AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050558


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050558.t1 MTR_7g115670 95.572 271 7 2 1 271 1 266 0.0 518
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050558.t1 AT1G08640 59.707 273 96 4 1 270 13 274 1.18e-107 313

Find 48 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCTTTGCTTTCGTTTAT+AGG 0.144704 7.4:-2148752 MS.gene050558:CDS
GAAGAAGCAGAGATGATTAT+TGG 0.153927 7.4:+2151363 None:intergenic
AAAGAAGGAAGCTGAGATTA+AGG 0.221315 7.4:-2151126 MS.gene050558:CDS
ACCTGAGAGAGGTTGAAAAT+TGG 0.242506 7.4:+2151482 None:intergenic
CTTGGTCCCCAAGGTATAAT+TGG 0.268204 7.4:+2149430 None:intergenic
ACTGCTCCGGTCGCTGGCCT+TGG 0.308462 7.4:-2148516 MS.gene050558:CDS
TGTTGTTGTTGTTGAATTTA+GGG 0.323553 7.4:+2151533 None:intergenic
TCAGTTGAGTAATCGGAAAA+AGG 0.325391 7.4:-2150040 MS.gene050558:CDS
ATCGTGTCAAATTTCTCAAT+AGG 0.342314 7.4:+2151170 None:intergenic
TCGTGTCAAATTTCTCAATA+GGG 0.363102 7.4:+2151171 None:intergenic
CCTGAGAGAGGTTGAAAATT+GGG 0.377207 7.4:+2151483 None:intergenic
AAGAAGCAGAGATGATTATT+GGG 0.389670 7.4:+2151364 None:intergenic
TCTTCTTCTGCATCTGCTGC+AGG 0.410429 7.4:-2151336 MS.gene050558:CDS
TGATGGCTCAGTTGAGTAAT+CGG 0.411340 7.4:-2150047 MS.gene050558:CDS
ATGTATAGCTGTTTCATCCT+TGG 0.412262 7.4:-2148486 MS.gene050558:intron
AAAGAGACTGCTCCGGTCGC+TGG 0.428177 7.4:-2148522 MS.gene050558:CDS
CCCATACGCAGTCCTTCTCC+TGG 0.433111 7.4:+2148545 None:intergenic
AAGAAGGAAGCTGAGATTAA+GGG 0.453722 7.4:-2151125 MS.gene050558:CDS
TATTGAGTAGCTACCTCATA+AGG 0.456840 7.4:+2151285 None:intergenic
CAAACAGCCAATTATACCTT+GGG 0.467405 7.4:-2149437 MS.gene050558:CDS
GGCATATGACAAAGTTATGA+TGG 0.471615 7.4:-2150064 MS.gene050558:CDS
CAGGAAGATGGTGAAGATCC+AGG 0.474884 7.4:-2148563 MS.gene050558:CDS
ATCTCTTCTTTACAACAGTC+AGG 0.475809 7.4:-2147578 MS.gene050558:CDS
CGGTGACTTCAATCCTTATG+AGG 0.484013 7.4:-2151298 MS.gene050558:intron
TCCAGGAGAAGGACTGCGTA+TGG 0.496377 7.4:-2148546 MS.gene050558:CDS
TTGTCTTTCTGCAGACAGCT+TGG 0.506000 7.4:-2148818 MS.gene050558:intron
AAATTGGGAACGGAAATAGT+TGG 0.518850 7.4:+2151498 None:intergenic
TAAGGATTGAAGTCACCGTT+AGG 0.528101 7.4:+2151303 None:intergenic
TGACTGTTGTAAAGAAGAGA+TGG 0.528342 7.4:+2147580 None:intergenic
AAATTGAATGCAGGTTTCAA+AGG 0.532979 7.4:-2149476 MS.gene050558:intron
AATGTTGATCCAGCTCGAAA+AGG 0.548403 7.4:-2150085 MS.gene050558:intron
TATGAAACTCACATTAATTG+TGG 0.549027 7.4:+2148689 None:intergenic
GGTTTCCCAAGAAAACATCA+TGG 0.552983 7.4:-2151392 MS.gene050558:CDS
CAATTATACCTTGGGGACCA+AGG 0.553731 7.4:-2149429 MS.gene050558:intron
ACAAACAGCCAATTATACCT+TGG 0.553845 7.4:-2149438 MS.gene050558:CDS
AACATAGTTGAGTCTGCAAG+TGG 0.554259 7.4:-2147610 MS.gene050558:CDS
AAATGATGTGCGCATCAACT+TGG 0.557136 7.4:-2148919 MS.gene050558:CDS
CCAGGAGAAGGACTGCGTAT+GGG 0.593890 7.4:-2148545 MS.gene050558:CDS
GTATGGGAAAGAGACTGCTC+CGG 0.601329 7.4:-2148529 MS.gene050558:CDS
GACTGTTGTAAAGAAGAGAT+GGG 0.602985 7.4:+2147581 None:intergenic
GATGGTGAAGATCCAGGAGA+AGG 0.603751 7.4:-2148557 MS.gene050558:CDS
ATAACAAACCTTGGTCCCCA+AGG 0.616918 7.4:+2149421 None:intergenic
GCAGGAAGCACTAATCCTAA+CGG 0.643511 7.4:-2151318 MS.gene050558:CDS
AAGCCTATAAACGAAAGCAA+AGG 0.649140 7.4:+2148749 None:intergenic
TAATGTTGGATACAGGAAGA+TGG 0.650849 7.4:-2148575 MS.gene050558:intron
GAGAGGTTGAAAATTGGGAA+CGG 0.656054 7.4:+2151488 None:intergenic
GAGTGAGTGTTACCTGAGAG+AGG 0.667674 7.4:+2151471 None:intergenic
