AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91120.t1 MTR_8g073730 71.698 371 66 4 1 332 714 1084 3.55e-180 527
MS.gene91120.t1 MTR_8g012190 67.127 362 87 4 1 330 704 1065 7.62e-157 466
MS.gene91120.t1 MTR_8g012190 67.127 362 87 4 1 330 710 1071 8.50e-157 466
MS.gene91120.t1 MTR_5g047530 71.827 323 61 2 1 293 715 1037 5.33e-153 456
MS.gene91120.t1 MTR_8g012180 61.417 381 97 6 1 332 499 878 2.15e-150 444
MS.gene91120.t1 MTR_8g012180 61.417 381 97 6 1 332 708 1087 3.33e-148 444
MS.gene91120.t1 MTR_8g012080 57.627 413 93 7 1 332 712 1123 2.71e-146 441
MS.gene91120.t1 MTR_8g011710 58.168 404 96 7 1 332 735 1137 2.66e-144 436
MS.gene91120.t1 MTR_5g047480 70.550 309 61 2 1 279 715 1023 2.37e-143 431
MS.gene91120.t1 MTR_8g012200 60.695 374 99 8 1 332 724 1091 1.80e-139 422
MS.gene91120.t1 MTR_5g036240 55.583 412 99 9 1 331 567 975 4.54e-136 410
MS.gene91120.t1 MTR_2g437560 58.311 367 93 8 1 332 687 1028 7.84e-124 380
MS.gene91120.t1 MTR_7g025250 57.143 371 119 7 1 332 724 1093 1.17e-122 378
MS.gene91120.t1 MTR_3g072140 60.377 318 101 6 1 298 568 880 7.86e-117 358
MS.gene91120.t1 MTR_3g022930 48.055 437 113 10 1 332 728 1155 3.79e-114 357
MS.gene91120.t1 MTR_0468s0010 47.786 429 116 10 1 332 694 1111 9.24e-109 342
MS.gene91120.t1 MTR_5g071610 49.361 391 120 9 1 329 725 1099 8.15e-105 331
MS.gene91120.t1 MTR_8g011850 57.333 300 94 6 1 267 743 1041 4.47e-97 315
MS.gene91120.t1 MTR_8g020430 58.596 285 85 5 1 254 691 973 3.65e-95 303
MS.gene91120.t1 MTR_8g011950 47.238 362 128 7 1 330 714 1044 6.00e-91 293
MS.gene91120.t1 MTR_8g037235 49.032 310 125 7 1 305 684 965 4.92e-77 255
MS.gene91120.t1 MTR_8g012005 51.685 267 62 6 133 332 10 276 1.01e-76 237
MS.gene91120.t1 MTR_8g037220 56.652 233 86 4 62 293 742 960 2.58e-73 246
MS.gene91120.t1 MTR_8g037220 56.652 233 86 4 62 293 521 739 3.35e-73 246
MS.gene91120.t1 MTR_5g029940 56.311 206 49 5 134 330 4 177 4.07e-66 206
MS.gene91120.t1 MTR_8g011870 46.311 244 72 5 144 329 121 363 2.92e-60 197
MS.gene91120.t1 MTR_7g091540 38.079 302 154 5 1 271 373 672 1.05e-54 190
MS.gene91120.t1 MTR_6g015455 35.870 368 180 9 1 323 1097 1453 7.43e-53 187
MS.gene91120.t1 MTR_6g015455 32.374 278 171 6 47 319 196 461 7.41e-38 144
MS.gene91120.t1 MTR_4g014570 35.882 340 158 9 1 289 782 1112 4.25e-51 182
MS.gene91120.t1 MTR_6g015745 37.542 301 155 5 1 270 758 1056 4.28e-50 179
MS.gene91120.t1 MTR_4g015030 34.473 351 163 11 1 301 770 1103 1.78e-48 174
MS.gene91120.t1 MTR_6g015505 34.365 323 162 4 1 273 520 842 7.85e-48 172
MS.gene91120.t1 MTR_4g014990 34.000 350 175 8 1 301 743 1085 1.17e-47 172
MS.gene91120.t1 MTR_4g015060 35.016 317 154 6 1 267 754 1068 2.71e-46 168
MS.gene91120.t1 MTR_6g015430 34.727 311 154 8 1 267 574 879 6.68e-46 167
MS.gene91120.t1 MTR_6g015430 34.727 311 154 8 1 267 767 1072 6.94e-46 167
MS.gene91120.t1 MTR_6g015435 36.897 290 150 5 1 259 742 1029 8.42e-46 167
MS.gene91120.t1 MTR_6g015665 35.275 309 149 6 1 259 798 1105 1.04e-45 166
MS.gene91120.t1 MTR_6g015510 38.384 297 138 8 1 259 754 1043 1.09e-45 166
MS.gene91120.t1 MTR_6g015490 36.013 311 156 6 1 270 800 1108 1.26e-45 166
MS.gene91120.t1 MTR_6g015490 36.013 311 156 6 1 270 574 882 1.78e-45 166
