Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90982.t1 | XP_013456483.1 | 99.3 | 289 | 2 | 0 | 1 | 289 | 116 | 404 | 2.90E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90982.t1 | Q8L883 | 99.3 | 289 | 2 | 0 | 1 | 289 | 116 | 404 | 7.1e-169 | 594.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90982.t1 | A0A072UL82 | 99.3 | 289 | 2 | 0 | 1 | 289 | 116 | 404 | 2.1e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene90982 | 0.803817 | 2.91E-49 | -1.69E-46 |
| MS.gene051067 | MS.gene90982 | 0.814043 | 1.88E-51 | -1.69E-46 |
| MS.gene056520 | MS.gene90982 | 0.807563 | 4.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90982.t1 | MTR_4g073770 | 99.308 | 289 | 2 | 0 | 1 | 289 | 116 | 404 | 0.0 | 589 |
| MS.gene90982.t1 | MTR_3g072870 | 87.543 | 289 | 36 | 0 | 1 | 289 | 113 | 401 | 0.0 | 528 |
| MS.gene90982.t1 | MTR_4g415390 | 84.138 | 290 | 46 | 0 | 1 | 290 | 120 | 409 | 0.0 | 521 |
| MS.gene90982.t1 | MTR_4g415390 | 84.083 | 289 | 46 | 0 | 1 | 289 | 120 | 408 | 0.0 | 517 |
| MS.gene90982.t1 | MTR_7g067450 | 84.429 | 289 | 45 | 0 | 1 | 289 | 120 | 408 | 0.0 | 516 |
| MS.gene90982.t1 | MTR_5g082220 | 82.699 | 289 | 50 | 0 | 1 | 289 | 119 | 407 | 1.38e-180 | 506 |
| MS.gene90982.t1 | MTR_5g082220 | 82.699 | 289 | 50 | 0 | 1 | 289 | 109 | 397 | 2.01e-180 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90982.t1 | AT2G21050 | 90.657 | 289 | 27 | 0 | 1 | 289 | 114 | 402 | 0.0 | 556 |
| MS.gene90982.t1 | AT2G38120 | 85.121 | 289 | 43 | 0 | 1 | 289 | 120 | 408 | 0.0 | 525 |
| MS.gene90982.t1 | AT5G01240 | 85.467 | 289 | 42 | 0 | 1 | 289 | 126 | 414 | 0.0 | 523 |
| MS.gene90982.t1 | AT2G38120 | 85.121 | 289 | 43 | 0 | 1 | 289 | 120 | 408 | 0.0 | 522 |
| MS.gene90982.t1 | AT5G01240 | 85.467 | 289 | 42 | 0 | 1 | 289 | 46 | 334 | 0.0 | 522 |
| MS.gene90982.t1 | AT1G77690 | 84.775 | 289 | 44 | 0 | 1 | 289 | 118 | 406 | 0.0 | 518 |
Find 78 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGGCTACAGCAGTTTAT+TGG | 0.184376 | 4.2:-34838206 | MS.gene90982:CDS |
| GCTATTATATTCCCTTTCTT+TGG | 0.196497 | 4.2:-34837852 | MS.gene90982:CDS |
| GTTCAAGGCCATATATTTAA+TGG | 0.240066 | 4.2:-34838259 | MS.gene90982:CDS |
| GGTTATTCCAATTTGGTTCT+TGG | 0.243473 | 4.2:-34837874 | MS.gene90982:CDS |
| ATGTCACGGAAGGGTGATTT+TGG | 0.254534 | 4.2:+34838135 | None:intergenic |
| TGCCAGTGGTTATTCCAATT+TGG | 0.262524 | 4.2:-34837881 | MS.gene90982:CDS |
| GAATTGCAGTTTATAACATT+TGG | 0.281358 | 4.2:-34837993 | MS.gene90982:intron |
| ATCGGCTACAGCAGTTTATT+GGG | 0.330718 | 4.2:-34838205 | MS.gene90982:CDS |
| TAGGGTAGCCATTAAATATA+TGG | 0.336979 | 4.2:+34838251 | None:intergenic |
| ATAATAGCCAAGAACCAAAT+TGG | 0.338476 | 4.2:+34837867 | None:intergenic |
| GGTCATAACAAGACCCAAAA+AGG | 0.348177 | 4.2:+34839653 | None:intergenic |
| ACAGCAGTTTATTGGGCATT+TGG | 0.349797 | 4.2:-34838198 | MS.gene90982:CDS |
| CAAACATTCTCTACACATTC+GGG | 0.350387 | 4.2:-34839407 | MS.gene90982:CDS |
| CATTTCACAACTATAGAATA+TGG | 0.355943 | 4.2:-34839677 | MS.gene90982:CDS |
| TTCTCCCACACAAAGTATAA+TGG | 0.356078 | 4.2:+34837957 | None:intergenic |
| TCGAGCAGAGGATGATTTAA+AGG | 0.360379 | 4.2:+34837752 | None:intergenic |
