Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91057.t1 | XP_013447857.1 | 96.1 | 875 | 30 | 2 | 1 | 874 | 1 | 872 | 0.00E+00 | 1522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91057.t1 | Q9C5S1 | 49.1 | 880 | 346 | 17 | 1 | 874 | 1 | 784 | 4.0e-207 | 723.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91057.t1 | A0A072TWN9 | 96.1 | 875 | 30 | 2 | 1 | 874 | 1 | 872 | 0.0e+00 | 1522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene91057 | 0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene051835 | MS.gene91057 | 0.818981 | 1.48E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91057.t1 | MTR_7g023250 | 96.571 | 875 | 26 | 2 | 1 | 874 | 1 | 872 | 0.0 | 1719 |
| MS.gene91057.t1 | MTR_3g086540 | 59.145 | 421 | 135 | 4 | 88 | 508 | 51 | 434 | 9.81e-170 | 507 |
| MS.gene91057.t1 | MTR_8g089710 | 55.870 | 460 | 137 | 6 | 57 | 494 | 33 | 448 | 3.92e-167 | 502 |
| MS.gene91057.t1 | MTR_4g117170 | 31.944 | 144 | 97 | 1 | 178 | 321 | 40 | 182 | 1.55e-19 | 87.8 |
| MS.gene91057.t1 | MTR_8g100000 | 34.483 | 145 | 90 | 2 | 177 | 317 | 690 | 833 | 4.42e-17 | 86.7 |
| MS.gene91057.t1 | MTR_3g498735 | 33.103 | 145 | 92 | 2 | 177 | 317 | 676 | 819 | 5.32e-17 | 86.7 |
| MS.gene91057.t1 | MTR_8g100000 | 34.483 | 145 | 90 | 2 | 177 | 317 | 732 | 875 | 5.77e-17 | 86.7 |
| MS.gene91057.t1 | MTR_5g084720 | 31.852 | 135 | 85 | 2 | 181 | 315 | 53 | 180 | 7.03e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91057.t1 | AT3G06110 | 34.028 | 144 | 94 | 1 | 174 | 317 | 23 | 165 | 1.87e-23 | 98.6 |
| MS.gene91057.t1 | AT3G06110 | 34.028 | 144 | 94 | 1 | 174 | 317 | 23 | 165 | 1.87e-23 | 98.6 |
| MS.gene91057.t1 | AT3G23610 | 32.653 | 147 | 98 | 1 | 173 | 319 | 48 | 193 | 3.92e-22 | 95.9 |
| MS.gene91057.t1 | AT3G23610 | 32.414 | 145 | 97 | 1 | 173 | 317 | 48 | 191 | 3.64e-21 | 92.8 |
| MS.gene91057.t1 | AT3G23610 | 32.639 | 144 | 96 | 1 | 173 | 316 | 48 | 190 | 6.12e-21 | 92.0 |
| MS.gene91057.t1 | AT3G23610 | 32.639 | 144 | 96 | 1 | 173 | 316 | 48 | 190 | 6.32e-21 | 92.0 |
| MS.gene91057.t1 | AT3G23610 | 32.639 | 144 | 96 | 1 | 173 | 316 | 48 | 190 | 1.20e-20 | 92.0 |
| MS.gene91057.t1 | AT3G06110 | 32.414 | 145 | 85 | 3 | 174 | 317 | 23 | 155 | 1.49e-19 | 87.0 |
| MS.gene91057.t1 | AT5G23720 | 27.826 | 230 | 141 | 5 | 92 | 317 | 631 | 839 | 1.24e-16 | 85.5 |
| MS.gene91057.t1 | AT5G23720 | 27.826 | 230 | 141 | 5 | 92 | 317 | 556 | 764 | 1.31e-16 | 85.1 |
| MS.gene91057.t1 | AT5G23720 | 27.826 | 230 | 141 | 5 | 92 | 317 | 640 | 848 | 1.34e-16 | 85.5 |
| MS.gene91057.t1 | AT2G04550 | 32.847 | 137 | 81 | 3 | 181 | 315 | 56 | 183 | 2.81e-12 | 68.2 |
| MS.gene91057.t1 | AT2G04550 | 34.711 | 121 | 68 | 3 | 181 | 299 | 56 | 167 | 5.88e-12 | 65.5 |
Find 202 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTCTGCTTTGGATTCT+AGG | 0.128713 | 7.4:-78579252 | MS.gene91057:CDS |
| ACTGGTTGAGAACTATAATT+TGG | 0.250958 | 7.4:+78578515 | None:intergenic |
| CAAATTCCCGGAAAATGTTT+TGG | 0.263012 | 7.4:-78580263 | MS.gene91057:CDS |
| TTGATTACTTTGAGGATGTT+AGG | 0.266289 | 7.4:-78579573 | MS.gene91057:CDS |
| CCTTCAGTAGATAGTTTATC+TGG | 0.276754 | 7.4:-78578104 | MS.gene91057:CDS |
| AGGTATTGCTGATCCGAATA+TGG | 0.280862 | 7.4:-78579419 | MS.gene91057:CDS |
| TTCCTTCGGCGTTATATGTT+TGG | 0.283380 | 7.4:-78579210 | MS.gene91057:CDS |
| GTGAGGAACCACGTTCGTTT+TGG | 0.288504 | 7.4:-78579081 | MS.gene91057:CDS |
| CCTCTCCCACCAGGAGTAAT+AGG | 0.297230 | 7.4:+78579970 | None:intergenic |
| GGCATTTGGTGCAAATCATT+TGG | 0.302469 | 7.4:-78577973 | MS.gene91057:CDS |
| AATTTCACCGATCCGAATTC+CGG | 0.317202 | 7.4:-78580177 | MS.gene91057:CDS |
| AGGATTTGCGGCGGCGGAAC+GGG | 0.335561 | 7.4:+78580218 | None:intergenic |
| CCACCATTATTCCTACTATC+AGG | 0.342012 | 7.4:+78579841 | None:intergenic |
| GGATCCGTCTTTGTCTGCTT+TGG | 0.346747 | 7.4:-78579260 | MS.gene91057:CDS |
| TTGTTATTGCTTATCTTATG+TGG | 0.354511 | 7.4:-78579492 | MS.gene91057:CDS |
| GCAGTTGACTGGAACAAAAT+TGG | 0.360784 | 7.4:-78577807 | MS.gene91057:CDS |
| AGGATCGATTATCATGATTA+AGG | 0.361414 | 7.4:-78579107 | MS.gene91057:CDS |
| GATAGACAGCCTGATTTGAT+TGG | 0.364391 | 7.4:-78577831 | MS.gene91057:CDS |
| CATGCCACCTTTCAAATTCC+CGG | 0.370480 | 7.4:-78580275 | MS.gene91057:CDS |
| GATAGGGAGTTCTTTCAAAC+TGG | 0.379216 | 7.4:-78577880 | MS.gene91057:CDS |
| CGTTCAGCAATGGAAGTTGA+TGG | 0.379234 | 7.4:+78578413 | None:intergenic |
| GCATTTGGTGCAAATCATTT+GGG | 0.381223 | 7.4:-78577972 | MS.gene91057:CDS |
| GCTCTTTGTTGAGAATGTAT+AGG | 0.383451 | 7.4:-78579336 | MS.gene91057:CDS |
| TTAGAAAAGATTGAGGCATT+TGG | 0.383736 | 7.4:-78577987 | MS.gene91057:CDS |
| CTCCAACTACTCTCTCTTGC+AGG | 0.386094 | 7.4:+78578860 | None:intergenic |
| TTGCCTTTGATGGACATGTC+TGG | 0.387446 | 7.4:-78579040 | MS.gene91057:CDS |
| CGCAAATCCTTCCGGTGAAC+CGG | 0.393028 | 7.4:-78580205 | MS.gene91057:CDS |
| AAAACGAGAGAGGAAGAATC+TGG | 0.393317 | 7.4:+78578593 | None:intergenic |
| CGACTGGAAGGAATAGTTGA+TGG | 0.394521 | 7.4:+78578323 | None:intergenic |
| ATTGCTAGAATCAGAAGAAA+TGG | 0.397572 | 7.4:+78578643 | None:intergenic |
| AACTGGATGCTTCACATGTT+CGG | 0.398281 | 7.4:-78577863 | MS.gene91057:CDS |
| AATCCTGATAGTAGGAATAA+TGG | 0.400129 | 7.4:-78579844 | MS.gene91057:CDS |
| AGTAATAGTAGTAATAATAA+TGG | 0.400503 | 7.4:-78579910 | MS.gene91057:CDS |
| GAATCAGAAGAAATGGAATC+TGG | 0.401454 | 7.4:+78578650 | None:intergenic |
| TTTGTCTGCTTTGGATTCTA+GGG | 0.403725 | 7.4:-78579251 | MS.gene91057:CDS |
| ATAGACAGCCTGATTTGATT+GGG | 0.406982 | 7.4:-78577830 | MS.gene91057:CDS |
