Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060561.t1 | XP_003609194.1 | 97.9 | 290 | 6 | 0 | 1 | 290 | 1 | 290 | 5.70E-154 | 553.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060561.t1 | Q0WP96 | 66.0 | 285 | 97 | 0 | 6 | 290 | 4 | 288 | 5.5e-105 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060561.t1 | G7JU49 | 97.9 | 290 | 6 | 0 | 1 | 290 | 1 | 290 | 4.1e-154 | 553.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052383 | MS.gene060561 | 0.811712 | 6.10E-51 | -1.69E-46 |
| MS.gene052700 | MS.gene060561 | 0.813679 | 2.27E-51 | -1.69E-46 |
| MS.gene059701 | MS.gene060561 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene060561 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene060561 | MS.gene061777 | 0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene065196 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene060561 | MS.gene23421 | 0.811196 | 7.90E-51 | -1.69E-46 |
| MS.gene060561 | MS.gene26906 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene060561 | MS.gene27942 | 0.809639 | 1.71E-50 | -1.69E-46 |
| MS.gene060561 | MS.gene27943 | 0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene060561 | MS.gene38761 | 0.800424 | 1.45E-48 | -1.69E-46 |
| MS.gene060561 | MS.gene47901 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene060561 | MS.gene47902 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene57291 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene67222 | 0.815879 | 7.37E-52 | -1.69E-46 |
| MS.gene060561 | MS.gene70340 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene83358 | 0.80784 | 4.15E-50 | -1.69E-46 |
| MS.gene060561 | MS.gene88260 | 0.831647 | 1.48E-55 | -1.69E-46 |
| MS.gene060561 | MS.gene91248 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene060561 | MS.gene93272 | 0.814405 | 1.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060561.t1 | MTR_4g112990 | 97.931 | 290 | 6 | 0 | 1 | 290 | 1 | 290 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060561.t1 | AT5G19930 | 65.965 | 285 | 97 | 0 | 6 | 290 | 4 | 288 | 1.44e-132 | 377 |
| MS.gene060561.t1 | AT5G19930 | 65.965 | 285 | 97 | 0 | 6 | 290 | 4 | 288 | 1.44e-132 | 377 |
Find 59 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTGATTGTAGCTTTA+TGG | 0.071257 | 8.4:+15790812 | MS.gene060561:CDS |
| TGTTCTGATTGTAGCTTTAT+GGG | 0.234865 | 8.4:+15790813 | MS.gene060561:CDS |
| GCTCTCATTGGTGGTGTTAT+TGG | 0.255394 | 8.4:+15790892 | MS.gene060561:CDS |
| TGTCCACCTTGTTTGAATTC+AGG | 0.279090 | 8.4:-15789969 | None:intergenic |
| AGCACTTCTGGTGCACTTGC+TGG | 0.299865 | 8.4:+15789720 | MS.gene060561:CDS |
| GTGAGCTCTGAATGCGATTA+AGG | 0.301312 | 8.4:-15789682 | None:intergenic |
| CCCTCTATGTTGTAGGTTGT+TGG | 0.355656 | 8.4:+15792192 | MS.gene060561:intron |
| GACACTTGGTCTTCTGAGCT+TGG | 0.365229 | 8.4:+15790937 | MS.gene060561:CDS |
| CGGATCCACTGAGAAATAGA+TGG | 0.376312 | 8.4:-15789633 | None:intergenic |
| CTCCATTGCAGCAGCAATAA+TGG | 0.378209 | 8.4:-15790915 | None:intergenic |
| GGCGCAACATTGCAATTTAG+TGG | 0.386948 | 8.4:+15792057 | MS.gene060561:CDS |
| AACAGAGGCAATGCCACTAT+TGG | 0.410928 | 8.4:-15790794 | None:intergenic |
| AAGTATCATTGACTCTCTAT+TGG | 0.411402 | 8.4:+15792035 | MS.gene060561:CDS |