| AATTGCAGTTTATAACATTT+GGG | 0.362124 | 4.2:-34837992 | MS.gene90982:intron |
| CAGTGGTTTGAGGTTCTTGA+TGG | 0.365848 | 4.2:-34840130 | MS.gene90982:CDS |
| CACTGGAGAAACGTGGGCTT+GGG | 0.398985 | 4.2:-34840094 | MS.gene90982:CDS |
| ACAAACATTCTCTACACATT+CGG | 0.401564 | 4.2:-34839408 | MS.gene90982:CDS |
| TTGTCAGTGTCAGCACATAT+AGG | 0.402063 | 4.2:+34838232 | None:intergenic |
| AGATCCAACGGTGGAATTGA+TGG | 0.413693 | 4.2:+34837827 | None:intergenic |
| GAGGTTCTTGATGGACTCCT+AGG | 0.432953 | 4.2:-34840121 | MS.gene90982:CDS |
| TGCAGCTGTTCTTCACGGTC+AGG | 0.440570 | 4.2:-34839604 | MS.gene90982:intron |
| ACAATTGCAGCTGTTCTTCA+CGG | 0.442390 | 4.2:-34839609 | MS.gene90982:CDS |
| GTGGAAGGAGTGAAGCATTC+GGG | 0.443204 | 4.2:-34839465 | MS.gene90982:CDS |
| TGTCAGTGTCAGCACATATA+GGG | 0.444170 | 4.2:+34838233 | None:intergenic |
| GTGAAGATGTGAGCAAGGGC+TGG | 0.448315 | 4.2:+34837774 | None:intergenic |
| ACACTGGAGAAACGTGGGCT+TGG | 0.457439 | 4.2:-34840095 | MS.gene90982:CDS |
| TAATTATATGCAGTGGTTTG+AGG | 0.462228 | 4.2:-34840140 | None:intergenic |
| TAAATCATCCTCTGCTCGAC+AGG | 0.465339 | 4.2:-34837748 | MS.gene90982:CDS |
| TTATGACCACTTACACTGCT+TGG | 0.469304 | 4.2:-34839638 | MS.gene90982:CDS |
| ATTCTATAGTTGTGAAATGA+AGG | 0.472883 | 4.2:+34839681 | None:intergenic |
| CGTTTCTCCAGTGTTTCCCT+AGG | 0.484151 | 4.2:+34840104 | None:intergenic |
| ACCTTGCACAAGCTATAAGT+TGG | 0.485131 | 4.2:+34840035 | None:intergenic |
| GGACCCATCAATTCCACCGT+TGG | 0.491878 | 4.2:-34837831 | MS.gene90982:CDS |
| GGTGGAAGGAGTGAAGCATT+CGG | 0.499283 | 4.2:-34839466 | MS.gene90982:CDS |
| GAATTGATGGGTCCAAAGAA+AGG | 0.509696 | 4.2:+34837840 | None:intergenic |
| AAGTTTATGCAAACGTGCAT+TGG | 0.511403 | 4.2:-34837910 | MS.gene90982:CDS |
| GTGGAAGCCACAAAAGTTCA+AGG | 0.514058 | 4.2:-34838274 | MS.gene90982:CDS |
| GCACACCATTATACTTTGTG+TGG | 0.519101 | 4.2:-34837962 | MS.gene90982:CDS |
| ATAATCTTGACAAGAGGACT+TGG | 0.530895 | 4.2:-34839746 | MS.gene90982:CDS |
| TGGAAGAAGAGCAAAAGCAT+TGG | 0.532720 | 4.2:+34838155 | None:intergenic |
| AAGGGCTGGGATGATGTAAA+CGG | 0.549825 | 4.2:+34837788 | None:intergenic |
| AAGATACCAAGCAGTGTAAG+TGG | 0.551218 | 4.2:+34839632 | None:intergenic |
| AGGTTCTTGATGGACTCCTA+GGG | 0.551440 | 4.2:-34840120 | MS.gene90982:CDS |
| CAATAAACTGCTGTAGCCGA+TGG | 0.552857 | 4.2:+34838207 | None:intergenic |
| TGAAGATGTGAGCAAGGGCT+GGG | 0.560605 | 4.2:+34837775 | None:intergenic |
| GATCCAACGGTGGAATTGAT+GGG | 0.560821 | 4.2:+34837828 | None:intergenic |
| AATAACAGCCATGTCACGGA+AGG | 0.562241 | 4.2:+34838125 | None:intergenic |
| TTATGATTAATTATATGCAG+TGG | 0.570414 | 4.2:-34840147 | None:intergenic |
| AAAATCACCCTTCCGTGACA+TGG | 0.573703 | 4.2:-34838133 | MS.gene90982:CDS |
| GAATGTGTAGAGAATGTTTG+TGG | 0.575502 | 4.2:+34839410 | None:intergenic |
| ATGGACTCCTAGGGAAACAC+TGG | 0.577201 | 4.2:-34840111 | MS.gene90982:CDS |
| TTTGTGTGGGAGAAAACAGT+AGG | 0.580837 | 4.2:-34837948 | MS.gene90982:CDS |
| AATTGATGGGTCCAAAGAAA+GGG | 0.585820 | 4.2:+34837841 | None:intergenic |
| TTAAAATAACAGCCATGTCA+CGG | 0.586272 | 4.2:+34838121 | None:intergenic |
| TAAAGGTGAAGATGTGAGCA+AGG | 0.591344 | 4.2:+34837769 | None:intergenic |