| CCACCACCACTGCCGGAATT+CGG | 0.408779 | 7.4:+78580165 | None:intergenic |
| ATTTGATTGGGGCAGTTGAC+TGG | 0.410264 | 7.4:-78577818 | MS.gene91057:CDS |
| TACTCTCTCTTGCAGGAAGA+TGG | 0.421748 | 7.4:+78578867 | None:intergenic |
| AAGGATTTGCGGCGGCGGAA+CGG | 0.421804 | 7.4:+78580217 | None:intergenic |
| GACGGATCCGTCAACATCTT+CGG | 0.422116 | 7.4:+78579274 | None:intergenic |
| TGATTACTTTGAGGATGTTA+GGG | 0.423136 | 7.4:-78579572 | MS.gene91057:CDS |
| TGTGCCTCCGTTTGCATCAT+CGG | 0.425195 | 7.4:-78578906 | MS.gene91057:CDS |
| TGCTGTGACCTTGGCGTCAA+AGG | 0.428961 | 7.4:+78580111 | None:intergenic |
| GGATCGGTGAAATTCGATTC+CGG | 0.429389 | 7.4:+78580186 | None:intergenic |
| AAGCGAGTTCCGATGATATC+GGG | 0.431247 | 7.4:-78580008 | MS.gene91057:CDS |
| AGTTGTTGCAGTGTCAGAAA+AGG | 0.431769 | 7.4:-78579384 | MS.gene91057:CDS |
| TCCGCCGCCGCAAATCCTTC+CGG | 0.433567 | 7.4:-78580213 | MS.gene91057:CDS |
| CCCTTGGTAATGATAACTTA+GGG | 0.438101 | 7.4:+78578786 | None:intergenic |
| AGAATAATAATCCTGATAGT+AGG | 0.438363 | 7.4:-78579852 | MS.gene91057:CDS |
| TTACAATTCTGCTGTGACCT+TGG | 0.441011 | 7.4:+78580102 | None:intergenic |
| ATATCATCGGAACTCGCTTT+CGG | 0.442175 | 7.4:+78580012 | None:intergenic |
| AAAGCGAGTTCCGATGATAT+CGG | 0.445061 | 7.4:-78580009 | MS.gene91057:CDS |
| CGGTTCACCGGAAGGATTTG+CGG | 0.446551 | 7.4:+78580206 | None:intergenic |
| GTTGCTGAACATGTTTATCT+TGG | 0.448416 | 7.4:-78579769 | MS.gene91057:CDS |
| TGACAAGCGAAACCCATATT+CGG | 0.448761 | 7.4:+78579406 | None:intergenic |
| CCGAATTCCGGCAGTGGTGG+TGG | 0.450748 | 7.4:-78580165 | MS.gene91057:CDS |
| GGTATTGCTGATCCGAATAT+GGG | 0.453348 | 7.4:-78579418 | MS.gene91057:CDS |
| GACCTTGGCGTCAAAGGCGG+TGG | 0.453467 | 7.4:+78580117 | None:intergenic |
| ACTCCTGGTGGGAGAGGTAA+TGG | 0.460370 | 7.4:-78579964 | MS.gene91057:CDS |
| GTGTTTGTTCATTGTTGTCA+AGG | 0.460704 | 7.4:-78579535 | MS.gene91057:CDS |
| TGCCTTTGATGGACATGTCT+GGG | 0.461962 | 7.4:-78579039 | MS.gene91057:CDS |
| TTCCTGCAAGAGAGAGTAGT+TGG | 0.463033 | 7.4:-78578862 | MS.gene91057:CDS |
| TCAACTGCCCCAATCAAATC+AGG | 0.464657 | 7.4:+78577822 | None:intergenic |
| TAAGTATTGTGCGGCTATCA+TGG | 0.465295 | 7.4:-78579182 | MS.gene91057:CDS |
| GAGGATGTTAGGGAAAAGAA+TGG | 0.472600 | 7.4:-78579562 | MS.gene91057:CDS |
| GTTTATTGTGCACATTCCTT+CGG | 0.473183 | 7.4:-78579224 | MS.gene91057:CDS |
| TGATGTGTTTGATTACTTTG+AGG | 0.476178 | 7.4:-78579581 | MS.gene91057:CDS |
| CTCCACCGCCTTTGACGCCA+AGG | 0.476639 | 7.4:-78580119 | MS.gene91057:CDS |
| ACCGGAAGGATTTGCGGCGG+CGG | 0.476669 | 7.4:+78580212 | None:intergenic |
| GAAATTCGATTCCGGTTCAC+CGG | 0.477328 | 7.4:+78580194 | None:intergenic |
| GCTGAACATGTTTATCTTGG+TGG | 0.480796 | 7.4:-78579766 | MS.gene91057:CDS |
| CTTGGCGTCAAAGGCGGTGG+AGG | 0.482350 | 7.4:+78580120 | None:intergenic |
| AGCCGCTTTCGATTGCTCGC+CGG | 0.483522 | 7.4:-78580050 | MS.gene91057:CDS |
| TTCGATTCCGGTTCACCGGA+AGG | 0.488338 | 7.4:+78580198 | None:intergenic |
| ACCGATCCGAATTCCGGCAG+TGG | 0.489853 | 7.4:-78580171 | MS.gene91057:CDS |
| AACAAAGAGCTTGGACTAAG+TGG | 0.490105 | 7.4:+78579349 | None:intergenic |
| ACCCTTGGTAATGATAACTT+AGG | 0.490670 | 7.4:+78578785 | None:intergenic |
| GAGAGAAACTCCTTCACATC+AGG | 0.491036 | 7.4:+78578812 | None:intergenic |
| AGAGGTAATGGTAATGGTAA+TGG | 0.493942 | 7.4:-78579952 | MS.gene91057:CDS |
| TACATTCTCAACAAAGAGCT+TGG | 0.497832 | 7.4:+78579340 | None:intergenic |
| TCGGCGTTATATGTTTGGAT+TGG | 0.499633 | 7.4:-78579205 | MS.gene91057:CDS |
| CTTGCATGCATATGTATGCT+TGG | 0.499660 | 7.4:+78577921 | None:intergenic |
| CGGGAATTTGAAAGGTGGCA+TGG | 0.502986 | 7.4:+78580276 | None:intergenic |
| GCAATGAACCATCAGTTCTC+AGG | 0.505417 | 7.4:-78578139 | MS.gene91057:CDS |
| GTTGTTGCAGTGTCAGAAAA+GGG | 0.508525 | 7.4:-78579383 | MS.gene91057:CDS |
| CCCACGCTATCAGCAATGTC+TGG | 0.508926 | 7.4:+78578164 | None:intergenic |
| TGTTTGTTCATTGTTGTCAA+GGG | 0.515447 | 7.4:-78579534 | MS.gene91057:CDS |
| ACTCTCTCTTGCAGGAAGAT+GGG | 0.518329 | 7.4:+78578868 | None:intergenic |
| TGCAAATCATTTGGGTTCAG+AGG | 0.518719 | 7.4:-78577964 | MS.gene91057:CDS |
| GAGCAATCGAAAGCGGCTGA+AGG | 0.519600 | 7.4:+78580055 | None:intergenic |
| AAGGGATGCTAGAGGGGCTG+CGG | 0.520478 | 7.4:-78579158 | MS.gene91057:CDS |
| TCTTGTTCCGAAGATGTTGA+CGG | 0.520562 | 7.4:-78579281 | MS.gene91057:CDS |
| TCGAATCGATTTGGCATGGT+GGG | 0.521287 | 7.4:-78580318 | None:intergenic |
| CCCTAAGTTATCATTACCAA+GGG | 0.521837 | 7.4:-78578786 | MS.gene91057:CDS |
| ATGGAATCTGGAGAAACAAA+AGG | 0.523568 | 7.4:+78578662 | None:intergenic |
| ATCGAAAGCGGCTGAAGGGG+CGG | 0.525187 | 7.4:+78580060 | None:intergenic |
| TACAAAGTTTAGTATATCGC+TGG | 0.526719 | 7.4:-78578016 | MS.gene91057:CDS |
| TTGAAGTCTGCATCATCAAA+GGG | 0.527606 | 7.4:-78578074 | MS.gene91057:CDS |
| AGCAATCGAAAGCGGCTGAA+GGG | 0.531267 | 7.4:+78580056 | None:intergenic |
| TTTGAAGTCTGCATCATCAA+AGG | 0.533322 | 7.4:-78578075 | MS.gene91057:CDS |
| GGGCTGCGGATCAGATTGTC+CGG | 0.533827 | 7.4:-78579144 | MS.gene91057:CDS |
| GCAATGTCTGGACATGAAGC+TGG | 0.534202 | 7.4:+78578176 | None:intergenic |
| AAACGAGAGAGGAAGAATCT+GGG | 0.536025 | 7.4:+78578594 | None:intergenic |
| TCATGGAAAGGGATGCTAGA+GGG | 0.536253 | 7.4:-78579165 | MS.gene91057:CDS |
| CCACAACCACCTATTACTCC+TGG | 0.537279 | 7.4:-78579979 | MS.gene91057:CDS |
| AGGATGTTAGGGAAAAGAAT+GGG | 0.538950 | 7.4:-78579561 | MS.gene91057:CDS |
| GCAATCGAAAGCGGCTGAAG+GGG | 0.539990 | 7.4:+78580057 | None:intergenic |