MS.gene91120.t1 MTR_6g015695 34.615 312 160 6 1 270 757 1066 3.74e-44 162
MS.gene91120.t1 MTR_6g016000 31.790 324 168 5 1 273 789 1110 1.77e-43 160
MS.gene91120.t1 MTR_6g016000 31.790 324 168 5 1 273 771 1092 1.86e-43 160
MS.gene91120.t1 MTR_6g015675 34.722 288 157 5 1 259 182 467 3.04e-43 155
MS.gene91120.t1 MTR_6g015775 35.862 290 148 6 1 259 837 1119 3.87e-43 159
MS.gene91120.t1 MTR_7g055970 34.169 319 153 10 1 267 179 492 1.60e-42 154
MS.gene91120.t1 MTR_6g015405 34.906 318 152 7 1 270 754 1064 3.29e-42 156
MS.gene91120.t1 MTR_4g020590 32.087 321 152 6 1 270 1210 1515 2.66e-41 154
MS.gene91120.t1 MTR_4g020590 32.087 321 152 6 1 270 1217 1522 2.77e-41 154
MS.gene91120.t1 MTR_4g021095 33.758 314 136 9 1 258 1094 1391 3.03e-41 154
MS.gene91120.t1 MTR_6g015730 35.275 309 148 6 1 259 1022 1328 5.42e-41 153
MS.gene91120.t1 MTR_0552s0040 34.471 293 153 8 1 258 163 451 1.73e-40 150
MS.gene91120.t1 MTR_4g021170 33.538 325 149 8 1 273 1210 1519 1.74e-40 151
MS.gene91120.t1 MTR_6g015680 32.941 340 170 9 1 289 750 1082 2.27e-40 151
MS.gene91120.t1 MTR_4g020535 34.539 304 162 9 1 272 707 1005 6.10e-40 150
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1221 1546 1.16e-38 146
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1187 1512 1.19e-38 146
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1221 1546 1.33e-38 146
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1222 1547 1.42e-38 146
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1723 2048 1.56e-38 146
MS.gene91120.t1 MTR_7g088950 33.939 330 163 9 1 279 1689 2014 1.58e-38 146
MS.gene91120.t1 MTR_7g088950 34.169 319 155 9 1 268 1187 1501 2.02e-38 145
MS.gene91120.t1 MTR_7g088950 34.169 319 155 9 1 268 1187 1501 2.18e-38 145
MS.gene91120.t1 MTR_4g020850 33.228 316 147 7 1 267 1436 1736 2.58e-38 145
MS.gene91120.t1 MTR_7g088950 34.169 319 155 9 1 268 1723 2037 3.05e-38 145
MS.gene91120.t1 MTR_8g012180 50.909 165 48 4 1 133 708 871 1.29e-37 143
MS.gene91120.t1 MTR_4g020700 33.540 322 150 9 1 273 1231 1537 2.10e-37 142
MS.gene91120.t1 MTR_4g020700 33.540 322 150 9 1 273 1231 1537 2.50e-37 142
MS.gene91120.t1 MTR_4g020640 32.911 316 146 7 1 267 1249 1547 2.89e-37 142
MS.gene91120.t1 MTR_4g020640 32.911 316 146 7 1 267 1249 1547 3.29e-37 142
MS.gene91120.t1 MTR_4g021023 29.651 344 188 7 1 307 1005 1331 7.91e-37 141
MS.gene91120.t1 MTR_4g021023 29.360 344 189 6 1 307 1256 1582 1.02e-36 140
MS.gene91120.t1 MTR_6g015410 31.889 323 167 7 1 273 713 1032 1.07e-36 140
MS.gene91120.t1 MTR_0294s0010 32.781 302 149 8 1 267 571 853 6.97e-36 138
MS.gene91120.t1 MTR_4g020550 31.962 316 149 6 1 267 1189 1487 9.92e-36 137
MS.gene91120.t1 MTR_4g021057 31.790 324 143 10 1 267 1249 1551 5.15e-35 135
MS.gene91120.t1 MTR_6g015600 33.446 296 155 5 1 259 455 745 5.31e-35 135
MS.gene91120.t1 MTR_0286s0020 32.399 321 146 8 1 267 230 533 8.82e-35 134
MS.gene91120.t1 MTR_4g023400 31.429 315 166 10 1 271 1225 1533 9.34e-35 135
MS.gene91120.t1 MTR_8g011710 47.273 165 54 4 1 133 735 898 2.66e-34 133
MS.gene91120.t1 MTR_7g025250 50.296 169 47 4 1 133 724 891 4.72e-34 132
MS.gene91120.t1 MTR_4g020490 30.392 306 163 6 1 275 1379 1665 1.73e-32 128