| AACAAGGTGGACAACGAAAC+TGG | 0.413804 | 8.4:+15789979 | MS.gene060561:CDS |
| TAGAATTCTCAAGCAACTAT+TGG | 0.422184 | 8.4:+15791978 | MS.gene060561:CDS |
| AAAGAGGTTATTCACCTTGA+AGG | 0.422918 | 8.4:-15790995 | None:intergenic |
| TTGTAGGTTGTTGGAAATCC+AGG | 0.453453 | 8.4:+15792201 | MS.gene060561:intron |
| AGTATCATTGACTCTCTATT+GGG | 0.459444 | 8.4:+15792036 | MS.gene060561:CDS |
| TTCTCAGTGGATCCGACCAT+TGG | 0.469540 | 8.4:+15789641 | MS.gene060561:CDS |
| GCAGCTGGTGGAAGTGTCAT+TGG | 0.473800 | 8.4:+15791907 | MS.gene060561:CDS |
| TCGTCTAATCACAACCTTCA+AGG | 0.476556 | 8.4:+15790981 | MS.gene060561:CDS |
| GCTCTAATTACCGCTCTCAT+TGG | 0.488116 | 8.4:+15790880 | MS.gene060561:CDS |
| GGACTTCTAGCAGCTGCAGC+TGG | 0.498554 | 8.4:+15791892 | MS.gene060561:CDS |
| CCATTGGTTGCTGTCACTGT+TGG | 0.504140 | 8.4:+15789657 | MS.gene060561:CDS |
| ATACCCCTCACTACCGTGGC+AGG | 0.517394 | 8.4:+15792003 | MS.gene060561:CDS |
| ATACAAGTTCTGGCCAATAG+TGG | 0.522110 | 8.4:+15790781 | MS.gene060561:CDS |
| CCTGTGAGGAAGGGTACAAA+TGG | 0.528132 | 8.4:+15791853 | MS.gene060561:CDS |
| CTAATTACCGCTCTCATTGG+TGG | 0.531975 | 8.4:+15790883 | MS.gene060561:CDS |
| GGCCATTATTGCTGCTGCAA+TGG | 0.538240 | 8.4:+15790913 | MS.gene060561:CDS |
| CCATTTGTACCCTTCCTCAC+AGG | 0.544901 | 8.4:-15791853 | None:intergenic |
| CTTCTAGCAGCTGCAGCTGG+TGG | 0.554176 | 8.4:+15791895 | MS.gene060561:CDS |
| GCTTTATGGGTACTAACAGA+AGG | 0.570914 | 8.4:+15790826 | MS.gene060561:CDS |
| ATAGTCCTGCCACGGTAGTG+AGG | 0.574585 | 8.4:-15792008 | None:intergenic |
| ACTACCGTGGCAGGACTATG+TGG | 0.586247 | 8.4:+15792012 | MS.gene060561:CDS |
| TTGGAGTTCTCAGTAATGAT+CGG | 0.586787 | 8.4:+15790956 | MS.gene060561:CDS |
| ATGGGTACTAACAGAAGGGA+AGG | 0.594387 | 8.4:+15790831 | MS.gene060561:CDS |
| TAGTCCTGCCACGGTAGTGA+GGG | 0.595711 | 8.4:-15792007 | None:intergenic |
| TAATCGCATTCAGAGCTCAC+AGG | 0.596274 | 8.4:+15789685 | MS.gene060561:CDS |
| ATTCTGCTCTATTCGCCAGA+AGG | 0.615062 | 8.4:+15792080 | MS.gene060561:CDS |
| GTGCATGAACTCTAAAGACT+CGG | 0.615281 | 8.4:+15790858 | MS.gene060561:CDS |
| CAAGTGCACCAGAAGTGCTG+AGG | 0.620284 | 8.4:-15789716 | None:intergenic |
| GGATCCACTGAGAAATAGAT+GGG | 0.623325 | 8.4:-15789632 | None:intergenic |
| AAGTGCACCAGAAGTGCTGA+GGG | 0.630378 | 8.4:-15789715 | None:intergenic |
| CTTTATGGGTACTAACAGAA+GGG | 0.631113 | 8.4:+15790827 | MS.gene060561:CDS |
| AGCGACTGAAGTTAAAATTG+TGG | 0.631604 | 8.4:-15792298 | None:intergenic |
| TTGAAGGTTGTGATTAGACG+AGG | 0.644573 | 8.4:-15790979 | None:intergenic |
| ATTGATCCTGAATTCAAACA+AGG | 0.648969 | 8.4:+15789963 | MS.gene060561:CDS |
| GCTGCTGCAATGGAGACACT+TGG | 0.651438 | 8.4:+15790923 | MS.gene060561:CDS |
| CAGTGACAGCAACCAATGGT+CGG | 0.652095 | 8.4:-15789653 | None:intergenic |
| CCAACAGTGACAGCAACCAA+TGG | 0.662526 | 8.4:-15789657 | None:intergenic |
| AGTCCTGCCACGGTAGTGAG+GGG | 0.669040 | 8.4:-15792006 | None:intergenic |
| ACTTCCACATAGTCCTGCCA+CGG | 0.681568 | 8.4:-15792016 | None:intergenic |
| GATCCTGAATTCAAACAAGG+TGG | 0.686429 | 8.4:+15789966 | MS.gene060561:CDS |
| AATAACACCACCAATGAGAG+CGG | 0.688307 | 8.4:-15790890 | None:intergenic |
| TAAAGCTACAATCAGAACAG+AGG | 0.688389 | 8.4:-15790809 | None:intergenic |
| AAAAGGGACAAGATACGAAG+CGG | 0.694625 | 8.4:+15789937 | MS.gene060561:CDS |
