AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91248

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91248.t1 MTR_2g084280 97.436 312 6 2 3 314 4 313 0.0 618
MS.gene91248.t1 MTR_4g057270 64.526 327 93 10 2 314 16 333 4.78e-131 376
MS.gene91248.t1 MTR_8g064700 34.591 159 83 3 126 270 236 387 2.94e-20 90.9
MS.gene91248.t1 MTR_1g112680 29.362 235 128 7 63 259 239 473 2.16e-19 89.0
MS.gene91248.t1 MTR_3g104100 32.292 192 109 4 133 310 194 378 1.55e-18 85.5
MS.gene91248.t1 MTR_3g498695 30.645 186 108 4 89 259 257 436 2.92e-17 82.4
MS.gene91248.t1 MTR_3g498695 30.645 186 108 4 89 259 257 436 3.09e-17 82.4
MS.gene91248.t1 MTR_3g030700 29.744 195 116 4 123 303 185 372 1.16e-16 80.1
MS.gene91248.t1 MTR_2g038040 26.203 187 117 3 133 301 51 234 2.22e-16 77.4
MS.gene91248.t1 MTR_2g081040 31.351 185 111 6 133 303 176 358 2.84e-15 75.9
MS.gene91248.t1 MTR_8g067280 30.864 162 93 5 138 283 466 624 9.49e-15 75.1
MS.gene91248.t1 MTR_4g091910 31.548 168 108 4 122 288 37 198 1.55e-14 71.6
MS.gene91248.t1 MTR_8g027495 29.605 152 97 4 138 287 462 605 2.19e-14 73.9
MS.gene91248.t1 MTR_4g097950 30.058 173 94 4 98 258 47 204 4.27e-14 71.2
MS.gene91248.t1 MTR_5g030430 30.488 164 91 5 138 283 497 655 5.30e-14 72.8
MS.gene91248.t1 MTR_7g083900 28.859 149 90 2 133 266 285 432 1.23e-13 71.6
MS.gene91248.t1 MTR_7g083900 28.859 149 90 2 133 266 285 432 1.34e-13 71.2
MS.gene91248.t1 MTR_7g117670 30.464 151 97 4 138 287 406 549 1.51e-13 71.6
MS.gene91248.t1 MTR_4g092700 26.404 178 124 5 97 270 122 296 6.23e-12 65.9
MS.gene91248.t1 MTR_8g024770 33.708 89 54 1 138 221 283 371 1.17e-11 65.5
MS.gene91248.t1 MTR_8g024790 28.421 190 98 9 113 276 259 436 2.56e-11 64.3
MS.gene91248.t1 MTR_1g019240 32.143 112 64 3 79 186 44 147 2.64e-11 63.5
MS.gene91248.t1 MTR_7g096350 48.077 52 27 0 138 189 359 410 3.37e-11 64.3
MS.gene91248.t1 MTR_4g091990 32.407 108 69 1 133 240 44 147 8.97e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91248.t1 AT2G28160 52.252 333 120 10 1 314 5 317 7.22e-104 306
MS.gene91248.t1 AT2G28160 51.682 327 119 10 1 308 5 311 9.32e-100 296
MS.gene91248.t1 AT4G29930 34.682 173 108 3 133 305 53 220 2.96e-24 99.0
MS.gene91248.t1 AT4G29930 34.682 173 105 4 133 305 53 217 3.95e-23 95.9
MS.gene91248.t1 AT5G57150 33.333 192 107 6 122 297 40 226 9.15e-23 95.1
MS.gene91248.t1 AT4G29930 35.099 151 92 3 133 283 53 197 2.92e-22 93.6
MS.gene91248.t1 AT5G57150 34.078 179 99 5 122 284 41 216 3.13e-22 93.2
MS.gene91248.t1 AT5G57150 35.758 165 87 5 122 270 40 201 3.88e-22 92.8
MS.gene91248.t1 AT5G57150 35.758 165 87 5 122 270 41 202 5.21e-22 92.4