AAACAGCCAATTATACCTTG+GGG 0.721557 7.4:-2149436 MS.gene050558:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAATAAAAAATAACAT+TGG + chr7.4:2148128-2148147 None:intergenic 10.0%
!! AAGAAAAACATATAACTATA+TGG + chr7.4:2148994-2149013 None:intergenic 15.0%
!! ATTTAAATACAAATTACTCA+TGG + chr7.4:2149968-2149987 None:intergenic 15.0%
!! GATGTTAAAAAAAATATTGA+AGG - chr7.4:2148512-2148531 MS.gene050558:CDS 15.0%
!! TGTAATATGATAGAATAATA+AGG + chr7.4:2147908-2147927 None:intergenic 15.0%
!!! AATTTTAAAGAAGAAATTTG+TGG - chr7.4:2151150-2151169 MS.gene050558:CDS 15.0%
!!! AATTTTCATTTAATCTTTGT+TGG - chr7.4:2151109-2151128 MS.gene050558:CDS 15.0%
!!! ATTATTGTTGTATAGATTTT+AGG - chr7.4:2147938-2147957 MS.gene050558:intron 15.0%
!!! GAAATAATTAAAAGCATTAT+GGG + chr7.4:2148947-2148966 None:intergenic 15.0%
!!! TAATTATTTCGTTTTTTATG+AGG - chr7.4:2148957-2148976 MS.gene050558:intron 15.0%
!!! TGGTTTTTAAATTTTCTAAT+GGG - chr7.4:2148386-2148405 MS.gene050558:intron 15.0%
!! AAGCAAATAAACAAAATGTT+AGG + chr7.4:2149620-2149639 None:intergenic 20.0%
!! AGAAACTATTAATCTTTATC+TGG + chr7.4:2151473-2151492 None:intergenic 20.0%
!! AGAAATTAAAATCGATTGAA+AGG + chr7.4:2148575-2148594 None:intergenic 20.0%
!! AGACAAAAACAAAATGAAAA+AGG - chr7.4:2148285-2148304 MS.gene050558:intron 20.0%
!! AGATAAAGATTAATAGTTTC+TGG - chr7.4:2151472-2151491 MS.gene050558:intron 20.0%
!! AGCAAATAAACAAAATGTTA+GGG + chr7.4:2149619-2149638 None:intergenic 20.0%
!! ATAAGAAAATAGAAAACTTC+AGG + chr7.4:2151414-2151433 None:intergenic 20.0%
!! ATAATGATTAATCGTATTCT+TGG + chr7.4:2149469-2149488 None:intergenic 20.0%
!! GAAATTAAAATCGATTGAAA+GGG + chr7.4:2148574-2148593 None:intergenic 20.0%
!! GACAAAAACAAAATGAAAAA+GGG - chr7.4:2148286-2148305 MS.gene050558:intron 20.0%
!! GTAATCTACAATAATTAACA+AGG - chr7.4:2150746-2150765 MS.gene050558:intron 20.0%
!! TAATTCAACATGGTTAAAAA+TGG + chr7.4:2150512-2150531 None:intergenic 20.0%
!! TGTCATGATGAAAAATAATT+TGG + chr7.4:2151067-2151086 None:intergenic 20.0%
!! TTAATTATTGTAGATTACAG+AGG + chr7.4:2150744-2150763 None:intergenic 20.0%
!!! AATTTTGTATACGAAGAATT+TGG - chr7.4:2149383-2149402 MS.gene050558:intron 20.0%
!!! ACAGATTTTCATATACTTAA+GGG + chr7.4:2148199-2148218 None:intergenic 20.0%
!!! ATATTTTCTAAATTGAATGC+AGG - chr7.4:2149653-2149672 MS.gene050558:intron 20.0%
!!! ATTCTAAGATTGTATTGAAT+AGG + chr7.4:2150486-2150505 None:intergenic 20.0%
!!! ATTCTATTGATAATTCAACA+TGG + chr7.4:2150522-2150541 None:intergenic 20.0%
!!! ATTTATTTTCATCTACAGTT+TGG - chr7.4:2149990-2150009 MS.gene050558:intron 20.0%
!!! ATTTTGTATACGAAGAATTT+GGG - chr7.4:2149384-2149403 MS.gene050558:intron 20.0%
!!! CGAAATAATTAAAAGCATTA+TGG + chr7.4:2148948-2148967 None:intergenic 20.0%
!!! CTGGTTTTTAAATTTTCTAA+TGG - chr7.4:2148385-2148404 MS.gene050558:intron 20.0%
!!! GAAAAGTATGAGTATAAATA+GGG - chr7.4:2148442-2148461 MS.gene050558:intron 20.0%
!!! GGCAAAAAAATTTTTGATTT+TGG - chr7.4:2148096-2148115 MS.gene050558:intron 20.0%
!!! TGAAAAGTATGAGTATAAAT+AGG - chr7.4:2148441-2148460 MS.gene050558:intron 20.0%
!!! TGTCTTTTTAAAGAAAAAGA+TGG - chr7.4:2150801-2150820 MS.gene050558:intron 20.0%
! AAAATGTTAGGGTGAAATAT+TGG + chr7.4:2149608-2149627 None:intergenic 25.0%
! AAATGTTAGGGTGAAATATT+GGG + chr7.4:2149607-2149626 None:intergenic 25.0%
! AGCAGTAATAAAAGAGTAAT+TGG + chr7.4:2149904-2149923 None:intergenic 25.0%
! AGCATATACTAAGAAAAAGA+AGG - chr7.4:2147997-2148016 MS.gene050558:intron 25.0%
! AGTATAAATAGGGTATGTTT+GGG - chr7.4:2148452-2148471 MS.gene050558:intron 25.0%
! ATAATGTCAAAAAATCCAAG+TGG + chr7.4:2150159-2150178 None:intergenic 25.0%