| ATCAACTATTCCTTCCAGTC+GGG | 0.542142 | 7.4:-78578321 | MS.gene91057:CDS |
| CCTATTACTCCTGGTGGGAG+AGG | 0.542296 | 7.4:-78579970 | MS.gene91057:CDS |
| AAGGTCACAGCAGAATTGTA+AGG | 0.544690 | 7.4:-78580100 | MS.gene91057:CDS |
| GTGGTGGAGATAATACTAAC+CGG | 0.548066 | 7.4:-78580149 | MS.gene91057:CDS |
| GCTTATCTTATGTGGAGGGA+AGG | 0.549467 | 7.4:-78579484 | MS.gene91057:CDS |
| ATGGAATCTGAATAAACCCT+TGG | 0.549789 | 7.4:+78578770 | None:intergenic |
| ATTATCTCCACCACCACTGC+CGG | 0.550629 | 7.4:+78580158 | None:intergenic |
| ACTACCTCTGCGTTCAGCAA+TGG | 0.550884 | 7.4:+78578403 | None:intergenic |
| GGTGGGAGAGGTAATGGTAA+TGG | 0.552609 | 7.4:-78579958 | MS.gene91057:CDS |
| TCCAGACATTGCTGATAGCG+TGG | 0.553859 | 7.4:-78578165 | MS.gene91057:CDS |
| ATTTGCGGCGGCGGAACGGG+CGG | 0.555854 | 7.4:+78580221 | None:intergenic |
| GTTGACAACATTGACGGTGA+TGG | 0.555931 | 7.4:+78578716 | None:intergenic |
| GATCCGAATTCCGGCAGTGG+TGG | 0.558814 | 7.4:-78580168 | MS.gene91057:CDS |
| AGAAACAAAAGGAGGTGAAG+AGG | 0.559901 | 7.4:+78578673 | None:intergenic |
| ATCCTTGCACTCTCTCATAC+CGG | 0.560757 | 7.4:+78579125 | None:intergenic |
| CTCCCAGACATGTCCATCAA+AGG | 0.564021 | 7.4:+78579037 | None:intergenic |
| GAGTCAGTTGACAACATTGA+CGG | 0.564336 | 7.4:+78578710 | None:intergenic |
| TTGTCTGCTTTGGATTCTAG+GGG | 0.565145 | 7.4:-78579250 | MS.gene91057:CDS |
| AAGGCGGTGGAGGAAATCTC+CGG | 0.565206 | 7.4:+78580130 | None:intergenic |
| TCATTCTCCGATGATGCAAA+CGG | 0.566987 | 7.4:+78578899 | None:intergenic |
| AAATCACCTTTAAAATACTC+AGG | 0.568354 | 7.4:+78579664 | None:intergenic |
| ACACAGTTCCTGAGAACTGA+TGG | 0.568539 | 7.4:+78578131 | None:intergenic |
| AAATTCCTGTCCTGATGTGA+AGG | 0.569689 | 7.4:-78578822 | MS.gene91057:CDS |
| GCCAAGTTTAGAAAAGATTG+AGG | 0.571378 | 7.4:-78577994 | MS.gene91057:CDS |
| CTTATCTTATGTGGAGGGAA+GGG | 0.572287 | 7.4:-78579483 | MS.gene91057:CDS |
| CAAAGATGAAGATACTGAGA+CGG | 0.574070 | 7.4:+78578565 | None:intergenic |
| CATGGAAAGGGATGCTAGAG+GGG | 0.574678 | 7.4:-78579164 | MS.gene91057:CDS |
| GCATCCACTTTCCTCTCACC+AGG | 0.576849 | 7.4:+78578977 | None:intergenic |
| CCAGGAGTAATAGGTGGTTG+TGG | 0.578018 | 7.4:+78579979 | None:intergenic |
| ATTCCTTCCAGTCGGGAACA+TGG | 0.579148 | 7.4:-78578314 | MS.gene91057:CDS |
| AAACTCCTTCACATCAGGAC+AGG | 0.581663 | 7.4:+78578817 | None:intergenic |
| TGGCCACTCCCCGATATCAT+CGG | 0.582916 | 7.4:+78579999 | None:intergenic |
| TTGTGCGGCTATCATGGAAA+GGG | 0.583248 | 7.4:-78579176 | MS.gene91057:CDS |
| ATCTTCGGAACAAGATGCAA+AGG | 0.584565 | 7.4:+78579289 | None:intergenic |
| TTATTGCTTATCTTATGTGG+AGG | 0.584840 | 7.4:-78579489 | MS.gene91057:CDS |
| CATCAACTATTCCTTCCAGT+CGG | 0.585320 | 7.4:-78578322 | MS.gene91057:CDS |
| CCCCTAAGTTATCATTACCA+AGG | 0.586855 | 7.4:-78578787 | MS.gene91057:CDS |
| GTAGTAATAATAATGGTGAA+AGG | 0.588930 | 7.4:-78579903 | MS.gene91057:CDS |
| CTCGCCGGAGTTTAGATGAG+TGG | 0.589080 | 7.4:-78580035 | MS.gene91057:CDS |
| ACAAGATGCAAAGGATCATA+CGG | 0.589777 | 7.4:+78579298 | None:intergenic |
| ATTGTTGTCAAGGGGTGTCG+AGG | 0.590797 | 7.4:-78579525 | MS.gene91057:CDS |
| CCAGATAAACTATCTACTGA+AGG | 0.592515 | 7.4:+78578104 | None:intergenic |
| TCGATTATCATGATTAAGGA+AGG | 0.594375 | 7.4:-78579103 | MS.gene91057:CDS |
| TTCAGAAAAGCCATCGTGGG+AGG | 0.595501 | 7.4:-78578932 | MS.gene91057:CDS |
| TATTGCTTATCTTATGTGGA+GGG | 0.595972 | 7.4:-78579488 | MS.gene91057:CDS |
| GTTTGTTCATTGTTGTCAAG+GGG | 0.598014 | 7.4:-78579533 | MS.gene91057:CDS |
| GAATCCAAAGCAGACAAAGA+CGG | 0.598188 | 7.4:+78579256 | None:intergenic |
| GTCCGGTATGAGAGAGTGCA+AGG | 0.602354 | 7.4:-78579127 | MS.gene91057:CDS |
| AAAGGATCATACGGCGAGTG+AGG | 0.606806 | 7.4:+78579307 | None:intergenic |
| CAGTTTGTGAAGGCGGCGAG+AGG | 0.607174 | 7.4:-78579439 | MS.gene91057:CDS |
| ACACCATGTTCCCGACTGGA+AGG | 0.607395 | 7.4:+78578311 | None:intergenic |
| TTACCATTACCTCTCCCACC+AGG | 0.608019 | 7.4:+78579961 | None:intergenic |
| TTTGTGTTATCATTCATGAG+AGG | 0.610912 | 7.4:+78578359 | None:intergenic |
| ACTGTGGATATCTGTACAGT+TGG | 0.612503 | 7.4:+78578490 | None:intergenic |
| ATTGTGCGGCTATCATGGAA+AGG | 0.612909 | 7.4:-78579177 | MS.gene91057:CDS |
| TGTGACCTTGGCGTCAAAGG+CGG | 0.613053 | 7.4:+78580114 | None:intergenic |
| AAAGATGAAGATACTGAGAC+GGG | 0.615809 | 7.4:+78578566 | None:intergenic |
| ACCACTGCCGGAATTCGGAT+CGG | 0.616777 | 7.4:+78580170 | None:intergenic |
| AACGAGAGAGGAAGAATCTG+GGG | 0.619918 | 7.4:+78578595 | None:intergenic |
| TCAAAGGGAGATTACGAGAG+TGG | 0.621777 | 7.4:-78578059 | MS.gene91057:CDS |
| CTCCGGCGAGCAATCGAAAG+CGG | 0.624516 | 7.4:+78580048 | None:intergenic |
| TATCATGATTAAGGAAGGTG+AGG | 0.626606 | 7.4:-78579098 | MS.gene91057:CDS |
| TAGACAGCCTGATTTGATTG+GGG | 0.632885 | 7.4:-78577829 | MS.gene91057:CDS |
| ATCCAAACATATAACGCCGA+AGG | 0.633669 | 7.4:+78579208 | None:intergenic |
| CCTGATAGTAGGAATAATGG+TGG | 0.635478 | 7.4:-78579841 | MS.gene91057:CDS |
| AGCGAGTTCCGATGATATCG+GGG | 0.636424 | 7.4:-78580007 | MS.gene91057:CDS |
| AAGAACACCATGTTCCCGAC+TGG | 0.638498 | 7.4:+78578307 | None:intergenic |
| ACAATGAACTCAGCAGAGCA+AGG | 0.638990 | 7.4:+78576877 | None:intergenic |
| GTTCCGATGATATCGGGGAG+TGG | 0.639001 | 7.4:-78580002 | MS.gene91057:CDS |
| TTCACCGGAAGGATTTGCGG+CGG | 0.641408 | 7.4:+78580209 | None:intergenic |
| CAACCACCTATTACTCCTGG+TGG | 0.643523 | 7.4:-78579976 | MS.gene91057:CDS |
| CCTTGGTAATGATAACTTAG+GGG | 0.645677 | 7.4:+78578787 | None:intergenic |
| AACCACCTATTACTCCTGGT+GGG | 0.645942 | 7.4:-78579975 | MS.gene91057:CDS |