MS.gene91248.t1 AT5G57150 35.758 165 87 5 122 270 41 202 1.56e-21 92.4
MS.gene91248.t1 AT2G16910 36.025 161 77 4 132 267 312 471 3.44e-21 94.4
MS.gene91248.t1 AT4G29930 31.156 199 106 5 133 305 53 246 4.72e-20 87.8
MS.gene91248.t1 AT4G29930 31.073 177 93 4 133 283 53 226 5.46e-19 85.1
MS.gene91248.t1 AT4G29930 31.073 177 93 4 133 283 53 226 5.46e-19 85.1
MS.gene91248.t1 AT2G46510 30.726 179 99 6 119 288 372 534 1.12e-17 84.0
MS.gene91248.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.45e-16 80.5
MS.gene91248.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.45e-16 80.5
MS.gene91248.t1 AT1G01260 33.155 187 103 4 95 281 396 560 1.45e-16 80.5
MS.gene91248.t1 AT4G29930 47.143 70 37 0 133 202 53 122 1.54e-15 73.9
MS.gene91248.t1 AT4G17880 28.188 149 103 3 138 283 420 567 2.18e-14 73.9
MS.gene91248.t1 AT1G12860 29.932 147 85 4 133 266 266 407 1.69e-13 70.9
MS.gene91248.t1 AT1G12860 29.932 147 85 4 133 266 266 407 2.04e-13 70.9
MS.gene91248.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.93e-13 70.5
MS.gene91248.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.93e-13 70.5
MS.gene91248.t1 AT3G26744 30.612 147 88 3 133 266 306 451 2.93e-13 70.5
MS.gene91248.t1 AT3G26744 31.293 147 87 4 133 266 306 451 2.98e-13 70.5
MS.gene91248.t1 AT1G32640 30.000 150 100 4 138 283 456 604 2.75e-12 67.8
MS.gene91248.t1 AT5G46760 29.091 165 85 6 138 283 419 570 7.88e-12 66.2
MS.gene91248.t1 AT2G22750 26.582 158 105 3 127 275 119 274 2.60e-11 63.9
MS.gene91248.t1 AT2G22750 26.582 158 105 3 127 275 147 302 2.66e-11 63.9
MS.gene91248.t1 AT2G22750 26.582 158 105 3 127 275 143 298 2.77e-11 63.9
MS.gene91248.t1 AT2G22750 26.582 158 105 3 127 275 147 302 3.08e-11 63.9
MS.gene91248.t1 AT2G22750 26.582 158 105 3 127 275 119 274 3.12e-11 63.5
MS.gene91248.t1 AT1G10610 45.161 62 34 0 132 193 165 226 6.79e-11 62.8
MS.gene91248.t1 AT4G37850 25.909 220 123 9 61 258 80 281 7.44e-11 62.8
MS.gene91248.t1 AT4G37850 25.909 220 123 9 61 258 80 281 7.44e-11 62.8
MS.gene91248.t1 AT1G10610 45.161 62 34 0 132 193 232 293 8.62e-11 62.8

Find 59 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTGAATGCTGAGGTTTC+TGG 0.189821 2.3:-13818551 MS.gene91248:CDS
TGTTATGATGGAGAGGTTAA+AGG 0.231584 2.3:-13818977 MS.gene91248:CDS
TATTGTTGTGATCAAATAAT+AGG 0.246719 2.3:+13819068 None:intergenic
GCTTTATGCATTGCGTTCTT+TGG 0.304101 2.3:-13818807 MS.gene91248:CDS
TCGATAAATTGATCAAAGTT+TGG 0.327610 2.3:+13819199 None:intergenic
GTCATGCAGCTCAAAGTTAT+TGG 0.328211 2.3:+13819234 None:intergenic
CTAATTACCTTTGTAATGTT+GGG 0.360034 2.3:+13818782 None:intergenic
ACTAATTACCTTTGTAATGT+TGG 0.365158 2.3:+13818781 None:intergenic