! ATGGCATGTTTAATTCATAA+GGG + chr7.4:2149949-2149968 None:intergenic 25.0%
! ATGGTTGAATTGTGTTAATT+AGG - chr7.4:2149855-2149874 MS.gene050558:intron 25.0%
! ATTAGTTAGTTAACATACTC+TGG + chr7.4:2148056-2148075 None:intergenic 25.0%
! TATGAAACTCACATTAATTG+TGG + chr7.4:2150452-2150471 None:intergenic 25.0%
! TCTTCGTATACAAAATTGAT+AGG + chr7.4:2149380-2149399 None:intergenic 25.0%
! TGGGGGAATTAATTTATTTA+AGG + chr7.4:2149544-2149563 None:intergenic 25.0%
! TGTCAAAATATCATTTCTCT+GGG - chr7.4:2151035-2151054 MS.gene050558:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7.4:2150931-2150950 MS.gene050558:intron 25.0%
! TTGACTATCAATATGGTTTA+GGG + chr7.4:2148170-2148189 None:intergenic 25.0%
! TTGTCAAAATATCATTTCTC+TGG - chr7.4:2151034-2151053 MS.gene050558:intron 25.0%
! TTTAAAGAAGAAATTTGTGG+CGG - chr7.4:2151153-2151172 MS.gene050558:CDS 25.0%
!! AAATTTAATGTACTGACACA+TGG - chr7.4:2149014-2149033 MS.gene050558:intron 25.0%
!! AATTTAATGTACTGACACAT+GGG - chr7.4:2149015-2149034 MS.gene050558:intron 25.0%
!! GACAGATTTTCATATACTTA+AGG + chr7.4:2148200-2148219 None:intergenic 25.0%
!! TGTTGTTGTTGTTGAATTTA+GGG + chr7.4:2147608-2147627 None:intergenic 25.0%
!! TTATTCCATGATGTTTTCTT+GGG + chr7.4:2147754-2147773 None:intergenic 25.0%
!! TTCATGAATCATGATAATGT+TGG - chr7.4:2150549-2150568 MS.gene050558:intron 25.0%
!! TTGTTGTTGTTGTTGAATTT+AGG + chr7.4:2147609-2147628 None:intergenic 25.0%
!! TTTTGTGAGTAGTAAATGAA+CGG - chr7.4:2150255-2150274 MS.gene050558:intron 25.0%
!!! AGATACTTCTTAGTTTGTTT+TGG - chr7.4:2149217-2149236 MS.gene050558:intron 25.0%
!!! AGTGTTTTTTTAGAAGAAGA+AGG + chr7.4:2147696-2147715 None:intergenic 25.0%
!!! ATTGTTTTTGACCAATAAGA+AGG + chr7.4:2150932-2150951 None:intergenic 25.0%
!!! CATTGTAATGAAAAGTGTTA+AGG + chr7.4:2149437-2149456 None:intergenic 25.0%
!!! TTAACTCTTCTCTATTTTTC+TGG - chr7.4:2148075-2148094 MS.gene050558:intron 25.0%
!!! TTGTTTTTGACCAATAAGAA+GGG + chr7.4:2150931-2150950 None:intergenic 25.0%
AAAAAACACTGCTTTCTTAC+TGG - chr7.4:2147706-2147725 MS.gene050558:intron 30.0%
AAAAACACTGCTTTCTTACT+GGG - chr7.4:2147707-2147726 MS.gene050558:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr7.4:2150944-2150963 MS.gene050558:intron 30.0%
AAATTGAATGCAGGTTTCAA+AGG - chr7.4:2149662-2149681 MS.gene050558:intron 30.0%
AACATGATGAAATTTGACAG+TGG + chr7.4:2150074-2150093 None:intergenic 30.0%
AAGAAGCAGAGATGATTATT+GGG + chr7.4:2147777-2147796 None:intergenic 30.0%
AATAAGAAGGGAGAAAAACA+AGG + chr7.4:2150919-2150938 None:intergenic 30.0%
AATATAGCATAGATGATGTG+GGG + chr7.4:2149562-2149581 None:intergenic 30.0%
AATGTTAGGGTGAAATATTG+GGG + chr7.4:2149606-2149625 None:intergenic 30.0%
ACAATATAGCATAGATGATG+TGG + chr7.4:2149564-2149583 None:intergenic 30.0%
ACTCTTCCACTAAAGTAAAA+CGG + chr7.4:2150854-2150873 None:intergenic 30.0%
AGAAAAGAATAGAGACCTTA+AGG + chr7.4:2148797-2148816 None:intergenic 30.0%
ATCGTGTCAAATTTCTCAAT+AGG + chr7.4:2147971-2147990 None:intergenic 30.0%
CAAATTTGTAGAAAGTCACT+TGG + chr7.4:2148923-2148942 None:intergenic 30.0%
CAATATAGCATAGATGATGT+GGG + chr7.4:2149563-2149582 None:intergenic 30.0%
CAATTCAACCATAAAGTTTG+TGG + chr7.4:2149847-2149866 None:intergenic 30.0%
CATGGCATGTTTAATTCATA+AGG + chr7.4:2149950-2149969 None:intergenic 30.0%
GACAATTGAACTGAAATACT+GGG - chr7.4:2148658-2148677 MS.gene050558:intron 30.0%
GAGTATAAATAGGGTATGTT+TGG - chr7.4:2148451-2148470 MS.gene050558:intron 30.0%
GTGAGTTTCATATTCTATGA+CGG - chr7.4:2150460-2150479 MS.gene050558:intron 30.0%