| AACCAAATTGGAATAACCAC+TGG | 0.595756 | 4.2:+34837879 | None:intergenic |
| TAAATGATAATCTTGACAAG+AGG | 0.596044 | 4.2:-34839752 | MS.gene90982:CDS |
| GGGAAATAATGCATGCGATG+TGG | 0.596207 | 4.2:-34838293 | MS.gene90982:CDS |
| TCCAACTTATAGCTTGTGCA+AGG | 0.600608 | 4.2:-34840036 | MS.gene90982:intron |
| GATATTGTCTTACACAGTAA+CGG | 0.603545 | 4.2:+34839377 | None:intergenic |
| CACACCATTATACTTTGTGT+GGG | 0.607429 | 4.2:-34837961 | MS.gene90982:CDS |
| TGTTGTGGTGTATAGGTGGA+AGG | 0.609859 | 4.2:-34839480 | MS.gene90982:intron |
| AACATTCTCTACACATTCGG+GGG | 0.631658 | 4.2:-34839405 | MS.gene90982:CDS |
| ATATTATACCTGTCGAGCAG+AGG | 0.646001 | 4.2:+34837740 | None:intergenic |
| GCTGACACTGACAATTCCAT+CGG | 0.648246 | 4.2:-34838223 | MS.gene90982:CDS |
| ATAACAGCCATGTCACGGAA+GGG | 0.649738 | 4.2:+34838126 | None:intergenic |
| AAAGGTGAAGATGTGAGCAA+GGG | 0.654013 | 4.2:+34837770 | None:intergenic |
| AGGGAAACACTGGAGAAACG+TGG | 0.658358 | 4.2:-34840101 | MS.gene90982:CDS |
| TTGTGTGGGAGAAAACAGTA+GGG | 0.665602 | 4.2:-34837947 | MS.gene90982:CDS |
| AAACATTCTCTACACATTCG+GGG | 0.672769 | 4.2:-34839406 | MS.gene90982:CDS |
| ACTGACAAGGAGAGATCCAA+CGG | 0.673567 | 4.2:+34837815 | None:intergenic |
| TGTAAACGGTGAAACTGACA+AGG | 0.685282 | 4.2:+34837802 | None:intergenic |
| GGGAAACACTGGAGAAACGT+GGG | 0.686097 | 4.2:-34840100 | MS.gene90982:CDS |
| TGCATTGGTGAGATTGCCAG+TGG | 0.691338 | 4.2:-34837895 | MS.gene90982:CDS |
| GACAAGGAGAGATCCAACGG+TGG | 0.757962 | 4.2:+34837818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAATTCTATATTTTAC+AGG | - | chr4.2:34838441-34838460 | MS.gene90982:intron | 10.0% |
| !!! | AAATAATTCTATATTTTACA+GGG | - | chr4.2:34838442-34838461 | MS.gene90982:intron | 10.0% |
| !!! | ATTAATTTATTTTCTTCATT+TGG | + | chr4.2:34839530-34839549 | None:intergenic | 10.0% |
| !! | AAATTGATTAACATGTTAAT+TGG | - | chr4.2:34839853-34839872 | MS.gene90982:intron | 15.0% |
| !! | GATTCTGATAATTATTTATT+AGG | + | chr4.2:34838320-34838339 | None:intergenic | 15.0% |
| !!! | AAAATAGAATGTCAATATTT+TGG | + | chr4.2:34839153-34839172 | None:intergenic | 15.0% |
| !!! | AATAATTCTATATTTTACAG+GGG | - | chr4.2:34838443-34838462 | MS.gene90982:intron | 15.0% |
| !!! | AATATCCAAAACTTTAAAAT+AGG | - | chr4.2:34838878-34838897 | MS.gene90982:intron | 15.0% |
| !!! | TTTTGGATATTATATACATA+AGG | + | chr4.2:34838869-34838888 | None:intergenic | 15.0% |
| !! | AATTGCAGTTTATAACATTT+GGG | - | chr4.2:34839884-34839903 | MS.gene90982:intron | 20.0% |
| !! | ATTTATGTAATATATGTTGC+TGG | + | chr4.2:34838109-34838128 | None:intergenic | 20.0% |
| !! | TAAATAAATTCAGTACTAGT+TGG | - | chr4.2:34838624-34838643 | MS.gene90982:intron | 20.0% |
| !!! | AGTAACCTATTTTAAAGTTT+TGG | + | chr4.2:34838886-34838905 | None:intergenic | 20.0% |
| !!! | ATGATGAAAATACCATTTTT+GGG | + | chr4.2:34839191-34839210 | None:intergenic | 20.0% |
| !!! | ATTGTCTTTTTTGGATTTTA+AGG | - | chr4.2:34839474-34839493 | MS.gene90982:intron | 20.0% |
| ! | AAATGAAGGAATAAAAACAG+TGG | + | chr4.2:34838184-34838203 | None:intergenic | 25.0% |
| ! | AAATGCTAAAAGAAAACTCA+TGG | + | chr4.2:34838989-34839008 | None:intergenic | 25.0% |