ACTTCCTAGCTTGTGCTTGA+AGG 0.382012 2.3:+13818570 None:intergenic
ACCTTCAAAATTTGAAGCTA+TGG 0.386796 2.3:-13817794 MS.gene91248:CDS
GGCTCCTTCTCTTGTTATGA+TGG 0.389333 2.3:-13818989 MS.gene91248:CDS
GAGCCAATTGTTGTAGGGCT+TGG 0.390918 2.3:+13819007 None:intergenic
CAATGTTCAAAATTCAAACT+TGG 0.395586 2.3:-13817987 MS.gene91248:CDS
TTGTGATCAAATAATAGGTT+TGG 0.409993 2.3:+13819073 None:intergenic
TTGGAGGAATTGAAAGAAGT+TGG 0.410526 2.3:+13819092 None:intergenic
CAATTTATCGATTTAATTCG+AGG 0.430612 2.3:-13819187 MS.gene91248:CDS
AATCCAAGCCCTACAACAAT+TGG 0.433423 2.3:-13819010 MS.gene91248:CDS
GAGGAGGAGAGGCAGGATGA+AGG 0.445153 2.3:-13818834 MS.gene91248:CDS
ATGGATAAGGCCTCTATAAT+CGG 0.446167 2.3:-13818617 MS.gene91248:CDS
CTGAGAGGAGGAGGAGAGGC+AGG 0.453081 2.3:-13818841 MS.gene91248:CDS
GAGAAGGAGCCAATTGTTGT+AGG 0.453789 2.3:+13819001 None:intergenic
GAAGATGCAATATCTAACTT+TGG 0.471684 2.3:-13819157 MS.gene91248:CDS
CCTTCAAAATTTGAAGCTAT+GGG 0.474141 2.3:-13817793 MS.gene91248:CDS
CCTCTCAGAAATGAGAGTCT+TGG 0.475407 2.3:+13818856 None:intergenic
CTCTCATTTCTGAGAGGAGG+AGG 0.478718 2.3:-13818850 MS.gene91248:CDS
AATTTGCAAGAAAATTATCC+AGG 0.484959 2.3:-13818453 MS.gene91248:intron
TCAGTGTCTGAAAATTATCA+AGG 0.485823 2.3:-13818512 MS.gene91248:CDS
GATGGAGAGGTTAAAGGAGA+AGG 0.491246 2.3:-13818971 MS.gene91248:CDS
CAATGAAGCAATCATTGATA+AGG 0.492027 2.3:+13819128 None:intergenic
TGATCAAATAATAGGTTTGG+AGG 0.499808 2.3:+13819076 None:intergenic
CTTCTCTTGTTATGATGGAG+AGG 0.500496 2.3:-13818984 MS.gene91248:CDS
ATGGCATGAATTCAAAGCCT+TGG 0.500719 2.3:+13817751 None:intergenic
CATGCAGTGGCTCAAAATGA+TGG 0.501968 2.3:+13817732 None:intergenic
AATAACCTCTTTCCTCCACT+TGG 0.518798 2.3:+13818086 None:intergenic
TATCCACGTACAGATGGATA+AGG 0.530307 2.3:-13818630 MS.gene91248:intron
TACTGCATCTCCGATTATAG+AGG 0.533319 2.3:+13818607 None:intergenic
AGAAGGAGCCAATTGTTGTA+GGG 0.535853 2.3:+13819002 None:intergenic
AAAGGAGAAGGAGAAAATGA+TGG 0.542463 2.3:-13818959 MS.gene91248:CDS
GAAGGAGAAAATGATGGAGG+TGG 0.543991 2.3:-13818953 MS.gene91248:CDS
CTCTCCATCATAACAAGAGA+AGG 0.545524 2.3:+13818985 None:intergenic
CAATCGATGATGCTAACCCT+AGG 0.549718 2.3:-13818895 MS.gene91248:CDS
ACCCTAGGGCTAAAACTGAT+AGG 0.553134 2.3:-13818880 MS.gene91248:CDS
AATTTGAAGCTATGGGTGGC+TGG 0.562736 2.3:-13817786 MS.gene91248:CDS
GGTGTTCTCTAGTGAGTCCA+TGG 0.563816 2.3:+13819255 None:intergenic
ATGACCTTCAAGCACAAGCT+AGG 0.564350 2.3:-13818574 MS.gene91248:CDS
ATTTCTGAGAGGAGGAGGAG+AGG 0.573269 2.3:-13818845 MS.gene91248:CDS
AGTAGCTGCTTCATTGTACA+AGG 0.575970 2.3:-13818032 MS.gene91248:CDS
ATGTTCCAAGTGGAGGAAAG+AGG 0.591850 2.3:-13818091 MS.gene91248:CDS