GTTGACTATCAATATGGTTT+AGG + chr7.4:2148171-2148190 None:intergenic 30.0%
TCAACAAAGCTGTCATTAAA+TGG + chr7.4:2150893-2150912 None:intergenic 30.0%
TCGTGTCAAATTTCTCAATA+GGG + chr7.4:2147970-2147989 None:intergenic 30.0%
TCTCTAACATCTTAATAGCA+GGG - chr7.4:2148227-2148246 MS.gene050558:intron 30.0%
TTGATGTGTTATGCATTCAT+TGG - chr7.4:2149275-2149294 MS.gene050558:intron 30.0%
! AACCACTTTATGACAACTTT+TGG + chr7.4:2151016-2151035 None:intergenic 30.0%
! AATTATTGCTGCTTCATCAA+AGG + chr7.4:2149305-2149324 None:intergenic 30.0%
! ACATTAATTGTGGAGCTTTT+CGG + chr7.4:2150442-2150461 None:intergenic 30.0%
! ATCATGATAATGTTGGATAC+AGG - chr7.4:2150556-2150575 MS.gene050558:intron 30.0%
! ATTTTCATCTACAGTTTGGT+AGG - chr7.4:2149994-2150013 MS.gene050558:intron 30.0%
! GAGTAAGTTGACTATCAATA+TGG + chr7.4:2148177-2148196 None:intergenic 30.0%
! GTCTCTATTCTTTTCTTCTA+AGG - chr7.4:2148801-2148820 MS.gene050558:CDS 30.0%
! GTTATTCCATGATGTTTTCT+TGG + chr7.4:2147755-2147774 None:intergenic 30.0%
! GTTTTGTGTGCAATTTCAAA+TGG + chr7.4:2149177-2149196 None:intergenic 30.0%
! TGATGATTCATCTGATCTTT+TGG - chr7.4:2150677-2150696 MS.gene050558:intron 30.0%
! TGGATCATTTAAGGTAAAGT+AGG - chr7.4:2149131-2149150 MS.gene050558:intron 30.0%
! TGTGACTTTTGGATCATTTA+AGG - chr7.4:2149122-2149141 MS.gene050558:intron 30.0%
!! TTGTTTTTCTCCCTTCTTAT+TGG - chr7.4:2150918-2150937 MS.gene050558:intron 30.0%
!!! TTTCTGGTACATTTTTTTGC+AGG - chr7.4:2151488-2151507 MS.gene050558:CDS 30.0%
AAACAGCCAATTATACCTTG+GGG - chr7.4:2149702-2149721 MS.gene050558:intron 35.0%
AAAGAAGGAAGCTGAGATTA+AGG - chr7.4:2148012-2148031 MS.gene050558:intron 35.0%
AAATTGGGAACGGAAATAGT+TGG + chr7.4:2147643-2147662 None:intergenic 35.0%
AACTACCACACATAACCTTA+AGG - chr7.4:2148779-2148798 MS.gene050558:CDS 35.0%
AAGAAGGAAGCTGAGATTAA+GGG - chr7.4:2148013-2148032 MS.gene050558:intron 35.0%
AAGCAATAACATGCCAAGTT+TGG + chr7.4:2151236-2151255 None:intergenic 35.0%
AAGCCTATAAACGAAAGCAA+AGG + chr7.4:2150392-2150411 None:intergenic 35.0%
ACAAACAGCCAATTATACCT+TGG - chr7.4:2149700-2149719 MS.gene050558:intron 35.0%
ACCATGTGAGTTGTACTTAA+GGG + chr7.4:2148625-2148644 None:intergenic 35.0%
AGCTATACATCCAAAAACCA+AGG + chr7.4:2150642-2150661 None:intergenic 35.0%
ATATAGCATAGATGATGTGG+GGG + chr7.4:2149561-2149580 None:intergenic 35.0%
ATGTTAGGGTGAAATATTGG+GGG + chr7.4:2149605-2149624 None:intergenic 35.0%
CAAAATATCATTTCTCTGGG+TGG - chr7.4:2151038-2151057 MS.gene050558:intron 35.0%
CAAACAGCCAATTATACCTT+GGG - chr7.4:2149701-2149720 MS.gene050558:intron 35.0%
CACAAAACATGAAGACATGA+CGG - chr7.4:2149189-2149208 MS.gene050558:intron 35.0%
CAGTTGAGTAATCGGAAAAA+GGG - chr7.4:2149099-2149118 MS.gene050558:intron 35.0%
CCAAAAGTCCACAAACTTTA+TGG - chr7.4:2149836-2149855 MS.gene050558:intron 35.0%
CTCTTCCACTAAAGTAAAAC+GGG + chr7.4:2150853-2150872 None:intergenic 35.0%
GAAGAAGCAGAGATGATTAT+TGG + chr7.4:2147778-2147797 None:intergenic 35.0%
GATGAAATTTGACAGTGGAA+AGG + chr7.4:2150069-2150088 None:intergenic 35.0%
GGACAATTGAACTGAAATAC+TGG - chr7.4:2148657-2148676 MS.gene050558:intron 35.0%
GGCATATGACAAAGTTATGA+TGG - chr7.4:2149074-2149093 MS.gene050558:intron 35.0%
GTCCAAAAGTTGTCATAAAG+TGG - chr7.4:2151011-2151030 MS.gene050558:intron 35.0%
GTCTCTAACATCTTAATAGC+AGG - chr7.4:2148226-2148245 MS.gene050558:intron 35.0%
TAATGTTGGATACAGGAAGA+TGG - chr7.4:2150563-2150582 MS.gene050558:intron 35.0%
TACCATGTGAGTTGTACTTA+AGG + chr7.4:2148626-2148645 None:intergenic 35.0%
TAGCCTTTGCTTTCGTTTAT+AGG - chr7.4:2150386-2150405 MS.gene050558:intron 35.0%