| ! | ATTCTATAGTTGTGAAATGA+AGG | + | chr4.2:34838198-34838217 | None:intergenic | 25.0% |
| ! | ATTTATAATGATACGTCCAA+AGG | + | chr4.2:34838609-34838628 | None:intergenic | 25.0% |
| ! | CATTTCACAACTATAGAATA+TGG | - | chr4.2:34838199-34838218 | MS.gene90982:CDS | 25.0% |
| ! | GAATTGCAGTTTATAACATT+TGG | - | chr4.2:34839883-34839902 | MS.gene90982:intron | 25.0% |
| ! | GAGAGACATTTGATATATTA+AGG | - | chr4.2:34839407-34839426 | MS.gene90982:CDS | 25.0% |
| ! | GGTGAAAATAAAAAACACAT+GGG | + | chr4.2:34838567-34838586 | None:intergenic | 25.0% |
| ! | GTGAAAATAAAAAACACATG+GGG | + | chr4.2:34838566-34838585 | None:intergenic | 25.0% |
| ! | TAAATGATAATCTTGACAAG+AGG | - | chr4.2:34838124-34838143 | MS.gene90982:CDS | 25.0% |
| ! | TGAGATGATGATAAATGTAT+TGG | - | chr4.2:34839552-34839571 | MS.gene90982:intron | 25.0% |
| ! | TTAACCTCTTTAGACATAAT+CGG | - | chr4.2:34838804-34838823 | MS.gene90982:intron | 25.0% |
| !! | AATTGCACATTTCTTTTGTT+TGG | - | chr4.2:34837809-34837828 | MS.gene90982:CDS | 25.0% |
| !! | ATAATTTTAGACCCCAAAAA+TGG | - | chr4.2:34839176-34839195 | MS.gene90982:intron | 25.0% |
| !! | ATGATGATAAATGTATTGGT+TGG | - | chr4.2:34839556-34839575 | MS.gene90982:intron | 25.0% |
| !! | GATGATGAAAATACCATTTT+TGG | + | chr4.2:34839192-34839211 | None:intergenic | 25.0% |
| !! | TATAGAATATGGTCCTTTTT+GGG | - | chr4.2:34838210-34838229 | MS.gene90982:CDS | 25.0% |
| !!! | ACAAGAGTTATTGTCTTTTT+TGG | - | chr4.2:34839465-34839484 | MS.gene90982:CDS | 25.0% |
| !!! | GCTACTTTTCTATTTACTAT+AGG | + | chr4.2:34839286-34839305 | None:intergenic | 25.0% |
| !!! | TATTTTAATGCTCATTCATC+AGG | - | chr4.2:34839770-34839789 | MS.gene90982:intron | 25.0% |
| !!! | TGATGAAAATACCATTTTTG+GGG | + | chr4.2:34839190-34839209 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTATATGTTGTTG+TGG | - | chr4.2:34838381-34838400 | MS.gene90982:intron | 25.0% |
| AAAGTAGTACAATACCATAG+TGG | - | chr4.2:34838667-34838686 | MS.gene90982:intron | 30.0% | |
| AAATAACCATGCAACAATTG+GGG | - | chr4.2:34838696-34838715 | MS.gene90982:intron | 30.0% | |
| AAGAAAACTCATGGAGTTTA+AGG | + | chr4.2:34838980-34838999 | None:intergenic | 30.0% | |
| ACAAACATTCTCTACACATT+CGG | - | chr4.2:34838468-34838487 | MS.gene90982:intron | 30.0% | |
| ATAATAGCCAAGAACCAAAT+TGG | + | chr4.2:34840012-34840031 | None:intergenic | 30.0% | |
| CAAGAAAGAGTTAAAGAAAG+AGG | + | chr4.2:34837885-34837904 | None:intergenic | 30.0% | |
| CATTATTCACTGTAAAAAGC+TGG | + | chr4.2:34839101-34839120 | None:intergenic | 30.0% | |
| CTGCAACACCAATATTTATT+GGG | - | chr4.2:34838035-34838054 | MS.gene90982:intron | 30.0% | |
| GAAATAACCATGCAACAATT+GGG | - | chr4.2:34838695-34838714 | MS.gene90982:intron | 30.0% | |
| GATATTGTCTTACACAGTAA+CGG | + | chr4.2:34838502-34838521 | None:intergenic | 30.0% | |
| GATTATGTCTAAAGAGGTTA+AGG | + | chr4.2:34838805-34838824 | None:intergenic | 30.0% | |
| GATTATGTCTAGAGAAGTTA+AGG | + | chr4.2:34838749-34838768 | None:intergenic | 30.0% | |
| GCTATTATATTCCCTTTCTT+TGG | - | chr4.2:34840024-34840043 | MS.gene90982:intron | 30.0% | |
| GGGTGAAAATAAAAAACACA+TGG | + | chr4.2:34838568-34838587 | None:intergenic | 30.0% | |