TTTGGTTCCCAACATTACAA+AGG 0.593392 2.3:-13818789 MS.gene91248:intron
AGACTCTCATTTCTGAGAGG+AGG 0.604951 2.3:-13818853 MS.gene91248:CDS
GGAGAAGGAGAAAATGATGG+AGG 0.607003 2.3:-13818956 MS.gene91248:CDS
AGCTAGGAAGTTGAATGCTG+AGG 0.609235 2.3:-13818558 MS.gene91248:CDS
TCAAAATTTGAAGCTATGGG+TGG 0.609799 2.3:-13817790 MS.gene91248:CDS
ATATTGTGCAATAAAGGAGA+AGG 0.612090 2.3:-13818055 MS.gene91248:CDS
AGGGTTAGCATCATCGATTG+TGG 0.612799 2.3:+13818898 None:intergenic
GGTGGACATGTTCCAAGTGG+AGG 0.635415 2.3:-13818098 MS.gene91248:CDS
AATCGATGATGCTAACCCTA+GGG 0.641884 2.3:-13818894 MS.gene91248:CDS
CCAAGACTCTCATTTCTGAG+AGG 0.669057 2.3:-13818856 MS.gene91248:CDS
GTAGGTGGACATGTTCCAAG+TGG 0.684360 2.3:-13818101 MS.gene91248:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGCTTAATATTAATTTG+AGG - chr2.3:13818305-13818324 MS.gene91248:intron 15.0%
!!! CAAAGATATAATTTTTGTTA+GGG - chr2.3:13818257-13818276 MS.gene91248:intron 15.0%
!! AATGAAAAATTAATCAAACC+TGG + chr2.3:13818564-13818583 None:intergenic 20.0%
!! AGCATTAATCAATGAATTAA+TGG + chr2.3:13819097-13819116 None:intergenic 20.0%
!! ATTGTTGTGTTGAAAAATAT+AGG - chr2.3:13819155-13819174 MS.gene91248:CDS 20.0%
!! TATTGTTGTGATCAAATAAT+AGG + chr2.3:13817931-13817950 None:intergenic 20.0%
!! TGTTGAAAAATATAGGTAAA+CGG - chr2.3:13819162-13819181 MS.gene91248:CDS 20.0%
!!! AATTCATTGATTAATGCTTA+GGG - chr2.3:13819099-13819118 MS.gene91248:CDS 20.0%
!!! GCAAAGATATAATTTTTGTT+AGG - chr2.3:13818256-13818275 MS.gene91248:intron 20.0%
!!! TAATTCATTGATTAATGCTT+AGG - chr2.3:13819098-13819117 MS.gene91248:CDS 20.0%
! AAGATAGAAAACTACAAACA+AGG - chr2.3:13818763-13818782 MS.gene91248:intron 25.0%
! AATCAATGAATTAATGGAAG+AGG + chr2.3:13819091-13819110 None:intergenic 25.0%
! AATTTGCAAGAAAATTATCC+AGG - chr2.3:13818543-13818562 MS.gene91248:CDS 25.0%
! ACTAATTACCTTTGTAATGT+TGG + chr2.3:13818218-13818237 None:intergenic 25.0%
! AGACTCATGAAATTATAACT+TGG + chr2.3:13818614-13818633 None:intergenic 25.0%
! AGATAGAAAACTACAAACAA+GGG - chr2.3:13818764-13818783 MS.gene91248:intron 25.0%
! ATCAATGAATTAATGGAAGA+GGG + chr2.3:13819090-13819109 None:intergenic 25.0%
! CAATGTTCAAAATTCAAACT+TGG - chr2.3:13819009-13819028 MS.gene91248:CDS 25.0%
! CTAATTACCTTTGTAATGTT+GGG + chr2.3:13818217-13818236 None:intergenic 25.0%
! GCAAAAATATTGTGCAATAA+AGG - chr2.3:13818935-13818954 MS.gene91248:CDS 25.0%
! TCGATAAATTGATCAAAGTT+TGG + chr2.3:13817800-13817819 None:intergenic 25.0%
! TCTTTGCAACTAATTGAAAA+AGG + chr2.3:13818243-13818262 None:intergenic 25.0%
! TGCTGTTAAAGAAAAAATGT+TGG + chr2.3:13818697-13818716 None:intergenic 25.0%
! TTAGACAAACACTTTATAGT+TGG - chr2.3:13818820-13818839 MS.gene91248:CDS 25.0%