MS.gene91120.t1 MTR_6g015595 43.200 125 71 0 143 267 10 134 6.18e-31 117
MS.gene91120.t1 MTR_3g104170 40.876 137 79 2 135 270 1 136 8.52e-30 112
MS.gene91120.t1 MTR_3g104240 40.876 137 79 2 135 270 1 136 8.52e-30 112
MS.gene91120.t1 MTR_3g104130 40.876 137 79 2 135 270 1 136 1.81e-29 111
MS.gene91120.t1 MTR_3g104210 40.876 137 79 2 135 270 1 136 1.81e-29 111
MS.gene91120.t1 MTR_6g015765 41.270 126 72 2 135 259 1 125 2.58e-28 108
MS.gene91120.t1 MTR_6g015580 33.117 308 151 10 1 259 565 866 9.34e-27 111
MS.gene91120.t1 MTR_6g015580 33.117 308 151 10 1 259 731 1032 9.42e-27 111
MS.gene91120.t1 MTR_5g029950 53.153 111 25 1 1 84 181 291 1.09e-25 104
MS.gene91120.t1 MTR_5g029935 69.333 75 14 2 259 332 50 116 1.77e-24 96.3
MS.gene91120.t1 MTR_4g020760 30.675 326 129 13 1 273 354 635 2.65e-24 103
MS.gene91120.t1 MTR_4g015050 31.276 243 115 6 1 193 637 877 7.19e-23 100
MS.gene91120.t1 MTR_5g071610 42.763 152 49 4 1 123 725 867 6.08e-22 97.1
MS.gene91120.t1 MTR_4g068200 41.322 121 67 3 142 259 478 597 3.98e-20 91.7
MS.gene91120.t1 MTR_4g021030 45.556 90 49 0 174 263 6 95 1.80e-19 84.0
MS.gene91120.t1 MTR_2g450830 34.507 142 86 2 118 259 730 864 1.42e-18 87.0
MS.gene91120.t1 MTR_6g015720 31.579 209 109 6 1 181 611 813 9.38e-18 84.7
MS.gene91120.t1 MTR_4g017740 44.828 87 48 0 174 260 6 92 4.08e-17 79.0
MS.gene91120.t1 MTR_8g012260 52.564 78 29 4 54 124 21 97 1.92e-16 74.3
MS.gene91120.t1 MTR_6g465280 46.154 78 42 0 179 256 1 78 1.78e-15 71.6
MS.gene91120.t1 MTR_4g014580 39.000 100 60 1 195 294 629 727 9.98e-14 72.4
MS.gene91120.t1 MTR_6g015590 32.639 144 70 1 1 117 646 789 1.13e-11 66.2
MS.gene91120.t1 MTR_6g015450 34.021 97 63 1 191 287 37 132 1.64e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 63 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGTGACAATTATCCTTCT+TGG 0.236516 1.3:+22104651 MS.gene91120:CDS
CTGTGTCTTGCTTGTAAATC+TGG 0.244847 1.3:-22104841 None:intergenic
AAAGGTGTAGTATCAAATTT+AGG 0.288020 1.3:+22104890 MS.gene91120:CDS
GGATGTAGAGAGTAATAATA+TGG 0.305324 1.3:+22103208 MS.gene91120:CDS
TTTCAAAACTTAGATGTGTT+TGG 0.324901 1.3:+22103258 MS.gene91120:CDS
GTGGAGATATTTGTAGCTAT+TGG 0.328852 1.3:+22104926 MS.gene91120:CDS
TTACCTCGTGTTTCTCTGTT+TGG 0.330380 1.3:+22103158 MS.gene91120:CDS
AAGGAAAGAATCACTAGAAT+TGG 0.379898 1.3:-22104627 None:intergenic
TTTGATCTTACTATTGAATA+GGG 0.385235 1.3:-22103038 None:intergenic
TGCATTTCTACTTCATGTAA+TGG 0.385541 1.3:-22105019 None:intergenic
TCCTTGAGATCACTTGTGAT+TGG 0.386458 1.3:+22103401 MS.gene91120:CDS
TGTCGTTTAATGATGAAGAT+TGG 0.389791 1.3:+22104867 MS.gene91120:CDS
ATTCTATTTGTCGCTGGTAA+TGG 0.416180 1.3:-22105139 None:intergenic
AAGGAACGATTTGAGATTTG+TGG 0.428653 1.3:-22103383 None:intergenic
TTTACCTCCTCTTCAGCTGA+TGG 0.430305 1.3:-22105067 None:intergenic
GGAAGTTCCCATGATTCTCT+TGG 0.432490 1.3:+22103428 MS.gene91120:CDS
TCTATTCTCATATCAGATGA+TGG 0.446091 1.3:-22105091 None:intergenic
TACAAGATTTGCAAAGAGAG+TGG 0.449914 1.3:+22105165 MS.gene91120:CDS
CCTCGTGTTTCTCTGTTTGG+TGG 0.452277 1.3:+22103161 MS.gene91120:CDS
GTAGTATCAAATTTAGGAGT+TGG 0.452903 1.3:+22104896 MS.gene91120:CDS
CCATCACTTGTTGTCAAGAA+TGG 0.465907 1.3:+22105115 MS.gene91120:CDS
TGGACATGGATTGACTGTTA+AGG 0.468834 1.3:+22104946 MS.gene91120:CDS