| ATACTAGTAATATCCTCACT+AGG | 0.646717 | 7.4:+78579610 | None:intergenic |
| GTTACAAGATAGTCCTAGTG+AGG | 0.647978 | 7.4:-78579623 | MS.gene91057:CDS |
| CCAGACATTGCTGATAGCGT+GGG | 0.649233 | 7.4:-78578164 | MS.gene91057:CDS |
| ATGTTAGGGAAAAGAATGGG+AGG | 0.650783 | 7.4:-78579558 | MS.gene91057:CDS |
| TGTTAGGGAAAAGAATGGGA+GGG | 0.656791 | 7.4:-78579557 | MS.gene91057:CDS |
| CTCCCACCAGGAGTAATAGG+TGG | 0.667076 | 7.4:+78579973 | None:intergenic |
| GCAGATCGAGAACATAGATG+TGG | 0.667316 | 7.4:+78578455 | None:intergenic |
| ATATCTGTACAGTTGGACAC+TGG | 0.675328 | 7.4:+78578497 | None:intergenic |
| ATCATGGAAAGGGATGCTAG+AGG | 0.675923 | 7.4:-78579166 | MS.gene91057:CDS |
| ACTTCCATTGCTGAACGCAG+AGG | 0.680053 | 7.4:-78578407 | MS.gene91057:CDS |
| AGCAGAGCAAGGAACTCTTG+TGG | 0.680964 | 7.4:+78576888 | None:intergenic |
| GAATCTGGAGAAACAAAAGG+AGG | 0.683570 | 7.4:+78578665 | None:intergenic |
| TTCTCCGATGATGCAAACGG+AGG | 0.687515 | 7.4:+78578902 | None:intergenic |
| AAAGCATCCCAAAACGAACG+TGG | 0.693995 | 7.4:+78579073 | None:intergenic |
| AGATGTATGAATGCACAACA+TGG | 0.702134 | 7.4:+78578751 | None:intergenic |
| TCGGCCACTCATCTAAACTC+CGG | 0.702273 | 7.4:+78580031 | None:intergenic |
| AGGCACAAAACCTCCCACGA+TGG | 0.704213 | 7.4:+78578922 | None:intergenic |
| GCCGCACAATACAGTCACCA+AGG | 0.707837 | 7.4:-78577757 | MS.gene91057:intron |
| TTGGATTGGTAAGTATTGTG+CGG | 0.708780 | 7.4:-78579191 | MS.gene91057:CDS |
| ACCTTGGTGACTGTATTGTG+CGG | 0.749659 | 7.4:+78577756 | None:intergenic |
| GTGGCGATAACTTGACACTG+TGG | 0.783804 | 7.4:+78578474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAAAATGAATG+TGG | + | chr7.4:78579969-78579988 | None:intergenic | 10.0% |
| !! | CATTTATATTATATATCAAA+AGG | + | chr7.4:78579525-78579544 | None:intergenic | 10.0% |
| !!! | CTTTTGATATATAATATAAA+TGG | - | chr7.4:78579523-78579542 | MS.gene91057:CDS | 10.0% |
| !! | AAAGAAAAAACTCAAAAAAA+AGG | - | chr7.4:78579993-78580012 | MS.gene91057:CDS | 15.0% |
| !! | AGTAATAGTAGTAATAATAA+TGG | - | chr7.4:78577268-78577287 | MS.gene91057:intron | 15.0% |
| !! | ATTATAACATAAATCAACAA+AGG | + | chr7.4:78580139-78580158 | None:intergenic | 15.0% |
| !!! | GATTGATAATTTAATATAAG+AGG | - | chr7.4:78579668-78579687 | MS.gene91057:CDS | 15.0% |
| !!! | TTTCATTTTTTCTATTTTCA+CGG | - | chr7.4:78580164-78580183 | MS.gene91057:CDS | 15.0% |
| !!! | ATGAAGTATTAATGCTAAAT+AGG | + | chr7.4:78579715-78579734 | None:intergenic | 20.0% |
| !!! | TGAAGTATTAATGCTAAATA+GGG | + | chr7.4:78579714-78579733 | None:intergenic | 20.0% |
| ! | AAAAAAATGAATGTGGTTTG+TGG | + | chr7.4:78579962-78579981 | None:intergenic | 25.0% |
| ! | AACTAAACCTATTGTAAGTT+TGG | - | chr7.4:78579867-78579886 | MS.gene91057:CDS | 25.0% |
| ! | ACTAAACCTATTGTAAGTTT+GGG | - | chr7.4:78579868-78579887 | MS.gene91057:CDS | 25.0% |
| ! | AGAATAATAATCCTGATAGT+AGG | - | chr7.4:78577326-78577345 | MS.gene91057:intron | 25.0% |
| ! | GATAAATACATTCCAAAAGA+AGG | + | chr7.4:78579940-78579959 | None:intergenic | 25.0% |
| ! | GCATTAATACTTCATATTGA+AGG | - | chr7.4:78579720-78579739 | MS.gene91057:CDS | 25.0% |
| ! | GTAGTAATAATAATGGTGAA+AGG | - | chr7.4:78577275-78577294 | MS.gene91057:intron | 25.0% |
| !! | AAACATTGCAGTATTTTCTT+TGG | - | chr7.4:78579606-78579625 | MS.gene91057:CDS | 25.0% |
| !! | AAAGAGATACTTCCTATTTT+GGG | + | chr7.4:78579634-78579653 | None:intergenic | 25.0% |
| !! | AAATTGATGATCAGCTTAAA+TGG | - | chr7.4:78580018-78580037 | MS.gene91057:CDS | 25.0% |
| !! | AACGTTTTGTATATTTGGAT+AGG | - | chr7.4:78579281-78579300 | MS.gene91057:CDS | 25.0% |
| !! | ACGTTTTGTATATTTGGATA+GGG | - | chr7.4:78579282-78579301 | MS.gene91057:CDS | 25.0% |
| !! | AGAAAATACTGCAATGTTTT+TGG | + | chr7.4:78579605-78579624 | None:intergenic | 25.0% |
| !! | CAAGAAACGTTTTGTATATT+TGG | - | chr7.4:78579276-78579295 | MS.gene91057:CDS | 25.0% |
| !! | TTAAAGGTGATTTTGTGTAT+AGG | - | chr7.4:78577524-78577543 | MS.gene91057:intron | 25.0% |
| !! | TTGTTATTGCTTATCTTATG+TGG | - | chr7.4:78577686-78577705 | MS.gene91057:intron | 25.0% |
| !!! | AAATCACCTTTAAAATACTC+AGG | + | chr7.4:78577517-78577536 | None:intergenic | 25.0% |
| !!! | CATTCACCTTTTAAGATTTT+TGG | - | chr7.4:78579910-78579929 | MS.gene91057:CDS | 25.0% |
| AATCCTGATAGTAGGAATAA+TGG | - | chr7.4:78577334-78577353 | MS.gene91057:intron | 30.0% | |
| ACTGCTAATGTAAAAAATGG+AGG | - | chr7.4:78578954-78578973 | MS.gene91057:CDS | 30.0% | |
| ACTGGTTGAGAACTATAATT+TGG | + | chr7.4:78578666-78578685 | None:intergenic | 30.0% | |
| AGGATCGATTATCATGATTA+AGG | - | chr7.4:78578071-78578090 | MS.gene91057:CDS | 30.0% | |
| ATACTAGTAATATCCTCACT+AGG | + | chr7.4:78577571-78577590 | None:intergenic | 30.0% | |
| ATTGCTAGAATCAGAAGAAA+TGG | + | chr7.4:78578538-78578557 | None:intergenic | 30.0% | |
| GATGCAAATTGATTATAGTG+TGG | + | chr7.4:78579490-78579509 | None:intergenic | 30.0% | |
| TACAAAGTTTAGTATATCGC+TGG | - | chr7.4:78579162-78579181 | MS.gene91057:CDS | 30.0% | |
| TATTGCTTATCTTATGTGGA+GGG | - | chr7.4:78577690-78577709 | MS.gene91057:intron | 30.0% | |
| TCCACTGCTAATGTAAAAAA+TGG | - | chr7.4:78578951-78578970 | MS.gene91057:CDS | 30.0% | |
| TCGATTATCATGATTAAGGA+AGG | - | chr7.4:78578075-78578094 | MS.gene91057:CDS | 30.0% | |
| TGATGTGTTTGATTACTTTG+AGG | - | chr7.4:78577597-78577616 | MS.gene91057:intron | 30.0% | |
| TGTTGTATAAATGCACGAAA+TGG | - | chr7.4:78579556-78579575 | MS.gene91057:CDS | 30.0% | |
| TGTTTGTTCATTGTTGTCAA+GGG | - | chr7.4:78577644-78577663 | MS.gene91057:intron | 30.0% | |