! TTGTGATCAAATAATAGGTT+TGG + chr2.3:13817926-13817945 None:intergenic 25.0%
!! AAAAATGTTGGTCTAAGATA+AGG + chr2.3:13818685-13818704 None:intergenic 25.0%
!! TAATTTTCTTGCAAATTGGA+TGG + chr2.3:13818540-13818559 None:intergenic 25.0%
!! TGGATAATTTTCTTGCAAAT+TGG + chr2.3:13818544-13818563 None:intergenic 25.0%
!!! AAATTTTGAAGGTTCATTTC+TGG + chr2.3:13819195-13819214 None:intergenic 25.0%
!!! CAATTTATCGATTTAATTCG+AGG - chr2.3:13817809-13817828 MS.gene91248:CDS 25.0%
ATATTGTGCAATAAAGGAGA+AGG - chr2.3:13818941-13818960 MS.gene91248:CDS 30.0%
CAATGAAGCAATCATTGATA+AGG + chr2.3:13817871-13817890 None:intergenic 30.0%
GAAGATGCAATATCTAACTT+TGG - chr2.3:13817839-13817858 MS.gene91248:intron 30.0%
GATAGAAAACTACAAACAAG+GGG - chr2.3:13818765-13818784 MS.gene91248:intron 30.0%
GTTATTGATGTCTTTGCTTA+AGG - chr2.3:13819121-13819140 MS.gene91248:CDS 30.0%
TCAGTGTCTGAAAATTATCA+AGG - chr2.3:13818484-13818503 MS.gene91248:CDS 30.0%
TGATCAAATAATAGGTTTGG+AGG + chr2.3:13817923-13817942 None:intergenic 30.0%
TGTTGTGCATTATGATATGT+AGG - chr2.3:13818877-13818896 MS.gene91248:CDS 30.0%
TTTATATATCCACGTACAGA+TGG - chr2.3:13818360-13818379 MS.gene91248:intron 30.0%
! ACCTTCAAAATTTGAAGCTA+TGG - chr2.3:13819202-13819221 MS.gene91248:CDS 30.0%
! CCTTCAAAATTTGAAGCTAT+GGG - chr2.3:13819203-13819222 MS.gene91248:CDS 30.0%
AAAGGAGAAGGAGAAAATGA+TGG - chr2.3:13818037-13818056 MS.gene91248:CDS 35.0%
ATGGATAAGGCCTCTATAAT+CGG - chr2.3:13818379-13818398 MS.gene91248:intron 35.0%
TGTGCATTATGATATGTAGG+TGG - chr2.3:13818880-13818899 MS.gene91248:CDS 35.0%
TTGGAGGAATTGAAAGAAGT+TGG + chr2.3:13817907-13817926 None:intergenic 35.0%
! CCCATAGCTTCAAATTTTGA+AGG + chr2.3:13819206-13819225 None:intergenic 35.0%
! TCAAAATTTGAAGCTATGGG+TGG - chr2.3:13819206-13819225 MS.gene91248:CDS 35.0%
! TGTTATGATGGAGAGGTTAA+AGG - chr2.3:13818019-13818038 MS.gene91248:CDS 35.0%
! TTTGGTTCCCAACATTACAA+AGG - chr2.3:13818207-13818226 MS.gene91248:intron 35.0%
AAGTTGAATGCTGAGGTTTC+TGG - chr2.3:13818445-13818464 MS.gene91248:intron 40.0%
AATAACCTCTTTCCTCCACT+TGG + chr2.3:13818913-13818932 None:intergenic 40.0%
AATCCAAGCCCTACAACAAT+TGG - chr2.3:13817986-13818005 MS.gene91248:CDS 40.0%
AATCGATGATGCTAACCCTA+GGG - chr2.3:13818102-13818121 MS.gene91248:intron 40.0%
AGAAGGAGCCAATTGTTGTA+GGG + chr2.3:13817997-13818016 None:intergenic 40.0%
AGTAGCTGCTTCATTGTACA+AGG - chr2.3:13818964-13818983 MS.gene91248:CDS 40.0%
ATGGCATGAATTCAAAGCCT+TGG + chr2.3:13819248-13819267 None:intergenic 40.0%
CTCTCCATCATAACAAGAGA+AGG + chr2.3:13818014-13818033 None:intergenic 40.0%
GCTTTATGCATTGCGTTCTT+TGG - chr2.3:13818189-13818208 MS.gene91248:intron 40.0%