TGCATTGTCTCTAGTTTCCA+TGG 0.470888 1.3:+22103187 MS.gene91120:CDS
GTAAAGATTCTATTTGTCGC+TGG 0.478244 1.3:-22105145 None:intergenic
AGATCACTTGTGATTGGAAT+GGG 0.482136 1.3:+22103407 MS.gene91120:CDS
AGCTATTCCCAAGAGAATCA+TGG 0.491492 1.3:-22103436 None:intergenic
GAAGTTCCCATGATTCTCTT+GGG 0.491801 1.3:+22103429 MS.gene91120:CDS
ACCATCTCCTAATGTGAAAA+CGG 0.493886 1.3:+22105042 MS.gene91120:CDS
ATAGGGAAGTTGTTTGATAC+CGG 0.496716 1.3:-22103021 None:intergenic
AGAAGGTCCTTCACATGTAT+AGG 0.498537 1.3:-22104678 None:intergenic
TGATGTGAACTTTACTGAGT+TGG 0.498749 1.3:+22103343 MS.gene91120:CDS
TACTGCAATCAGAGTTGTCA+AGG 0.502909 1.3:-22102994 None:intergenic
CGAGGTAAGGAATTTCTAGT+TGG 0.503763 1.3:-22103143 None:intergenic
ACAAGATTTGCAAAGAGAGT+GGG 0.511470 1.3:+22105166 MS.gene91120:CDS
AAACAGAGAAACACGAGGTA+AGG 0.515760 1.3:-22103156 None:intergenic
TCTTGGGAATAGCTTAGCAC+AGG 0.521556 1.3:+22103445 MS.gene91120:CDS
ATTATTACTCTCTACATCCA+TGG 0.522329 1.3:-22103204 None:intergenic
AATCACTATCCTCAGGCACT+TGG 0.532911 1.3:-22104709 None:intergenic
TTTGAAAGGATGGTAAGCAT+TGG 0.535327 1.3:-22103242 None:intergenic
GATAGTGATTGTTGCATGAA+AGG 0.537456 1.3:+22104722 MS.gene91120:CDS
GCTATTCCCAAGAGAATCAT+GGG 0.538515 1.3:-22103435 None:intergenic
TCCAATCACAAGTGATCTCA+AGG 0.538768 1.3:-22103402 None:intergenic
GAGATCACTTGTGATTGGAA+TGG 0.554121 1.3:+22103406 MS.gene91120:CDS
AACGGAGCCATCAGCTGAAG+AGG 0.556482 1.3:+22105060 MS.gene91120:CDS
GTTCTTTATTCATCAACACT+TGG 0.563602 1.3:+22104758 MS.gene91120:CDS
CATGTATAGGCTAACCAAGA+AGG 0.565037 1.3:-22104665 None:intergenic
GATGTAGAGAGTAATAATAT+GGG 0.568589 1.3:+22103209 MS.gene91120:CDS
TGGTTAGCCTATACATGTGA+AGG 0.570583 1.3:+22104671 MS.gene91120:CDS
TTCATCAACACTTGGAAACG+TGG 0.571997 1.3:+22104766 MS.gene91120:CDS
TTTAATGATGAAGATTGGAA+AGG 0.576984 1.3:+22104872 MS.gene91120:CDS
ACTCTGATTGCAGTAAATAC+CGG 0.577002 1.3:+22103002 MS.gene91120:CDS
CAAGAAGGATAATTGTCACT+CGG 0.580030 1.3:-22104650 None:intergenic
ATATTTGTAGCTATTGGACA+TGG 0.585570 1.3:+22104932 MS.gene91120:CDS
AAGGATAATTGTCACTCGGA+AGG 0.586580 1.3:-22104646 None:intergenic
CCATTCTTGACAACAAGTGA+TGG 0.588301 1.3:-22105115 None:intergenic
ATGCAACAATCACTATCCTC+AGG 0.604474 1.3:-22104716 None:intergenic
GGCACTTGGAAAAGTACAGA+AGG 0.616776 1.3:-22104695 None:intergenic
TTTAGGAGTTGGTGACAATG+TGG 0.624441 1.3:+22104907 MS.gene91120:CDS
TGGATTGACTGTTAAGGAGA+CGG 0.627449 1.3:+22104952 MS.gene91120:CDS
GAGTTGGAAACAACATCACA+TGG 0.648595 1.3:+22103359 MS.gene91120:CDS
GGAGCCATCAGCTGAAGAGG+AGG 0.659341 1.3:+22105063 MS.gene91120:CDS
GAGTTAGTTGAATCTCTGAG+TGG 0.675918 1.3:-22103289 None:intergenic
CCACCAAACAGAGAAACACG+AGG 0.744989 1.3:-22103161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGTAAATATCAGTTA+AGG - chr1.3:22103490-22103509 None:intergenic 15.0%
!!! TTTTCCTTTATTTCATTAAA+TGG + chr1.3:22103534-22103553 MS.gene91120:intron 15.0%
!! AAGAAATTGGAATAAAATGA+AGG + chr1.3:22104235-22104254 MS.gene91120:intron 20.0%
!! TACTATTAATTAAGAGAACA+TGG + chr1.3:22103501-22103520 MS.gene91120:intron 20.0%
!! TTTGATCTTACTATTGAATA+GGG - chr1.3:22103041-22103060 None:intergenic 20.0%
!!! AAAACATGTTTAACTTAAGA+AGG + chr1.3:22103760-22103779 MS.gene91120:intron 20.0%