| GGTCATACCCCTCACTACCG+TGG | 0.698974 | 8.4:+15791999 | MS.gene060561:CDS |
| GTGAGGAAGGGTACAAATGG+TGG | 0.703389 | 8.4:+15791856 | MS.gene060561:CDS |
| TGGACCCATCTATTTCTCAG+TGG | 0.712343 | 8.4:+15789628 | MS.gene060561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTATAATCAATATTAC+AGG | + | chr8.4:15790413-15790432 | MS.gene060561:intron | 10.0% |
| !!! | AAATCTTTTTTGTTGTTTAA+TGG | + | chr8.4:15789830-15789849 | MS.gene060561:intron | 15.0% |
| !!! | TTCGAAATATAATTCTTTTT+TGG | + | chr8.4:15791301-15791320 | MS.gene060561:intron | 15.0% |
| !! | AAAACAAAATTGAGAATTTG+TGG | - | chr8.4:15791481-15791500 | None:intergenic | 20.0% |
| !! | AAAAGAAAAAGAGCAAAAAA+GGG | - | chr8.4:15790032-15790051 | None:intergenic | 20.0% |
| !! | AACGCTAAAAATTCTAATTA+GGG | + | chr8.4:15790515-15790534 | MS.gene060561:intron | 20.0% |
| !! | CTAATTAGTAAATGCAAATT+AGG | - | chr8.4:15791060-15791079 | None:intergenic | 20.0% |
| !! | TAAAAGAAAAAGAGCAAAAA+AGG | - | chr8.4:15790033-15790052 | None:intergenic | 20.0% |
| !! | TACATAAAAAAGCTAAAACT+TGG | + | chr8.4:15790592-15790611 | MS.gene060561:intron | 20.0% |
| !! | TACATTTGAACAAAATTCAA+TGG | + | chr8.4:15792142-15792161 | MS.gene060561:intron | 20.0% |
| !!! | CTAATTTGCATTTACTAATT+AGG | + | chr8.4:15791058-15791077 | MS.gene060561:intron | 20.0% |
| !!! | GAGTTTTTTTTACTATAAGA+TGG | + | chr8.4:15790222-15790241 | MS.gene060561:intron | 20.0% |
| !!! | TAATTGCAACAATTTTCTTT+TGG | + | chr8.4:15790645-15790664 | MS.gene060561:intron | 20.0% |
| !!! | TATTAGTTTTTCACATAAAG+TGG | + | chr8.4:15791605-15791624 | MS.gene060561:intron | 20.0% |
| !!! | TTTTTTGAAAATTCAGTATC+CGG | - | chr8.4:15790342-15790361 | None:intergenic | 20.0% |
| ! | AAAAAAGGGAACATAGAAAA+GGG | - | chr8.4:15790018-15790037 | None:intergenic | 25.0% |
| ! | AAATGCAAATTAGGAATAGA+AGG | - | chr8.4:15791051-15791070 | None:intergenic | 25.0% |
| ! | AATATTAATCAAAACATCCC+TGG | + | chr8.4:15791161-15791180 | MS.gene060561:intron | 25.0% |
| ! | AATTAAAAGAACAGAATGTG+AGG | - | chr8.4:15791558-15791577 | None:intergenic | 25.0% |
| ! | AATTTGTGGATCCTTTATTA+AGG | - | chr8.4:15791467-15791486 | None:intergenic | 25.0% |
| ! | ACATAAATGTATCCAACAAT+TGG | + | chr8.4:15790263-15790282 | MS.gene060561:intron | 25.0% |
| ! | ATTTGTGGATCCTTTATTAA+GGG | - | chr8.4:15791466-15791485 | None:intergenic | 25.0% |
| ! | CTTATAAGTTATAACATCTG+TGG | + | chr8.4:15791723-15791742 | MS.gene060561:intron | 25.0% |
| ! | GAACGCTAAAAATTCTAATT+AGG | + | chr8.4:15790514-15790533 | MS.gene060561:intron | 25.0% |
| ! | TAGAATTGATTAAACTTGTG+CGG | + | chr8.4:15790144-15790163 | MS.gene060561:intron | 25.0% |
| ! | TTGGATACATTTATGTAAGT+GGG | - | chr8.4:15790259-15790278 | None:intergenic | 25.0% |
| !! | ATAAAACTAAGTTGAACGAA+TGG | - | chr8.4:15790398-15790417 | None:intergenic | 25.0% |
| !! | TATAACTTGAGGTTAGATTT+TGG | + | chr8.4:15790200-15790219 | MS.gene060561:intron | 25.0% |
| !! | TCACAGCTTAAATATGTTTT+TGG | + | chr8.4:15791276-15791295 | MS.gene060561:intron | 25.0% |
| !! | TCATTCATTCATTTTCAACA+AGG | + | chr8.4:15789865-15789884 | MS.gene060561:intron | 25.0% |
| !!! | ATGGTTTTTTTGTCACATTA+TGG | + | chr8.4:15790707-15790726 | MS.gene060561:intron | 25.0% |
| !!! | TTGATGTTCATTAATTTGCT+AGG | + | chr8.4:15791126-15791145 | MS.gene060561:intron | 25.0% |
