1872206 | ID=MS.gene90696.t1.exon1;Parent=MS.gene90696.t1 |
| chr1.4 | CDS | 1872206 | 1872246 | 1872206 | ID=cds.MS.gene90696.t1;Parent=MS.gene90696.t1 |
| chr1.4 | exon | 1872342 | 1872621 | 1872342 | ID=MS.gene90696.t1.exon2;Parent=MS.gene90696.t1 |
| chr1.4 | CDS | 1872342 | 1872621 | 1872342 | ID=cds.MS.gene90696.t1;Parent=MS.gene90696.t1 |
| chr1.4 | exon | 1874043 | 1874936 | 1874043 | ID=MS.gene90696.t1.exon3;Parent=MS.gene90696.t1 |
| chr1.4 | CDS | 1874043 | 1874936 | 1874043 | ID=cds.MS.gene90696.t1;Parent=MS.gene90696.t1 |
| Gene Sequence |
| Protein sequence |