!!! AATAATTTGTTTCCTTTTCA+CGG - chr1.3:22104178-22104197 None:intergenic 20.0%
!!! TTTTGATCTTACTATTGAAT+AGG - chr1.3:22103042-22103061 None:intergenic 20.0%
! AATAGACTAATACAAATGCT+AGG + chr1.3:22103607-22103626 MS.gene91120:intron 25.0%
! ACCACCATTTAATGAAATAA+AGG - chr1.3:22103541-22103560 None:intergenic 25.0%
! ATAGACTAATACAAATGCTA+GGG + chr1.3:22103608-22103627 MS.gene91120:intron 25.0%
! ATTGGATATATATCTCTATG+TGG + chr1.3:22103065-22103084 MS.gene91120:intron 25.0%
! CTTTAAACAAATCAACGTAA+CGG - chr1.3:22103724-22103743 None:intergenic 25.0%
! GATGTAGAGAGTAATAATAT+GGG + chr1.3:22103209-22103228 MS.gene91120:CDS 25.0%
! TAAATATCAGTTAAGGTGAA+AGG - chr1.3:22103483-22103502 None:intergenic 25.0%
! TACACAGAAAAATGTATAGA+AGG - chr1.3:22104504-22104523 None:intergenic 25.0%
! TTTAATGATGAAGATTGGAA+AGG + chr1.3:22104872-22104891 MS.gene91120:CDS 25.0%
! TTTCAAAACTTAGATGTGTT+TGG + chr1.3:22103258-22103277 MS.gene91120:CDS 25.0%
!! AAAGGTGTAGTATCAAATTT+AGG + chr1.3:22104890-22104909 MS.gene91120:CDS 25.0%
!! ATAGTAAGATCAAAAAGCAT+TGG + chr1.3:22103047-22103066 MS.gene91120:intron 25.0%
!! GGTTTAAAAGCTTTAGTATA+TGG + chr1.3:22103976-22103995 MS.gene91120:intron 25.0%
!! TACTTTTATTCTCTTCTTTG+AGG - chr1.3:22104307-22104326 None:intergenic 25.0%
!! TCCTTTATTTCATTAAATGG+TGG + chr1.3:22103537-22103556 MS.gene91120:intron 25.0%
!! TTTTTGTAAACTTGATCTAC+TGG - chr1.3:22104341-22104360 None:intergenic 25.0%
!!! AAACACATCTAAGTTTTGAA+AGG - chr1.3:22103259-22103278 None:intergenic 25.0%
!!! AAGCATTGTTTTCTAATGAA+GGG - chr1.3:22104074-22104093 None:intergenic 25.0%
!!! GGTTGTTTTTACAAATACTA+AGG + chr1.3:22103955-22103974 MS.gene91120:intron 25.0%
!!! TTTTCTAGAATGTTGATATC+AGG + chr1.3:22104260-22104279 MS.gene91120:intron 25.0%
AAGCTTATGTTCATGATACA+GGG + chr1.3:22104596-22104615 MS.gene91120:intron 30.0%
AAGGAAAGAATCACTAGAAT+TGG - chr1.3:22104630-22104649 None:intergenic 30.0%
AATGGTGGTATAAAAGTTTC+TGG + chr1.3:22103552-22103571 MS.gene91120:intron 30.0%
ACAAGAACTATGTAACTAGA+TGG + chr1.3:22103934-22103953 MS.gene91120:intron 30.0%
AGATTTGAATTTCCGTGAAA+AGG + chr1.3:22104163-22104182 MS.gene91120:intron 30.0%
ATATCTCTATGTGGATATGA+AGG + chr1.3:22103074-22103093 MS.gene91120:intron 30.0%
ATATTTGTAGCTATTGGACA+TGG + chr1.3:22104932-22104951 MS.gene91120:CDS 30.0%
ATTATTACTCTCTACATCCA+TGG - chr1.3:22103207-22103226 None:intergenic 30.0%
CATTGACACGAAATTTATTC+AGG + chr1.3:22103575-22103594 MS.gene91120:intron 30.0%
GGATGTAGAGAGTAATAATA+TGG + chr1.3:22103208-22103227 MS.gene91120:CDS 30.0%
GTAGTATCAAATTTAGGAGT+TGG + chr1.3:22104896-22104915 MS.gene91120:CDS 30.0%
GTTCTTTATTCATCAACACT+TGG + chr1.3:22104758-22104777 MS.gene91120:CDS 30.0%
TAAGCTTATGTTCATGATAC+AGG + chr1.3:22104595-22104614 MS.gene91120:intron 30.0%
TAGACTAATACAAATGCTAG+GGG + chr1.3:22103609-22103628 MS.gene91120:intron 30.0%
TATCTCTATGTGGATATGAA+GGG + chr1.3:22103075-22103094 MS.gene91120:intron 30.0%
TCTATTCTCATATCAGATGA+TGG - chr1.3:22105094-22105113 None:intergenic 30.0%
TGCATTTCTACTTCATGTAA+TGG - chr1.3:22105022-22105041 None:intergenic 30.0%
! CACCTTTTCATGAATACAAA+GGG - chr1.3:22104125-22104144 None:intergenic 30.0%
! TAGCATTTAGCTTACTGTTA+TGG - chr1.3:22104040-22104059 None:intergenic 30.0%