TATTGAGTAGCTACCTCATA+AGG + chr7.4:2147856-2147875 None:intergenic 35.0%
TCAGATGAATCATCATACCA+AGG + chr7.4:2150672-2150691 None:intergenic 35.0%
TCAGTTGAGTAATCGGAAAA+AGG - chr7.4:2149098-2149117 MS.gene050558:intron 35.0%
TCTCTGATATCCCAGTTTAT+GGG - chr7.4:2150718-2150737 MS.gene050558:intron 35.0%
TGACAAGCAATAACAAACCT+TGG + chr7.4:2149729-2149748 None:intergenic 35.0%
TGTAAAGACTAGAGACCTTA+AGG + chr7.4:2148856-2148875 None:intergenic 35.0%
TTAAGGTTATGTGTGGTAGT+TGG + chr7.4:2148780-2148799 None:intergenic 35.0%
TTCTCTGATATCCCAGTTTA+TGG - chr7.4:2150717-2150736 MS.gene050558:intron 35.0%
TTGTACTTCGATGCAATTTC+AGG - chr7.4:2150179-2150198 MS.gene050558:intron 35.0%
TTGTAGAAAGTCACTTGGTT+TGG + chr7.4:2148918-2148937 None:intergenic 35.0%
TTGTATACGAAGAATTTGGG+AGG - chr7.4:2149387-2149406 MS.gene050558:intron 35.0%
! AAAGTTTGTGGACTTTTGGA+GGG + chr7.4:2149835-2149854 None:intergenic 35.0%
! AAATAGGGTATGTTTGGGTT+TGG - chr7.4:2148457-2148476 MS.gene050558:intron 35.0%
! ACTTGGCATGTTATTGCTTT+TGG - chr7.4:2151237-2151256 MS.gene050558:intron 35.0%
! ATGTATAGCTGTTTCATCCT+TGG - chr7.4:2150652-2150671 MS.gene050558:intron 35.0%
! ATTAGACTTTTGTACTGTGC+TGG - chr7.4:2151189-2151208 MS.gene050558:intron 35.0%
! CCATAAAGTTTGTGGACTTT+TGG + chr7.4:2149839-2149858 None:intergenic 35.0%
! TAAAGTTTGTGGACTTTTGG+AGG + chr7.4:2149836-2149855 None:intergenic 35.0%
!! CTTGGCATGTTATTGCTTTT+GGG - chr7.4:2151238-2151257 MS.gene050558:intron 35.0%
!!! TGACATGTTAGTTTTGTTGC+TGG - chr7.4:2149756-2149775 MS.gene050558:intron 35.0%
AAATGATGTGCGCATCAACT+TGG - chr7.4:2150219-2150238 MS.gene050558:intron 40.0%
AACATAGTTGAGTCTGCAAG+TGG - chr7.4:2151528-2151547 MS.gene050558:CDS 40.0%
AATAGCAGGGACTAGATTGA+TGG - chr7.4:2148240-2148259 MS.gene050558:intron 40.0%
AATGTTGATCCAGCTCGAAA+AGG - chr7.4:2149053-2149072 MS.gene050558:intron 40.0%
ACCTGAGAGAGGTTGAAAAT+TGG + chr7.4:2147659-2147678 None:intergenic 40.0%
AGAGACCTTAAGGCTATGTT+TGG + chr7.4:2148846-2148865 None:intergenic 40.0%
AGAGACCTTAAGGTTATGTG+TGG + chr7.4:2148787-2148806 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr7.4:2150954-2150973 MS.gene050558:intron 40.0%
ATTACAGAGGCCCATAAACT+GGG + chr7.4:2150731-2150750 None:intergenic 40.0%
CAACTCACATGGTAGAAAGT+TGG - chr7.4:2148632-2148651 MS.gene050558:intron 40.0%
CCAAGTGGCTGATAATAGAA+TGG + chr7.4:2150144-2150163 None:intergenic 40.0%
CCACTAAAGTAAAACGGGAA+AGG + chr7.4:2150848-2150867 None:intergenic 40.0%
CCATTCTATTATCAGCCACT+TGG - chr7.4:2150141-2150160 MS.gene050558:intron 40.0%
CCTGAGAGAGGTTGAAAATT+GGG + chr7.4:2147658-2147677 None:intergenic 40.0%
GAGACCTTAAGGCTATGTTT+GGG + chr7.4:2148845-2148864 None:intergenic 40.0%
GAGAGGTTGAAAATTGGGAA+CGG + chr7.4:2147653-2147672 None:intergenic 40.0%
GCAAAGGCTAAAAACTGCAA+AGG + chr7.4:2150376-2150395 None:intergenic 40.0%
GGTTTCCCAAGAAAACATCA+TGG - chr7.4:2147746-2147765 MS.gene050558:intron 40.0%
GTGAAATATTGGGGGGATAT+AGG + chr7.4:2149597-2149616 None:intergenic 40.0%
GTGTGCAATTTCAAATGGAC+AGG + chr7.4:2149172-2149191 None:intergenic 40.0%
GTTATGTGTGGTAGTTGGTT+TGG + chr7.4:2148775-2148794 None:intergenic 40.0%
TAAGGATTGAAGTCACCGTT+AGG + chr7.4:2147838-2147857 None:intergenic 40.0%
TCACATGGTAGAAAGTTGGA+GGG - chr7.4:2148636-2148655 MS.gene050558:intron 40.0%
TCCCTTAAGTACAACTCACA+TGG - chr7.4:2148621-2148640 MS.gene050558:intron 40.0%
TGATGGCTCAGTTGAGTAAT+CGG - chr7.4:2149091-2149110 MS.gene050558:intron 40.0%
TGTTAGGGTGAAATATTGGG+GGG + chr7.4:2149604-2149623 None:intergenic 40.0%