| TTATTGCTTATCTTATGTGG+AGG | - | chr7.4:78577689-78577708 | MS.gene91057:intron | 30.0% | |
| TTTGTGTTATCATTCATGAG+AGG | + | chr7.4:78578822-78578841 | None:intergenic | 30.0% | |
| ! | AAATAATGGAATACATGTGC+CGG | + | chr7.4:78579773-78579792 | None:intergenic | 30.0% |
| ! | ATTTTGTGTATAGGACTTTG+TGG | - | chr7.4:78577533-78577552 | MS.gene91057:intron | 30.0% |
| ! | GAAAGAGATACTTCCTATTT+TGG | + | chr7.4:78579635-78579654 | None:intergenic | 30.0% |
| ! | TCAAGTGTTAGAATTTTTCC+TGG | - | chr7.4:78578183-78578202 | MS.gene91057:CDS | 30.0% |
| ! | TGATTACTTTGAGGATGTTA+GGG | - | chr7.4:78577606-78577625 | MS.gene91057:intron | 30.0% |
| ! | TTAGAAAAGATTGAGGCATT+TGG | - | chr7.4:78579191-78579210 | MS.gene91057:CDS | 30.0% |
| ! | TTCAAAGTTTTTGCCTTTGA+TGG | - | chr7.4:78578128-78578147 | MS.gene91057:CDS | 30.0% |
| ! | TTGATTACTTTGAGGATGTT+AGG | - | chr7.4:78577605-78577624 | MS.gene91057:intron | 30.0% |
| !! | ACTCATGTTTTGAATTGTGT+TGG | - | chr7.4:78577481-78577500 | MS.gene91057:intron | 30.0% |
| !! | AGAGAGATTTTGAAAAGGAA+TGG | - | chr7.4:78577454-78577473 | MS.gene91057:intron | 30.0% |
| !! | AGAGTAGTTGGAGTATTTTA+AGG | - | chr7.4:78578328-78578347 | MS.gene91057:CDS | 30.0% |
| !! | GAGAGATTTTGAAAAGGAAT+GGG | - | chr7.4:78577455-78577474 | MS.gene91057:intron | 30.0% |
| !! | GAGATAGAGAGATTTTGAAA+AGG | - | chr7.4:78577449-78577468 | MS.gene91057:intron | 30.0% |
| !!! | CACCTTTTAAGATTTTTGGT+TGG | - | chr7.4:78579914-78579933 | MS.gene91057:CDS | 30.0% |
| !!! | GAAGTTGATGGTTTTTTCAA+TGG | + | chr7.4:78578756-78578775 | None:intergenic | 30.0% |
| !!! | TCCATTTTTTACATTAGCAG+TGG | + | chr7.4:78578955-78578974 | None:intergenic | 30.0% |
| !!! | TGGTTTTTTCAATGGTAAAG+AGG | + | chr7.4:78578748-78578767 | None:intergenic | 30.0% |
| AAAGATGAAGATACTGAGAC+GGG | + | chr7.4:78578615-78578634 | None:intergenic | 35.0% | |
| ACAAAGGCTAACACAAGAAA+AGG | + | chr7.4:78580123-78580142 | None:intergenic | 35.0% | |
| ACAAGATGCAAAGGATCATA+CGG | + | chr7.4:78577883-78577902 | None:intergenic | 35.0% | |
| AGAGATAAGATCACATACCT+TGG | + | chr7.4:78579441-78579460 | None:intergenic | 35.0% | |
| AGATGTATGAATGCACAACA+TGG | + | chr7.4:78578430-78578449 | None:intergenic | 35.0% | |
| AGGATGTTAGGGAAAAGAAT+GGG | - | chr7.4:78577617-78577636 | MS.gene91057:intron | 35.0% | |
| ATCTCTTTCCATTTCAGAGT+GGG | - | chr7.4:78579646-78579665 | MS.gene91057:CDS | 35.0% | |
| ATGGAATCTGAATAAACCCT+TGG | + | chr7.4:78578411-78578430 | None:intergenic | 35.0% | |
| ATGGAATCTGGAGAAACAAA+AGG | + | chr7.4:78578519-78578538 | None:intergenic | 35.0% | |
| CAAAGATGAAGATACTGAGA+CGG | + | chr7.4:78578616-78578635 | None:intergenic | 35.0% | |
| CCAGATAAACTATCTACTGA+AGG | + | chr7.4:78579077-78579096 | None:intergenic | 35.0% | |
| CCCTAAGTTATCATTACCAA+GGG | - | chr7.4:78578392-78578411 | MS.gene91057:CDS | 35.0% | |
| CCTTCAGTAGATAGTTTATC+TGG | - | chr7.4:78579074-78579093 | MS.gene91057:CDS | 35.0% | |
| GAATCAGAAGAAATGGAATC+TGG | + | chr7.4:78578531-78578550 | None:intergenic | 35.0% | |
| GCCAAGTTTAGAAAAGATTG+AGG | - | chr7.4:78579184-78579203 | MS.gene91057:CDS | 35.0% | |
| GCTCTTTGTTGAGAATGTAT+AGG | - | chr7.4:78577842-78577861 | MS.gene91057:CDS | 35.0% | |
| GGCCAACCAAAAATCTTAAA+AGG | + | chr7.4:78579919-78579938 | None:intergenic | 35.0% | |
| GTGTTTGTTCATTGTTGTCA+AGG | - | chr7.4:78577643-78577662 | MS.gene91057:intron | 35.0% | |
| GTTGCTGAACATGTTTATCT+TGG | - | chr7.4:78577409-78577428 | MS.gene91057:intron | 35.0% | |
| GTTTATTGTGCACATTCCTT+CGG | - | chr7.4:78577954-78577973 | MS.gene91057:CDS | 35.0% | |
| GTTTGTTCATTGTTGTCAAG+GGG | - | chr7.4:78577645-78577664 | MS.gene91057:intron | 35.0% | |
| TACATTCTCAACAAAGAGCT+TGG | + | chr7.4:78577841-78577860 | None:intergenic | 35.0% | |
| TATCATGATTAAGGAAGGTG+AGG | - | chr7.4:78578080-78578099 | MS.gene91057:CDS | 35.0% | |
| TATCTCTTTCCATTTCAGAG+TGG | - | chr7.4:78579645-78579664 | MS.gene91057:CDS | 35.0% | |
| TTGAAGTCTGCATCATCAAA+GGG | - | chr7.4:78579104-78579123 | MS.gene91057:CDS | 35.0% | |
| ! | ACATTTTCCGGGAATTTGAA+AGG | + | chr7.4:78576913-78576932 | None:intergenic | 35.0% |
| ! | ACTTCATATTGAAGGTGTGT+CGG | - | chr7.4:78579728-78579747 | MS.gene91057:CDS | 35.0% |
| ! | ATAGACAGCCTGATTTGATT+GGG | - | chr7.4:78579348-78579367 | MS.gene91057:CDS | 35.0% |
| ! | CAAATTCCCGGAAAATGTTT+TGG | - | chr7.4:78576915-78576934 | MS.gene91057:intron | 35.0% |
| ! | GCCTCAATCTTTTCTAAACT+TGG | + | chr7.4:78579188-78579207 | None:intergenic | 35.0% |
| ! | TGATGCTTTTCAGTTTGTGA+AGG | - | chr7.4:78577729-78577748 | MS.gene91057:intron | 35.0% |
| ! | TTAGAATTTTTCCTGGTGAG+AGG | - | chr7.4:78578190-78578209 | MS.gene91057:CDS | 35.0% |
| ! | TTATCAATCCCACTCTGAAA+TGG | + | chr7.4:78579657-78579676 | None:intergenic | 35.0% |
| ! | TTTGAAGTCTGCATCATCAA+AGG | - | chr7.4:78579103-78579122 | MS.gene91057:CDS | 35.0% |
| ! | TTTGTCTGCTTTGGATTCTA+GGG | - | chr7.4:78577927-78577946 | MS.gene91057:CDS | 35.0% |
| !! | ACCCTTGGTAATGATAACTT+AGG | + | chr7.4:78578396-78578415 | None:intergenic | 35.0% |
| !! | AGAGGTAATGGTAATGGTAA+TGG | - | chr7.4:78577226-78577245 | MS.gene91057:intron | 35.0% |
| !! | CCCTTGGTAATGATAACTTA+GGG | + | chr7.4:78578395-78578414 | None:intergenic | 35.0% |
| !! | CCTTGGTAATGATAACTTAG+GGG | + | chr7.4:78578394-78578413 | None:intergenic | 35.0% |
| !! | GCATTTGGTGCAAATCATTT+GGG | - | chr7.4:78579206-78579225 | MS.gene91057:CDS | 35.0% |
| !! | GTAGTTGGAGTATTTTAAGG+CGG | - | chr7.4:78578331-78578350 | MS.gene91057:CDS | 35.0% |