| ATTGATCCTGAATTCAAACA+AGG | + | chr8.4:15789963-15789982 | MS.gene060561:CDS | 30.0% | |
| CAAAAAAGGGAACATAGAAA+AGG | - | chr8.4:15790019-15790038 | None:intergenic | 30.0% | |
| CTACAATGGAATATAACTTG+AGG | + | chr8.4:15790189-15790208 | MS.gene060561:intron | 30.0% | |
| GGGAAATTTATACCAAATTC+AGG | - | chr8.4:15790745-15790764 | None:intergenic | 30.0% | |
| GTAATGCCAATATGAGAAAA+AGG | - | chr8.4:15792120-15792139 | None:intergenic | 30.0% | |
| GTATCCTGAAAAAAACAGTA+GGG | - | chr8.4:15790765-15790784 | None:intergenic | 30.0% | |
| GTGTATCAAAATTTACCTTC+TGG | - | chr8.4:15792098-15792117 | None:intergenic | 30.0% | |
| GTTGGATACATTTATGTAAG+TGG | - | chr8.4:15790260-15790279 | None:intergenic | 30.0% | |
| TAGAATTCTCAAGCAACTAT+TGG | + | chr8.4:15791978-15791997 | MS.gene060561:CDS | 30.0% | |
| TAGTAGTATAACTCAAGACA+AGG | - | chr8.4:15790061-15790080 | None:intergenic | 30.0% | |
| TATAACTTATAAGCCACTTG+TGG | - | chr8.4:15791716-15791735 | None:intergenic | 30.0% | |
| TGTATCCTGAAAAAAACAGT+AGG | - | chr8.4:15790766-15790785 | None:intergenic | 30.0% | |
| ! | ATGTTGTTGCTTAAACAAAG+AGG | - | chr8.4:15791014-15791033 | None:intergenic | 30.0% |
| ! | GAGACCTGAAATCTTTTTAA+CGG | - | chr8.4:15792232-15792251 | None:intergenic | 30.0% |
| ! | GATACACCTTTTTCTCATAT+TGG | + | chr8.4:15792111-15792130 | MS.gene060561:intron | 30.0% |
| ! | TTCACGTTTTTGTTGGATTT+AGG | + | chr8.4:15789760-15789779 | MS.gene060561:CDS | 30.0% |
| ! | TTCATTTTCAACAAGGTTTG+CGG | + | chr8.4:15789872-15789891 | MS.gene060561:intron | 30.0% |
| ! | TTCGTAATTTGTGATTGTGT+GGG | + | chr8.4:15791331-15791350 | MS.gene060561:intron | 30.0% |
| ! | TTTCGTAATTTGTGATTGTG+TGG | + | chr8.4:15791330-15791349 | MS.gene060561:intron | 30.0% |
| !! | AAGTATCATTGACTCTCTAT+TGG | + | chr8.4:15792035-15792054 | MS.gene060561:CDS | 30.0% |
| !! | AGTATCATTGACTCTCTATT+GGG | + | chr8.4:15792036-15792055 | MS.gene060561:CDS | 30.0% |
| !! | GTTTTTAAGCTTAAACTGCT+CGG | + | chr8.4:15791496-15791515 | MS.gene060561:intron | 30.0% |
| !! | TGTTCTGATTGTAGCTTTAT+GGG | + | chr8.4:15790813-15790832 | MS.gene060561:CDS | 30.0% |
| !! | TTTTTAAGCTTAAACTGCTC+GGG | + | chr8.4:15791497-15791516 | MS.gene060561:intron | 30.0% |
| !!! | ATTTCCCTACTGTTTTTTTC+AGG | + | chr8.4:15790758-15790777 | MS.gene060561:intron | 30.0% |
| !!! | TTCTAGAACTTTTGACAATC+AGG | + | chr8.4:15791944-15791963 | MS.gene060561:CDS | 30.0% |
| !!! | TTTTTTCAGGATACAAGTTC+TGG | + | chr8.4:15790771-15790790 | MS.gene060561:intron | 30.0% |
| !!! | TTTTTTGTCACATTATGGTG+AGG | + | chr8.4:15790712-15790731 | MS.gene060561:intron | 30.0% |
| AAAGAGGTTATTCACCTTGA+AGG | - | chr8.4:15790998-15791017 | None:intergenic | 35.0% | |
| AATTCATCCCTCTATGTTGT+AGG | + | chr8.4:15792185-15792204 | MS.gene060561:intron | 35.0% | |
| ACACATTAGTTGAATGTTCC+AGG | - | chr8.4:15791182-15791201 | None:intergenic | 35.0% | |
| AGAATGTGAGGAATCATTTG+AGG | - | chr8.4:15791546-15791565 | None:intergenic | 35.0% | |
| AGCGACTGAAGTTAAAATTG+TGG | - | chr8.4:15792301-15792320 | None:intergenic | 35.0% | |
| ATCCCACAAGTACTAAAATG+TGG | - | chr8.4:15790569-15790588 | None:intergenic | 35.0% | |
| ATTGATTAAACTTGTGCGGA+TGG | + | chr8.4:15790148-15790167 | MS.gene060561:intron | 35.0% | |