| GTAAATAGAAAAGTAGCTCT+TGG | - | chr4.2:34839289-34839308 | MS.gene90982:intron | 30.0% | |
| GTGTATGTGTTAAAACGTAA+AGG | + | chr4.2:34838544-34838563 | None:intergenic | 30.0% | |
| GTTCAAGGCCATATATTTAA+TGG | - | chr4.2:34839617-34839636 | MS.gene90982:CDS | 30.0% | |
| TAGGGTAGCCATTAAATATA+TGG | + | chr4.2:34839628-34839647 | None:intergenic | 30.0% | |
| TATATGTTGTTGTGGTGTAT+AGG | - | chr4.2:34838389-34838408 | MS.gene90982:intron | 30.0% | |
| TCATGGAGTTTAAGGAAAAA+GGG | + | chr4.2:34838972-34838991 | None:intergenic | 30.0% | |
| TGCAACACCAATATTTATTG+GGG | - | chr4.2:34838036-34838055 | MS.gene90982:intron | 30.0% | |
| TTAAAATAACAGCCATGTCA+CGG | + | chr4.2:34839758-34839777 | None:intergenic | 30.0% | |
| ! | ATTTTTAACCAAGTGACCTT+AGG | + | chr4.2:34839316-34839335 | None:intergenic | 30.0% |
| ! | CTATAGAATATGGTCCTTTT+TGG | - | chr4.2:34838209-34838228 | MS.gene90982:CDS | 30.0% |
| !! | ATAAATGTATTGGTTGGTAC+AGG | - | chr4.2:34839562-34839581 | MS.gene90982:intron | 30.0% |
| !! | TAAATGTATTGGTTGGTACA+GGG | - | chr4.2:34839563-34839582 | MS.gene90982:intron | 30.0% |
| !!! | TTTTTTATTTTCACCCCTCA+TGG | - | chr4.2:34838572-34838591 | MS.gene90982:intron | 30.0% |
| AAACATTCTCTACACATTCG+GGG | - | chr4.2:34838470-34838489 | MS.gene90982:intron | 35.0% | |
| AACCAAATTGGAATAACCAC+TGG | + | chr4.2:34840000-34840019 | None:intergenic | 35.0% | |
| AAGGCAAGTAAAATACCATG+AGG | + | chr4.2:34838590-34838609 | None:intergenic | 35.0% | |
| AAGTTTATGCAAACGTGCAT+TGG | - | chr4.2:34839966-34839985 | MS.gene90982:intron | 35.0% | |
| AGGCAAGTAAAATACCATGA+GGG | + | chr4.2:34838589-34838608 | None:intergenic | 35.0% | |
| ATAATCTTGACAAGAGGACT+TGG | - | chr4.2:34838130-34838149 | MS.gene90982:CDS | 35.0% | |
| ATGCACACCCCAATAAATAT+TGG | + | chr4.2:34838046-34838065 | None:intergenic | 35.0% | |
| CAAACATTCTCTACACATTC+GGG | - | chr4.2:34838469-34838488 | MS.gene90982:intron | 35.0% | |
| CACACCATTATACTTTGTGT+GGG | - | chr4.2:34839915-34839934 | MS.gene90982:intron | 35.0% | |
| CCATTTCAAAGAAAGAACCT+TGG | + | chr4.2:34839022-34839041 | None:intergenic | 35.0% | |
| CCTGCAACACCAATATTTAT+TGG | - | chr4.2:34838034-34838053 | MS.gene90982:intron | 35.0% | |
| CGAAATAACCATGCAACAAT+TGG | - | chr4.2:34838694-34838713 | MS.gene90982:intron | 35.0% | |
| CTAAAGAGGTTAAGGACTTA+AGG | + | chr4.2:34838797-34838816 | None:intergenic | 35.0% | |
| CTCATGGAGTTTAAGGAAAA+AGG | + | chr4.2:34838973-34838992 | None:intergenic | 35.0% | |
| GAATGTGTAGAGAATGTTTG+TGG | + | chr4.2:34838469-34838488 | None:intergenic | 35.0% | |
| TGAAGGAATAAAAACAGTGG+TGG | + | chr4.2:34838181-34838200 | None:intergenic | 35.0% | |
| TGTTCCGATTATGTCTAAAG+AGG | + | chr4.2:34838811-34838830 | None:intergenic | 35.0% | |
| TTAAAGAAAGAGGTCAGAGT+AGG | + | chr4.2:34837875-34837894 | None:intergenic | 35.0% | |
| TTCTCCCACACAAAGTATAA+TGG | + | chr4.2:34839922-34839941 | None:intergenic | 35.0% | |
| ! | AATTGATGGGTCCAAAGAAA+GGG | + | chr4.2:34840038-34840057 | None:intergenic | 35.0% |
| ! | ACCTTTTAAACTGTCTGAGT+CGG | + | chr4.2:34839380-34839399 | None:intergenic | 35.0% |
| ! | AGGACTTGGACTTACATTTT+CGG | - | chr4.2:34838144-34838163 | MS.gene90982:CDS | 35.0% |