| !! | GTGTGTCCTGAGTATTTTAA+AGG | - | chr7.4:78577508-78577527 | MS.gene91057:intron | 35.0% |
| !! | TTGGATTGGTAAGTATTGTG+CGG | - | chr7.4:78577987-78578006 | MS.gene91057:CDS | 35.0% |
| !! | TTTTCTTTGGCTCCCAAAAT+AGG | - | chr7.4:78579619-78579638 | MS.gene91057:CDS | 35.0% |
| !!! | ATTTTTGGTTGGCCTTCTTT+TGG | - | chr7.4:78579925-78579944 | MS.gene91057:CDS | 35.0% |
| AAAACGAGAGAGGAAGAATC+TGG | + | chr7.4:78578588-78578607 | None:intergenic | 40.0% | |
| AAACGAGAGAGGAAGAATCT+GGG | + | chr7.4:78578587-78578606 | None:intergenic | 40.0% | |
| AAAGCGAGTTCCGATGATAT+CGG | - | chr7.4:78577169-78577188 | MS.gene91057:intron | 40.0% | |
| AAATTCCTGTCCTGATGTGA+AGG | - | chr7.4:78578356-78578375 | MS.gene91057:CDS | 40.0% | |
| AACAAAGAGCTTGGACTAAG+TGG | + | chr7.4:78577832-78577851 | None:intergenic | 40.0% | |
| AACTGGATGCTTCACATGTT+CGG | - | chr7.4:78579315-78579334 | MS.gene91057:CDS | 40.0% | |
| AAGGTCACAGCAGAATTGTA+AGG | - | chr7.4:78577078-78577097 | MS.gene91057:intron | 40.0% | |
| AATTTCACCGATCCGAATTC+CGG | - | chr7.4:78577001-78577020 | MS.gene91057:intron | 40.0% | |
| ACACAAGAAAAGGTTGCTGA+AGG | + | chr7.4:78580113-78580132 | None:intergenic | 40.0% | |
| ACTGTGGATATCTGTACAGT+TGG | + | chr7.4:78578691-78578710 | None:intergenic | 40.0% | |
| AGAAACAAAAGGAGGTGAAG+AGG | + | chr7.4:78578508-78578527 | None:intergenic | 40.0% | |
| AGTTGTTGCAGTGTCAGAAA+AGG | - | chr7.4:78577794-78577813 | MS.gene91057:CDS | 40.0% | |
| ATATCATCGGAACTCGCTTT+CGG | + | chr7.4:78577169-78577188 | None:intergenic | 40.0% | |
| ATATCTGTACAGTTGGACAC+TGG | + | chr7.4:78578684-78578703 | None:intergenic | 40.0% | |
| ATCAACTATTCCTTCCAGTC+GGG | - | chr7.4:78578857-78578876 | MS.gene91057:CDS | 40.0% | |
| ATCCAAACATATAACGCCGA+AGG | + | chr7.4:78577973-78577992 | None:intergenic | 40.0% | |
| ATCTTCGGAACAAGATGCAA+AGG | + | chr7.4:78577892-78577911 | None:intergenic | 40.0% | |
| ATGTTAGGGAAAAGAATGGG+AGG | - | chr7.4:78577620-78577639 | MS.gene91057:intron | 40.0% | |
| CACAAGAAAAGGTTGCTGAA+GGG | + | chr7.4:78580112-78580131 | None:intergenic | 40.0% | |
| CATCAACTATTCCTTCCAGT+CGG | - | chr7.4:78578856-78578875 | MS.gene91057:CDS | 40.0% | |
| CCACCATTATTCCTACTATC+AGG | + | chr7.4:78577340-78577359 | None:intergenic | 40.0% | |
| CCCCTAAGTTATCATTACCA+AGG | - | chr7.4:78578391-78578410 | MS.gene91057:CDS | 40.0% | |
| CCTCAACCCAAACTTACAAT+AGG | + | chr7.4:78579877-78579896 | None:intergenic | 40.0% | |
| CCTGATAGTAGGAATAATGG+TGG | - | chr7.4:78577337-78577356 | MS.gene91057:intron | 40.0% | |
| CTTATCTTATGTGGAGGGAA+GGG | - | chr7.4:78577695-78577714 | MS.gene91057:intron | 40.0% | |
| CTTGCATGCATATGTATGCT+TGG | + | chr7.4:78579260-78579279 | None:intergenic | 40.0% | |
| GAATCCAAAGCAGACAAAGA+CGG | + | chr7.4:78577925-78577944 | None:intergenic | 40.0% | |
| GAATCTGGAGAAACAAAAGG+AGG | + | chr7.4:78578516-78578535 | None:intergenic | 40.0% | |
| GAATTAAGCTTCATGCACTG+TGG | - | chr7.4:78580193-78580212 | MS.gene91057:CDS | 40.0% | |
| GAGGATGTTAGGGAAAAGAA+TGG | - | chr7.4:78577616-78577635 | MS.gene91057:intron | 40.0% | |
| GAGTCAGTTGACAACATTGA+CGG | + | chr7.4:78578471-78578490 | None:intergenic | 40.0% | |
| GATAGGGAGTTCTTTCAAAC+TGG | - | chr7.4:78579298-78579317 | MS.gene91057:CDS | 40.0% | |
| GCAGTTGACTGGAACAAAAT+TGG | - | chr7.4:78579371-78579390 | MS.gene91057:CDS | 40.0% | |
| GCTGAACATGTTTATCTTGG+TGG | - | chr7.4:78577412-78577431 | MS.gene91057:intron | 40.0% | |
| GGTATTGCTGATCCGAATAT+GGG | - | chr7.4:78577760-78577779 | MS.gene91057:CDS | 40.0% | |
| GTGTGGAGTTATAAAGTGTG+AGG | + | chr7.4:78579473-78579492 | None:intergenic | 40.0% | |
| GTTACAAGATAGTCCTAGTG+AGG | - | chr7.4:78577555-78577574 | MS.gene91057:intron | 40.0% | |
| GTTGTTGCAGTGTCAGAAAA+GGG | - | chr7.4:78577795-78577814 | MS.gene91057:CDS | 40.0% | |
| TCATTCTCCGATGATGCAAA+CGG | + | chr7.4:78578282-78578301 | None:intergenic | 40.0% | |
| TCGGCGTTATATGTTTGGAT+TGG | - | chr7.4:78577973-78577992 | MS.gene91057:CDS | 40.0% | |
| TCTTGTTCCGAAGATGTTGA+CGG | - | chr7.4:78577897-78577916 | MS.gene91057:CDS | 40.0% | |
| TGACAAGCGAAACCCATATT+CGG | + | chr7.4:78577775-78577794 | None:intergenic | 40.0% | |
| TGTTAGGGAAAAGAATGGGA+GGG | - | chr7.4:78577621-78577640 | MS.gene91057:intron | 40.0% | |
| TTACAATTCTGCTGTGACCT+TGG | + | chr7.4:78577079-78577098 | None:intergenic | 40.0% | |
| TTCCTTCGGCGTTATATGTT+TGG | - | chr7.4:78577968-78577987 | MS.gene91057:CDS | 40.0% | |
| ! | AGGTATTGCTGATCCGAATA+TGG | - | chr7.4:78577759-78577778 | MS.gene91057:CDS | 40.0% |
| ! | AGTTTTCAGAAAAGCCATCG+TGG | - | chr7.4:78578242-78578261 | MS.gene91057:CDS | 40.0% |
| ! | CTGAACGCCAAAACATTTTC+CGG | + | chr7.4:78576925-78576944 | None:intergenic | 40.0% |
| ! | CTTTGTCTGCTTTGGATTCT+AGG | - | chr7.4:78577926-78577945 | MS.gene91057:CDS | 40.0% |
| ! | GATAGACAGCCTGATTTGAT+TGG | - | chr7.4:78579347-78579366 | MS.gene91057:CDS | 40.0% |
| ! | GTGGTGGAGATAATACTAAC+CGG | - | chr7.4:78577029-78577048 | MS.gene91057:intron | 40.0% |
| ! | GTTTTCAGAAAAGCCATCGT+GGG | - | chr7.4:78578243-78578262 | MS.gene91057:CDS | 40.0% |
| ! | TAAGTATTGTGCGGCTATCA+TGG | - | chr7.4:78577996-78578015 | MS.gene91057:CDS | 40.0% |
| ! | TAGACAGCCTGATTTGATTG+GGG | - | chr7.4:78579349-78579368 | MS.gene91057:CDS | 40.0% |
| ! | TGAACGCCAAAACATTTTCC+GGG | + | chr7.4:78576924-78576943 | None:intergenic | 40.0% |
| ! | TGCAAATCATTTGGGTTCAG+AGG | - | chr7.4:78579214-78579233 | MS.gene91057:CDS | 40.0% |