! TCACCTTTTCATGAATACAA+AGG - chr1.3:22104126-22104145 None:intergenic 30.0%
! TGTCGTTTAATGATGAAGAT+TGG + chr1.3:22104867-22104886 MS.gene91120:CDS 30.0%
! TTTTCACGGAAATTCAAATC+TGG - chr1.3:22104164-22104183 None:intergenic 30.0%
!!! ACATCTAAGTTTTGAAAGGA+TGG - chr1.3:22103255-22103274 None:intergenic 30.0%
!!! ATTGCAGCTTTTTTTCTTGT+TGG - chr1.3:22103911-22103930 None:intergenic 30.0%
!!! CACTATTTTGACACTGTAAA+TGG + chr1.3:22104527-22104546 MS.gene91120:intron 30.0%
!!! GAAGCATTGTTTTCTAATGA+AGG - chr1.3:22104075-22104094 None:intergenic 30.0%
!!! GCTTTTTTTCTTGTTGGATT+AGG - chr1.3:22103905-22103924 None:intergenic 30.0%
ACAAGATTTGCAAAGAGAGT+GGG + chr1.3:22105166-22105185 MS.gene91120:CDS 35.0%
ACCATCTCCTAATGTGAAAA+CGG + chr1.3:22105042-22105061 MS.gene91120:CDS 35.0%
ACTATATTGCCTGGTTTCAT+TGG + chr1.3:22104470-22104489 MS.gene91120:intron 35.0%
ACTCTGATTGCAGTAAATAC+CGG + chr1.3:22103002-22103021 MS.gene91120:CDS 35.0%
AGATCACTTGTGATTGGAAT+GGG + chr1.3:22103407-22103426 MS.gene91120:CDS 35.0%
AGCCCTTTGTATTCATGAAA+AGG + chr1.3:22104120-22104139 MS.gene91120:intron 35.0%
ATAGGGAAGTTGTTTGATAC+CGG - chr1.3:22103024-22103043 None:intergenic 35.0%
ATTCTATTTGTCGCTGGTAA+TGG - chr1.3:22105142-22105161 None:intergenic 35.0%
CAAGAAGGATAATTGTCACT+CGG - chr1.3:22104653-22104672 None:intergenic 35.0%
GATAGTGATTGTTGCATGAA+AGG + chr1.3:22104722-22104741 MS.gene91120:CDS 35.0%
GTAAAGATTCTATTTGTCGC+TGG - chr1.3:22105148-22105167 None:intergenic 35.0%
GTGGAGATATTTGTAGCTAT+TGG + chr1.3:22104926-22104945 MS.gene91120:CDS 35.0%
TACAAGATTTGCAAAGAGAG+TGG + chr1.3:22105165-22105184 MS.gene91120:CDS 35.0%
TATCAGTTAAGGTGAAAGGA+TGG - chr1.3:22103479-22103498 None:intergenic 35.0%
TATGTTCATGATACAGGGAT+TGG + chr1.3:22104601-22104620 MS.gene91120:intron 35.0%
TGATGTGAACTTTACTGAGT+TGG + chr1.3:22103343-22103362 MS.gene91120:CDS 35.0%
TTTGAAAGGATGGTAAGCAT+TGG - chr1.3:22103245-22103264 None:intergenic 35.0%
TTTGTCTACAAGTTCTCTCT+CGG - chr1.3:22104395-22104414 None:intergenic 35.0%
! AAGGAACGATTTGAGATTTG+TGG - chr1.3:22103386-22103405 None:intergenic 35.0%
! CAATTTTTGTGTCAGTCGAT+GGG - chr1.3:22104997-22105016 None:intergenic 35.0%
! GGAGTGTCTGACAATATATA+TGG - chr1.3:22104286-22104305 None:intergenic 35.0%
! TCAATTTTTGTGTCAGTCGA+TGG - chr1.3:22104998-22105017 None:intergenic 35.0%
!! TGCTGATGCTTTGAAGAAAT+TGG + chr1.3:22104222-22104241 MS.gene91120:intron 35.0%
AAACAGAGAAACACGAGGTA+AGG - chr1.3:22103159-22103178 None:intergenic 40.0%
AAGGATAATTGTCACTCGGA+AGG - chr1.3:22104649-22104668 None:intergenic 40.0%
AATACAAAGGGCTTCTAAGC+CGG - chr1.3:22104113-22104132 None:intergenic 40.0%
AGAAGGTCCTTCACATGTAT+AGG - chr1.3:22104681-22104700 None:intergenic 40.0%
AGCTATTCCCAAGAGAATCA+TGG - chr1.3:22103439-22103458 None:intergenic 40.0%
AGTTTCCTACTACTGTAGAG+AGG - chr1.3:22104011-22104030 None:intergenic 40.0%
ATCCAAGACTGAATGAGAGA+AGG - chr1.3:22103119-22103138 None:intergenic 40.0%
ATGCAACAATCACTATCCTC+AGG - chr1.3:22104719-22104738 None:intergenic 40.0%
CATGTATAGGCTAACCAAGA+AGG - chr1.3:22104668-22104687 None:intergenic 40.0%
CCATTCTTGACAACAAGTGA+TGG - chr1.3:22105118-22105137 None:intergenic 40.0%