! CCTTTCCCGTTTTACTTTAG+TGG - chr7.4:2150845-2150864 MS.gene050558:intron 40.0%
!! AAGTTTGTGGACTTTTGGAG+GGG + chr7.4:2149834-2149853 None:intergenic 40.0%
!! ACATACTAAGTGCTGAGAAG+TGG + chr7.4:2148708-2148727 None:intergenic 40.0%
!! CTGGGTTTGGTTCAATTTTC+AGG - chr7.4:2147725-2147744 MS.gene050558:intron 40.0%
!! TTTTGGAGGGGGAAATAACA+TGG + chr7.4:2149822-2149841 None:intergenic 40.0%
!!! GCGGCATTTTTTCGTTTCAA+TGG + chr7.4:2148740-2148759 None:intergenic 40.0%
ATAACAAACCTTGGTCCCCA+AGG + chr7.4:2149720-2149739 None:intergenic 45.0%
ATTTGTGACGTCATTGCTGC+TGG - chr7.4:2148366-2148385 MS.gene050558:intron 45.0%
CAATTATACCTTGGGGACCA+AGG - chr7.4:2149709-2149728 MS.gene050558:intron 45.0%
CACTGCTTTCTTACTGGGTT+TGG - chr7.4:2147712-2147731 MS.gene050558:intron 45.0%
CCTTAAGGCTATGTTTGGGA+AGG + chr7.4:2148841-2148860 None:intergenic 45.0%
CGGTGACTTCAATCCTTATG+AGG - chr7.4:2147840-2147859 MS.gene050558:intron 45.0%
CTCACATGGTAGAAAGTTGG+AGG - chr7.4:2148635-2148654 MS.gene050558:intron 45.0%
CTTGGTCCCCAAGGTATAAT+TGG + chr7.4:2149711-2149730 None:intergenic 45.0%
GAACTGAAATACTGGGACGT+AGG - chr7.4:2148665-2148684 MS.gene050558:intron 45.0%
GATTACAGAGGCCCATAAAC+TGG + chr7.4:2150732-2150751 None:intergenic 45.0%
GCTGAGAAGTGGATAATTGC+AGG + chr7.4:2148697-2148716 None:intergenic 45.0%
TGGGATTGTAGGACCAAACT+TGG - chr7.4:2151220-2151239 MS.gene050558:intron 45.0%
TTGTCTTTCTGCAGACAGCT+TGG - chr7.4:2150320-2150339 MS.gene050558:intron 45.0%
! AGGGTATGTTTGGGTTTGGA+GGG - chr7.4:2148461-2148480 MS.gene050558:intron 45.0%
! CCCAATTTTCAACCTCTCTC+AGG - chr7.4:2147655-2147674 MS.gene050558:intron 45.0%
! CCTTCCCAAACATAGCCTTA+AGG - chr7.4:2148838-2148857 MS.gene050558:intron 45.0%
! GGAGCTTTTCGGAGATTCAA+AGG + chr7.4:2150431-2150450 None:intergenic 45.0%
! TAGGGTATGTTTGGGTTTGG+AGG - chr7.4:2148460-2148479 MS.gene050558:intron 45.0%
! TGGTTTGGAGTCACTTGGTT+TGG + chr7.4:2148903-2148922 None:intergenic 45.0%
!! AGTCACTTGGTTTGGTCTAG+AGG + chr7.4:2148895-2148914 None:intergenic 45.0%
!! AGTTTGTGGACTTTTGGAGG+GGG + chr7.4:2149833-2149852 None:intergenic 45.0%
!! ATGTGTGGTAGTTGGTTTGG+AGG + chr7.4:2148772-2148791 None:intergenic 45.0%
!! CGGAAAAAGGGTGTGACTTT+TGG - chr7.4:2149111-2149130 MS.gene050558:intron 45.0%
!! GCAGGAAGCACTAATCCTAA+CGG - chr7.4:2147820-2147839 MS.gene050558:intron 45.0%
!! GTCACTTGGTTTGGTCTAGA+GGG + chr7.4:2148894-2148913 None:intergenic 45.0%
!! TCACTTGGTTTGGAGTCACT+TGG + chr7.4:2148908-2148927 None:intergenic 45.0%
!! TGTCATATGCCTTTTCGAGC+TGG + chr7.4:2149065-2149084 None:intergenic 45.0%
!! TGTGTGGTAGTTGGTTTGGA+GGG + chr7.4:2148771-2148790 None:intergenic 45.0%
!!! TTGATTTTATTTAATTATTT+TGG - chr7.4:2150278-2150297 MS.gene050558:intron 5.0%
CAGGAAGATGGTGAAGATCC+AGG - chr7.4:2150575-2150594 MS.gene050558:intron 50.0%
GAGTGAGTGTTACCTGAGAG+AGG + chr7.4:2147670-2147689 None:intergenic 50.0%
GATGGTGAAGATCCAGGAGA+AGG - chr7.4:2150581-2150600 MS.gene050558:intron 50.0%
GTATGGGAAAGAGACTGCTC+CGG - chr7.4:2150609-2150628 MS.gene050558:intron 50.0%
GTTTGGTCCTACAATCCCAG+TGG + chr7.4:2151219-2151238 None:intergenic 50.0%
TACTGTGCTGGACTTCCACT+GGG - chr7.4:2151201-2151220 MS.gene050558:intron 50.0%
TCTTCTTCTGCATCTGCTGC+AGG - chr7.4:2147802-2147821 MS.gene050558:intron 50.0%
TGGACTTCCACTGGGATTGT+AGG - chr7.4:2151209-2151228 MS.gene050558:intron 50.0%
!! GTGTGGTAGTTGGTTTGGAG+GGG + chr7.4:2148770-2148789 None:intergenic 50.0%
!! TGTGGTAGTTGGTTTGGAGG+GGG + chr7.4:2148769-2148788 None:intergenic 50.0%