| ! | TGCTTTTCAGTTTGTGAAGG+CGG | - | chr7.4:78577732-78577751 | MS.gene91057:intron | 40.0% |
| ! | TTGTCTGCTTTGGATTCTAG+GGG | - | chr7.4:78577928-78577947 | MS.gene91057:CDS | 40.0% |
| ! | TTTTCCGGGAATTTGAAAGG+TGG | + | chr7.4:78576910-78576929 | None:intergenic | 40.0% |
| !! | CCTATTGTAAGTTTGGGTTG+AGG | - | chr7.4:78579874-78579893 | MS.gene91057:CDS | 40.0% |
| !! | GGCATTTGGTGCAAATCATT+TGG | - | chr7.4:78579205-78579224 | MS.gene91057:CDS | 40.0% |
| AAACTCCTTCACATCAGGAC+AGG | + | chr7.4:78578364-78578383 | None:intergenic | 45.0% | |
| AACCACCTATTACTCCTGGT+GGG | - | chr7.4:78577203-78577222 | MS.gene91057:intron | 45.0% | |
| AACGAGAGAGGAAGAATCTG+GGG | + | chr7.4:78578586-78578605 | None:intergenic | 45.0% | |
| AAGCGAGTTCCGATGATATC+GGG | - | chr7.4:78577170-78577189 | MS.gene91057:intron | 45.0% | |
| ACAATGAACTCAGCAGAGCA+AGG | + | chr7.4:78580304-78580323 | None:intergenic | 45.0% | |
| ACACAGTTCCTGAGAACTGA+TGG | + | chr7.4:78579050-78579069 | None:intergenic | 45.0% | |
| ACTCTCTCTTGCAGGAAGAT+GGG | + | chr7.4:78578313-78578332 | None:intergenic | 45.0% | |
| ATCATGGAAAGGGATGCTAG+AGG | - | chr7.4:78578012-78578031 | MS.gene91057:CDS | 45.0% | |
| ATCCTTGCACTCTCTCATAC+CGG | + | chr7.4:78578056-78578075 | None:intergenic | 45.0% | |
| ATTGTGCGGCTATCATGGAA+AGG | - | chr7.4:78578001-78578020 | MS.gene91057:CDS | 45.0% | |
| ATTTGATTGGGGCAGTTGAC+TGG | - | chr7.4:78579360-78579379 | MS.gene91057:CDS | 45.0% | |
| CATGCCACCTTTCAAATTCC+CGG | - | chr7.4:78576903-78576922 | MS.gene91057:CDS | 45.0% | |
| CGACTGGAAGGAATAGTTGA+TGG | + | chr7.4:78578858-78578877 | None:intergenic | 45.0% | |
| CGTTCAGCAATGGAAGTTGA+TGG | + | chr7.4:78578768-78578787 | None:intergenic | 45.0% | |
| GAAATTCGATTCCGGTTCAC+CGG | + | chr7.4:78576987-78577006 | None:intergenic | 45.0% | |
| GAGAGAAACTCCTTCACATC+AGG | + | chr7.4:78578369-78578388 | None:intergenic | 45.0% | |
| GCAATGAACCATCAGTTCTC+AGG | - | chr7.4:78579039-78579058 | MS.gene91057:CDS | 45.0% | |
| GCAGATCGAGAACATAGATG+TGG | + | chr7.4:78578726-78578745 | None:intergenic | 45.0% | |
| GCTTATCTTATGTGGAGGGA+AGG | - | chr7.4:78577694-78577713 | MS.gene91057:intron | 45.0% | |
| GGATCGGTGAAATTCGATTC+CGG | + | chr7.4:78576995-78577014 | None:intergenic | 45.0% | |
| GTTGACAACATTGACGGTGA+TGG | + | chr7.4:78578465-78578484 | None:intergenic | 45.0% | |
| TACTCTCTCTTGCAGGAAGA+TGG | + | chr7.4:78578314-78578333 | None:intergenic | 45.0% | |
| TCAAAGGGAGATTACGAGAG+TGG | - | chr7.4:78579119-78579138 | MS.gene91057:CDS | 45.0% | |
| TCAACTGCCCCAATCAAATC+AGG | + | chr7.4:78579359-78579378 | None:intergenic | 45.0% | |
| TCATGGAAAGGGATGCTAGA+GGG | - | chr7.4:78578013-78578032 | MS.gene91057:CDS | 45.0% | |
| TCGAGAATGGTGTTTGTGTC+TGG | - | chr7.4:78579830-78579849 | MS.gene91057:CDS | 45.0% | |
| TTCCTGCAAGAGAGAGTAGT+TGG | - | chr7.4:78578316-78578335 | MS.gene91057:CDS | 45.0% | |
| TTGTGCGGCTATCATGGAAA+GGG | - | chr7.4:78578002-78578021 | MS.gene91057:CDS | 45.0% | |
| ! | AAAGCATCCCAAAACGAACG+TGG | + | chr7.4:78578108-78578127 | None:intergenic | 45.0% |
| ! | ACCTTGGTGACTGTATTGTG+CGG | + | chr7.4:78579425-78579444 | None:intergenic | 45.0% |
| ! | GTGTTTGTCAGTGTCGAGAA+TGG | - | chr7.4:78579817-78579836 | MS.gene91057:CDS | 45.0% |
| ! | TGAGGAACCACGTTCGTTTT+GGG | - | chr7.4:78578098-78578117 | MS.gene91057:CDS | 45.0% |
| ! | TGCCTTTGATGGACATGTCT+GGG | - | chr7.4:78578139-78578158 | MS.gene91057:CDS | 45.0% |
| ! | TTGCCTTTGATGGACATGTC+TGG | - | chr7.4:78578138-78578157 | MS.gene91057:CDS | 45.0% |
| ! | TTTTCCTGGTGAGAGGAAAG+TGG | - | chr7.4:78578197-78578216 | MS.gene91057:CDS | 45.0% |
| !!! | TGTTTTGGCGTTCAGCTTCA+TGG | - | chr7.4:78576930-78576949 | MS.gene91057:intron | 45.0% |
| !! | AGAAATAAAATATAAAATAA+TGG | + | chr7.4:78579787-78579806 | None:intergenic | 5.0% |
| AAAGGATCATACGGCGAGTG+AGG | + | chr7.4:78577874-78577893 | None:intergenic | 50.0% | |
| AAGAACACCATGTTCCCGAC+TGG | + | chr7.4:78578874-78578893 | None:intergenic | 50.0% | |
| ACTACCTCTGCGTTCAGCAA+TGG | + | chr7.4:78578778-78578797 | None:intergenic | 50.0% | |
| ACTTCCATTGCTGAACGCAG+AGG | - | chr7.4:78578771-78578790 | MS.gene91057:CDS | 50.0% | |
| AGCAATCGAAAGCGGCTGAA+GGG | + | chr7.4:78577125-78577144 | None:intergenic | 50.0% | |
| AGCAGAGCAAGGAACTCTTG+TGG | + | chr7.4:78580293-78580312 | None:intergenic | 50.0% | |
| AGCGAGTTCCGATGATATCG+GGG | - | chr7.4:78577171-78577190 | MS.gene91057:intron | 50.0% | |
| ATTATCTCCACCACCACTGC+CGG | + | chr7.4:78577023-78577042 | None:intergenic | 50.0% | |
| ATTCCTTCCAGTCGGGAACA+TGG | - | chr7.4:78578864-78578883 | MS.gene91057:CDS | 50.0% | |
| CAACCACCTATTACTCCTGG+TGG | - | chr7.4:78577202-78577221 | MS.gene91057:intron | 50.0% | |
| CATGGAAAGGGATGCTAGAG+GGG | - | chr7.4:78578014-78578033 | MS.gene91057:CDS | 50.0% | |
| CCACAACCACCTATTACTCC+TGG | - | chr7.4:78577199-78577218 | MS.gene91057:intron | 50.0% | |
| CCAGGAGTAATAGGTGGTTG+TGG | + | chr7.4:78577202-78577221 | None:intergenic | 50.0% | |
| CGGGAATTTGAAAGGTGGCA+TGG | + | chr7.4:78576905-78576924 | None:intergenic | 50.0% | |
| CTCCAACTACTCTCTCTTGC+AGG | + | chr7.4:78578321-78578340 | None:intergenic | 50.0% | |
| CTCCCAGACATGTCCATCAA+AGG | + | chr7.4:78578144-78578163 | None:intergenic | 50.0% | |
| GACGGATCCGTCAACATCTT+CGG | + | chr7.4:78577907-78577926 | None:intergenic | 50.0% | |
| GACGGGAGTAAAAACGAGAG+AGG | + | chr7.4:78578598-78578617 | None:intergenic | 50.0% | |
| GCAATGTCTGGACATGAAGC+TGG | + | chr7.4:78579005-78579024 | None:intergenic | 50.0% | |