| CACATTAGTTGAATGTTCCA+GGG | - | chr8.4:15791181-15791200 | None:intergenic | 35.0% | |
| CCAACCGTTAAAAAGATTTC+AGG | + | chr8.4:15792225-15792244 | MS.gene060561:CDS | 35.0% | |
| CTTTATGGGTACTAACAGAA+GGG | + | chr8.4:15790827-15790846 | MS.gene060561:CDS | 35.0% | |
| GAATGTGAGGAATCATTTGA+GGG | - | chr8.4:15791545-15791564 | None:intergenic | 35.0% | |
| GTTGTTACATTGTCATGGAA+TGG | - | chr8.4:15791432-15791451 | None:intergenic | 35.0% | |
| TAAAGCTACAATCAGAACAG+AGG | - | chr8.4:15790812-15790831 | None:intergenic | 35.0% | |
| TACATTGTCATGGAATGGAA+GGG | - | chr8.4:15791427-15791446 | None:intergenic | 35.0% | |
| TGGATCCTTTATTAAGGGTT+CGG | - | chr8.4:15791461-15791480 | None:intergenic | 35.0% | |
| TTACATTGTCATGGAATGGA+AGG | - | chr8.4:15791428-15791447 | None:intergenic | 35.0% | |
| TTCTAAACTGCGAGTAATCT+TGG | + | chr8.4:15791212-15791231 | MS.gene060561:intron | 35.0% | |
| TTGGAGTTCTCAGTAATGAT+CGG | + | chr8.4:15790956-15790975 | MS.gene060561:CDS | 35.0% | |
| TTTATTAAGGGTTCGGATCA+GGG | - | chr8.4:15791454-15791473 | None:intergenic | 35.0% | |
| ! | AACTTTTGACAATCAGGTGT+GGG | + | chr8.4:15791950-15791969 | MS.gene060561:CDS | 35.0% |
| ! | ATGTCTCTTCACGTTTTTGT+TGG | + | chr8.4:15789753-15789772 | MS.gene060561:CDS | 35.0% |
| ! | CCTGAAATCTTTTTAACGGT+TGG | - | chr8.4:15792228-15792247 | None:intergenic | 35.0% |
| ! | CTGTTCTGATTGTAGCTTTA+TGG | + | chr8.4:15790812-15790831 | MS.gene060561:CDS | 35.0% |
| ! | TAATTAGGGTACTCTCTACA+GGG | + | chr8.4:15790529-15790548 | MS.gene060561:intron | 35.0% |
| ! | TGATATTTTATCAGCCTGTG+AGG | + | chr8.4:15791839-15791858 | MS.gene060561:intron | 35.0% |
| ! | TTTTAAGCTTAAACTGCTCG+GGG | + | chr8.4:15791498-15791517 | MS.gene060561:intron | 35.0% |
| !! | AAGCCACATTTTAGTACTTG+TGG | + | chr8.4:15790563-15790582 | MS.gene060561:intron | 35.0% |
| !! | AGCCACATTTTAGTACTTGT+GGG | + | chr8.4:15790564-15790583 | MS.gene060561:intron | 35.0% |
| !! | ATACATCTCCACTTTTGCAT+AGG | + | chr8.4:15790492-15790511 | MS.gene060561:intron | 35.0% |
| !! | TTTGGTGTTCAGTTTGAGTT+TGG | + | chr8.4:15790663-15790682 | MS.gene060561:intron | 35.0% |
| AAAAATTCCCTCAGCACTTC+TGG | + | chr8.4:15789708-15789727 | MS.gene060561:CDS | 40.0% | |
| AAAAGGGACAAGATACGAAG+CGG | + | chr8.4:15789937-15789956 | MS.gene060561:CDS | 40.0% | |
| AACTCTAGTCTCTAGCCAAT+AGG | - | chr8.4:15791663-15791682 | None:intergenic | 40.0% | |
| AATAACACCACCAATGAGAG+CGG | - | chr8.4:15790893-15790912 | None:intergenic | 40.0% | |
| AATTTGTGATTGTGTGGGTG+TGG | + | chr8.4:15791336-15791355 | MS.gene060561:intron | 40.0% | |
| ACATTGTCATGGAATGGAAG+GGG | - | chr8.4:15791426-15791445 | None:intergenic | 40.0% | |
| ACGAATGGTGATCTTAGACT+TGG | - | chr8.4:15790383-15790402 | None:intergenic | 40.0% | |
| ATCCTGAATTAGTCCGTTTG+TGG | + | chr8.4:15790315-15790334 | MS.gene060561:intron | 40.0% | |
| ATTTGTGATTGTGTGGGTGT+GGG | + | chr8.4:15791337-15791356 | MS.gene060561:intron | 40.0% | |
| CCAACAACCTACAACATAGA+GGG | - | chr8.4:15792195-15792214 | None:intergenic | 40.0% | |
| CTGATCCGAACCCTTAATAA+AGG | + | chr8.4:15791453-15791472 | MS.gene060561:intron | 40.0% | |
| CTTGGATGCATTCTTTGACT+TGG | + | chr8.4:15790610-15790629 | MS.gene060561:intron | 40.0% | |
| CTTTATTAAGGGTTCGGATC+AGG | - | chr8.4:15791455-15791474 | None:intergenic | 40.0% | |