| ! | CATGGTATTTTACTTGCCTT+TGG | - | chr4.2:34838590-34838609 | MS.gene90982:intron | 35.0% |
| ! | CCAAGGTTCTTTCTTTGAAA+TGG | - | chr4.2:34839019-34839038 | MS.gene90982:intron | 35.0% |
| ! | TGAATGAATGTGTTGCTACT+AGG | + | chr4.2:34839798-34839817 | None:intergenic | 35.0% |
| ! | TTTTAACCCCAAAATACCCT+TGG | - | chr4.2:34838923-34838942 | MS.gene90982:intron | 35.0% |
| !! | ATAAATATTGGTGTTGCAGG+TGG | + | chr4.2:34838034-34838053 | None:intergenic | 35.0% |
| !! | CCAATAAATATTGGTGTTGC+AGG | + | chr4.2:34838037-34838056 | None:intergenic | 35.0% |
| !! | GGTTATTCCAATTTGGTTCT+TGG | - | chr4.2:34840002-34840021 | MS.gene90982:intron | 35.0% |
| !! | TATATGGCCTTGAACTTTTG+TGG | + | chr4.2:34839612-34839631 | None:intergenic | 35.0% |
| !!! | GGATTTTAAGGCAACATACA+TGG | - | chr4.2:34839486-34839505 | MS.gene90982:intron | 35.0% |
| AAAAGTAGCTCTTGGACCTA+AGG | - | chr4.2:34839297-34839316 | MS.gene90982:intron | 40.0% | |
| AAAGGTGAAGATGTGAGCAA+GGG | + | chr4.2:34840109-34840128 | None:intergenic | 40.0% | |
| AACATTCTCTACACATTCGG+GGG | - | chr4.2:34838471-34838490 | MS.gene90982:intron | 40.0% | |
| AAGAAGACCCTCATAGATTC+AGG | - | chr4.2:34839072-34839091 | MS.gene90982:intron | 40.0% | |
| AAGATACCAAGCAGTGTAAG+TGG | + | chr4.2:34838247-34838266 | None:intergenic | 40.0% | |
| ACAATTGCAGCTGTTCTTCA+CGG | - | chr4.2:34838267-34838286 | MS.gene90982:CDS | 40.0% | |
| ACAGCAGTTTATTGGGCATT+TGG | - | chr4.2:34839678-34839697 | MS.gene90982:CDS | 40.0% | |
| ACCTTGCACAAGCTATAAGT+TGG | + | chr4.2:34837844-34837863 | None:intergenic | 40.0% | |
| AGCATTTAGCTAGAAAGCCA+AGG | - | chr4.2:34839002-34839021 | MS.gene90982:intron | 40.0% | |
| ATCGGCTACAGCAGTTTATT+GGG | - | chr4.2:34839671-34839690 | MS.gene90982:CDS | 40.0% | |
| ATGTTGTTGTGGTGTATAGG+TGG | - | chr4.2:34838392-34838411 | MS.gene90982:intron | 40.0% | |
| GAAGTGAAGTGAAGAACCAA+GGG | + | chr4.2:34839445-34839464 | None:intergenic | 40.0% | |
| GCACACCATTATACTTTGTG+TGG | - | chr4.2:34839914-34839933 | MS.gene90982:intron | 40.0% | |
| GGCAAGTAAAATACCATGAG+GGG | + | chr4.2:34838588-34838607 | None:intergenic | 40.0% | |
| GGTCATAACAAGACCCAAAA+AGG | + | chr4.2:34838226-34838245 | None:intergenic | 40.0% | |
| TAAAGGTGAAGATGTGAGCA+AGG | + | chr4.2:34840110-34840129 | None:intergenic | 40.0% | |
| TCGAGCAGAGGATGATTTAA+AGG | + | chr4.2:34840127-34840146 | None:intergenic | 40.0% | |
| TGAAGTGAAGTGAAGAACCA+AGG | + | chr4.2:34839446-34839465 | None:intergenic | 40.0% | |
| TGCCAGTGGTTATTCCAATT+TGG | - | chr4.2:34839995-34840014 | MS.gene90982:intron | 40.0% | |
| TGTAAACGGTGAAACTGACA+AGG | + | chr4.2:34840077-34840096 | None:intergenic | 40.0% | |
| TGTCAGTGTCAGCACATATA+GGG | + | chr4.2:34839646-34839665 | None:intergenic | 40.0% | |
| TTATGACCACTTACACTGCT+TGG | - | chr4.2:34838238-34838257 | MS.gene90982:CDS | 40.0% | |
| TTGTCAGTGTCAGCACATAT+AGG | + | chr4.2:34839647-34839666 | None:intergenic | 40.0% | |
| TTGTGTGGGAGAAAACAGTA+GGG | - | chr4.2:34839929-34839948 | MS.gene90982:intron | 40.0% | |
| TTTAAGCCCCAATTGTTGCA+TGG | + | chr4.2:34838705-34838724 | None:intergenic | 40.0% | |