CAAAAACCAAGGCCAGCGAC+CGG + chr7.4:2150631-2150650 None:intergenic 55.0%
CCAGGAGAAGGACTGCGTAT+GGG - chr7.4:2150593-2150612 MS.gene050558:intron 55.0%
GTACTGTGCTGGACTTCCAC+TGG - chr7.4:2151200-2151219 MS.gene050558:intron 55.0%
TCCAGGAGAAGGACTGCGTA+TGG - chr7.4:2150592-2150611 MS.gene050558:intron 55.0%
!! GTGGTAGTTGGTTTGGAGGG+GGG + chr7.4:2148768-2148787 None:intergenic 55.0%
!! TAGTTGGTTTGGAGGGGGGA+GGG + chr7.4:2148764-2148783 None:intergenic 55.0%
AAAGAGACTGCTCCGGTCGC+TGG - chr7.4:2150616-2150635 MS.gene050558:intron 60.0%
CCCATACGCAGTCCTTCTCC+TGG + chr7.4:2150596-2150615 None:intergenic 60.0%
!! GTAGTTGGTTTGGAGGGGGG+AGG + chr7.4:2148765-2148784 None:intergenic 60.0%
!!! CGGTCGCTGGCCTTGGTTTT+TGG - chr7.4:2150629-2150648 MS.gene050558:intron 60.0%
GGTTTGGAGGGGGGAGGGAG+CGG + chr7.4:2148759-2148778 None:intergenic 70.0%
! ACTGCTCCGGTCGCTGGCCT+TGG - chr7.4:2150622-2150641 MS.gene050558:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 2147573 2151587 2147573 ID=MS.gene050558
chr7.4 mRNA 2147573 2151587 2147573 ID=MS.gene050558.t1;Parent=MS.gene050558
chr7.4 exon 2151484 2151587 2151484 ID=MS.gene050558.t1.exon1;Parent=MS.gene050558.t1
chr7.4 CDS 2151484 2151587 2151484 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2151299 2151413 2151299 ID=MS.gene050558.t1.exon2;Parent=MS.gene050558.t1
chr7.4 CDS 2151299 2151413 2151299 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2151103 2151207 2151103 ID=MS.gene050558.t1.exon3;Parent=MS.gene050558.t1
chr7.4 CDS 2151103 2151207 2151103 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2150017 2150094 2150017 ID=MS.gene050558.t1.exon4;Parent=MS.gene050558.t1
chr7.4 CDS 2150017 2150094 2150017 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2149430 2149485 2149430 ID=MS.gene050558.t1.exon5;Parent=MS.gene050558.t1
chr7.4 CDS 2149430 2149485 2149430 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2148902 2148959 2148902 ID=MS.gene050558.t1.exon6;Parent=MS.gene050558.t1
chr7.4 CDS 2148902 2148959 2148902 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2148701 2148826 2148701 ID=MS.gene050558.t1.exon7;Parent=MS.gene050558.t1
chr7.4 CDS 2148701 2148826 2148701 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2148487 2148582 2148487 ID=MS.gene050558.t1.exon8;Parent=MS.gene050558.t1
chr7.4 CDS 2148487 2148582 2148487 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
chr7.4 exon 2147573 2147650 2147573 ID=MS.gene050558.t1.exon9;Parent=MS.gene050558.t1
chr7.4 CDS 2147573 2147650 2147573 ID=cds.MS.gene050558.t1;Parent=MS.gene050558.t1
Gene Sequence

>MS.gene050558

ATGGCTTTGACAATCTCAAACATACTTCACTTCCCTAAATTCAACAACAACAACAACACTAATTCATCCAACTATTTCCGTTCCCAATTTTCAACCTCTCTCAGGTAACACTCACTCACTCCTTCTTCTTCTAAAAAAACACTGCTTTCTTACTGGGTTTGGTTCAATTTTCAGGTTTCCCAAGAAAACATCATGGAATAACCCAATAATCATCTCTGCTTCTTCTTCTTCTTCTTCTGCATCTGCTGCAGGAAGCACTAATCCTAACGGTGACTTCAATCCTTATGAGGTAGCTACTCAATATTCATTATCTTATCATATCTAATTCAATTCCTTATTATTCTATCATATTACATTGTCTTATTATTATTGTTGTATAGATTTTAGGTGTAAGCCCTATTGAGAAATTTGACACGATCAAAGCAGCATATACTAAGAAAAAGAAGGAAGCTGAGATTAAGGGTGATGAACAAACTGCTTCCAGAGTATGTTAACTAACTAATTAACTCTTCTCTATTTTTCTGGCAAAAAAATTTTTGATTTTGGTAACTGCCAATGTTATTTTTTATTTTACAAACAAACTATCAATTTAATCCCTAAACCATATTGATAGTCAACTTACTCCCTTAAGTATATGAAAATCTGTCAATTTAGTCTCTAACATCTTAATAGCAGGGACTAGATTGATGGTTTATCATCATCATGTGAGAAGAGACAAAAACAAAATGAAAAAGGGTAGAATTACAAATTATTTTTCGCATCGATGAATATTATCATGTATTATTAAGATGCAATTTGTGACGTCATTGCTGCTGGTTTTTAAATTTTCTAATGGGAGAGATTGAATAATTGTGCTCATGTTCAGAAATGAAAAGTATGAGTATAAATAGGGTATGTTTGGGTTTGGAGGGCTAAGTCTATATCTTGATATATATGTGAGATGTTAAAAAAAATATTGAAGGAATGACATGAAAGATGATCATATAGTATTTCGTTCACCCTTTCAATCGATTTTAATTTCTTTAGTTTATAAATGAAAAATAATTTTTCCCTTAAGTACAACTCACATGGTAGAAAGTTGGAGGGACAATTGAACTGAAATACTGGGACGTAGGTTCGAACCTGCAATTATCCACTTCTCAGCACTTAGTATGTGAGTTTTCACCATTGAAACGAAAAAATGCCGCTCCCTCCCCCCTCCAAACCAACTACCACACATAACCTTAAGGTCTCTATTCTTTTCTTCTAAGGTCTCTAGTCTCATTCCTTCCCAAACATAGCCTTAAGGTCTCTAGTCTTTACACTTTTGAATTGCATACCCTCTAGACCAAACCAAGTGACTCCAAACCAAGTGACTTTCTACAAATTTGTCCCATAATGCTTTTAATTATTTCGTTTTTTATGAGGTTGCTAGTAATCCATATAGTTATATGTTTTTCTTAAATTTAATGTACTGACACATGGGATCTTGTGTATTGTGAATGTTGATCCAGCTCGAAAAGGCATATGACAAAGTTATGATGGCTCAGTTGAGTAATCGGAAAAAGGGTGTGACTTTTGGATCATTTAAGGTAAAGTAGGAGAGTCTTTCTTTTTCCTGTCCATTTGAAATTGCACACAAAACATGAAGACATGACGGCACATAGATACTTCTTAGTTTGTTTTGGAGATTGAAGCTTTGTTAATTTAGTTCTGTATGTATTTGATGTGTTATGCATTCATTGGACTTCCTTTGATGAAGCAGCAATAATTTTTACAAACATCTCTTAATTTTTTTTTTCAAGCTCAAAATGAATATAAGTTGCCTATCAATTTTGTATACGAAGAATTTGGGAGGAATTAATGTCTTATGATCTTGAATCCTTAACACTTTTCATTACAATGAAATAACTTCCAAGAATACGATTAATCATTATTCTCAGTCATAGAATTGTTATACACACAGTCTAGCTGCATAGCATTTTTTTGCCTTAAATAAATTAATTCCCCCACATCATCTATGCTATATTGTGTGCGCTCTTCCTATATCCCCCCAATATTTCACCCTAACATTTTGTTTATTTGCTTCTCAAAACTTTATATATTTTCTAAATTGAATGCAGGTTTCAAAGGACATAAAGTATGCTGACAAACAGCCAATTATACCTTGGGGACCAAGGTTTGTTATTGCTTGTCATAGTTCATGACATGTTAGTTTTGTTGCTGGATATTGTTCTATGTTTCTGCAGTGTGCTTGTGAATTGTCTCCATGTTATTTCCCCCTCCAAAAGTCCACAAACTTTATGGTTGAATTGTGTTAATTAGGATGTCTTTTATACTTGATGTGATCCAATTACTCTTTTATTACTGCTTAGAGAAGATCACAGTGTCTCTCCCTTATGAATTAAACATGCCATGAGTAATTTGTATTTAAATTGATTTATTTTCATCTACAGTTTGGTAGGAAAAACTCTTCTTCTTTTTTTTTTTCTGCGTGTATGTATATCTGACATTCCTTTCCACTGTCAAATTTCATCATGTTCTACATTTTCTTCTAGTTAAAATTTTTCTCGATATCACTAAGCAGTGCCATTCTATTATCAGCCACTTGGATTTTTTGACATTATTTGTACTTCGATGCAATTTCAGGTTTGCTAAATCAAGTGAAAATGATGTGCGCATCAACTTGGCAATATCTGCTGTTTTTGTGAGTAGTAAATGAACGGTTGATTTTATTTAATTATTTTGGAATATACTAATGCTCAGAATTGTCTTTCTGCAGACAGCTTGGATCGCAGTAACTCAAAGTGCTGAATATAAACCTTTGCAGTTTTTAGCCTTTGCTTTCGTTTATAGGCTTTTTGAGAAGTTAAAATCCTTTGAATCTCCGAAAAGCTCCACAATTAATGTGAGTTTCATATTCTATGACGGCCTATTCAATACAATCTTAGAATTTTCCATTTTTAACCATGTTGAATTATCAATAGAATTGTATAGTTCATGAATCATGATAATGTTGGATACAGGAAGATGGTGAAGATCCAGGAGAAGGACTGCGTATGGGAAAGAGACTGCTCCGGTCGCTGGCCTTGGTTTTTGGATGTATAGCTGTTTCATCCTTGGTATGATGATTCATCTGATCTTTTGGTGTGATTCAAGTATCACTTCTCTGATATCCCAGTTTATGGGCCTCTGTAATCTACAATAATTAACAAGGAAGCTGATATAATGTGTGTATGTGTGTGTGATTGTCTTTTTAAAGAAAAAGATGGATCGCTTCGACATTTCATCTTCCTTTCCCGTTTTACTTTAGTGGAAGAGTAATGATATTTTGACATCCATTTAATGACAGCTTTGTTGACAACCTTGTTTTTCTCCCTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCATAAAGTGGTTGTCAAAATATCATTTCTCTGGGTGGAAACCAAATTATTTTTCATCATGACATTCTGAAAAGATGCATTTGCATAATTTTCATTTAATCTTTGTTGGAGCTATTATTTGAAGACAAATTTTAAAGAAGAAATTTGTGGCGGCTGATTTACAGAAATTAGACTTTTGTACTGTGCTGGACTTCCACTGGGATTGTAGGACCAAACTTGGCATGTTATTGCTTTTGGGAGAGATTGTACTTCATACATATACATCATCAGATTAATGATGCACAAACGAATTTATATTATGCATTTTTAGTTTTTAGTTGAAAATATATTTTCAGTATGCTATTCAGTTATTTTGTTTGTCTCTCTGTATTCATTGCAGTCAAATACGCCTGAAGTTTTCTATTTTCTTATCATACATACTATTGTTCTTCAAAATTATTTAATGTTCCAGATAAAGATTAATAGTTTCTGGTACATTTTTTTGCAGGCTTACACTTTCGCTTTGAACATAGTTGAGTCTGCAAGTGGTTATATCCCATCTCTTCTTTACAACAGTCAGGTATAA

Protein sequence

>MS.gene050558.t1

MALTISNILHFPKFNNNNNTNSSNYFRSQFSTSLRFPKKTSWNNPIIISASSSSSSASAAGSTNPNGDFNPYEILGVSPIEKFDTIKAAYTKKKKEAEIKGDEQTASRLEKAYDKVMMAQLSNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFAKSSENDVRINLAISAVFTAWIAVTQSAEYKPLQFLAFAFVYRLFEKLKSFESPKSSTINEDGEDPGEGLRMGKRLLRSLALVFGCIAVSSLAYTFALNIVESASGYIPSLLYNSQV