GTCATGCAGCTCAAAGTTAT+TGG + chr2.3:13817765-13817784 None:intergenic 40.0%
TACTGCATCTCCGATTATAG+AGG + chr2.3:13818392-13818411 None:intergenic 40.0%
TATCCACGTACAGATGGATA+AGG - chr2.3:13818366-13818385 MS.gene91248:intron 40.0%
! CTTCTCTTGTTATGATGGAG+AGG - chr2.3:13818012-13818031 MS.gene91248:CDS 40.0%
!! AAACAAGGGGCATCAGATAT+AGG - chr2.3:13818778-13818797 MS.gene91248:intron 40.0%
!! ACCTATCAGTTTTAGCCCTA+GGG + chr2.3:13818120-13818139 None:intergenic 40.0%
ACCCTAGGGCTAAAACTGAT+AGG - chr2.3:13818116-13818135 MS.gene91248:intron 45.0%
AGCTAGGAAGTTGAATGCTG+AGG - chr2.3:13818438-13818457 MS.gene91248:intron 45.0%
ATGACCTTCAAGCACAAGCT+AGG - chr2.3:13818422-13818441 MS.gene91248:intron 45.0%
ATGTTCCAAGTGGAGGAAAG+AGG - chr2.3:13818905-13818924 MS.gene91248:CDS 45.0%
CAATCGATGATGCTAACCCT+AGG - chr2.3:13818101-13818120 MS.gene91248:intron 45.0%
CCAAGACTCTCATTTCTGAG+AGG - chr2.3:13818140-13818159 MS.gene91248:intron 45.0%
CCTCTCAGAAATGAGAGTCT+TGG + chr2.3:13818143-13818162 None:intergenic 45.0%
GAGAAGGAGCCAATTGTTGT+AGG + chr2.3:13817998-13818017 None:intergenic 45.0%
GATGGAGAGGTTAAAGGAGA+AGG - chr2.3:13818025-13818044 MS.gene91248:CDS 45.0%
GGAGAAGGAGAAAATGATGG+AGG - chr2.3:13818040-13818059 MS.gene91248:CDS 45.0%
TGTTCGTCTTGTGCATAGAC+TGG + chr2.3:13818734-13818753 None:intergenic 45.0%
! AATTTGAAGCTATGGGTGGC+TGG - chr2.3:13819210-13819229 MS.gene91248:CDS 45.0%
! ACTTCCTAGCTTGTGCTTGA+AGG + chr2.3:13818429-13818448 None:intergenic 45.0%
! AGACTCTCATTTCTGAGAGG+AGG - chr2.3:13818143-13818162 MS.gene91248:intron 45.0%
! AGGGTTAGCATCATCGATTG+TGG + chr2.3:13818101-13818120 None:intergenic 45.0%
! GAAGGAGAAAATGATGGAGG+TGG - chr2.3:13818043-13818062 MS.gene91248:CDS 45.0%
! GGCTCCTTCTCTTGTTATGA+TGG - chr2.3:13818007-13818026 MS.gene91248:CDS 45.0%
!! GACCTATCAGTTTTAGCCCT+AGG + chr2.3:13818121-13818140 None:intergenic 45.0%
GAGCCAATTGTTGTAGGGCT+TGG + chr2.3:13817992-13818011 None:intergenic 50.0%
GTAGGTGGACATGTTCCAAG+TGG - chr2.3:13818895-13818914 MS.gene91248:CDS 50.0%
! AGGCCTTATCCATCTGTACG+TGG + chr2.3:13818372-13818391 None:intergenic 50.0%
! ATTTCTGAGAGGAGGAGGAG+AGG - chr2.3:13818151-13818170 MS.gene91248:intron 50.0%
! CTCTCATTTCTGAGAGGAGG+AGG - chr2.3:13818146-13818165 MS.gene91248:intron 50.0%
! GCTGGTGCTCTTTTGAACCA+AGG - chr2.3:13819228-13819247 MS.gene91248:CDS 50.0%
GGTGGACATGTTCCAAGTGG+AGG - chr2.3:13818898-13818917 MS.gene91248:CDS 55.0%
GAGGAGGAGAGGCAGGATGA+AGG - chr2.3:13818162-13818181 MS.gene91248:intron 60.0%
CTGAGAGGAGGAGGAGAGGC+AGG - chr2.3:13818155-13818174 MS.gene91248:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 13817743 13819275 13817743 ID=MS.gene91248