| GATCCTGAATTCAAACAAGG+TGG | + | chr8.4:15789966-15789985 | MS.gene060561:CDS | 40.0% | |
| GCTTTATGGGTACTAACAGA+AGG | + | chr8.4:15790826-15790845 | MS.gene060561:CDS | 40.0% | |
| GGATCCACTGAGAAATAGAT+GGG | - | chr8.4:15789635-15789654 | None:intergenic | 40.0% | |
| GGCATCGCTAAATTGATTGA+GGG | + | chr8.4:15790684-15790703 | MS.gene060561:intron | 40.0% | |
| TAAACTTGTGCGGATGGATA+GGG | + | chr8.4:15790154-15790173 | MS.gene060561:intron | 40.0% | |
| TCAGGGTTGTTACATTGTCA+TGG | - | chr8.4:15791437-15791456 | None:intergenic | 40.0% | |
| TCCAACAACCTACAACATAG+AGG | - | chr8.4:15792196-15792215 | None:intergenic | 40.0% | |
| TCCTGAATTAGTCCGTTTGT+GGG | + | chr8.4:15790316-15790335 | MS.gene060561:intron | 40.0% | |
| TCGCTAAATTGATTGAGGGA+TGG | + | chr8.4:15790688-15790707 | MS.gene060561:intron | 40.0% | |
| TCGTCTAATCACAACCTTCA+AGG | + | chr8.4:15790981-15791000 | MS.gene060561:CDS | 40.0% | |
| TCGTCTGCACTCACAAAAAA+GGG | + | chr8.4:15789921-15789940 | MS.gene060561:CDS | 40.0% | |
| TGGCATCGCTAAATTGATTG+AGG | + | chr8.4:15790683-15790702 | MS.gene060561:intron | 40.0% | |
| TTAAACTTGTGCGGATGGAT+AGG | + | chr8.4:15790153-15790172 | MS.gene060561:intron | 40.0% | |
| TTAGCGTTCCTATGCAAAAG+TGG | - | chr8.4:15790503-15790522 | None:intergenic | 40.0% | |
| TTCAGTTGTAGCAGATAGAG+TGG | + | chr8.4:15791103-15791122 | MS.gene060561:intron | 40.0% | |
| TTCGTCTGCACTCACAAAAA+AGG | + | chr8.4:15789920-15789939 | MS.gene060561:CDS | 40.0% | |
| TTGAAGGTTGTGATTAGACG+AGG | - | chr8.4:15790982-15791001 | None:intergenic | 40.0% | |
| TTGTAGGTTGTTGGAAATCC+AGG | + | chr8.4:15792201-15792220 | MS.gene060561:intron | 40.0% | |
| TTTAAGCTTAAACTGCTCGG+GGG | + | chr8.4:15791499-15791518 | MS.gene060561:intron | 40.0% | |
| TTTGTCACATTATGGTGAGG+CGG | + | chr8.4:15790715-15790734 | MS.gene060561:intron | 40.0% | |
| ! | AATGGTGGTGTGACAAAAAC+AGG | + | chr8.4:15791871-15791890 | MS.gene060561:CDS | 40.0% |
| ! | ATACAAGTTCTGGCCAATAG+TGG | + | chr8.4:15790781-15790800 | MS.gene060561:CDS | 40.0% |
| ! | ATTTTATCAGCCTGTGAGGA+AGG | + | chr8.4:15791843-15791862 | MS.gene060561:intron | 40.0% |
| ! | CTAATTAGGGTACTCTCTAC+AGG | + | chr8.4:15790528-15790547 | MS.gene060561:intron | 40.0% |
| ! | GAACTTTTGACAATCAGGTG+TGG | + | chr8.4:15791949-15791968 | MS.gene060561:CDS | 40.0% |
| ! | GGTTGACTTTGTCTCTACAA+TGG | + | chr8.4:15790175-15790194 | MS.gene060561:intron | 40.0% |
| ! | GTGCATGAACTCTAAAGACT+CGG | + | chr8.4:15790858-15790877 | MS.gene060561:CDS | 40.0% |
| ! | TGTCCACCTTGTTTGAATTC+AGG | - | chr8.4:15789972-15789991 | None:intergenic | 40.0% |
| ! | TTTTATCAGCCTGTGAGGAA+GGG | + | chr8.4:15791844-15791863 | MS.gene060561:intron | 40.0% |
| !! | ATCTTTTTAACGGTTGGTCC+TGG | - | chr8.4:15792222-15792241 | None:intergenic | 40.0% |
| AACAAGGTGGACAACGAAAC+TGG | + | chr8.4:15789979-15789998 | MS.gene060561:CDS | 45.0% | |
| AACAGAGGCAATGCCACTAT+TGG | - | chr8.4:15790797-15790816 | None:intergenic | 45.0% | |
| ATGGGTACTAACAGAAGGGA+AGG | + | chr8.4:15790831-15790850 | MS.gene060561:CDS | 45.0% | |
| ATTCTGCTCTATTCGCCAGA+AGG | + | chr8.4:15792080-15792099 | MS.gene060561:CDS | 45.0% | |
| ATTGAAAGGGCTGGGTCATT+AGG | + | chr8.4:15791362-15791381 | MS.gene060561:intron | 45.0% | |