CGAGTGACAATTATCCTTCT+TGG + chr1.3:22104651-22104670 MS.gene91120:CDS 40.0%
CTCTACAGTAGTAGGAAACT+AGG + chr1.3:22104011-22104030 MS.gene91120:intron 40.0%
CTGTGTCTTGCTTGTAAATC+TGG - chr1.3:22104844-22104863 None:intergenic 40.0%
GAAACTGATCCAATGAAACC+AGG - chr1.3:22104482-22104501 None:intergenic 40.0%
GAAAGTGAAAGCTGTCTTGT+TGG + chr1.3:22104434-22104453 MS.gene91120:intron 40.0%
GAAGTTCCCATGATTCTCTT+GGG + chr1.3:22103429-22103448 MS.gene91120:CDS 40.0%
GAGATCACTTGTGATTGGAA+TGG + chr1.3:22103406-22103425 MS.gene91120:CDS 40.0%
GAGTTAGTTGAATCTCTGAG+TGG - chr1.3:22103292-22103311 None:intergenic 40.0%
GAGTTGGAAACAACATCACA+TGG + chr1.3:22103359-22103378 MS.gene91120:CDS 40.0%
GCTATTCCCAAGAGAATCAT+GGG - chr1.3:22103438-22103457 None:intergenic 40.0%
TACTGCAATCAGAGTTGTCA+AGG - chr1.3:22102997-22103016 None:intergenic 40.0%
TCCAATCACAAGTGATCTCA+AGG - chr1.3:22103405-22103424 None:intergenic 40.0%
TCCTTGAGATCACTTGTGAT+TGG + chr1.3:22103401-22103420 MS.gene91120:CDS 40.0%
TCTTTCCTCTCTACAGTAGT+AGG + chr1.3:22104003-22104022 MS.gene91120:intron 40.0%
TGGATTGACTGTTAAGGAGA+CGG + chr1.3:22104952-22104971 MS.gene91120:CDS 40.0%
TTACCTCGTGTTTCTCTGTT+TGG + chr1.3:22103158-22103177 MS.gene91120:CDS 40.0%
TTCATCAACACTTGGAAACG+TGG + chr1.3:22104766-22104785 MS.gene91120:CDS 40.0%
TTCCTTCTCTCATTCAGTCT+TGG + chr1.3:22103114-22103133 MS.gene91120:intron 40.0%
! AAAGCTGTCTTGTTGGAAAG+CGG + chr1.3:22104441-22104460 MS.gene91120:intron 40.0%
! TCCGTTTTCACATTAGGAGA+TGG - chr1.3:22105046-22105065 None:intergenic 40.0%
! TGCATTGTCTCTAGTTTCCA+TGG + chr1.3:22103187-22103206 MS.gene91120:CDS 40.0%
! TGGACATGGATTGACTGTTA+AGG + chr1.3:22104946-22104965 MS.gene91120:CDS 40.0%
!! CCATCACTTGTTGTCAAGAA+TGG + chr1.3:22105115-22105134 MS.gene91120:CDS 40.0%
!! CGAGGTAAGGAATTTCTAGT+TGG - chr1.3:22103146-22103165 None:intergenic 40.0%
!! CTTCAAGTTGTTACTTACGC+CGG + chr1.3:22104091-22104110 MS.gene91120:intron 40.0%
!! TGGTTAGCCTATACATGTGA+AGG + chr1.3:22104671-22104690 MS.gene91120:CDS 40.0%
!! TTTAGGAGTTGGTGACAATG+TGG + chr1.3:22104907-22104926 MS.gene91120:CDS 40.0%
AATCACTATCCTCAGGCACT+TGG - chr1.3:22104712-22104731 None:intergenic 45.0%
CGGAAAGGAACTATATTGCC+TGG + chr1.3:22104461-22104480 MS.gene91120:intron 45.0%
GGAAGTTCCCATGATTCTCT+TGG + chr1.3:22103428-22103447 MS.gene91120:CDS 45.0%
TCTTGGGAATAGCTTAGCAC+AGG + chr1.3:22103445-22103464 MS.gene91120:CDS 45.0%
TTTACCTCCTCTTCAGCTGA+TGG - chr1.3:22105070-22105089 None:intergenic 45.0%
! GATGGCTCCGTTTTCACATT+AGG - chr1.3:22105052-22105071 None:intergenic 45.0%
! GGCACTTGGAAAAGTACAGA+AGG - chr1.3:22104698-22104717 None:intergenic 45.0%
! TGTACTTTTCCAAGTGCCTG+AGG + chr1.3:22104700-22104719 MS.gene91120:CDS 45.0%
! TGTCTTGTTGGAAAGCGGAA+AGG + chr1.3:22104446-22104465 MS.gene91120:intron 45.0%
CCACCAAACAGAGAAACACG+AGG - chr1.3:22103164-22103183 None:intergenic 50.0%
CCTCGTGTTTCTCTGTTTGG+TGG + chr1.3:22103161-22103180 MS.gene91120:CDS 50.0%
AACGGAGCCATCAGCTGAAG+AGG + chr1.3:22105060-22105079 MS.gene91120:CDS 55.0%
GGAGCCATCAGCTGAAGAGG+AGG + chr1.3:22105063-22105082 MS.gene91120:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 22102987 22105216 22102987 ID=MS.gene91120
chr1.3 mRNA 22102987 22105216 22102987 ID=MS.gene91120.t1;Parent=MS.gene91120
chr1.3 exon 22102987 22103049 22102987 ID=MS.gene91120.t1.exon1;Parent=MS.gene91120.t1
chr1.3 CDS 22102987 22103049 22102987 ID=cds.MS.gene91120.t1;Parent=MS.gene91120.t1
chr1.3 exon 22103131 22103466 22103131 ID=MS.gene91120.t1.exon2;Parent=MS.gene91120.t1
chr1.3 CDS 22103131 22103466 22103131 ID=cds.MS.gene91120.t1;Parent=MS.gene91120.t1
chr1.3 exon 22104617 22105216 22104617 ID=MS.gene91120.t1.exon3;Parent=MS.gene91120.t1
chr1.3 CDS 22104617 22105216 22104617 ID=cds.MS.gene91120.t1;Parent=MS.gene91120.t1
Gene Sequence

>MS.gene91120

ATGGAATCCTTGACAACTCTGATTGCAGTAAATACCGGTATCAAACAACTTCCCTATTCAATAGTAAGATCAAAAAGCATTGGATATATATCTCTATGTGGATATGAAGGGTTATCATGTGATGTTTTTCCTTCTCTCATTCAGTCTTGGATGTCACCAACTAGAAATTCCTTACCTCGTGTTTCTCTGTTTGGTGGCAATGCATTGTCTCTAGTTTCCATGGATGTAGAGAGTAATAATATGGGCTATCAGTCACCAATGCTTACCATCCTTTCAAAACTTAGATGTGTTTGGATTCAATGCCACTCAGAGATTCAACTAACTCAAGAATTAAGAAGATTTGTTGATGATCTATATGATGTGAACTTTACTGAGTTGGAAACAACATCACATGGACCACAAATCTCAAATCGTTCCTTGAGATCACTTGTGATTGGAATGGGAAGTTCCCATGATTCTCTTGGGAATAGCTTAGCACAGGTTCTTTCTCCATCCTTTCACCTTAACTGATATTTACTATTAATTAAGAGAACATGGAATGCTCTTTTTTTCCTTTATTTCATTAAATGGTGGTATAAAAGTTTCTGGCATTGACACGAAATTTATTCAGGTTTCTATTAAATAGACTAATACAAATGCTAGGGGTTAGACGTGTAACACATAAGTGAAGTAAATTTTGAGATAATTACATCTTTTTTTCATTTTCTACGTATCACGTTTCTTTTACTGTATCTCCGTTACGTTGATTTGTTTAAAGTCTATGTTTGACACATAAAACATGTTTAACTTAAGAAGGATAAATGAATAATAAAATTATATTATTGTTGATGTGAATTATATATTGAATCTTCTTATTAAAAAATACAAAAGCACTAATTCAACAGCTGTTTATTTAAATAAAATTTATAGTATACACCTAATCCAACAAGAAAAAAAGCTGCAATCTAACAAGAACTATGTAACTAGATGGTTGTTTTTACAAATACTAAGGTTTAAAAGCTTTAGTATATGGTGTTTCTTTCCTCTCTACAGTAGTAGGAAACTAGGAATCCATAACAGTAAGCTAAATGCTACTATAATGTTACCCTTCATTAGAAAACAATGCTTCAAGTTGTTACTTACGCCGGCTTAGAAGCCCTTTGTATTCATGAAAAGGTGATTTACTTGCTATTTGCCAGATTTGAATTTCCGTGAAAAGGAAACAAATTATTATATATAATTGACTATAGTACGATTGCTGATGCTTTGAAGAAATTGGAATAAAATGAAGGTATTTTCTAGAATGTTGATATCAGGCCATATATATTGTCAGACACTCCTCAAAGAAGAGAATAAAAGTAGCAGTAATGTGCCAGTAGATCAAGTTTACAAAAATTCTTTCGAATAGAATGATAAGATCACAAAACCGAGAGAGAACTTGTAGACAAACATATATATGTTAATTTTAGAAAGTGAAAGCTGTCTTGTTGGAAAGCGGAAAGGAACTATATTGCCTGGTTTCATTGGATCAGTTTCCTTCTATACATTTTTCTGTGTATTACACTATTTTGACACTGTAAATGGCAGAAAATGTCAATTTGCATAACATAATCAGAATTACATATATACTAAGCTTATGTTCATGATACAGGGATTGGCAACCAATTCTAGTGATTCTTTCCTTCCGAGTGACAATTATCCTTCTTGGTTAGCCTATACATGTGAAGGACCTTCTGTACTTTTCCAAGTGCCTGAGGATAGTGATTGTTGCATGAAAGGAATAACTTTGTGTGTTCTTTATTCATCAACACTTGGAAACGTGGCGAATGAATGTGTCACTAGTGTCTTGATCATTAACTACACAAAACTCACTATCCAGATTTACAAGCAAGACACAGTAATGTCGTTTAATGATGAAGATTGGAAAGGTGTAGTATCAAATTTAGGAGTTGGTGACAATGTGGAGATATTTGTAGCTATTGGACATGGATTGACTGTTAAGGAGACGGCTGTCTATCTAATATATGACCCATCGACTGACACAAAAATTGAGCCATTACATGAAGTAGAAATGCAACCATCTCCTAATGTGAAAACGGAGCCATCAGCTGAAGAGGAGGTAAAACCATCATCTGATATGAGAATAGAACCATCACTTGTTGTCAAGAATGGACCATTACCAGCGACAAATAGAATCTTTACAAGATTTGCAAAGAGAGTGGGAAAATGTTTATGCTTGAACAAAAATTGA
Protein sequence

>MS.gene91120.t1

MESLTTLIAVNTGIKQLPYSISWMSPTRNSLPRVSLFGGNALSLVSMDVESNNMGYQSPMLTILSKLRCVWIQCHSEIQLTQELRRFVDDLYDVNFTELETTSHGPQISNRSLRSLVIGMGSSHDSLGNSLAQGLATNSSDSFLPSDNYPSWLAYTCEGPSVLFQVPEDSDCCMKGITLCVLYSSTLGNVANECVTSVLIINYTKLTIQIYKQDTVMSFNDEDWKGVVSNLGVGDNVEIFVAIGHGLTVKETAVYLIYDPSTDTKIEPLHEVEMQPSPNVKTEPSAEEEVKPSSDMRIEPSLVVKNGPLPATNRIFTRFAKRVGKCLCLNKN