| TTTGTGTGGGAGAAAACAGT+AGG | - | chr4.2:34839928-34839947 | MS.gene90982:intron | 40.0% | |
| ! | CCTTTTAAACTGTCTGAGTC+GGG | + | chr4.2:34839379-34839398 | None:intergenic | 40.0% |
| ! | GAATTGATGGGTCCAAAGAA+AGG | + | chr4.2:34840039-34840058 | None:intergenic | 40.0% |
| ! | GGTTATTTCGCTTTCCACTA+TGG | + | chr4.2:34838684-34838703 | None:intergenic | 40.0% |
| ! | TCCAACTTATAGCTTGTGCA+AGG | - | chr4.2:34837840-34837859 | MS.gene90982:CDS | 40.0% |
| ! | TGGAAGAAGAGCAAAAGCAT+TGG | + | chr4.2:34839724-34839743 | None:intergenic | 40.0% |
| AAAATACCCTTGGTAGGCGT+GGG | - | chr4.2:34838933-34838952 | MS.gene90982:intron | 45.0% | |
| AAAATCACCCTTCCGTGACA+TGG | - | chr4.2:34839743-34839762 | MS.gene90982:CDS | 45.0% | |
| AACCCCAAAATACCCTTGGT+AGG | - | chr4.2:34838927-34838946 | MS.gene90982:intron | 45.0% | |
| AAGAAAGAGGTCAGAGTAGG+TGG | + | chr4.2:34837872-34837891 | None:intergenic | 45.0% | |
| AAGGGCTGGGATGATGTAAA+CGG | + | chr4.2:34840091-34840110 | None:intergenic | 45.0% | |
| AATAACAGCCATGTCACGGA+AGG | + | chr4.2:34839754-34839773 | None:intergenic | 45.0% | |
| ACTGACAAGGAGAGATCCAA+CGG | + | chr4.2:34840064-34840083 | None:intergenic | 45.0% | |
| AGATCCAACGGTGGAATTGA+TGG | + | chr4.2:34840052-34840071 | None:intergenic | 45.0% | |
| ATAACAGCCATGTCACGGAA+GGG | + | chr4.2:34839753-34839772 | None:intergenic | 45.0% | |
| CAATAAACTGCTGTAGCCGA+TGG | + | chr4.2:34839672-34839691 | None:intergenic | 45.0% | |
| CCCGACTCAGACAGTTTAAA+AGG | - | chr4.2:34839376-34839395 | MS.gene90982:intron | 45.0% | |
| CTGGATGCCTGAATCTATGA+GGG | + | chr4.2:34839082-34839101 | None:intergenic | 45.0% | |
| GATCCAACGGTGGAATTGAT+GGG | + | chr4.2:34840051-34840070 | None:intergenic | 45.0% | |
| GCTGACACTGACAATTCCAT+CGG | - | chr4.2:34839653-34839672 | MS.gene90982:CDS | 45.0% | |
| GGGAAATAATGCATGCGATG+TGG | - | chr4.2:34839583-34839602 | MS.gene90982:intron | 45.0% | |
| GTGGAAGCCACAAAAGTTCA+AGG | - | chr4.2:34839602-34839621 | MS.gene90982:intron | 45.0% | |
| TAAATCATCCTCTGCTCGAC+AGG | - | chr4.2:34840128-34840147 | MS.gene90982:CDS | 45.0% | |
| TGTTGTGGTGTATAGGTGGA+AGG | - | chr4.2:34838396-34838415 | MS.gene90982:intron | 45.0% | |
| ! | ATGTCACGGAAGGGTGATTT+TGG | + | chr4.2:34839744-34839763 | None:intergenic | 45.0% |
| ! | CAGTGGTTTGAGGTTCTTGA+TGG | - | chr4.2:34837746-34837765 | MS.gene90982:CDS | 45.0% |
| ! | CATCGGCTACAGCAGTTTAT+TGG | - | chr4.2:34839670-34839689 | MS.gene90982:CDS | 45.0% |
| !! | AGGTTCTTGATGGACTCCTA+GGG | - | chr4.2:34837756-34837775 | MS.gene90982:CDS | 45.0% |
| !!! | ACGCCTACCAAGGGTATTTT+GGG | + | chr4.2:34838933-34838952 | None:intergenic | 45.0% |
| !! | CAAAATTAATTAATTAATAT+TGG | + | chr4.2:34838366-34838385 | None:intergenic | 5.0% |
| !!! | AAATATAGAATTATTTTATT+TGG | + | chr4.2:34838438-34838457 | None:intergenic | 5.0% |
| !!! | CAATATTAATTAATTAATTT+TGG | - | chr4.2:34838364-34838383 | MS.gene90982:intron | 5.0% |
| AAGGTGCAAGTTCGAACCCT+TGG | - | chr4.2:34839426-34839445 | MS.gene90982:CDS | 50.0% | |
| AGGGAAACACTGGAGAAACG+TGG | - | chr4.2:34837775-34837794 | MS.gene90982:CDS | 50.0% | |
| ATGGACTCCTAGGGAAACAC+TGG | - | chr4.2:34837765-34837784 | MS.gene90982:CDS | 50.0% | |
| CAAAATACCCTTGGTAGGCG+TGG | - | chr4.2:34838932-34838951 | MS.gene90982:intron | 50.0% | |
| CGTTTCTCCAGTGTTTCCCT+AGG | + | chr4.2:34837775-34837794 | None:intergenic | 50.0% | |
| CTCTTGGACCTAAGGTCACT+TGG | - | chr4.2:34839305-34839324 | MS.gene90982:intron | 50.0% | |
| GCTGGATGCCTGAATCTATG+AGG | + | chr4.2:34839083-34839102 | None:intergenic | 50.0% | |
| GGGAAACACTGGAGAAACGT+GGG | - | chr4.2:34837776-34837795 | MS.gene90982:CDS | 50.0% | |
| TGAAGATGTGAGCAAGGGCT+GGG | + | chr4.2:34840104-34840123 | None:intergenic | 50.0% | |
| ! | GGTGGAAGGAGTGAAGCATT+CGG | - | chr4.2:34838410-34838429 | MS.gene90982:intron | 50.0% |
| ! | GTGGAAGGAGTGAAGCATTC+GGG | - | chr4.2:34838411-34838430 | MS.gene90982:intron | 50.0% |
| ! | TGCATTGGTGAGATTGCCAG+TGG | - | chr4.2:34839981-34840000 | MS.gene90982:intron | 50.0% |
| !! | GAGGTTCTTGATGGACTCCT+AGG | - | chr4.2:34837755-34837774 | MS.gene90982:CDS | 50.0% |
| !!! | CACGCCTACCAAGGGTATTT+TGG | + | chr4.2:34838934-34838953 | None:intergenic | 50.0% |
| !!! | CGCCTACCAAGGGTATTTTG+GGG | + | chr4.2:34838932-34838951 | None:intergenic | 50.0% |
| ACACTGGAGAAACGTGGGCT+TGG | - | chr4.2:34837781-34837800 | MS.gene90982:CDS | 55.0% | |
| CACTGGAGAAACGTGGGCTT+GGG | - | chr4.2:34837782-34837801 | MS.gene90982:CDS | 55.0% | |
| GACAAGGAGAGATCCAACGG+TGG | + | chr4.2:34840061-34840080 | None:intergenic | 55.0% | |
| GGACCCATCAATTCCACCGT+TGG | - | chr4.2:34840045-34840064 | MS.gene90982:CDS | 55.0% | |
| GTGAAGATGTGAGCAAGGGC+TGG | + | chr4.2:34840105-34840124 | None:intergenic | 55.0% | |
| TGCAGCTGTTCTTCACGGTC+AGG | - | chr4.2:34838272-34838291 | MS.gene90982:CDS | 55.0% | |
| ATACCCTTGGTAGGCGTGGG+AGG | - | chr4.2:34838936-34838955 | MS.gene90982:intron | 60.0% | |
| TTGCCTCCCACGCCTACCAA+GGG | + | chr4.2:34838942-34838961 | None:intergenic | 60.0% | |
| TTTGCCTCCCACGCCTACCA+AGG | + | chr4.2:34838943-34838962 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34837743 | 34840155 | 34837743 | ID=MS.gene90982 |
| chr4.2 | mRNA | 34837743 | 34840155 | 34837743 | ID=MS.gene90982.t1;Parent=MS.gene90982 |
| chr4.2 | exon | 34840037 | 34840155 | 34840037 | ID=MS.gene90982.t1.exon1;Parent=MS.gene90982.t1 |
| chr4.2 | CDS | 34840037 | 34840155 | 34840037 | ID=cds.MS.gene90982.t1;Parent=MS.gene90982.t1 |
| chr4.2 | exon | 34839605 | 34839788 | 34839605 | ID=MS.gene90982.t1.exon2;Parent=MS.gene90982.t1 |
| chr4.2 | CDS | 34839605 | 34839788 | 34839605 | ID=cds.MS.gene90982.t1;Parent=MS.gene90982.t1 |
| chr4.2 | exon | 34839390 | 34839487 | 34839390 | ID=MS.gene90982.t1.exon3;Parent=MS.gene90982.t1 |
| chr4.2 | CDS | 34839390 | 34839487 | 34839390 | ID=cds.MS.gene90982.t1;Parent=MS.gene90982.t1 |
| chr4.2 | exon | 34838107 | 34838314 | 34838107 | ID=MS.gene90982.t1.exon4;Parent=MS.gene90982.t1 |
| chr4.2 | CDS | 34838107 | 34838314 | 34838107 | ID=cds.MS.gene90982.t1;Parent=MS.gene90982.t1 |
| chr4.2 | exon | 34837743 | 34838006 | 34837743 | ID=MS.gene90982.t1.exon5;Parent=MS.gene90982.t1 |
| chr4.2 | CDS | 34837743 | 34838006 | 34837743 | ID=cds.MS.gene90982.t1;Parent=MS.gene90982.t1 |
| Gene Sequence |
| Protein sequence |