| CCCTCTATGTTGTAGGTTGT+TGG | + | chr8.4:15792192-15792211 | MS.gene060561:intron | 45.0% | |
| CGCGTAAGTCACATTCCTAT+TGG | + | chr8.4:15791645-15791664 | MS.gene060561:intron | 45.0% | |
| CGGATCCACTGAGAAATAGA+TGG | - | chr8.4:15789636-15789655 | None:intergenic | 45.0% | |
| CTAATTACCGCTCTCATTGG+TGG | + | chr8.4:15790883-15790902 | MS.gene060561:CDS | 45.0% | |
| CTCCATTGCAGCAGCAATAA+TGG | - | chr8.4:15790918-15790937 | None:intergenic | 45.0% | |
| GCTCTAATTACCGCTCTCAT+TGG | + | chr8.4:15790880-15790899 | MS.gene060561:CDS | 45.0% | |
| GGAATCATTTGAGGGAGGTT+AGG | - | chr8.4:15791537-15791556 | None:intergenic | 45.0% | |
| GGCGCAACATTGCAATTTAG+TGG | + | chr8.4:15792057-15792076 | MS.gene060561:CDS | 45.0% | |
| TAATCGCATTCAGAGCTCAC+AGG | + | chr8.4:15789685-15789704 | MS.gene060561:CDS | 45.0% | |
| TCAATACAATCGTCCACCAG+CGG | - | chr8.4:15790296-15790315 | None:intergenic | 45.0% | |
| TGTGAGGAATCATTTGAGGG+AGG | - | chr8.4:15791542-15791561 | None:intergenic | 45.0% | |
| TTAAGCTTAAACTGCTCGGG+GGG | + | chr8.4:15791500-15791519 | MS.gene060561:intron | 45.0% | |
| ! | TGGACCCATCTATTTCTCAG+TGG | + | chr8.4:15789628-15789647 | MS.gene060561:CDS | 45.0% |
| ! | TGTGGCAGCATGGCATTTTA+AGG | - | chr8.4:15791698-15791717 | None:intergenic | 45.0% |
| !! | GCTCTCATTGGTGGTGTTAT+TGG | + | chr8.4:15790892-15790911 | MS.gene060561:CDS | 45.0% |
| !! | GTGAGCTCTGAATGCGATTA+AGG | - | chr8.4:15789685-15789704 | None:intergenic | 45.0% |
| AAATGCCATGCTGCCACAAG+TGG | + | chr8.4:15791700-15791719 | MS.gene060561:intron | 50.0% | |
| AATACAATCGTCCACCAGCG+GGG | - | chr8.4:15790294-15790313 | None:intergenic | 50.0% | |
| ACTTCCACATAGTCCTGCCA+CGG | - | chr8.4:15792019-15792038 | None:intergenic | 50.0% | |
| ATAAGCCACTTGTGGCAGCA+TGG | - | chr8.4:15791708-15791727 | None:intergenic | 50.0% | |
| CAATACAATCGTCCACCAGC+GGG | - | chr8.4:15790295-15790314 | None:intergenic | 50.0% | |
| CAGTGACAGCAACCAATGGT+CGG | - | chr8.4:15789656-15789675 | None:intergenic | 50.0% | |
| CCAACAGTGACAGCAACCAA+TGG | - | chr8.4:15789660-15789679 | None:intergenic | 50.0% | |
| CCATTTGTACCCTTCCTCAC+AGG | - | chr8.4:15791856-15791875 | None:intergenic | 50.0% | |
| GAATTAGTCCGTTTGTGGGC+CGG | + | chr8.4:15790320-15790339 | MS.gene060561:intron | 50.0% | |
| GGCCATTATTGCTGCTGCAA+TGG | + | chr8.4:15790913-15790932 | MS.gene060561:CDS | 50.0% | |
| GTGGGTGTGGGACATTGAAA+GGG | + | chr8.4:15791349-15791368 | MS.gene060561:intron | 50.0% | |
| TGAGGCGGTTGACCTGAATT+TGG | + | chr8.4:15790730-15790749 | MS.gene060561:intron | 50.0% | |
| TGTGGGACATTGAAAGGGCT+GGG | + | chr8.4:15791354-15791373 | MS.gene060561:intron | 50.0% | |
| TGTGGGTGTGGGACATTGAA+AGG | + | chr8.4:15791348-15791367 | MS.gene060561:intron | 50.0% | |
| TTCAGTATCCGGCCCACAAA+CGG | - | chr8.4:15790331-15790350 | None:intergenic | 50.0% | |
| TTCTCAGTGGATCCGACCAT+TGG | + | chr8.4:15789641-15789660 | MS.gene060561:CDS | 50.0% | |
| ! | CCATTGGTTGCTGTCACTGT+TGG | + | chr8.4:15789657-15789676 | MS.gene060561:CDS | 50.0% |
| ! | CCTGTGAGGAAGGGTACAAA+TGG | + | chr8.4:15791853-15791872 | MS.gene060561:CDS | 50.0% |
| ! | GACACTTGGTCTTCTGAGCT+TGG | + | chr8.4:15790937-15790956 | MS.gene060561:CDS | 50.0% |
| ! | GTGAGGAAGGGTACAAATGG+TGG | + | chr8.4:15791856-15791875 | MS.gene060561:CDS | 50.0% |
| !! | AAGTGCACCAGAAGTGCTGA+GGG | - | chr8.4:15789718-15789737 | None:intergenic | 50.0% |
| !! | GCCCACAAACGGACTAATTC+AGG | - | chr8.4:15790320-15790339 | None:intergenic | 50.0% |
| ACTACCGTGGCAGGACTATG+TGG | + | chr8.4:15792012-15792031 | MS.gene060561:CDS | 55.0% | |
| AGCACTTCTGGTGCACTTGC+TGG | + | chr8.4:15789720-15789739 | MS.gene060561:CDS | 55.0% | |
| ATACAATCGTCCACCAGCGG+GGG | - | chr8.4:15790293-15790312 | None:intergenic | 55.0% | |
| ATAGTCCTGCCACGGTAGTG+AGG | - | chr8.4:15792011-15792030 | None:intergenic | 55.0% | |
| GCTGCTGCAATGGAGACACT+TGG | + | chr8.4:15790923-15790942 | MS.gene060561:CDS | 55.0% | |
| GTGTGGGACATTGAAAGGGC+TGG | + | chr8.4:15791353-15791372 | MS.gene060561:intron | 55.0% | |
| TAGTCCTGCCACGGTAGTGA+GGG | - | chr8.4:15792010-15792029 | None:intergenic | 55.0% | |
| !! | CAAGTGCACCAGAAGTGCTG+AGG | - | chr8.4:15789719-15789738 | None:intergenic | 55.0% |
| !! | GCAGCTGGTGGAAGTGTCAT+TGG | + | chr8.4:15791907-15791926 | MS.gene060561:CDS | 55.0% |
| AGTCCTGCCACGGTAGTGAG+GGG | - | chr8.4:15792009-15792028 | None:intergenic | 60.0% | |
| ATACCCCTCACTACCGTGGC+AGG | + | chr8.4:15792003-15792022 | MS.gene060561:CDS | 60.0% | |
| CTTCTAGCAGCTGCAGCTGG+TGG | + | chr8.4:15791895-15791914 | MS.gene060561:CDS | 60.0% | |
| GGACTTCTAGCAGCTGCAGC+TGG | + | chr8.4:15791892-15791911 | MS.gene060561:CDS | 60.0% | |
| GGTCATACCCCTCACTACCG+TGG | + | chr8.4:15791999-15792018 | MS.gene060561:CDS | 60.0% | |
| TACAATCGTCCACCAGCGGG+GGG | - | chr8.4:15790292-15790311 | None:intergenic | 60.0% | |
| AACAATTGGACCCCCCCCGC+TGG | + | chr8.4:15790277-15790296 | MS.gene060561:intron | 65.0% | |
| ACAATCGTCCACCAGCGGGG+GGG | - | chr8.4:15790291-15790310 | None:intergenic | 65.0% | |
| AGCGGGGGGGGTCCAATTGT+TGG | - | chr8.4:15790278-15790297 | None:intergenic | 65.0% | |
| AATTGGACCCCCCCCGCTGG+TGG | + | chr8.4:15790280-15790299 | MS.gene060561:intron | 70.0% | |
| CAATCGTCCACCAGCGGGGG+GGG | - | chr8.4:15790290-15790309 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 15789627 | 15792338 | 15789627 | ID=MS.gene060561 |
| chr8.4 | mRNA | 15789627 | 15792338 | 15789627 | ID=MS.gene060561.t1;Parent=MS.gene060561 |
| chr8.4 | exon | 15789627 | 15789781 | 15789627 | ID=MS.gene060561.t1.exon1;Parent=MS.gene060561.t1 |
| chr8.4 | CDS | 15789627 | 15789781 | 15789627 | ID=cds.MS.gene060561.t1;Parent=MS.gene060561.t1 |
| chr8.4 | exon | 15789887 | 15790000 | 15789887 | ID=MS.gene060561.t1.exon2;Parent=MS.gene060561.t1 |
| chr8.4 | CDS | 15789887 | 15790000 | 15789887 | ID=cds.MS.gene060561.t1;Parent=MS.gene060561.t1 |
| chr8.4 | exon | 15790780 | 15791002 | 15790780 | ID=MS.gene060561.t1.exon3;Parent=MS.gene060561.t1 |
| chr8.4 | CDS | 15790780 | 15791002 | 15790780 | ID=cds.MS.gene060561.t1;Parent=MS.gene060561.t1 |
| chr8.4 | exon | 15791853 | 15792101 | 15791853 | ID=MS.gene060561.t1.exon4;Parent=MS.gene060561.t1 |
| chr8.4 | CDS | 15791853 | 15792101 | 15791853 | ID=cds.MS.gene060561.t1;Parent=MS.gene060561.t1 |
| chr8.4 | exon | 15792207 | 15792338 | 15792207 | ID=MS.gene060561.t1.exon5;Parent=MS.gene060561.t1 |
| chr8.4 | CDS | 15792207 | 15792338 | 15792207 | ID=cds.MS.gene060561.t1;Parent=MS.gene060561.t1 |
| Gene Sequence |
| Protein sequence |