| GGATCCGTCTTTGTCTGCTT+TGG | - | chr7.4:78577918-78577937 | MS.gene91057:CDS | 50.0% | |
| GTGGCGATAACTTGACACTG+TGG | + | chr7.4:78578707-78578726 | None:intergenic | 50.0% | |
| TCGGCCACTCATCTAAACTC+CGG | + | chr7.4:78577150-78577169 | None:intergenic | 50.0% | |
| TGTCAGACATGTGTCGTCAC+CGG | - | chr7.4:78579751-78579770 | MS.gene91057:CDS | 50.0% | |
| TGTGCCTCCGTTTGCATCAT+CGG | - | chr7.4:78578272-78578291 | MS.gene91057:CDS | 50.0% | |
| TTACCATTACCTCTCCCACC+AGG | + | chr7.4:78577220-78577239 | None:intergenic | 50.0% | |
| TTCAGAAAAGCCATCGTGGG+AGG | - | chr7.4:78578246-78578265 | MS.gene91057:CDS | 50.0% | |
| TTCTCCGATGATGCAAACGG+AGG | + | chr7.4:78578279-78578298 | None:intergenic | 50.0% | |
| ! | CCAGACATTGCTGATAGCGT+GGG | - | chr7.4:78579014-78579033 | MS.gene91057:CDS | 50.0% |
| ! | GGTGGGAGAGGTAATGGTAA+TGG | - | chr7.4:78577220-78577239 | MS.gene91057:intron | 50.0% |
| ! | GTGAGGAACCACGTTCGTTT+TGG | - | chr7.4:78578097-78578116 | MS.gene91057:CDS | 50.0% |
| ! | TCCAGACATTGCTGATAGCG+TGG | - | chr7.4:78579013-78579032 | MS.gene91057:CDS | 50.0% |
| !! | ATTGTTGTCAAGGGGTGTCG+AGG | - | chr7.4:78577653-78577672 | MS.gene91057:intron | 50.0% |
| AAGGCGGTGGAGGAAATCTC+CGG | + | chr7.4:78577051-78577070 | None:intergenic | 55.0% | |
| ACACCATGTTCCCGACTGGA+AGG | + | chr7.4:78578870-78578889 | None:intergenic | 55.0% | |
| ACCACTGCCGGAATTCGGAT+CGG | + | chr7.4:78577011-78577030 | None:intergenic | 55.0% | |
| ACTCCTGGTGGGAGAGGTAA+TGG | - | chr7.4:78577214-78577233 | MS.gene91057:intron | 55.0% | |
| AGGCACAAAACCTCCCACGA+TGG | + | chr7.4:78578259-78578278 | None:intergenic | 55.0% | |
| CCCACGCTATCAGCAATGTC+TGG | + | chr7.4:78579017-78579036 | None:intergenic | 55.0% | |
| CCTATTACTCCTGGTGGGAG+AGG | - | chr7.4:78577208-78577227 | MS.gene91057:intron | 55.0% | |
| CCTCTCCCACCAGGAGTAAT+AGG | + | chr7.4:78577211-78577230 | None:intergenic | 55.0% | |
| CGCAAATCCTTCCGGTGAAC+CGG | - | chr7.4:78576973-78576992 | MS.gene91057:intron | 55.0% | |
| CGGTTCACCGGAAGGATTTG+CGG | + | chr7.4:78576975-78576994 | None:intergenic | 55.0% | |
| CTCCCACCAGGAGTAATAGG+TGG | + | chr7.4:78577208-78577227 | None:intergenic | 55.0% | |
| CTCGCCGGAGTTTAGATGAG+TGG | - | chr7.4:78577143-78577162 | MS.gene91057:intron | 55.0% | |
| GAGCAATCGAAAGCGGCTGA+AGG | + | chr7.4:78577126-78577145 | None:intergenic | 55.0% | |
| GCAATCGAAAGCGGCTGAAG+GGG | + | chr7.4:78577124-78577143 | None:intergenic | 55.0% | |
| GCATCCACTTTCCTCTCACC+AGG | + | chr7.4:78578204-78578223 | None:intergenic | 55.0% | |
| GCCGCACAATACAGTCACCA+AGG | - | chr7.4:78579421-78579440 | MS.gene91057:CDS | 55.0% | |
| GTTCCGATGATATCGGGGAG+TGG | - | chr7.4:78577176-78577195 | MS.gene91057:intron | 55.0% | |
| TGCTGTGACCTTGGCGTCAA+AGG | + | chr7.4:78577070-78577089 | None:intergenic | 55.0% | |
| TGGCCACTCCCCGATATCAT+CGG | + | chr7.4:78577182-78577201 | None:intergenic | 55.0% | |
| TGTGACCTTGGCGTCAAAGG+CGG | + | chr7.4:78577067-78577086 | None:intergenic | 55.0% | |
| TTCACCGGAAGGATTTGCGG+CGG | + | chr7.4:78576972-78576991 | None:intergenic | 55.0% | |
| TTCGATTCCGGTTCACCGGA+AGG | + | chr7.4:78576983-78577002 | None:intergenic | 55.0% | |
| ! | GTCCGGTATGAGAGAGTGCA+AGG | - | chr7.4:78578051-78578070 | MS.gene91057:CDS | 55.0% |
| AAGGATTTGCGGCGGCGGAA+CGG | + | chr7.4:78576964-78576983 | None:intergenic | 60.0% | |
| AAGGGATGCTAGAGGGGCTG+CGG | - | chr7.4:78578020-78578039 | MS.gene91057:CDS | 60.0% | |
| ACCGATCCGAATTCCGGCAG+TGG | - | chr7.4:78577007-78577026 | MS.gene91057:intron | 60.0% | |
| ATCGAAAGCGGCTGAAGGGG+CGG | + | chr7.4:78577121-78577140 | None:intergenic | 60.0% | |
| CAGTTTGTGAAGGCGGCGAG+AGG | - | chr7.4:78577739-78577758 | MS.gene91057:intron | 60.0% | |
| CCACCACCACTGCCGGAATT+CGG | + | chr7.4:78577016-78577035 | None:intergenic | 60.0% | |
| CTCCGGCGAGCAATCGAAAG+CGG | + | chr7.4:78577133-78577152 | None:intergenic | 60.0% | |
| GATCCGAATTCCGGCAGTGG+TGG | - | chr7.4:78577010-78577029 | MS.gene91057:intron | 60.0% | |
| GGGCTGCGGATCAGATTGTC+CGG | - | chr7.4:78578034-78578053 | MS.gene91057:CDS | 60.0% | |
| ! | AGCCGCTTTCGATTGCTCGC+CGG | - | chr7.4:78577128-78577147 | MS.gene91057:intron | 60.0% |
| ACCGGAAGGATTTGCGGCGG+CGG | + | chr7.4:78576969-78576988 | None:intergenic | 65.0% | |
| AGGATTTGCGGCGGCGGAAC+GGG | + | chr7.4:78576963-78576982 | None:intergenic | 65.0% | |
| CCGAATTCCGGCAGTGGTGG+TGG | - | chr7.4:78577013-78577032 | MS.gene91057:intron | 65.0% | |
| CTCCACCGCCTTTGACGCCA+AGG | - | chr7.4:78577059-78577078 | MS.gene91057:intron | 65.0% | |
| CTTGGCGTCAAAGGCGGTGG+AGG | + | chr7.4:78577061-78577080 | None:intergenic | 65.0% | |
| GACCTTGGCGTCAAAGGCGG+TGG | + | chr7.4:78577064-78577083 | None:intergenic | 65.0% | |
| TCCGCCGCCGCAAATCCTTC+CGG | - | chr7.4:78576965-78576984 | MS.gene91057:intron | 65.0% | |
| ATTTGCGGCGGCGGAACGGG+CGG | + | chr7.4:78576960-78576979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 78576875 | 78580325 | 78576875 | ID=MS.gene91057 |
| chr7.4 | mRNA | 78576875 | 78580325 | 78576875 | ID=MS.gene91057.t1;Parent=MS.gene91057 |
| chr7.4 | exon | 78577758 | 78580325 | 78577758 | ID=MS.gene91057.t1.exon1;Parent=MS.gene91057.t1 |
| chr7.4 | CDS | 78577758 | 78580325 | 78577758 | ID=cds.MS.gene91057.t1;Parent=MS.gene91057.t1 |
| chr7.4 | exon | 78576875 | 78576931 | 78576875 | ID=MS.gene91057.t1.exon2;Parent=MS.gene91057.t1 |
| chr7.4 | CDS | 78576875 | 78576931 | 78576875 | ID=cds.MS.gene91057.t1;Parent=MS.gene91057.t1 |
| Gene Sequence |
| Protein sequence |