chr2.3 mRNA 13817743 13819275 13817743 ID=MS.gene91248.t1;Parent=MS.gene91248
chr2.3 exon 13818790 13819275 13818790 ID=MS.gene91248.t1.exon1;Parent=MS.gene91248.t1
chr2.3 CDS 13818790 13819275 13818790 ID=cds.MS.gene91248.t1;Parent=MS.gene91248.t1
chr2.3 exon 13818454 13818639 13818454 ID=MS.gene91248.t1.exon2;Parent=MS.gene91248.t1
chr2.3 CDS 13818454 13818639 13818454 ID=cds.MS.gene91248.t1;Parent=MS.gene91248.t1
chr2.3 exon 13817946 13818119 13817946 ID=MS.gene91248.t1.exon3;Parent=MS.gene91248.t1
chr2.3 CDS 13817946 13818119 13817946 ID=cds.MS.gene91248.t1;Parent=MS.gene91248.t1
chr2.3 exon 13817743 13817841 13817743 ID=MS.gene91248.t1.exon4;Parent=MS.gene91248.t1
chr2.3 CDS 13817743 13817841 13817743 ID=cds.MS.gene91248.t1;Parent=MS.gene91248.t1
Gene Sequence

>MS.gene91248

ATGGACTCACTAGAGAACACCAATAACTTTGAGCTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGCATGAAGATGCAATATCTAACTTTGGCTCTGACCTTATCAATGATTGCTTCATTGATAATAATATTAACCAACTTCTTTCAATTCCTCCAAACCTATTATTTGATCACAACAATAACAATATTATTAATAATAATGTTGTCAATGAGTATAATCCAAGCCCTACAACAATTGGCTCCTTCTCTTGTTATGATGGAGAGGTTAAAGGAGAAGGAGAAAATGATGGAGGTGGTTCTTCTGCAACAACGACGACGACGACGACAACCACAATCGATGATGCTAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCAGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGGTAATTAGTGTCCTTTTTCAATTAGTTGCAAAGATATAATTTTTGTTAGGGTTGCTACTTTCAAGTTTTCAATATGATATGCTTAATATTAATTTGAGGATGAAAAATGTAATGTAATATATATACTTATATTTATATATCCACGTACAGATGGATAAGGCCTCTATAATCGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAATGCTGAGGTTTCTGGACTTGAAGCATCTTTATCAGTGTCTGAAAATTATCAAGGATCAATTAGTAACACTATTAATGTTCAAAGCCATCCAATTTGCAAGAAAATTATCCAGGTTTGATTAATTTTTCATTTCACATTCTAGTATTTTTTTTTTAGATCCAAGTTATAATTTCATGAGTCTATGATGAACAAGTATTTTTTTTTTCTTTTACAAGACTCAGACTCTAAACCTTATCTTAGACCAACATTTTTTCTTTAACAGCAAAATTTATTAACAACCAGTCTATGCACAAGACGAACAGAGATCAGTAAGATAGAAAACTACAAACAAGGGGCATCAGATATAGGCAGAACAAAGTCATACGTCTTAGACAAACACTTTATAGTTGGTTTTTCAATGTATCGTACACAATTTTAATAGTTGTGTTGTGCATTATGATATGTAGGTGGACATGTTCCAAGTGGAGGAAAGAGGTTATTATGCAAAAATATTGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTTCAAAATTCAAACTTGGCTACAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAGTTATTATTACCCTCTTCCATTAATTCATTGATTAATGCTTAGGGTTATTGATGTCTTTGCTTAAGGATTAATTAGTCATTGTTGTGTTGAAAAATATAGGTAAACGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA
Protein sequence

>MS.gene91248.t1

MDSLENTNNFELHDFIDDPNFDQFIDLIRGEHEDAISNFGSDLINDCFIDNNINQLLSIPPNLLFDHNNNNIINNNVVNEYNPSPTTIGSFSCYDGEVKGEGENDGGGSSATTTTTTTTTIDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLNAEVSGLEASLSVSENYQGSISNTINVQSHPICKKIIQVDMFQVEERGYYAKILCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF